Multiple sequence alignment - TraesCS4B01G309400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G309400 chr4B 100.000 2726 0 0 1 2726 599958692 599955967 0.000000e+00 5035.0
1 TraesCS4B01G309400 chr4B 83.117 154 20 4 2078 2225 575605389 575605542 4.730000e-28 135.0
2 TraesCS4B01G309400 chr4B 100.000 30 0 0 605 634 3287396 3287425 3.790000e-04 56.5
3 TraesCS4B01G309400 chr4D 94.314 2251 75 20 1 2228 475203001 475200781 0.000000e+00 3398.0
4 TraesCS4B01G309400 chr4D 96.875 32 1 0 687 718 507756155 507756186 1.000000e-03 54.7
5 TraesCS4B01G309400 chr4A 93.438 1463 54 23 778 2235 681934962 681933537 0.000000e+00 2132.0
6 TraesCS4B01G309400 chr4A 84.158 707 72 18 1 702 681935871 681935200 0.000000e+00 649.0
7 TraesCS4B01G309400 chr4A 83.117 154 20 4 2078 2225 713870885 713871038 4.730000e-28 135.0
8 TraesCS4B01G309400 chr7A 84.632 924 61 37 1016 1880 496085939 496085038 0.000000e+00 845.0
9 TraesCS4B01G309400 chr7A 83.660 153 20 3 2078 2225 435936473 435936321 3.660000e-29 139.0
10 TraesCS4B01G309400 chr7A 94.444 54 3 0 1878 1931 496084886 496084833 1.740000e-12 84.2
11 TraesCS4B01G309400 chr7D 84.481 915 67 34 1016 1877 445459926 445460818 0.000000e+00 833.0
12 TraesCS4B01G309400 chr7D 91.228 57 5 0 1875 1931 445460963 445461019 8.090000e-11 78.7
13 TraesCS4B01G309400 chr7D 94.118 34 2 0 691 724 109301550 109301517 5.000000e-03 52.8
14 TraesCS4B01G309400 chr7B 83.388 921 75 36 1016 1877 462060805 462061706 0.000000e+00 782.0
15 TraesCS4B01G309400 chr7B 84.000 150 22 2 2078 2225 431383924 431384073 2.830000e-30 143.0
16 TraesCS4B01G309400 chr7B 92.982 57 4 0 1875 1931 462061841 462061897 1.740000e-12 84.2
17 TraesCS4B01G309400 chr1B 84.314 153 18 6 2078 2225 625991682 625991531 7.870000e-31 145.0
18 TraesCS4B01G309400 chr3B 83.766 154 19 4 2078 2225 617959862 617959709 1.020000e-29 141.0
19 TraesCS4B01G309400 chr2A 84.828 145 16 4 2087 2225 593313637 593313781 1.020000e-29 141.0
20 TraesCS4B01G309400 chr2A 100.000 33 0 0 691 723 587277829 587277861 8.150000e-06 62.1
21 TraesCS4B01G309400 chr3D 83.226 155 18 6 2078 2225 2630398 2630551 4.730000e-28 135.0
22 TraesCS4B01G309400 chr3D 100.000 28 0 0 2314 2341 591010040 591010013 5.000000e-03 52.8
23 TraesCS4B01G309400 chr1D 94.737 38 2 0 597 634 191494981 191494944 2.930000e-05 60.2
24 TraesCS4B01G309400 chr1D 100.000 28 0 0 691 718 490577945 490577972 5.000000e-03 52.8
25 TraesCS4B01G309400 chr6D 89.130 46 4 1 599 643 54497142 54497187 3.790000e-04 56.5
26 TraesCS4B01G309400 chr6D 100.000 28 0 0 602 629 276875700 276875673 5.000000e-03 52.8
27 TraesCS4B01G309400 chr6D 100.000 28 0 0 691 718 386179358 386179385 5.000000e-03 52.8
28 TraesCS4B01G309400 chr6B 100.000 30 0 0 605 634 652889184 652889155 3.790000e-04 56.5
29 TraesCS4B01G309400 chr6B 100.000 29 0 0 601 629 90944978 90945006 1.000000e-03 54.7
30 TraesCS4B01G309400 chr3A 100.000 30 0 0 691 720 158356838 158356867 3.790000e-04 56.5
31 TraesCS4B01G309400 chr1A 100.000 29 0 0 602 630 564126620 564126592 1.000000e-03 54.7
32 TraesCS4B01G309400 chr5D 100.000 28 0 0 2314 2341 28158307 28158280 5.000000e-03 52.8
33 TraesCS4B01G309400 chr2B 100.000 28 0 0 691 718 152501305 152501332 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G309400 chr4B 599955967 599958692 2725 True 5035.00 5035 100.0000 1 2726 1 chr4B.!!$R1 2725
1 TraesCS4B01G309400 chr4D 475200781 475203001 2220 True 3398.00 3398 94.3140 1 2228 1 chr4D.!!$R1 2227
2 TraesCS4B01G309400 chr4A 681933537 681935871 2334 True 1390.50 2132 88.7980 1 2235 2 chr4A.!!$R1 2234
3 TraesCS4B01G309400 chr7A 496084833 496085939 1106 True 464.60 845 89.5380 1016 1931 2 chr7A.!!$R2 915
4 TraesCS4B01G309400 chr7D 445459926 445461019 1093 False 455.85 833 87.8545 1016 1931 2 chr7D.!!$F1 915
5 TraesCS4B01G309400 chr7B 462060805 462061897 1092 False 433.10 782 88.1850 1016 1931 2 chr7B.!!$F2 915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 290 0.392706 AGACGTGCCAGACATTGTCA 59.607 50.0 18.57 0.0 38.37 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2269 2691 0.179001 GTAGGCGGCCCACCAATATT 60.179 55.0 17.02 0.0 34.57 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 71 5.454062 CCACCAATTAACCTGGGATTATGA 58.546 41.667 9.64 0.00 38.36 2.15
72 75 8.576442 CACCAATTAACCTGGGATTATGATTAC 58.424 37.037 9.64 0.00 38.36 1.89
85 88 9.661563 GGGATTATGATTACCACGACAAATATA 57.338 33.333 0.00 0.00 0.00 0.86
92 95 4.402056 ACCACGACAAATATAGACCAGG 57.598 45.455 0.00 0.00 0.00 4.45
98 101 5.050490 CGACAAATATAGACCAGGTCCTTG 58.950 45.833 16.72 13.52 32.18 3.61
185 188 6.624352 CAAAGGTGGAATTCGATGTGATAT 57.376 37.500 0.00 0.00 0.00 1.63
252 256 2.124277 AGTAAAATTCCACTCGGCCC 57.876 50.000 0.00 0.00 0.00 5.80
286 290 0.392706 AGACGTGCCAGACATTGTCA 59.607 50.000 18.57 0.00 38.37 3.58
303 307 9.583756 GACATTGTCAAGACCACATGAAAGGTC 62.584 44.444 21.15 21.15 42.12 3.85
360 364 4.082463 GGATTTCGAAATGGCCACAAAGTA 60.082 41.667 27.27 0.00 0.00 2.24
442 446 3.689161 TCCGCTATTCCAAAACATGTCTG 59.311 43.478 0.00 0.00 0.00 3.51
621 626 0.896226 GCTACTCCCTCCGTTCACTT 59.104 55.000 0.00 0.00 0.00 3.16
687 692 6.872670 TCCGTTTTTAATGTGTTTGTTCAC 57.127 33.333 0.00 0.00 38.63 3.18
688 693 6.622549 TCCGTTTTTAATGTGTTTGTTCACT 58.377 32.000 0.00 0.00 38.90 3.41
689 694 7.091443 TCCGTTTTTAATGTGTTTGTTCACTT 58.909 30.769 0.00 0.00 38.90 3.16
690 695 8.242053 TCCGTTTTTAATGTGTTTGTTCACTTA 58.758 29.630 0.00 0.00 38.90 2.24
721 726 8.816640 ATGTGTTTGTTCACTTATTTCAATCC 57.183 30.769 0.00 0.00 38.90 3.01
728 733 4.496360 TCACTTATTTCAATCCGCGTGTA 58.504 39.130 4.92 0.00 0.00 2.90
748 753 9.911980 GCGTGTATAGTATTAAAAGAAAAGTCC 57.088 33.333 0.00 0.00 0.00 3.85
757 762 4.632538 AAAAGAAAAGTCCACGTTCTGG 57.367 40.909 0.00 0.00 42.29 3.86
759 764 1.134220 AGAAAAGTCCACGTTCTGGCA 60.134 47.619 0.00 0.00 40.39 4.92
767 947 2.083774 CCACGTTCTGGCAATGTATGT 58.916 47.619 0.00 0.00 31.36 2.29
815 1009 7.660030 TCACACTTGAGAATGTATCATAGGA 57.340 36.000 0.00 0.00 0.00 2.94
816 1010 7.720442 TCACACTTGAGAATGTATCATAGGAG 58.280 38.462 0.00 0.00 0.00 3.69
833 1027 3.296854 AGGAGTACATCGCAGTTCCATA 58.703 45.455 0.00 0.00 0.00 2.74
849 1043 5.530171 AGTTCCATAATACTGATGCTTGCAG 59.470 40.000 0.87 0.00 39.26 4.41
905 1099 3.127533 GCCTACCACTTGCAGGCG 61.128 66.667 0.00 0.00 44.99 5.52
957 1151 2.158593 TCTCGAATTCCCCACAAAACCA 60.159 45.455 0.00 0.00 0.00 3.67
1429 1656 3.423162 GACGCGCTGATGAGCTCCT 62.423 63.158 12.15 0.00 43.77 3.69
1446 1673 4.689549 TGGGACGGCGAGGAGGAA 62.690 66.667 16.62 0.00 0.00 3.36
1638 1880 3.771160 GGCGACCGGATGGACACT 61.771 66.667 9.46 0.00 39.21 3.55
2024 2443 6.948589 TGTGTTTACCTAGGCACATATTACA 58.051 36.000 9.30 1.77 37.00 2.41
2046 2465 7.682787 ACAAGATCACTAATCAAGGGTATCT 57.317 36.000 0.00 0.00 36.79 1.98
2071 2490 4.608269 TGCAATGATTATTCCCACCTTGA 58.392 39.130 0.00 0.00 0.00 3.02
2075 2494 6.321181 GCAATGATTATTCCCACCTTGAGTTA 59.679 38.462 0.00 0.00 0.00 2.24
2100 2519 3.156334 GCGTCATTTGTCGCGACT 58.844 55.556 36.27 17.05 41.85 4.18
2195 2617 5.699458 ACCGTTTCACTATTGAATTTCTCGT 59.301 36.000 0.00 0.00 41.50 4.18
2196 2618 6.015504 CCGTTTCACTATTGAATTTCTCGTG 58.984 40.000 0.00 0.97 41.50 4.35
2228 2650 9.730705 ATCTTTCAAAGTAGATCTCATGTCAAA 57.269 29.630 0.00 0.00 0.00 2.69
2229 2651 9.212641 TCTTTCAAAGTAGATCTCATGTCAAAG 57.787 33.333 0.00 3.36 0.00 2.77
2230 2652 8.908786 TTTCAAAGTAGATCTCATGTCAAAGT 57.091 30.769 0.00 0.00 0.00 2.66
2232 2654 9.645059 TTCAAAGTAGATCTCATGTCAAAGTAG 57.355 33.333 0.00 0.00 0.00 2.57
2233 2655 9.025041 TCAAAGTAGATCTCATGTCAAAGTAGA 57.975 33.333 0.00 0.00 0.00 2.59
2234 2656 9.814899 CAAAGTAGATCTCATGTCAAAGTAGAT 57.185 33.333 0.00 0.00 0.00 1.98
2236 2658 8.177119 AGTAGATCTCATGTCAAAGTAGATCC 57.823 38.462 0.00 2.37 42.22 3.36
2237 2659 6.418057 AGATCTCATGTCAAAGTAGATCCC 57.582 41.667 12.34 0.00 42.22 3.85
2238 2660 6.142498 AGATCTCATGTCAAAGTAGATCCCT 58.858 40.000 12.34 0.00 42.22 4.20
2239 2661 6.614906 AGATCTCATGTCAAAGTAGATCCCTT 59.385 38.462 12.34 0.00 42.22 3.95
2240 2662 5.982356 TCTCATGTCAAAGTAGATCCCTTG 58.018 41.667 0.00 0.00 0.00 3.61
2241 2663 5.721480 TCTCATGTCAAAGTAGATCCCTTGA 59.279 40.000 0.00 0.00 0.00 3.02
2242 2664 6.385176 TCTCATGTCAAAGTAGATCCCTTGAT 59.615 38.462 0.00 0.00 0.00 2.57
2243 2665 6.962182 TCATGTCAAAGTAGATCCCTTGATT 58.038 36.000 0.00 0.00 0.00 2.57
2244 2666 8.089625 TCATGTCAAAGTAGATCCCTTGATTA 57.910 34.615 0.00 0.00 0.00 1.75
2245 2667 7.987458 TCATGTCAAAGTAGATCCCTTGATTAC 59.013 37.037 0.00 0.00 0.00 1.89
2246 2668 7.496346 TGTCAAAGTAGATCCCTTGATTACT 57.504 36.000 0.00 0.00 31.73 2.24
2247 2669 7.918076 TGTCAAAGTAGATCCCTTGATTACTT 58.082 34.615 0.00 0.00 36.93 2.24
2248 2670 8.041323 TGTCAAAGTAGATCCCTTGATTACTTC 58.959 37.037 2.78 0.00 35.78 3.01
2249 2671 8.261522 GTCAAAGTAGATCCCTTGATTACTTCT 58.738 37.037 2.78 0.00 35.78 2.85
2250 2672 8.478877 TCAAAGTAGATCCCTTGATTACTTCTC 58.521 37.037 2.78 0.00 35.78 2.87
2251 2673 6.987403 AGTAGATCCCTTGATTACTTCTCC 57.013 41.667 0.00 0.00 28.81 3.71
2252 2674 5.841783 AGTAGATCCCTTGATTACTTCTCCC 59.158 44.000 0.00 0.00 28.81 4.30
2253 2675 3.977326 AGATCCCTTGATTACTTCTCCCC 59.023 47.826 0.00 0.00 0.00 4.81
2254 2676 3.214694 TCCCTTGATTACTTCTCCCCA 57.785 47.619 0.00 0.00 0.00 4.96
2255 2677 3.747852 TCCCTTGATTACTTCTCCCCAT 58.252 45.455 0.00 0.00 0.00 4.00
2256 2678 4.903149 TCCCTTGATTACTTCTCCCCATA 58.097 43.478 0.00 0.00 0.00 2.74
2257 2679 5.486332 TCCCTTGATTACTTCTCCCCATAT 58.514 41.667 0.00 0.00 0.00 1.78
2258 2680 6.639938 TCCCTTGATTACTTCTCCCCATATA 58.360 40.000 0.00 0.00 0.00 0.86
2259 2681 7.263901 TCCCTTGATTACTTCTCCCCATATAT 58.736 38.462 0.00 0.00 0.00 0.86
2260 2682 8.414623 TCCCTTGATTACTTCTCCCCATATATA 58.585 37.037 0.00 0.00 0.00 0.86
2261 2683 9.230477 CCCTTGATTACTTCTCCCCATATATAT 57.770 37.037 0.00 0.00 0.00 0.86
2268 2690 9.869667 TTACTTCTCCCCATATATATAGAGCTC 57.130 37.037 5.27 5.27 0.00 4.09
2269 2691 7.888105 ACTTCTCCCCATATATATAGAGCTCA 58.112 38.462 17.77 2.09 0.00 4.26
2270 2692 8.347591 ACTTCTCCCCATATATATAGAGCTCAA 58.652 37.037 17.77 0.65 0.00 3.02
2271 2693 9.378504 CTTCTCCCCATATATATAGAGCTCAAT 57.621 37.037 17.77 8.87 0.00 2.57
2281 2703 2.355010 AGAGCTCAATATTGGTGGGC 57.645 50.000 17.77 13.50 0.00 5.36
2282 2704 1.133668 AGAGCTCAATATTGGTGGGCC 60.134 52.381 17.77 0.00 0.00 5.80
2283 2705 0.466189 AGCTCAATATTGGTGGGCCG 60.466 55.000 15.36 0.00 37.67 6.13
2284 2706 2.032981 CTCAATATTGGTGGGCCGC 58.967 57.895 15.36 9.05 37.67 6.53
2285 2707 1.454847 TCAATATTGGTGGGCCGCC 60.455 57.895 29.44 29.44 37.67 6.13
2286 2708 1.455587 CAATATTGGTGGGCCGCCT 60.456 57.895 34.46 19.59 37.67 5.52
2287 2709 0.179004 CAATATTGGTGGGCCGCCTA 60.179 55.000 34.46 28.60 37.67 3.93
2288 2710 0.179001 AATATTGGTGGGCCGCCTAC 60.179 55.000 34.46 17.33 37.67 3.18
2289 2711 1.060163 ATATTGGTGGGCCGCCTACT 61.060 55.000 34.46 21.23 35.27 2.57
2290 2712 1.978455 TATTGGTGGGCCGCCTACTG 61.978 60.000 34.46 0.00 35.27 2.74
2292 2714 3.712907 GGTGGGCCGCCTACTGAA 61.713 66.667 28.90 0.00 35.27 3.02
2293 2715 2.590092 GTGGGCCGCCTACTGAAT 59.410 61.111 18.22 0.00 32.04 2.57
2294 2716 1.077716 GTGGGCCGCCTACTGAATT 60.078 57.895 18.22 0.00 32.04 2.17
2295 2717 0.179468 GTGGGCCGCCTACTGAATTA 59.821 55.000 18.22 0.00 32.04 1.40
2296 2718 0.913205 TGGGCCGCCTACTGAATTAA 59.087 50.000 9.86 0.00 0.00 1.40
2297 2719 1.134220 TGGGCCGCCTACTGAATTAAG 60.134 52.381 9.86 0.00 0.00 1.85
2298 2720 1.134189 GGGCCGCCTACTGAATTAAGT 60.134 52.381 9.86 0.00 0.00 2.24
2299 2721 1.940613 GGCCGCCTACTGAATTAAGTG 59.059 52.381 5.64 0.00 0.00 3.16
2300 2722 2.419574 GGCCGCCTACTGAATTAAGTGA 60.420 50.000 5.64 0.00 0.00 3.41
2301 2723 3.267483 GCCGCCTACTGAATTAAGTGAA 58.733 45.455 5.64 0.00 0.00 3.18
2302 2724 3.877508 GCCGCCTACTGAATTAAGTGAAT 59.122 43.478 5.64 0.00 0.00 2.57
2303 2725 4.024809 GCCGCCTACTGAATTAAGTGAATC 60.025 45.833 5.64 0.00 0.00 2.52
2304 2726 5.116180 CCGCCTACTGAATTAAGTGAATCA 58.884 41.667 5.64 0.00 0.00 2.57
2305 2727 5.006746 CCGCCTACTGAATTAAGTGAATCAC 59.993 44.000 5.02 5.02 34.10 3.06
2306 2728 5.276395 CGCCTACTGAATTAAGTGAATCACG 60.276 44.000 7.83 0.00 39.64 4.35
2307 2729 5.502544 GCCTACTGAATTAAGTGAATCACGC 60.503 44.000 7.83 0.00 39.64 5.34
2308 2730 4.584029 ACTGAATTAAGTGAATCACGCG 57.416 40.909 3.53 3.53 39.64 6.01
2309 2731 3.994392 ACTGAATTAAGTGAATCACGCGT 59.006 39.130 5.58 5.58 39.64 6.01
2310 2732 5.165676 ACTGAATTAAGTGAATCACGCGTA 58.834 37.500 13.44 0.28 39.64 4.42
2311 2733 5.288712 ACTGAATTAAGTGAATCACGCGTAG 59.711 40.000 13.44 6.92 39.64 3.51
2312 2734 5.165676 TGAATTAAGTGAATCACGCGTAGT 58.834 37.500 13.44 0.00 39.64 2.73
2313 2735 5.287752 TGAATTAAGTGAATCACGCGTAGTC 59.712 40.000 13.44 10.35 39.64 2.59
2314 2736 1.614385 AAGTGAATCACGCGTAGTCG 58.386 50.000 13.44 0.00 39.64 4.18
2328 2750 4.907188 CGTAGTCGCGAGAACTATATCT 57.093 45.455 10.24 1.53 45.01 1.98
2329 2751 4.873457 CGTAGTCGCGAGAACTATATCTC 58.127 47.826 10.24 0.00 45.01 2.75
2342 2764 9.627395 GAGAACTATATCTCGCTTATAGCAAAA 57.373 33.333 0.00 0.00 42.58 2.44
2351 2773 9.937175 ATCTCGCTTATAGCAAAATTAAAGAAC 57.063 29.630 0.00 0.00 42.58 3.01
2352 2774 8.395633 TCTCGCTTATAGCAAAATTAAAGAACC 58.604 33.333 0.00 0.00 42.58 3.62
2353 2775 8.276252 TCGCTTATAGCAAAATTAAAGAACCT 57.724 30.769 0.00 0.00 42.58 3.50
2354 2776 8.395633 TCGCTTATAGCAAAATTAAAGAACCTC 58.604 33.333 0.00 0.00 42.58 3.85
2355 2777 8.398665 CGCTTATAGCAAAATTAAAGAACCTCT 58.601 33.333 0.00 0.00 42.58 3.69
2356 2778 9.723447 GCTTATAGCAAAATTAAAGAACCTCTC 57.277 33.333 0.00 0.00 41.89 3.20
2357 2779 9.922305 CTTATAGCAAAATTAAAGAACCTCTCG 57.078 33.333 0.00 0.00 0.00 4.04
2358 2780 5.048153 AGCAAAATTAAAGAACCTCTCGC 57.952 39.130 0.00 0.00 0.00 5.03
2359 2781 4.082733 AGCAAAATTAAAGAACCTCTCGCC 60.083 41.667 0.00 0.00 0.00 5.54
2360 2782 4.082733 GCAAAATTAAAGAACCTCTCGCCT 60.083 41.667 0.00 0.00 0.00 5.52
2361 2783 5.393962 CAAAATTAAAGAACCTCTCGCCTG 58.606 41.667 0.00 0.00 0.00 4.85
2362 2784 4.553330 AATTAAAGAACCTCTCGCCTGA 57.447 40.909 0.00 0.00 0.00 3.86
2363 2785 4.553330 ATTAAAGAACCTCTCGCCTGAA 57.447 40.909 0.00 0.00 0.00 3.02
2364 2786 4.553330 TTAAAGAACCTCTCGCCTGAAT 57.447 40.909 0.00 0.00 0.00 2.57
2365 2787 2.393271 AAGAACCTCTCGCCTGAATG 57.607 50.000 0.00 0.00 0.00 2.67
2366 2788 1.561643 AGAACCTCTCGCCTGAATGA 58.438 50.000 0.00 0.00 0.00 2.57
2367 2789 2.114616 AGAACCTCTCGCCTGAATGAT 58.885 47.619 0.00 0.00 0.00 2.45
2368 2790 2.102252 AGAACCTCTCGCCTGAATGATC 59.898 50.000 0.00 0.00 0.00 2.92
2369 2791 0.755686 ACCTCTCGCCTGAATGATCC 59.244 55.000 0.00 0.00 0.00 3.36
2370 2792 0.319383 CCTCTCGCCTGAATGATCCG 60.319 60.000 0.00 0.00 0.00 4.18
2371 2793 0.943359 CTCTCGCCTGAATGATCCGC 60.943 60.000 0.00 0.00 0.00 5.54
2372 2794 1.227350 CTCGCCTGAATGATCCGCA 60.227 57.895 0.00 0.00 0.00 5.69
2373 2795 1.220169 CTCGCCTGAATGATCCGCAG 61.220 60.000 0.00 0.00 0.00 5.18
2374 2796 1.522355 CGCCTGAATGATCCGCAGT 60.522 57.895 0.00 0.00 0.00 4.40
2375 2797 0.249447 CGCCTGAATGATCCGCAGTA 60.249 55.000 0.00 0.00 0.00 2.74
2376 2798 1.806247 CGCCTGAATGATCCGCAGTAA 60.806 52.381 0.00 0.00 0.00 2.24
2377 2799 2.498167 GCCTGAATGATCCGCAGTAAT 58.502 47.619 0.00 0.00 0.00 1.89
2378 2800 2.225019 GCCTGAATGATCCGCAGTAATG 59.775 50.000 0.00 0.00 0.00 1.90
2379 2801 2.810274 CCTGAATGATCCGCAGTAATGG 59.190 50.000 0.00 0.00 0.00 3.16
2380 2802 2.810274 CTGAATGATCCGCAGTAATGGG 59.190 50.000 0.00 0.00 0.00 4.00
2381 2803 2.172505 TGAATGATCCGCAGTAATGGGT 59.827 45.455 6.49 0.00 0.00 4.51
2382 2804 2.550830 ATGATCCGCAGTAATGGGTC 57.449 50.000 6.49 0.00 0.00 4.46
2383 2805 0.104120 TGATCCGCAGTAATGGGTCG 59.896 55.000 6.49 0.00 0.00 4.79
2384 2806 0.600255 GATCCGCAGTAATGGGTCGG 60.600 60.000 6.49 4.07 41.30 4.79
2385 2807 2.660258 ATCCGCAGTAATGGGTCGGC 62.660 60.000 6.49 0.00 39.90 5.54
2386 2808 2.895372 CGCAGTAATGGGTCGGCC 60.895 66.667 0.00 0.00 0.00 6.13
2387 2809 2.270850 GCAGTAATGGGTCGGCCA 59.729 61.111 9.07 0.00 36.17 5.36
2388 2810 2.112815 GCAGTAATGGGTCGGCCAC 61.113 63.158 9.07 0.00 36.17 5.01
2389 2811 1.451387 CAGTAATGGGTCGGCCACC 60.451 63.158 9.07 14.11 45.97 4.61
2390 2812 1.615424 AGTAATGGGTCGGCCACCT 60.615 57.895 19.69 6.96 45.95 4.00
2391 2813 0.325860 AGTAATGGGTCGGCCACCTA 60.326 55.000 19.69 15.89 45.95 3.08
2392 2814 0.179065 GTAATGGGTCGGCCACCTAC 60.179 60.000 19.69 12.67 45.95 3.18
2393 2815 0.325860 TAATGGGTCGGCCACCTACT 60.326 55.000 19.69 9.78 45.95 2.57
2394 2816 0.325860 AATGGGTCGGCCACCTACTA 60.326 55.000 19.69 8.25 45.95 1.82
2395 2817 0.325860 ATGGGTCGGCCACCTACTAA 60.326 55.000 19.69 5.84 45.95 2.24
2396 2818 0.325860 TGGGTCGGCCACCTACTAAT 60.326 55.000 19.69 0.00 45.95 1.73
2397 2819 0.106149 GGGTCGGCCACCTACTAATG 59.894 60.000 19.69 0.00 45.95 1.90
2398 2820 0.532196 GGTCGGCCACCTACTAATGC 60.532 60.000 14.93 0.00 42.84 3.56
2399 2821 0.177141 GTCGGCCACCTACTAATGCA 59.823 55.000 2.24 0.00 0.00 3.96
2400 2822 0.177141 TCGGCCACCTACTAATGCAC 59.823 55.000 2.24 0.00 0.00 4.57
2401 2823 0.107897 CGGCCACCTACTAATGCACA 60.108 55.000 2.24 0.00 0.00 4.57
2402 2824 1.677518 CGGCCACCTACTAATGCACAA 60.678 52.381 2.24 0.00 0.00 3.33
2403 2825 2.654863 GGCCACCTACTAATGCACAAT 58.345 47.619 0.00 0.00 0.00 2.71
2404 2826 3.023832 GGCCACCTACTAATGCACAATT 58.976 45.455 0.00 0.00 0.00 2.32
2405 2827 4.204012 GGCCACCTACTAATGCACAATTA 58.796 43.478 0.00 0.00 0.00 1.40
2406 2828 4.642885 GGCCACCTACTAATGCACAATTAA 59.357 41.667 0.00 0.00 30.24 1.40
2407 2829 5.126384 GGCCACCTACTAATGCACAATTAAA 59.874 40.000 0.00 0.00 30.24 1.52
2408 2830 6.350612 GGCCACCTACTAATGCACAATTAAAA 60.351 38.462 0.00 0.00 30.24 1.52
2409 2831 6.530181 GCCACCTACTAATGCACAATTAAAAC 59.470 38.462 0.00 0.00 30.24 2.43
2410 2832 7.598278 CCACCTACTAATGCACAATTAAAACA 58.402 34.615 0.00 0.00 30.24 2.83
2411 2833 8.085296 CCACCTACTAATGCACAATTAAAACAA 58.915 33.333 0.00 0.00 30.24 2.83
2412 2834 9.128107 CACCTACTAATGCACAATTAAAACAAG 57.872 33.333 0.00 0.00 30.24 3.16
2413 2835 9.073475 ACCTACTAATGCACAATTAAAACAAGA 57.927 29.630 0.00 0.00 30.24 3.02
2414 2836 9.906660 CCTACTAATGCACAATTAAAACAAGAA 57.093 29.630 0.00 0.00 30.24 2.52
2433 2855 7.661968 ACAAGAAAAATAGAGAAAAAGGGAGC 58.338 34.615 0.00 0.00 0.00 4.70
2434 2856 7.287696 ACAAGAAAAATAGAGAAAAAGGGAGCA 59.712 33.333 0.00 0.00 0.00 4.26
2435 2857 7.220741 AGAAAAATAGAGAAAAAGGGAGCAC 57.779 36.000 0.00 0.00 0.00 4.40
2436 2858 5.984695 AAAATAGAGAAAAAGGGAGCACC 57.015 39.130 0.00 0.00 40.67 5.01
2446 2868 3.309582 GGAGCACCCAAGGATCGA 58.690 61.111 0.00 0.00 34.14 3.59
2447 2869 1.832912 GGAGCACCCAAGGATCGAT 59.167 57.895 0.00 0.00 34.14 3.59
2448 2870 0.250081 GGAGCACCCAAGGATCGATC 60.250 60.000 17.36 17.36 34.14 3.69
2449 2871 0.755686 GAGCACCCAAGGATCGATCT 59.244 55.000 23.96 8.31 0.00 2.75
2450 2872 0.755686 AGCACCCAAGGATCGATCTC 59.244 55.000 23.96 14.37 0.00 2.75
2451 2873 0.465705 GCACCCAAGGATCGATCTCA 59.534 55.000 23.96 0.00 0.00 3.27
2452 2874 1.134401 GCACCCAAGGATCGATCTCAA 60.134 52.381 23.96 0.00 0.00 3.02
2453 2875 2.831333 CACCCAAGGATCGATCTCAAG 58.169 52.381 23.96 12.17 0.00 3.02
2454 2876 2.169352 CACCCAAGGATCGATCTCAAGT 59.831 50.000 23.96 12.75 0.00 3.16
2455 2877 2.169352 ACCCAAGGATCGATCTCAAGTG 59.831 50.000 23.96 14.12 0.00 3.16
2456 2878 2.169352 CCCAAGGATCGATCTCAAGTGT 59.831 50.000 23.96 0.55 0.00 3.55
2457 2879 3.369892 CCCAAGGATCGATCTCAAGTGTT 60.370 47.826 23.96 5.05 0.00 3.32
2458 2880 3.868077 CCAAGGATCGATCTCAAGTGTTC 59.132 47.826 23.96 5.00 0.00 3.18
2459 2881 4.382470 CCAAGGATCGATCTCAAGTGTTCT 60.382 45.833 23.96 7.23 0.00 3.01
2460 2882 5.174395 CAAGGATCGATCTCAAGTGTTCTT 58.826 41.667 23.96 12.54 0.00 2.52
2470 2892 2.292267 CAAGTGTTCTTGGTGCTGAGT 58.708 47.619 0.64 0.00 45.02 3.41
2471 2893 3.466836 CAAGTGTTCTTGGTGCTGAGTA 58.533 45.455 0.64 0.00 45.02 2.59
2472 2894 3.393089 AGTGTTCTTGGTGCTGAGTAG 57.607 47.619 0.00 0.00 0.00 2.57
2473 2895 4.052285 AAGTGTTCTTGGTGCTGAGTAGC 61.052 47.826 0.00 0.00 40.27 3.58
2474 2896 6.495415 AAGTGTTCTTGGTGCTGAGTAGCA 62.495 45.833 0.00 0.00 43.82 3.49
2475 2897 7.886989 AAGTGTTCTTGGTGCTGAGTAGCAA 62.887 44.000 14.09 14.09 45.62 3.91
2484 2906 2.609427 CTGAGTAGCAATGCTAGCCA 57.391 50.000 16.10 14.44 42.11 4.75
2485 2907 3.123157 CTGAGTAGCAATGCTAGCCAT 57.877 47.619 16.10 2.09 42.11 4.40
2486 2908 4.263018 CTGAGTAGCAATGCTAGCCATA 57.737 45.455 16.10 0.00 42.11 2.74
2487 2909 4.244066 CTGAGTAGCAATGCTAGCCATAG 58.756 47.826 16.10 6.40 42.11 2.23
2488 2910 3.897505 TGAGTAGCAATGCTAGCCATAGA 59.102 43.478 16.10 0.00 42.11 1.98
2489 2911 4.021632 TGAGTAGCAATGCTAGCCATAGAG 60.022 45.833 16.10 0.00 42.11 2.43
2490 2912 2.855209 AGCAATGCTAGCCATAGAGG 57.145 50.000 13.29 0.00 36.99 3.69
2504 2926 5.192327 CCATAGAGGCATTTGTCCAATTC 57.808 43.478 0.00 0.00 0.00 2.17
2505 2927 4.646040 CCATAGAGGCATTTGTCCAATTCA 59.354 41.667 0.00 0.00 0.00 2.57
2506 2928 5.303589 CCATAGAGGCATTTGTCCAATTCAT 59.696 40.000 0.00 0.00 0.00 2.57
2507 2929 6.491062 CCATAGAGGCATTTGTCCAATTCATA 59.509 38.462 0.00 0.00 0.00 2.15
2508 2930 5.841957 AGAGGCATTTGTCCAATTCATAC 57.158 39.130 0.00 0.00 0.00 2.39
2509 2931 5.513233 AGAGGCATTTGTCCAATTCATACT 58.487 37.500 0.00 0.00 0.00 2.12
2510 2932 6.662755 AGAGGCATTTGTCCAATTCATACTA 58.337 36.000 0.00 0.00 0.00 1.82
2511 2933 7.118723 AGAGGCATTTGTCCAATTCATACTAA 58.881 34.615 0.00 0.00 0.00 2.24
2512 2934 7.615365 AGAGGCATTTGTCCAATTCATACTAAA 59.385 33.333 0.00 0.00 0.00 1.85
2513 2935 8.133024 AGGCATTTGTCCAATTCATACTAAAA 57.867 30.769 0.00 0.00 0.00 1.52
2514 2936 8.761689 AGGCATTTGTCCAATTCATACTAAAAT 58.238 29.630 0.00 0.00 0.00 1.82
2524 2946 9.817365 CCAATTCATACTAAAATAGAAGATGCG 57.183 33.333 0.00 0.00 0.00 4.73
2528 2950 9.981114 TTCATACTAAAATAGAAGATGCGATCA 57.019 29.630 0.00 0.00 0.00 2.92
2529 2951 9.981114 TCATACTAAAATAGAAGATGCGATCAA 57.019 29.630 0.00 0.00 0.00 2.57
2531 2953 9.988815 ATACTAAAATAGAAGATGCGATCAACT 57.011 29.630 0.00 0.00 0.00 3.16
2532 2954 8.723942 ACTAAAATAGAAGATGCGATCAACTT 57.276 30.769 0.00 0.00 37.92 2.66
2533 2955 8.607459 ACTAAAATAGAAGATGCGATCAACTTG 58.393 33.333 0.00 0.00 35.77 3.16
2534 2956 7.615582 AAAATAGAAGATGCGATCAACTTGA 57.384 32.000 0.00 0.00 35.77 3.02
2535 2957 6.841443 AATAGAAGATGCGATCAACTTGAG 57.159 37.500 0.00 0.00 35.77 3.02
2536 2958 3.529533 AGAAGATGCGATCAACTTGAGG 58.470 45.455 0.00 0.00 35.77 3.86
2537 2959 2.322355 AGATGCGATCAACTTGAGGG 57.678 50.000 0.00 0.00 0.00 4.30
2538 2960 1.833630 AGATGCGATCAACTTGAGGGA 59.166 47.619 0.00 0.00 0.00 4.20
2539 2961 2.237143 AGATGCGATCAACTTGAGGGAA 59.763 45.455 0.00 0.00 0.00 3.97
2540 2962 2.559698 TGCGATCAACTTGAGGGAAA 57.440 45.000 0.00 0.00 0.00 3.13
2541 2963 2.857483 TGCGATCAACTTGAGGGAAAA 58.143 42.857 0.00 0.00 0.00 2.29
2542 2964 2.813754 TGCGATCAACTTGAGGGAAAAG 59.186 45.455 0.00 0.00 0.00 2.27
2543 2965 3.074412 GCGATCAACTTGAGGGAAAAGA 58.926 45.455 0.00 0.00 0.00 2.52
2544 2966 3.126000 GCGATCAACTTGAGGGAAAAGAG 59.874 47.826 0.00 0.00 0.00 2.85
2545 2967 4.569943 CGATCAACTTGAGGGAAAAGAGA 58.430 43.478 0.00 0.00 0.00 3.10
2546 2968 4.997395 CGATCAACTTGAGGGAAAAGAGAA 59.003 41.667 0.00 0.00 0.00 2.87
2547 2969 5.121454 CGATCAACTTGAGGGAAAAGAGAAG 59.879 44.000 0.00 0.00 0.00 2.85
2548 2970 4.718961 TCAACTTGAGGGAAAAGAGAAGG 58.281 43.478 0.00 0.00 0.00 3.46
2549 2971 4.412199 TCAACTTGAGGGAAAAGAGAAGGA 59.588 41.667 0.00 0.00 0.00 3.36
2550 2972 5.073691 TCAACTTGAGGGAAAAGAGAAGGAT 59.926 40.000 0.00 0.00 0.00 3.24
2551 2973 5.590976 ACTTGAGGGAAAAGAGAAGGATT 57.409 39.130 0.00 0.00 0.00 3.01
2552 2974 5.958321 ACTTGAGGGAAAAGAGAAGGATTT 58.042 37.500 0.00 0.00 0.00 2.17
2553 2975 6.377080 ACTTGAGGGAAAAGAGAAGGATTTT 58.623 36.000 0.00 0.00 0.00 1.82
2554 2976 6.491745 ACTTGAGGGAAAAGAGAAGGATTTTC 59.508 38.462 2.56 2.56 42.19 2.29
2555 2977 5.952387 TGAGGGAAAAGAGAAGGATTTTCA 58.048 37.500 11.27 0.00 43.84 2.69
2556 2978 5.770162 TGAGGGAAAAGAGAAGGATTTTCAC 59.230 40.000 11.27 8.25 45.16 3.18
2558 2980 6.018589 GGGAAAAGAGAAGGATTTTCACTG 57.981 41.667 11.27 0.00 42.75 3.66
2559 2981 5.536538 GGGAAAAGAGAAGGATTTTCACTGT 59.463 40.000 11.27 0.00 42.75 3.55
2560 2982 6.040955 GGGAAAAGAGAAGGATTTTCACTGTT 59.959 38.462 11.27 0.00 42.75 3.16
2561 2983 7.417911 GGGAAAAGAGAAGGATTTTCACTGTTT 60.418 37.037 11.27 0.00 42.75 2.83
2562 2984 8.630037 GGAAAAGAGAAGGATTTTCACTGTTTA 58.370 33.333 11.27 0.00 43.84 2.01
2567 2989 9.579932 AGAGAAGGATTTTCACTGTTTATTTCT 57.420 29.630 0.00 0.00 0.00 2.52
2568 2990 9.833182 GAGAAGGATTTTCACTGTTTATTTCTC 57.167 33.333 0.00 0.00 32.01 2.87
2569 2991 8.797438 AGAAGGATTTTCACTGTTTATTTCTCC 58.203 33.333 0.00 0.00 0.00 3.71
2570 2992 7.145932 AGGATTTTCACTGTTTATTTCTCCG 57.854 36.000 0.00 0.00 0.00 4.63
2571 2993 6.715264 AGGATTTTCACTGTTTATTTCTCCGT 59.285 34.615 0.00 0.00 0.00 4.69
2572 2994 7.881232 AGGATTTTCACTGTTTATTTCTCCGTA 59.119 33.333 0.00 0.00 0.00 4.02
2573 2995 8.674607 GGATTTTCACTGTTTATTTCTCCGTAT 58.325 33.333 0.00 0.00 0.00 3.06
2576 2998 9.672086 TTTTCACTGTTTATTTCTCCGTATTTG 57.328 29.630 0.00 0.00 0.00 2.32
2577 2999 7.372451 TCACTGTTTATTTCTCCGTATTTGG 57.628 36.000 0.00 0.00 0.00 3.28
2578 3000 6.938030 TCACTGTTTATTTCTCCGTATTTGGT 59.062 34.615 0.00 0.00 0.00 3.67
2579 3001 7.446013 TCACTGTTTATTTCTCCGTATTTGGTT 59.554 33.333 0.00 0.00 0.00 3.67
2580 3002 8.079809 CACTGTTTATTTCTCCGTATTTGGTTT 58.920 33.333 0.00 0.00 0.00 3.27
2581 3003 8.635328 ACTGTTTATTTCTCCGTATTTGGTTTT 58.365 29.630 0.00 0.00 0.00 2.43
2582 3004 9.471084 CTGTTTATTTCTCCGTATTTGGTTTTT 57.529 29.630 0.00 0.00 0.00 1.94
2657 3079 8.541133 TTTTTCTCGGTTTTCACTGAATTTTT 57.459 26.923 0.00 0.00 37.88 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 41 5.084818 CCAGGTTAATTGGTGGGAATTTC 57.915 43.478 0.00 0.00 0.00 2.17
68 71 6.099269 ACCTGGTCTATATTTGTCGTGGTAAT 59.901 38.462 0.00 0.00 0.00 1.89
72 75 4.369182 GACCTGGTCTATATTTGTCGTGG 58.631 47.826 19.53 0.00 0.00 4.94
85 88 2.635427 GAGAAGTTCAAGGACCTGGTCT 59.365 50.000 25.01 9.57 32.47 3.85
92 95 2.037772 TGCTCAGGAGAAGTTCAAGGAC 59.962 50.000 5.50 0.00 0.00 3.85
98 101 1.437625 GTGCTGCTCAGGAGAAGTTC 58.562 55.000 0.00 0.00 36.43 3.01
252 256 1.088340 CGTCTTGCCTGCATCTGGAG 61.088 60.000 0.00 0.00 0.00 3.86
327 331 4.630069 CCATTTCGAAATCCACTAGACGTT 59.370 41.667 20.31 0.00 0.00 3.99
360 364 4.860802 TGTGTGAGGGGTCATGATTTAT 57.139 40.909 0.00 0.00 0.00 1.40
442 446 9.643693 ACAAATTTAAAGATGGTTCATCATGAC 57.356 29.630 0.00 0.00 42.72 3.06
664 669 6.622549 AGTGAACAAACACATTAAAAACGGA 58.377 32.000 0.00 0.00 42.45 4.69
675 680 9.862371 ACACATTAAAATAAGTGAACAAACACA 57.138 25.926 0.00 0.00 42.45 3.72
721 726 9.615779 GACTTTTCTTTTAATACTATACACGCG 57.384 33.333 3.53 3.53 0.00 6.01
748 753 3.932710 AGTACATACATTGCCAGAACGTG 59.067 43.478 0.00 0.00 0.00 4.49
749 754 4.202245 AGTACATACATTGCCAGAACGT 57.798 40.909 0.00 0.00 0.00 3.99
750 755 4.034048 GGAAGTACATACATTGCCAGAACG 59.966 45.833 0.00 0.00 0.00 3.95
752 757 5.435686 AGGAAGTACATACATTGCCAGAA 57.564 39.130 0.00 0.00 0.00 3.02
754 759 5.415701 ACAAAGGAAGTACATACATTGCCAG 59.584 40.000 0.00 0.00 0.00 4.85
757 762 6.523201 CGAAACAAAGGAAGTACATACATTGC 59.477 38.462 0.00 0.00 0.00 3.56
759 764 6.430000 AGCGAAACAAAGGAAGTACATACATT 59.570 34.615 0.00 0.00 0.00 2.71
767 947 2.806244 GCAGAGCGAAACAAAGGAAGTA 59.194 45.455 0.00 0.00 0.00 2.24
814 1008 6.363626 CAGTATTATGGAACTGCGATGTACTC 59.636 42.308 0.00 0.00 36.96 2.59
815 1009 6.040504 TCAGTATTATGGAACTGCGATGTACT 59.959 38.462 0.00 0.00 42.31 2.73
816 1010 6.213677 TCAGTATTATGGAACTGCGATGTAC 58.786 40.000 0.00 0.00 42.31 2.90
833 1027 3.960571 AGGAACTGCAAGCATCAGTATT 58.039 40.909 6.05 0.00 43.36 1.89
905 1099 6.402226 GGTGTTGATTTCGACTGAAGTATTCC 60.402 42.308 0.00 0.00 46.93 3.01
957 1151 7.187824 TGCTCAACTCCTAGAGATGTTTATT 57.812 36.000 0.00 0.00 34.70 1.40
1429 1656 4.689549 TTCCTCCTCGCCGTCCCA 62.690 66.667 0.00 0.00 0.00 4.37
2024 2443 9.401058 CAAAAGATACCCTTGATTAGTGATCTT 57.599 33.333 0.00 0.00 34.66 2.40
2044 2463 5.721000 AGGTGGGAATAATCATTGCAAAAGA 59.279 36.000 1.71 5.20 34.35 2.52
2046 2465 6.013898 TCAAGGTGGGAATAATCATTGCAAAA 60.014 34.615 1.71 0.00 34.35 2.44
2071 2490 3.253188 ACAAATGACGCACATGCTTAACT 59.747 39.130 1.82 0.00 39.39 2.24
2075 2494 1.400113 CGACAAATGACGCACATGCTT 60.400 47.619 1.82 0.00 39.39 3.91
2094 2513 2.468532 AAAGAAAACCACAAGTCGCG 57.531 45.000 0.00 0.00 0.00 5.87
2153 2574 2.228582 CGGTTCAGGATTTTGATGCACA 59.771 45.455 0.00 0.00 0.00 4.57
2154 2575 2.228822 ACGGTTCAGGATTTTGATGCAC 59.771 45.455 0.00 0.00 0.00 4.57
2228 2650 5.841783 GGGAGAAGTAATCAAGGGATCTACT 59.158 44.000 0.00 0.00 33.08 2.57
2229 2651 5.012251 GGGGAGAAGTAATCAAGGGATCTAC 59.988 48.000 0.00 0.00 31.88 2.59
2230 2652 5.155905 GGGGAGAAGTAATCAAGGGATCTA 58.844 45.833 0.00 0.00 31.88 1.98
2232 2654 3.716872 TGGGGAGAAGTAATCAAGGGATC 59.283 47.826 0.00 0.00 31.88 3.36
2233 2655 3.747852 TGGGGAGAAGTAATCAAGGGAT 58.252 45.455 0.00 0.00 34.43 3.85
2234 2656 3.214694 TGGGGAGAAGTAATCAAGGGA 57.785 47.619 0.00 0.00 0.00 4.20
2235 2657 5.850046 ATATGGGGAGAAGTAATCAAGGG 57.150 43.478 0.00 0.00 0.00 3.95
2242 2664 9.869667 GAGCTCTATATATATGGGGAGAAGTAA 57.130 37.037 10.02 0.00 0.00 2.24
2243 2665 9.015146 TGAGCTCTATATATATGGGGAGAAGTA 57.985 37.037 16.19 0.21 0.00 2.24
2244 2666 7.888105 TGAGCTCTATATATATGGGGAGAAGT 58.112 38.462 16.19 2.58 0.00 3.01
2245 2667 8.774546 TTGAGCTCTATATATATGGGGAGAAG 57.225 38.462 16.19 0.00 0.00 2.85
2255 2677 8.651389 GCCCACCAATATTGAGCTCTATATATA 58.349 37.037 24.73 11.47 0.00 0.86
2256 2678 7.420680 GGCCCACCAATATTGAGCTCTATATAT 60.421 40.741 24.73 16.70 35.26 0.86
2257 2679 6.126768 GGCCCACCAATATTGAGCTCTATATA 60.127 42.308 24.73 15.47 35.26 0.86
2258 2680 5.339530 GGCCCACCAATATTGAGCTCTATAT 60.340 44.000 20.66 20.66 35.26 0.86
2259 2681 4.019321 GGCCCACCAATATTGAGCTCTATA 60.019 45.833 18.20 18.20 35.26 1.31
2260 2682 3.245052 GGCCCACCAATATTGAGCTCTAT 60.245 47.826 17.23 15.55 35.26 1.98
2261 2683 2.106511 GGCCCACCAATATTGAGCTCTA 59.893 50.000 17.23 7.99 35.26 2.43
2262 2684 1.133668 GGCCCACCAATATTGAGCTCT 60.134 52.381 17.23 0.00 35.26 4.09
2263 2685 1.322442 GGCCCACCAATATTGAGCTC 58.678 55.000 17.23 6.82 35.26 4.09
2264 2686 0.466189 CGGCCCACCAATATTGAGCT 60.466 55.000 17.23 0.00 34.57 4.09
2265 2687 2.032981 CGGCCCACCAATATTGAGC 58.967 57.895 17.23 12.77 34.57 4.26
2266 2688 1.455383 GGCGGCCCACCAATATTGAG 61.455 60.000 17.23 9.36 34.57 3.02
2267 2689 1.454847 GGCGGCCCACCAATATTGA 60.455 57.895 17.23 0.00 34.57 2.57
2268 2690 0.179004 TAGGCGGCCCACCAATATTG 60.179 55.000 17.02 8.58 34.57 1.90
2269 2691 0.179001 GTAGGCGGCCCACCAATATT 60.179 55.000 17.02 0.00 34.57 1.28
2270 2692 1.060163 AGTAGGCGGCCCACCAATAT 61.060 55.000 17.02 0.00 34.57 1.28
2271 2693 1.691337 AGTAGGCGGCCCACCAATA 60.691 57.895 17.02 0.00 34.57 1.90
2272 2694 3.015145 AGTAGGCGGCCCACCAAT 61.015 61.111 17.02 0.00 34.57 3.16
2273 2695 4.028490 CAGTAGGCGGCCCACCAA 62.028 66.667 17.02 0.00 34.57 3.67
2275 2697 2.552231 AATTCAGTAGGCGGCCCACC 62.552 60.000 17.02 3.53 0.00 4.61
2276 2698 0.179468 TAATTCAGTAGGCGGCCCAC 59.821 55.000 17.02 13.22 0.00 4.61
2277 2699 0.913205 TTAATTCAGTAGGCGGCCCA 59.087 50.000 17.02 0.00 0.00 5.36
2278 2700 1.134189 ACTTAATTCAGTAGGCGGCCC 60.134 52.381 17.02 0.38 0.00 5.80
2279 2701 1.940613 CACTTAATTCAGTAGGCGGCC 59.059 52.381 12.11 12.11 0.00 6.13
2280 2702 2.901249 TCACTTAATTCAGTAGGCGGC 58.099 47.619 0.00 0.00 0.00 6.53
2281 2703 5.006746 GTGATTCACTTAATTCAGTAGGCGG 59.993 44.000 9.59 0.00 0.00 6.13
2282 2704 5.276395 CGTGATTCACTTAATTCAGTAGGCG 60.276 44.000 14.54 0.00 31.34 5.52
2283 2705 5.502544 GCGTGATTCACTTAATTCAGTAGGC 60.503 44.000 14.54 2.56 31.34 3.93
2284 2706 5.276395 CGCGTGATTCACTTAATTCAGTAGG 60.276 44.000 14.54 0.00 31.34 3.18
2285 2707 5.288712 ACGCGTGATTCACTTAATTCAGTAG 59.711 40.000 12.93 0.00 31.34 2.57
2286 2708 5.165676 ACGCGTGATTCACTTAATTCAGTA 58.834 37.500 12.93 0.00 31.34 2.74
2287 2709 3.994392 ACGCGTGATTCACTTAATTCAGT 59.006 39.130 12.93 0.00 31.34 3.41
2288 2710 4.584029 ACGCGTGATTCACTTAATTCAG 57.416 40.909 12.93 0.00 31.34 3.02
2289 2711 5.165676 ACTACGCGTGATTCACTTAATTCA 58.834 37.500 24.59 0.00 31.34 2.57
2290 2712 5.552104 CGACTACGCGTGATTCACTTAATTC 60.552 44.000 24.59 0.08 31.34 2.17
2291 2713 4.264614 CGACTACGCGTGATTCACTTAATT 59.735 41.667 24.59 0.00 31.34 1.40
2292 2714 3.789756 CGACTACGCGTGATTCACTTAAT 59.210 43.478 24.59 0.00 31.34 1.40
2293 2715 3.165890 CGACTACGCGTGATTCACTTAA 58.834 45.455 24.59 0.00 31.34 1.85
2294 2716 2.777494 CGACTACGCGTGATTCACTTA 58.223 47.619 24.59 0.00 31.34 2.24
2295 2717 1.614385 CGACTACGCGTGATTCACTT 58.386 50.000 24.59 0.00 31.34 3.16
2296 2718 3.307829 CGACTACGCGTGATTCACT 57.692 52.632 24.59 0.00 31.34 3.41
2307 2729 4.873457 GAGATATAGTTCTCGCGACTACG 58.127 47.826 3.71 0.00 36.52 3.51
2316 2738 9.627395 TTTTGCTATAAGCGAGATATAGTTCTC 57.373 33.333 9.74 0.00 46.26 2.87
2325 2747 9.937175 GTTCTTTAATTTTGCTATAAGCGAGAT 57.063 29.630 0.00 0.00 46.26 2.75
2326 2748 8.395633 GGTTCTTTAATTTTGCTATAAGCGAGA 58.604 33.333 0.00 0.00 46.26 4.04
2327 2749 8.398665 AGGTTCTTTAATTTTGCTATAAGCGAG 58.601 33.333 0.00 0.00 46.26 5.03
2328 2750 8.276252 AGGTTCTTTAATTTTGCTATAAGCGA 57.724 30.769 0.00 0.00 46.26 4.93
2329 2751 8.398665 AGAGGTTCTTTAATTTTGCTATAAGCG 58.601 33.333 0.00 0.00 46.26 4.68
2330 2752 9.723447 GAGAGGTTCTTTAATTTTGCTATAAGC 57.277 33.333 0.00 0.00 42.82 3.09
2331 2753 9.922305 CGAGAGGTTCTTTAATTTTGCTATAAG 57.078 33.333 0.00 0.00 0.00 1.73
2332 2754 8.395633 GCGAGAGGTTCTTTAATTTTGCTATAA 58.604 33.333 0.00 0.00 0.00 0.98
2333 2755 7.012044 GGCGAGAGGTTCTTTAATTTTGCTATA 59.988 37.037 0.00 0.00 0.00 1.31
2334 2756 6.183360 GGCGAGAGGTTCTTTAATTTTGCTAT 60.183 38.462 0.00 0.00 0.00 2.97
2335 2757 5.123344 GGCGAGAGGTTCTTTAATTTTGCTA 59.877 40.000 0.00 0.00 0.00 3.49
2336 2758 4.082733 GGCGAGAGGTTCTTTAATTTTGCT 60.083 41.667 0.00 0.00 0.00 3.91
2337 2759 4.082733 AGGCGAGAGGTTCTTTAATTTTGC 60.083 41.667 0.00 0.00 0.00 3.68
2338 2760 5.181245 TCAGGCGAGAGGTTCTTTAATTTTG 59.819 40.000 0.00 0.00 0.00 2.44
2339 2761 5.313712 TCAGGCGAGAGGTTCTTTAATTTT 58.686 37.500 0.00 0.00 0.00 1.82
2340 2762 4.906618 TCAGGCGAGAGGTTCTTTAATTT 58.093 39.130 0.00 0.00 0.00 1.82
2341 2763 4.553330 TCAGGCGAGAGGTTCTTTAATT 57.447 40.909 0.00 0.00 0.00 1.40
2342 2764 4.553330 TTCAGGCGAGAGGTTCTTTAAT 57.447 40.909 0.00 0.00 0.00 1.40
2343 2765 4.020573 TCATTCAGGCGAGAGGTTCTTTAA 60.021 41.667 0.00 0.00 0.00 1.52
2344 2766 3.513912 TCATTCAGGCGAGAGGTTCTTTA 59.486 43.478 0.00 0.00 0.00 1.85
2345 2767 2.303022 TCATTCAGGCGAGAGGTTCTTT 59.697 45.455 0.00 0.00 0.00 2.52
2346 2768 1.902508 TCATTCAGGCGAGAGGTTCTT 59.097 47.619 0.00 0.00 0.00 2.52
2347 2769 1.561643 TCATTCAGGCGAGAGGTTCT 58.438 50.000 0.00 0.00 0.00 3.01
2348 2770 2.478831 GATCATTCAGGCGAGAGGTTC 58.521 52.381 0.00 0.00 0.00 3.62
2349 2771 1.139853 GGATCATTCAGGCGAGAGGTT 59.860 52.381 0.00 0.00 0.00 3.50
2350 2772 0.755686 GGATCATTCAGGCGAGAGGT 59.244 55.000 0.00 0.00 0.00 3.85
2351 2773 0.319383 CGGATCATTCAGGCGAGAGG 60.319 60.000 0.00 0.00 0.00 3.69
2352 2774 0.943359 GCGGATCATTCAGGCGAGAG 60.943 60.000 0.00 0.00 0.00 3.20
2353 2775 1.068083 GCGGATCATTCAGGCGAGA 59.932 57.895 0.00 0.00 0.00 4.04
2354 2776 1.220169 CTGCGGATCATTCAGGCGAG 61.220 60.000 0.00 0.00 0.00 5.03
2355 2777 1.227350 CTGCGGATCATTCAGGCGA 60.227 57.895 0.00 0.00 0.00 5.54
2356 2778 0.249447 TACTGCGGATCATTCAGGCG 60.249 55.000 0.00 0.00 32.42 5.52
2357 2779 1.953559 TTACTGCGGATCATTCAGGC 58.046 50.000 0.00 0.00 32.42 4.85
2358 2780 2.810274 CCATTACTGCGGATCATTCAGG 59.190 50.000 0.00 0.00 32.42 3.86
2359 2781 2.810274 CCCATTACTGCGGATCATTCAG 59.190 50.000 0.00 0.80 0.00 3.02
2360 2782 2.172505 ACCCATTACTGCGGATCATTCA 59.827 45.455 0.00 0.00 0.00 2.57
2361 2783 2.808543 GACCCATTACTGCGGATCATTC 59.191 50.000 0.00 0.00 0.00 2.67
2362 2784 2.806745 CGACCCATTACTGCGGATCATT 60.807 50.000 0.00 0.00 0.00 2.57
2363 2785 1.270305 CGACCCATTACTGCGGATCAT 60.270 52.381 0.00 0.00 0.00 2.45
2364 2786 0.104120 CGACCCATTACTGCGGATCA 59.896 55.000 0.00 0.00 0.00 2.92
2365 2787 0.600255 CCGACCCATTACTGCGGATC 60.600 60.000 0.00 0.00 44.43 3.36
2366 2788 1.445942 CCGACCCATTACTGCGGAT 59.554 57.895 0.00 0.00 44.43 4.18
2367 2789 2.897207 CCGACCCATTACTGCGGA 59.103 61.111 0.00 0.00 44.43 5.54
2368 2790 2.895372 GCCGACCCATTACTGCGG 60.895 66.667 0.00 0.00 44.47 5.69
2369 2791 2.895372 GGCCGACCCATTACTGCG 60.895 66.667 0.00 0.00 0.00 5.18
2370 2792 2.270850 TGGCCGACCCATTACTGC 59.729 61.111 0.00 0.00 39.18 4.40
2379 2801 0.532196 GCATTAGTAGGTGGCCGACC 60.532 60.000 14.52 14.52 46.58 4.79
2380 2802 0.177141 TGCATTAGTAGGTGGCCGAC 59.823 55.000 0.00 0.00 0.00 4.79
2381 2803 0.177141 GTGCATTAGTAGGTGGCCGA 59.823 55.000 0.00 0.00 0.00 5.54
2382 2804 0.107897 TGTGCATTAGTAGGTGGCCG 60.108 55.000 0.00 0.00 0.00 6.13
2383 2805 2.122783 TTGTGCATTAGTAGGTGGCC 57.877 50.000 0.00 0.00 0.00 5.36
2384 2806 5.828299 TTAATTGTGCATTAGTAGGTGGC 57.172 39.130 0.00 0.00 0.00 5.01
2385 2807 7.598278 TGTTTTAATTGTGCATTAGTAGGTGG 58.402 34.615 0.00 0.00 0.00 4.61
2386 2808 9.128107 CTTGTTTTAATTGTGCATTAGTAGGTG 57.872 33.333 0.00 0.00 0.00 4.00
2387 2809 9.073475 TCTTGTTTTAATTGTGCATTAGTAGGT 57.927 29.630 0.00 0.00 0.00 3.08
2388 2810 9.906660 TTCTTGTTTTAATTGTGCATTAGTAGG 57.093 29.630 0.00 0.00 0.00 3.18
2407 2829 8.144478 GCTCCCTTTTTCTCTATTTTTCTTGTT 58.856 33.333 0.00 0.00 0.00 2.83
2408 2830 7.287696 TGCTCCCTTTTTCTCTATTTTTCTTGT 59.712 33.333 0.00 0.00 0.00 3.16
2409 2831 7.596621 GTGCTCCCTTTTTCTCTATTTTTCTTG 59.403 37.037 0.00 0.00 0.00 3.02
2410 2832 7.255977 GGTGCTCCCTTTTTCTCTATTTTTCTT 60.256 37.037 0.00 0.00 0.00 2.52
2411 2833 6.209589 GGTGCTCCCTTTTTCTCTATTTTTCT 59.790 38.462 0.00 0.00 0.00 2.52
2412 2834 6.390721 GGTGCTCCCTTTTTCTCTATTTTTC 58.609 40.000 0.00 0.00 0.00 2.29
2413 2835 6.346477 GGTGCTCCCTTTTTCTCTATTTTT 57.654 37.500 0.00 0.00 0.00 1.94
2414 2836 5.984695 GGTGCTCCCTTTTTCTCTATTTT 57.015 39.130 0.00 0.00 0.00 1.82
2429 2851 0.250081 GATCGATCCTTGGGTGCTCC 60.250 60.000 14.76 0.00 0.00 4.70
2430 2852 0.755686 AGATCGATCCTTGGGTGCTC 59.244 55.000 21.66 0.00 0.00 4.26
2431 2853 0.755686 GAGATCGATCCTTGGGTGCT 59.244 55.000 21.66 0.00 0.00 4.40
2432 2854 0.465705 TGAGATCGATCCTTGGGTGC 59.534 55.000 21.66 2.64 0.00 5.01
2433 2855 2.169352 ACTTGAGATCGATCCTTGGGTG 59.831 50.000 21.66 8.44 0.00 4.61
2434 2856 2.169352 CACTTGAGATCGATCCTTGGGT 59.831 50.000 21.66 11.43 0.00 4.51
2435 2857 2.169352 ACACTTGAGATCGATCCTTGGG 59.831 50.000 21.66 12.82 0.00 4.12
2436 2858 3.533606 ACACTTGAGATCGATCCTTGG 57.466 47.619 21.66 12.15 0.00 3.61
2437 2859 4.753233 AGAACACTTGAGATCGATCCTTG 58.247 43.478 21.66 13.33 0.00 3.61
2438 2860 5.174395 CAAGAACACTTGAGATCGATCCTT 58.826 41.667 21.66 11.17 42.26 3.36
2439 2861 4.382470 CCAAGAACACTTGAGATCGATCCT 60.382 45.833 21.66 9.28 42.26 3.24
2440 2862 3.868077 CCAAGAACACTTGAGATCGATCC 59.132 47.826 21.66 13.44 42.26 3.36
2441 2863 4.328440 CACCAAGAACACTTGAGATCGATC 59.672 45.833 17.91 17.91 42.26 3.69
2442 2864 4.248859 CACCAAGAACACTTGAGATCGAT 58.751 43.478 0.00 0.00 42.26 3.59
2443 2865 3.653344 CACCAAGAACACTTGAGATCGA 58.347 45.455 10.89 0.00 42.26 3.59
2444 2866 2.158449 GCACCAAGAACACTTGAGATCG 59.842 50.000 10.89 0.00 42.26 3.69
2445 2867 3.188048 CAGCACCAAGAACACTTGAGATC 59.812 47.826 10.89 0.00 42.26 2.75
2446 2868 3.144506 CAGCACCAAGAACACTTGAGAT 58.855 45.455 10.89 0.74 42.26 2.75
2447 2869 2.170397 TCAGCACCAAGAACACTTGAGA 59.830 45.455 10.89 0.32 42.26 3.27
2448 2870 2.547211 CTCAGCACCAAGAACACTTGAG 59.453 50.000 10.89 5.20 42.26 3.02
2449 2871 2.092968 ACTCAGCACCAAGAACACTTGA 60.093 45.455 10.89 0.00 42.26 3.02
2450 2872 2.292267 ACTCAGCACCAAGAACACTTG 58.708 47.619 0.00 0.00 40.20 3.16
2451 2873 2.717639 ACTCAGCACCAAGAACACTT 57.282 45.000 0.00 0.00 0.00 3.16
2452 2874 3.393089 CTACTCAGCACCAAGAACACT 57.607 47.619 0.00 0.00 0.00 3.55
2465 2887 2.609427 TGGCTAGCATTGCTACTCAG 57.391 50.000 18.24 7.94 40.44 3.35
2466 2888 3.897505 TCTATGGCTAGCATTGCTACTCA 59.102 43.478 18.24 14.52 40.44 3.41
2467 2889 4.493547 CTCTATGGCTAGCATTGCTACTC 58.506 47.826 18.24 9.78 40.44 2.59
2468 2890 3.260380 CCTCTATGGCTAGCATTGCTACT 59.740 47.826 18.24 3.04 40.44 2.57
2469 2891 3.594134 CCTCTATGGCTAGCATTGCTAC 58.406 50.000 18.24 11.02 40.44 3.58
2470 2892 3.969287 CCTCTATGGCTAGCATTGCTA 57.031 47.619 18.24 17.11 40.44 3.49
2471 2893 2.855209 CCTCTATGGCTAGCATTGCT 57.145 50.000 18.24 16.63 43.41 3.91
2482 2904 4.646040 TGAATTGGACAAATGCCTCTATGG 59.354 41.667 0.00 0.00 39.35 2.74
2483 2905 5.840243 TGAATTGGACAAATGCCTCTATG 57.160 39.130 0.00 0.00 0.00 2.23
2484 2906 7.293073 AGTATGAATTGGACAAATGCCTCTAT 58.707 34.615 0.00 0.00 0.00 1.98
2485 2907 6.662755 AGTATGAATTGGACAAATGCCTCTA 58.337 36.000 0.00 0.00 0.00 2.43
2486 2908 5.513233 AGTATGAATTGGACAAATGCCTCT 58.487 37.500 0.00 0.00 0.00 3.69
2487 2909 5.841957 AGTATGAATTGGACAAATGCCTC 57.158 39.130 0.00 0.00 0.00 4.70
2488 2910 7.716799 TTTAGTATGAATTGGACAAATGCCT 57.283 32.000 0.00 0.00 0.00 4.75
2489 2911 8.947055 ATTTTAGTATGAATTGGACAAATGCC 57.053 30.769 0.00 0.00 0.00 4.40
2498 2920 9.817365 CGCATCTTCTATTTTAGTATGAATTGG 57.183 33.333 0.00 0.00 0.00 3.16
2502 2924 9.981114 TGATCGCATCTTCTATTTTAGTATGAA 57.019 29.630 0.00 0.00 0.00 2.57
2503 2925 9.981114 TTGATCGCATCTTCTATTTTAGTATGA 57.019 29.630 0.00 0.00 0.00 2.15
2505 2927 9.988815 AGTTGATCGCATCTTCTATTTTAGTAT 57.011 29.630 0.00 0.00 0.00 2.12
2506 2928 9.817809 AAGTTGATCGCATCTTCTATTTTAGTA 57.182 29.630 0.00 0.00 30.21 1.82
2507 2929 8.607459 CAAGTTGATCGCATCTTCTATTTTAGT 58.393 33.333 0.00 0.00 33.03 2.24
2508 2930 8.820933 TCAAGTTGATCGCATCTTCTATTTTAG 58.179 33.333 0.08 0.00 33.03 1.85
2509 2931 8.716646 TCAAGTTGATCGCATCTTCTATTTTA 57.283 30.769 0.08 0.00 33.03 1.52
2510 2932 7.201679 CCTCAAGTTGATCGCATCTTCTATTTT 60.202 37.037 5.91 0.00 33.03 1.82
2511 2933 6.259608 CCTCAAGTTGATCGCATCTTCTATTT 59.740 38.462 5.91 0.00 33.03 1.40
2512 2934 5.757320 CCTCAAGTTGATCGCATCTTCTATT 59.243 40.000 5.91 0.00 33.03 1.73
2513 2935 5.295950 CCTCAAGTTGATCGCATCTTCTAT 58.704 41.667 5.91 0.00 33.03 1.98
2514 2936 4.442052 CCCTCAAGTTGATCGCATCTTCTA 60.442 45.833 5.91 0.00 33.03 2.10
2515 2937 3.529533 CCTCAAGTTGATCGCATCTTCT 58.470 45.455 5.91 0.00 33.03 2.85
2516 2938 2.611292 CCCTCAAGTTGATCGCATCTTC 59.389 50.000 5.91 0.00 33.03 2.87
2517 2939 2.237143 TCCCTCAAGTTGATCGCATCTT 59.763 45.455 5.91 0.00 35.08 2.40
2518 2940 1.833630 TCCCTCAAGTTGATCGCATCT 59.166 47.619 5.91 0.00 0.00 2.90
2519 2941 2.315925 TCCCTCAAGTTGATCGCATC 57.684 50.000 5.91 0.00 0.00 3.91
2520 2942 2.787473 TTCCCTCAAGTTGATCGCAT 57.213 45.000 5.91 0.00 0.00 4.73
2521 2943 2.559698 TTTCCCTCAAGTTGATCGCA 57.440 45.000 5.91 0.00 0.00 5.10
2522 2944 3.074412 TCTTTTCCCTCAAGTTGATCGC 58.926 45.455 5.91 0.00 0.00 4.58
2523 2945 4.569943 TCTCTTTTCCCTCAAGTTGATCG 58.430 43.478 5.91 0.00 0.00 3.69
2524 2946 5.414144 CCTTCTCTTTTCCCTCAAGTTGATC 59.586 44.000 5.91 0.00 0.00 2.92
2525 2947 5.073691 TCCTTCTCTTTTCCCTCAAGTTGAT 59.926 40.000 5.91 0.00 0.00 2.57
2526 2948 4.412199 TCCTTCTCTTTTCCCTCAAGTTGA 59.588 41.667 5.25 5.25 0.00 3.18
2527 2949 4.718961 TCCTTCTCTTTTCCCTCAAGTTG 58.281 43.478 0.00 0.00 0.00 3.16
2528 2950 5.590976 ATCCTTCTCTTTTCCCTCAAGTT 57.409 39.130 0.00 0.00 0.00 2.66
2529 2951 5.590976 AATCCTTCTCTTTTCCCTCAAGT 57.409 39.130 0.00 0.00 0.00 3.16
2530 2952 6.491403 TGAAAATCCTTCTCTTTTCCCTCAAG 59.509 38.462 5.57 0.00 39.50 3.02
2531 2953 6.265422 GTGAAAATCCTTCTCTTTTCCCTCAA 59.735 38.462 5.57 0.00 39.50 3.02
2532 2954 5.770162 GTGAAAATCCTTCTCTTTTCCCTCA 59.230 40.000 5.57 0.00 39.50 3.86
2533 2955 6.007076 AGTGAAAATCCTTCTCTTTTCCCTC 58.993 40.000 5.57 0.00 39.50 4.30
2534 2956 5.772169 CAGTGAAAATCCTTCTCTTTTCCCT 59.228 40.000 5.57 0.00 39.50 4.20
2535 2957 5.536538 ACAGTGAAAATCCTTCTCTTTTCCC 59.463 40.000 0.00 0.00 39.50 3.97
2536 2958 6.641169 ACAGTGAAAATCCTTCTCTTTTCC 57.359 37.500 0.00 0.00 39.50 3.13
2541 2963 9.579932 AGAAATAAACAGTGAAAATCCTTCTCT 57.420 29.630 0.00 0.00 0.00 3.10
2542 2964 9.833182 GAGAAATAAACAGTGAAAATCCTTCTC 57.167 33.333 0.00 2.30 0.00 2.87
2543 2965 8.797438 GGAGAAATAAACAGTGAAAATCCTTCT 58.203 33.333 0.00 0.00 0.00 2.85
2544 2966 7.750903 CGGAGAAATAAACAGTGAAAATCCTTC 59.249 37.037 0.00 0.00 0.00 3.46
2545 2967 7.230712 ACGGAGAAATAAACAGTGAAAATCCTT 59.769 33.333 0.00 0.00 0.00 3.36
2546 2968 6.715264 ACGGAGAAATAAACAGTGAAAATCCT 59.285 34.615 0.00 0.00 0.00 3.24
2547 2969 6.909909 ACGGAGAAATAAACAGTGAAAATCC 58.090 36.000 0.00 0.00 0.00 3.01
2550 2972 9.672086 CAAATACGGAGAAATAAACAGTGAAAA 57.328 29.630 0.00 0.00 0.00 2.29
2551 2973 8.293867 CCAAATACGGAGAAATAAACAGTGAAA 58.706 33.333 0.00 0.00 0.00 2.69
2552 2974 7.446013 ACCAAATACGGAGAAATAAACAGTGAA 59.554 33.333 0.00 0.00 0.00 3.18
2553 2975 6.938030 ACCAAATACGGAGAAATAAACAGTGA 59.062 34.615 0.00 0.00 0.00 3.41
2554 2976 7.141100 ACCAAATACGGAGAAATAAACAGTG 57.859 36.000 0.00 0.00 0.00 3.66
2555 2977 7.754851 AACCAAATACGGAGAAATAAACAGT 57.245 32.000 0.00 0.00 0.00 3.55
2556 2978 9.471084 AAAAACCAAATACGGAGAAATAAACAG 57.529 29.630 0.00 0.00 0.00 3.16
2632 3054 8.541133 AAAAATTCAGTGAAAACCGAGAAAAA 57.459 26.923 10.14 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.