Multiple sequence alignment - TraesCS4B01G296200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G296200 chr4B 100.000 4638 0 0 1 4638 581539586 581534949 0.000000e+00 8565.0
1 TraesCS4B01G296200 chr4B 94.400 125 7 0 1589 1713 5276558 5276434 4.740000e-45 193.0
2 TraesCS4B01G296200 chr4B 90.984 122 11 0 3990 4111 105847565 105847444 1.030000e-36 165.0
3 TraesCS4B01G296200 chr4A 93.150 2321 107 19 1711 3993 5405259 5407565 0.000000e+00 3358.0
4 TraesCS4B01G296200 chr4A 89.866 1490 84 31 139 1590 5403816 5405276 0.000000e+00 1853.0
5 TraesCS4B01G296200 chr4A 91.160 181 6 4 4457 4627 5423740 5423920 2.160000e-58 237.0
6 TraesCS4B01G296200 chr4D 92.169 2337 111 32 1710 3993 465069548 465067231 0.000000e+00 3236.0
7 TraesCS4B01G296200 chr4D 86.663 1642 113 49 1 1590 465071117 465069530 0.000000e+00 1722.0
8 TraesCS4B01G296200 chr4D 85.019 267 14 9 4368 4627 465064930 465064683 9.970000e-62 248.0
9 TraesCS4B01G296200 chr4D 98.969 97 1 0 4107 4203 465067232 465067136 1.720000e-39 174.0
10 TraesCS4B01G296200 chr2D 84.884 430 65 0 1863 2292 367991306 367991735 7.130000e-118 435.0
11 TraesCS4B01G296200 chr2A 84.884 430 65 0 1863 2292 498086952 498087381 7.130000e-118 435.0
12 TraesCS4B01G296200 chr2B 84.651 430 66 0 1863 2292 436992754 436993183 3.320000e-116 429.0
13 TraesCS4B01G296200 chr2B 98.387 124 2 0 1589 1712 36603942 36604065 7.810000e-53 219.0
14 TraesCS4B01G296200 chr2B 91.736 121 9 1 3989 4108 541752451 541752571 2.870000e-37 167.0
15 TraesCS4B01G296200 chr2B 92.308 117 8 1 3992 4108 418663827 418663712 1.030000e-36 165.0
16 TraesCS4B01G296200 chr2B 92.647 68 4 1 4315 4381 37007493 37007560 3.820000e-16 97.1
17 TraesCS4B01G296200 chr7B 97.581 124 3 0 1589 1712 74761552 74761675 3.640000e-51 213.0
18 TraesCS4B01G296200 chr7B 95.968 124 5 0 1589 1712 707029214 707029091 7.870000e-48 202.0
19 TraesCS4B01G296200 chr7B 94.355 124 5 2 1590 1712 119313125 119313003 6.130000e-44 189.0
20 TraesCS4B01G296200 chr7B 92.308 117 9 0 3992 4108 568500340 568500456 2.870000e-37 167.0
21 TraesCS4B01G296200 chr7B 89.062 128 14 0 3985 4112 310416206 310416333 4.800000e-35 159.0
22 TraesCS4B01G296200 chr7B 93.056 72 3 2 4312 4381 667183778 667183707 2.280000e-18 104.0
23 TraesCS4B01G296200 chr7B 91.304 69 4 2 4315 4382 674226590 674226657 4.940000e-15 93.5
24 TraesCS4B01G296200 chr5B 96.774 124 3 1 1589 1712 398643999 398643877 6.080000e-49 206.0
25 TraesCS4B01G296200 chr5B 91.176 68 5 1 4315 4381 24417244 24417177 1.780000e-14 91.6
26 TraesCS4B01G296200 chr3B 96.774 124 3 1 1589 1712 43376493 43376371 6.080000e-49 206.0
27 TraesCS4B01G296200 chr1B 96.774 124 3 1 1589 1712 587025285 587025163 6.080000e-49 206.0
28 TraesCS4B01G296200 chr1B 92.373 118 9 0 3991 4108 362176624 362176741 7.980000e-38 169.0
29 TraesCS4B01G296200 chr7A 95.968 124 5 0 1589 1712 192671254 192671377 7.870000e-48 202.0
30 TraesCS4B01G296200 chrUn 92.308 117 9 0 3992 4108 59911076 59911192 2.870000e-37 167.0
31 TraesCS4B01G296200 chrUn 88.976 127 14 0 3982 4108 323578086 323577960 1.730000e-34 158.0
32 TraesCS4B01G296200 chr5D 90.909 121 11 0 3991 4111 498400417 498400297 3.710000e-36 163.0
33 TraesCS4B01G296200 chr3A 85.621 153 19 2 4380 4531 571396530 571396680 1.730000e-34 158.0
34 TraesCS4B01G296200 chr3A 91.176 68 5 1 4315 4381 477796382 477796449 1.780000e-14 91.6
35 TraesCS4B01G296200 chr7D 84.516 155 21 3 4380 4533 28441538 28441690 2.890000e-32 150.0
36 TraesCS4B01G296200 chr7D 88.312 77 7 2 4306 4381 39965591 39965666 1.780000e-14 91.6
37 TraesCS4B01G296200 chr7D 91.176 68 5 1 4315 4381 163046341 163046274 1.780000e-14 91.6
38 TraesCS4B01G296200 chr3D 84.516 155 21 2 4380 4533 433190590 433190742 2.890000e-32 150.0
39 TraesCS4B01G296200 chr1D 92.647 68 4 1 4315 4381 269811261 269811328 3.820000e-16 97.1
40 TraesCS4B01G296200 chr1A 91.549 71 5 1 4312 4381 23823580 23823650 3.820000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G296200 chr4B 581534949 581539586 4637 True 8565.0 8565 100.000 1 4638 1 chr4B.!!$R3 4637
1 TraesCS4B01G296200 chr4A 5403816 5407565 3749 False 2605.5 3358 91.508 139 3993 2 chr4A.!!$F2 3854
2 TraesCS4B01G296200 chr4D 465064683 465071117 6434 True 1345.0 3236 90.705 1 4627 4 chr4D.!!$R1 4626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1033 0.039708 GAACAGCCAGCAACTCAAGC 60.040 55.0 0.0 0.0 0.00 4.01 F
1622 1752 0.107945 GTGGCTACTTCTGGCTGGAG 60.108 60.0 0.0 0.0 0.00 3.86 F
1659 1789 0.108424 TGTGTGTTGGTTGCCTTTGC 60.108 50.0 0.0 0.0 38.26 3.68 F
1660 1790 0.175531 GTGTGTTGGTTGCCTTTGCT 59.824 50.0 0.0 0.0 38.71 3.91 F
1687 1817 0.178918 TAAAAAGTTGGGGCAGGGGG 60.179 55.0 0.0 0.0 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2147 0.035458 GGCAGATTATGACCCCTCCG 59.965 60.000 0.00 0.0 0.0 4.63 R
3394 3572 0.249031 TGTGCTGCGTCTGGATATCG 60.249 55.000 0.00 0.0 0.0 2.92 R
3435 3613 2.020100 TAGGCCCGCATCTCCTACCT 62.020 60.000 0.00 0.0 0.0 3.08 R
3550 3728 4.589216 TTGCTCCTGATTTTTCTGTTGG 57.411 40.909 0.00 0.0 0.0 3.77 R
3675 3862 1.381327 ACCTCGGGCAGCTTAGCTA 60.381 57.895 6.35 0.0 36.4 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.019559 GCTTTTTGTCTGTTTTCATTCAGTCC 60.020 38.462 0.00 0.00 33.89 3.85
40 41 3.804036 TGTCTGTTTTCATTCAGTCCGT 58.196 40.909 0.00 0.00 33.89 4.69
75 76 5.122711 CCACAAATTCAGAATGCCCAAAATC 59.877 40.000 0.00 0.00 34.76 2.17
101 102 0.539986 TCCACTATCAAACGCCTCCC 59.460 55.000 0.00 0.00 0.00 4.30
124 125 2.633657 CGCACAGAAAGCAAGCGT 59.366 55.556 0.00 0.00 43.08 5.07
136 137 0.716108 GCAAGCGTGTACACAGCTAG 59.284 55.000 31.16 16.36 39.13 3.42
144 145 0.388649 GTACACAGCTAGCGCACAGT 60.389 55.000 11.47 7.72 39.10 3.55
170 171 2.091112 CACTCGGACAGCAAGCTCG 61.091 63.158 0.00 0.00 0.00 5.03
172 173 4.742201 TCGGACAGCAAGCTCGCC 62.742 66.667 0.00 0.00 0.00 5.54
287 308 4.681978 ACTCGAACGGCTGCACCC 62.682 66.667 0.50 0.00 33.26 4.61
390 411 3.744426 CCCTTTGTTACTTGTACCGTCTG 59.256 47.826 0.00 0.00 0.00 3.51
657 679 1.645710 AATCAGGGGCCTATCTACGG 58.354 55.000 0.84 0.00 0.00 4.02
659 681 0.784495 TCAGGGGCCTATCTACGGAT 59.216 55.000 0.84 0.00 36.07 4.18
757 779 9.135189 TCATTTTTATTTATGTCTGATCTGGGG 57.865 33.333 0.00 0.00 0.00 4.96
758 780 9.135189 CATTTTTATTTATGTCTGATCTGGGGA 57.865 33.333 0.00 0.00 0.00 4.81
759 781 9.713684 ATTTTTATTTATGTCTGATCTGGGGAA 57.286 29.630 0.00 0.00 0.00 3.97
760 782 9.540538 TTTTTATTTATGTCTGATCTGGGGAAA 57.459 29.630 0.00 0.00 0.00 3.13
761 783 9.540538 TTTTATTTATGTCTGATCTGGGGAAAA 57.459 29.630 0.00 0.00 0.00 2.29
762 784 9.713684 TTTATTTATGTCTGATCTGGGGAAAAT 57.286 29.630 0.00 4.98 0.00 1.82
763 785 9.713684 TTATTTATGTCTGATCTGGGGAAAATT 57.286 29.630 0.00 0.00 0.00 1.82
764 786 7.645058 TTTATGTCTGATCTGGGGAAAATTC 57.355 36.000 0.00 0.00 0.00 2.17
765 787 4.656100 TGTCTGATCTGGGGAAAATTCA 57.344 40.909 0.00 0.00 0.00 2.57
766 788 5.197224 TGTCTGATCTGGGGAAAATTCAT 57.803 39.130 0.00 0.00 0.00 2.57
767 789 4.951715 TGTCTGATCTGGGGAAAATTCATG 59.048 41.667 0.00 0.00 0.00 3.07
768 790 4.952335 GTCTGATCTGGGGAAAATTCATGT 59.048 41.667 0.00 0.00 0.00 3.21
830 869 3.873952 GAGGAAACCAGATTCTGATTCCG 59.126 47.826 27.48 12.59 44.35 4.30
850 892 3.185797 CCGCTGTTTTCTTACTAAACGCT 59.814 43.478 0.00 0.00 38.11 5.07
851 893 4.319261 CCGCTGTTTTCTTACTAAACGCTT 60.319 41.667 0.00 0.00 38.11 4.68
907 949 1.666553 CGCCGTTTACCTGCTGTCA 60.667 57.895 0.00 0.00 0.00 3.58
908 950 1.019278 CGCCGTTTACCTGCTGTCAT 61.019 55.000 0.00 0.00 0.00 3.06
942 985 2.529151 CGTTGGCATAAAATCCAGCAC 58.471 47.619 0.00 0.00 33.83 4.40
945 988 0.752658 GGCATAAAATCCAGCACCCC 59.247 55.000 0.00 0.00 0.00 4.95
947 990 1.689258 GCATAAAATCCAGCACCCCCT 60.689 52.381 0.00 0.00 0.00 4.79
988 1033 0.039708 GAACAGCCAGCAACTCAAGC 60.040 55.000 0.00 0.00 0.00 4.01
989 1034 0.466922 AACAGCCAGCAACTCAAGCT 60.467 50.000 0.00 0.00 44.62 3.74
1029 1074 1.271488 ACGTCGGAGGAAGAGTCTCTT 60.271 52.381 15.14 15.14 39.87 2.85
1050 1095 2.282745 AGCTTCCAGCAGCAACCC 60.283 61.111 0.00 0.00 45.56 4.11
1056 1101 2.205152 CCAGCAGCAACCCAAGCTT 61.205 57.895 0.00 0.00 41.14 3.74
1134 1179 0.626382 AGAGACGAGGTCATCCAGGA 59.374 55.000 0.00 0.00 34.60 3.86
1177 1256 3.274095 TGTTGGTCTGATGAACACACA 57.726 42.857 1.57 0.00 40.00 3.72
1227 1306 5.160641 CACCAGATGAATGTTTAAAACGGG 58.839 41.667 0.00 0.00 0.00 5.28
1230 1309 5.047660 CCAGATGAATGTTTAAAACGGGGAA 60.048 40.000 0.00 0.00 0.00 3.97
1300 1417 6.808321 TCTTATTAGTACCTGGCAACTGAT 57.192 37.500 11.47 10.98 37.83 2.90
1316 1433 7.446319 TGGCAACTGATATATGGAAGATCAAAG 59.554 37.037 0.00 0.00 37.61 2.77
1351 1468 6.653320 TCAGTGTTGTATAGATTTGACCAACC 59.347 38.462 0.00 0.00 33.12 3.77
1356 1473 7.040755 TGTTGTATAGATTTGACCAACCAACTG 60.041 37.037 0.00 0.00 33.12 3.16
1373 1494 9.161629 CAACCAACTGATGATGTTATTACTGTA 57.838 33.333 0.00 0.00 0.00 2.74
1376 1497 8.703336 CCAACTGATGATGTTATTACTGTATCG 58.297 37.037 0.00 0.00 0.00 2.92
1535 1665 8.524870 ACTAAAGCATCACAAAATAAAGCAAG 57.475 30.769 0.00 0.00 0.00 4.01
1566 1696 0.670546 AGTTCAGACCGCCAATCACG 60.671 55.000 0.00 0.00 0.00 4.35
1577 1707 3.851403 CCGCCAATCACGTTTCTAATTTG 59.149 43.478 0.00 0.00 0.00 2.32
1578 1708 4.378978 CCGCCAATCACGTTTCTAATTTGA 60.379 41.667 0.00 0.00 0.00 2.69
1579 1709 5.150683 CGCCAATCACGTTTCTAATTTGAA 58.849 37.500 0.00 0.00 0.00 2.69
1580 1710 5.059221 CGCCAATCACGTTTCTAATTTGAAC 59.941 40.000 1.61 0.00 0.00 3.18
1581 1711 5.918011 GCCAATCACGTTTCTAATTTGAACA 59.082 36.000 1.61 0.00 0.00 3.18
1582 1712 6.129194 GCCAATCACGTTTCTAATTTGAACAC 60.129 38.462 1.61 4.06 0.00 3.32
1583 1713 6.915300 CCAATCACGTTTCTAATTTGAACACA 59.085 34.615 1.61 0.00 0.00 3.72
1584 1714 7.096640 CCAATCACGTTTCTAATTTGAACACAC 60.097 37.037 1.61 0.00 0.00 3.82
1585 1715 6.424176 TCACGTTTCTAATTTGAACACACA 57.576 33.333 1.61 0.00 0.00 3.72
1586 1716 6.843208 TCACGTTTCTAATTTGAACACACAA 58.157 32.000 1.61 0.00 0.00 3.33
1587 1717 7.306213 TCACGTTTCTAATTTGAACACACAAA 58.694 30.769 1.61 0.00 42.58 2.83
1589 1719 8.049592 CACGTTTCTAATTTGAACACACAAATG 58.950 33.333 1.61 0.00 45.71 2.32
1590 1720 7.757624 ACGTTTCTAATTTGAACACACAAATGT 59.242 29.630 1.61 0.00 45.71 2.71
1591 1721 9.227490 CGTTTCTAATTTGAACACACAAATGTA 57.773 29.630 1.61 0.00 45.71 2.29
1601 1731 8.741101 TGAACACACAAATGTAATAATTCTGC 57.259 30.769 0.00 0.00 36.72 4.26
1602 1732 8.575589 TGAACACACAAATGTAATAATTCTGCT 58.424 29.630 0.00 0.00 36.72 4.24
1603 1733 8.746922 AACACACAAATGTAATAATTCTGCTG 57.253 30.769 0.00 0.00 36.72 4.41
1604 1734 7.885297 ACACACAAATGTAATAATTCTGCTGT 58.115 30.769 0.00 0.00 36.72 4.40
1605 1735 7.809331 ACACACAAATGTAATAATTCTGCTGTG 59.191 33.333 0.00 0.00 36.72 3.66
1606 1736 7.274033 CACACAAATGTAATAATTCTGCTGTGG 59.726 37.037 0.00 0.00 36.72 4.17
1607 1737 6.254157 CACAAATGTAATAATTCTGCTGTGGC 59.746 38.462 0.00 0.00 39.26 5.01
1608 1738 6.153340 ACAAATGTAATAATTCTGCTGTGGCT 59.847 34.615 0.00 0.00 39.59 4.75
1609 1739 7.339212 ACAAATGTAATAATTCTGCTGTGGCTA 59.661 33.333 0.00 0.00 39.59 3.93
1610 1740 6.867662 ATGTAATAATTCTGCTGTGGCTAC 57.132 37.500 0.00 0.00 39.59 3.58
1611 1741 5.989477 TGTAATAATTCTGCTGTGGCTACT 58.011 37.500 0.64 0.00 39.59 2.57
1612 1742 6.414732 TGTAATAATTCTGCTGTGGCTACTT 58.585 36.000 0.64 0.00 39.59 2.24
1613 1743 6.538742 TGTAATAATTCTGCTGTGGCTACTTC 59.461 38.462 0.64 0.00 39.59 3.01
1614 1744 3.710209 AATTCTGCTGTGGCTACTTCT 57.290 42.857 0.64 0.00 39.59 2.85
1615 1745 2.462456 TTCTGCTGTGGCTACTTCTG 57.538 50.000 0.64 0.00 39.59 3.02
1616 1746 0.610174 TCTGCTGTGGCTACTTCTGG 59.390 55.000 0.64 0.00 39.59 3.86
1617 1747 1.003355 TGCTGTGGCTACTTCTGGC 60.003 57.895 0.64 0.00 39.59 4.85
1618 1748 1.298014 GCTGTGGCTACTTCTGGCT 59.702 57.895 0.64 0.00 35.22 4.75
1619 1749 1.023513 GCTGTGGCTACTTCTGGCTG 61.024 60.000 0.64 0.00 35.22 4.85
1620 1750 0.392193 CTGTGGCTACTTCTGGCTGG 60.392 60.000 0.64 0.00 0.00 4.85
1621 1751 0.835971 TGTGGCTACTTCTGGCTGGA 60.836 55.000 0.64 0.00 0.00 3.86
1622 1752 0.107945 GTGGCTACTTCTGGCTGGAG 60.108 60.000 0.00 0.00 0.00 3.86
1623 1753 1.153269 GGCTACTTCTGGCTGGAGC 60.153 63.158 0.00 0.00 41.14 4.70
1639 1769 4.177229 GCCGAGAGCTGTGAACTC 57.823 61.111 0.00 0.00 38.99 3.01
1641 1771 0.735632 GCCGAGAGCTGTGAACTCTG 60.736 60.000 0.00 0.00 44.50 3.35
1642 1772 0.600557 CCGAGAGCTGTGAACTCTGT 59.399 55.000 0.00 0.00 44.50 3.41
1643 1773 1.668337 CCGAGAGCTGTGAACTCTGTG 60.668 57.143 0.00 0.00 44.50 3.66
1644 1774 1.000827 CGAGAGCTGTGAACTCTGTGT 60.001 52.381 0.00 0.00 44.50 3.72
1645 1775 2.402305 GAGAGCTGTGAACTCTGTGTG 58.598 52.381 0.00 0.00 44.50 3.82
1646 1776 1.759445 AGAGCTGTGAACTCTGTGTGT 59.241 47.619 0.00 0.00 42.88 3.72
1647 1777 2.169352 AGAGCTGTGAACTCTGTGTGTT 59.831 45.455 0.00 0.00 42.88 3.32
1648 1778 2.283298 AGCTGTGAACTCTGTGTGTTG 58.717 47.619 0.00 0.00 0.00 3.33
1649 1779 1.331756 GCTGTGAACTCTGTGTGTTGG 59.668 52.381 0.00 0.00 0.00 3.77
1650 1780 2.632377 CTGTGAACTCTGTGTGTTGGT 58.368 47.619 0.00 0.00 0.00 3.67
1651 1781 3.009723 CTGTGAACTCTGTGTGTTGGTT 58.990 45.455 0.00 0.00 0.00 3.67
1652 1782 2.746904 TGTGAACTCTGTGTGTTGGTTG 59.253 45.455 0.00 0.00 0.00 3.77
1653 1783 1.742831 TGAACTCTGTGTGTTGGTTGC 59.257 47.619 0.00 0.00 0.00 4.17
1654 1784 1.065551 GAACTCTGTGTGTTGGTTGCC 59.934 52.381 0.00 0.00 0.00 4.52
1655 1785 0.255890 ACTCTGTGTGTTGGTTGCCT 59.744 50.000 0.00 0.00 0.00 4.75
1656 1786 1.340991 ACTCTGTGTGTTGGTTGCCTT 60.341 47.619 0.00 0.00 0.00 4.35
1657 1787 1.750778 CTCTGTGTGTTGGTTGCCTTT 59.249 47.619 0.00 0.00 0.00 3.11
1658 1788 1.476085 TCTGTGTGTTGGTTGCCTTTG 59.524 47.619 0.00 0.00 0.00 2.77
1659 1789 0.108424 TGTGTGTTGGTTGCCTTTGC 60.108 50.000 0.00 0.00 38.26 3.68
1660 1790 0.175531 GTGTGTTGGTTGCCTTTGCT 59.824 50.000 0.00 0.00 38.71 3.91
1661 1791 0.901124 TGTGTTGGTTGCCTTTGCTT 59.099 45.000 0.00 0.00 38.71 3.91
1662 1792 1.277557 TGTGTTGGTTGCCTTTGCTTT 59.722 42.857 0.00 0.00 38.71 3.51
1663 1793 2.289945 TGTGTTGGTTGCCTTTGCTTTT 60.290 40.909 0.00 0.00 38.71 2.27
1664 1794 2.746904 GTGTTGGTTGCCTTTGCTTTTT 59.253 40.909 0.00 0.00 38.71 1.94
1665 1795 3.006247 TGTTGGTTGCCTTTGCTTTTTC 58.994 40.909 0.00 0.00 38.71 2.29
1666 1796 3.006247 GTTGGTTGCCTTTGCTTTTTCA 58.994 40.909 0.00 0.00 38.71 2.69
1667 1797 3.340814 TGGTTGCCTTTGCTTTTTCAA 57.659 38.095 0.00 0.00 38.71 2.69
1668 1798 3.883669 TGGTTGCCTTTGCTTTTTCAAT 58.116 36.364 0.00 0.00 38.71 2.57
1669 1799 5.028549 TGGTTGCCTTTGCTTTTTCAATA 57.971 34.783 0.00 0.00 38.71 1.90
1670 1800 5.431765 TGGTTGCCTTTGCTTTTTCAATAA 58.568 33.333 0.00 0.00 38.71 1.40
1671 1801 5.882557 TGGTTGCCTTTGCTTTTTCAATAAA 59.117 32.000 0.00 0.00 38.71 1.40
1672 1802 6.375455 TGGTTGCCTTTGCTTTTTCAATAAAA 59.625 30.769 0.00 0.00 38.71 1.52
1673 1803 7.094205 TGGTTGCCTTTGCTTTTTCAATAAAAA 60.094 29.630 0.00 0.00 41.32 1.94
1683 1813 6.934048 TTTTTCAATAAAAAGTTGGGGCAG 57.066 33.333 0.00 0.00 39.16 4.85
1684 1814 4.615588 TTCAATAAAAAGTTGGGGCAGG 57.384 40.909 0.00 0.00 0.00 4.85
1685 1815 2.903135 TCAATAAAAAGTTGGGGCAGGG 59.097 45.455 0.00 0.00 0.00 4.45
1686 1816 1.951209 ATAAAAAGTTGGGGCAGGGG 58.049 50.000 0.00 0.00 0.00 4.79
1687 1817 0.178918 TAAAAAGTTGGGGCAGGGGG 60.179 55.000 0.00 0.00 0.00 5.40
1704 1834 3.260931 GGCGACCCCTTTCGTTTC 58.739 61.111 0.00 0.00 41.26 2.78
1705 1835 1.598685 GGCGACCCCTTTCGTTTCA 60.599 57.895 0.00 0.00 41.26 2.69
1706 1836 1.167781 GGCGACCCCTTTCGTTTCAA 61.168 55.000 0.00 0.00 41.26 2.69
1707 1837 0.664224 GCGACCCCTTTCGTTTCAAA 59.336 50.000 0.00 0.00 41.26 2.69
1708 1838 1.065851 GCGACCCCTTTCGTTTCAAAA 59.934 47.619 0.00 0.00 41.26 2.44
1709 1839 2.479901 GCGACCCCTTTCGTTTCAAAAA 60.480 45.455 0.00 0.00 41.26 1.94
1760 1891 7.339466 AGGAATTGCAAACGGATACTAAAGAAT 59.661 33.333 1.71 0.00 0.00 2.40
1764 1895 8.958119 TTGCAAACGGATACTAAAGAATAGAT 57.042 30.769 0.00 0.00 0.00 1.98
1980 2131 2.118403 AGGGTTTCCAGAGAGACCAA 57.882 50.000 5.29 0.00 46.83 3.67
1996 2147 0.895559 CCAAAACCTCCAGCTCCACC 60.896 60.000 0.00 0.00 0.00 4.61
2065 2216 4.744570 TGACGCTAAGAAGAAGGTGTATG 58.255 43.478 0.00 0.00 0.00 2.39
2073 2224 1.958288 AGAAGGTGTATGTCTGCCCT 58.042 50.000 0.00 0.00 0.00 5.19
2088 2239 2.608988 CCTGAGGTCACCTGCCCT 60.609 66.667 0.00 0.00 31.76 5.19
2091 2242 3.732938 GAGGTCACCTGCCCTCAT 58.267 61.111 0.00 0.00 45.47 2.90
2094 2245 1.078143 GGTCACCTGCCCTCATCAC 60.078 63.158 0.00 0.00 0.00 3.06
2097 2248 1.448540 CACCTGCCCTCATCACGAC 60.449 63.158 0.00 0.00 0.00 4.34
2100 2251 4.451150 TGCCCTCATCACGACGCC 62.451 66.667 0.00 0.00 0.00 5.68
2178 2329 2.333014 GAGAAGAAGTGGAAGTGCGAG 58.667 52.381 0.00 0.00 0.00 5.03
2179 2330 1.964223 AGAAGAAGTGGAAGTGCGAGA 59.036 47.619 0.00 0.00 0.00 4.04
2211 2362 4.764172 AGAAGTATGCTGTCCAATCTGAC 58.236 43.478 0.00 0.00 35.77 3.51
2241 2392 3.780902 TCACACTAAGATATGTGGCACG 58.219 45.455 13.77 0.00 45.16 5.34
2256 2407 1.146358 GCACGAAGGAGTACCGATGC 61.146 60.000 0.00 0.00 41.83 3.91
2295 2446 5.489792 TCTCAAGGTATGCTTCTCACTTT 57.510 39.130 0.00 0.00 0.00 2.66
2408 2574 7.145932 AGGTCATTCAGTAAAATAACAGTGC 57.854 36.000 0.00 0.00 0.00 4.40
2429 2595 3.681855 CATGTAGACCGAAGTACTGACG 58.318 50.000 13.47 13.47 0.00 4.35
2527 2696 5.867716 GTCTCTGTTGCTTACGAGGAAAATA 59.132 40.000 0.00 0.00 34.84 1.40
2537 2712 9.615295 TGCTTACGAGGAAAATATTGTTTTTAC 57.385 29.630 0.00 0.00 30.82 2.01
2567 2742 9.811995 TCCATATTCACACAGTTTACATACTAC 57.188 33.333 0.00 0.00 0.00 2.73
2568 2743 9.817809 CCATATTCACACAGTTTACATACTACT 57.182 33.333 0.00 0.00 0.00 2.57
2585 2760 8.906867 ACATACTACTATTTGAAGCAATGCATT 58.093 29.630 5.99 5.99 0.00 3.56
2643 2818 7.343057 TGGGAGTATCATATTAGACTAGCCATG 59.657 40.741 0.00 0.00 36.25 3.66
2677 2852 3.198200 AGCCATGCCATTTAAAATGCAGA 59.802 39.130 16.83 0.00 37.12 4.26
2678 2853 3.310501 GCCATGCCATTTAAAATGCAGAC 59.689 43.478 16.83 8.02 37.12 3.51
2694 2869 3.244215 TGCAGACTTTCTTGGAACTCGAT 60.244 43.478 0.00 0.00 0.00 3.59
2767 2942 2.548920 GGCCTTCTGCGATGTATTAGCT 60.549 50.000 0.00 0.00 42.61 3.32
3055 3230 2.979814 TGAACTCCCCATACATGTCG 57.020 50.000 0.00 0.00 0.00 4.35
3106 3281 1.228552 GGGAGCAAAGACCAGCCAA 60.229 57.895 0.00 0.00 0.00 4.52
3128 3303 3.703052 AGATCCCATTTCACCATTGCTTC 59.297 43.478 0.00 0.00 0.00 3.86
3244 3419 0.668401 GTGTTTGCATGAAGGCTGCC 60.668 55.000 11.65 11.65 38.89 4.85
3394 3572 1.003003 GAGAGCCCTCAGATTATGCCC 59.997 57.143 0.00 0.00 39.24 5.36
3435 3613 5.652014 ACAACAGACAGGAAAACATTTCAGA 59.348 36.000 5.32 0.00 0.00 3.27
3487 3665 0.979187 TAGGGTTAGGAGGCAACGGG 60.979 60.000 0.00 0.00 46.39 5.28
3571 3749 3.960102 ACCAACAGAAAAATCAGGAGCAA 59.040 39.130 0.00 0.00 0.00 3.91
3589 3767 6.769822 AGGAGCAAATGTATTCTTACCATGAG 59.230 38.462 0.00 0.00 0.00 2.90
3646 3833 2.423185 GTGGGATTCATGATGCAAACGA 59.577 45.455 0.00 0.00 0.00 3.85
3661 3848 3.751698 GCAAACGATTTCCTTACTCTGGT 59.248 43.478 0.00 0.00 0.00 4.00
3662 3849 4.933400 GCAAACGATTTCCTTACTCTGGTA 59.067 41.667 0.00 0.00 0.00 3.25
3663 3850 5.163884 GCAAACGATTTCCTTACTCTGGTAC 60.164 44.000 0.00 0.00 0.00 3.34
3675 3862 7.508296 TCCTTACTCTGGTACTAGTTCAGTTTT 59.492 37.037 19.03 10.99 38.80 2.43
3702 3889 1.987213 TGCCCGAGGTGCAGAATTA 59.013 52.632 0.00 0.00 34.05 1.40
3710 3897 3.248602 CGAGGTGCAGAATTAGCCATTAC 59.751 47.826 0.00 0.00 0.00 1.89
3711 3898 3.555966 AGGTGCAGAATTAGCCATTACC 58.444 45.455 0.00 0.00 0.00 2.85
3735 3924 5.398603 AGGTATAGCATGTATGAGACAGC 57.601 43.478 4.48 0.00 42.79 4.40
3736 3925 4.835056 AGGTATAGCATGTATGAGACAGCA 59.165 41.667 4.48 0.00 42.79 4.41
3804 3993 5.151297 ACCATTTTATTGGCAAACTCAGG 57.849 39.130 3.01 5.26 40.68 3.86
3816 4005 0.615850 AACTCAGGAAGTAGCCAGGC 59.384 55.000 1.84 1.84 37.17 4.85
3838 4027 5.047092 GGCAATCTTATCAACATAATGGGGG 60.047 44.000 0.00 0.00 0.00 5.40
3848 4037 1.368268 ATAATGGGGGCATTCGGGGT 61.368 55.000 0.00 0.00 0.00 4.95
3887 4076 7.910441 ATTGTATTTTCCTTTGGCAGAAATG 57.090 32.000 1.81 0.00 32.33 2.32
3997 4186 5.690865 TGGGATCAACAATGTTATACTCCC 58.309 41.667 19.23 19.23 40.22 4.30
3998 4187 5.431731 TGGGATCAACAATGTTATACTCCCT 59.568 40.000 23.09 0.00 40.41 4.20
3999 4188 5.998363 GGGATCAACAATGTTATACTCCCTC 59.002 44.000 18.97 3.39 37.43 4.30
4000 4189 5.998363 GGATCAACAATGTTATACTCCCTCC 59.002 44.000 0.00 0.00 0.00 4.30
4001 4190 5.018539 TCAACAATGTTATACTCCCTCCG 57.981 43.478 0.00 0.00 0.00 4.63
4002 4191 4.468510 TCAACAATGTTATACTCCCTCCGT 59.531 41.667 0.00 0.00 0.00 4.69
4003 4192 4.667519 ACAATGTTATACTCCCTCCGTC 57.332 45.455 0.00 0.00 0.00 4.79
4004 4193 3.387050 ACAATGTTATACTCCCTCCGTCC 59.613 47.826 0.00 0.00 0.00 4.79
4005 4194 2.077687 TGTTATACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
4006 4195 1.288633 TGTTATACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
4007 4196 2.292389 TGTTATACTCCCTCCGTCCCAA 60.292 50.000 0.00 0.00 0.00 4.12
4008 4197 2.767960 GTTATACTCCCTCCGTCCCAAA 59.232 50.000 0.00 0.00 0.00 3.28
4009 4198 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4010 4199 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4011 4200 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4012 4201 1.558294 ACTCCCTCCGTCCCAAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
4013 4202 1.838077 CTCCCTCCGTCCCAAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
4014 4203 2.238898 CTCCCTCCGTCCCAAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
4015 4204 2.026636 TCCCTCCGTCCCAAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
4016 4205 2.290705 CCCTCCGTCCCAAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
4017 4206 3.007635 CCTCCGTCCCAAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
4018 4207 2.671396 CTCCGTCCCAAAATACTTGTCG 59.329 50.000 0.00 0.00 0.00 4.35
4019 4208 1.735571 CCGTCCCAAAATACTTGTCGG 59.264 52.381 0.00 0.00 0.00 4.79
4020 4209 2.613474 CCGTCCCAAAATACTTGTCGGA 60.613 50.000 0.00 0.00 38.03 4.55
4021 4210 2.671396 CGTCCCAAAATACTTGTCGGAG 59.329 50.000 0.00 0.00 0.00 4.63
4022 4211 3.007635 GTCCCAAAATACTTGTCGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4023 4212 2.907696 TCCCAAAATACTTGTCGGAGGA 59.092 45.455 0.00 0.00 0.00 3.71
4024 4213 3.328343 TCCCAAAATACTTGTCGGAGGAA 59.672 43.478 0.00 0.00 0.00 3.36
4025 4214 4.018779 TCCCAAAATACTTGTCGGAGGAAT 60.019 41.667 0.00 0.00 0.00 3.01
4026 4215 4.096382 CCCAAAATACTTGTCGGAGGAATG 59.904 45.833 0.00 0.00 0.00 2.67
4027 4216 4.096382 CCAAAATACTTGTCGGAGGAATGG 59.904 45.833 0.00 0.00 0.00 3.16
4028 4217 4.837093 AAATACTTGTCGGAGGAATGGA 57.163 40.909 0.00 0.00 0.00 3.41
4029 4218 3.821421 ATACTTGTCGGAGGAATGGAC 57.179 47.619 0.00 0.00 0.00 4.02
4030 4219 0.246635 ACTTGTCGGAGGAATGGACG 59.753 55.000 0.00 0.00 33.45 4.79
4031 4220 0.246635 CTTGTCGGAGGAATGGACGT 59.753 55.000 0.00 0.00 33.45 4.34
4032 4221 1.475280 CTTGTCGGAGGAATGGACGTA 59.525 52.381 0.00 0.00 33.45 3.57
4033 4222 1.771565 TGTCGGAGGAATGGACGTAT 58.228 50.000 0.00 0.00 33.45 3.06
4034 4223 1.679680 TGTCGGAGGAATGGACGTATC 59.320 52.381 0.00 0.00 33.45 2.24
4035 4224 1.955080 GTCGGAGGAATGGACGTATCT 59.045 52.381 0.00 0.00 0.00 1.98
4036 4225 3.144506 GTCGGAGGAATGGACGTATCTA 58.855 50.000 0.00 0.00 0.00 1.98
4037 4226 3.188873 GTCGGAGGAATGGACGTATCTAG 59.811 52.174 0.00 0.00 0.00 2.43
4038 4227 3.072038 TCGGAGGAATGGACGTATCTAGA 59.928 47.826 0.00 0.00 0.00 2.43
4039 4228 4.011023 CGGAGGAATGGACGTATCTAGAT 58.989 47.826 10.73 10.73 0.00 1.98
4040 4229 4.142578 CGGAGGAATGGACGTATCTAGATG 60.143 50.000 15.79 1.92 0.00 2.90
4041 4230 4.767928 GGAGGAATGGACGTATCTAGATGT 59.232 45.833 15.79 5.44 0.00 3.06
4042 4231 5.944599 GGAGGAATGGACGTATCTAGATGTA 59.055 44.000 15.79 0.00 0.00 2.29
4043 4232 6.603997 GGAGGAATGGACGTATCTAGATGTAT 59.396 42.308 15.79 0.00 0.00 2.29
4044 4233 7.122948 GGAGGAATGGACGTATCTAGATGTATT 59.877 40.741 15.79 3.66 0.00 1.89
4045 4234 8.423906 AGGAATGGACGTATCTAGATGTATTT 57.576 34.615 15.79 1.04 0.00 1.40
4046 4235 8.871125 AGGAATGGACGTATCTAGATGTATTTT 58.129 33.333 15.79 0.90 0.00 1.82
4082 4271 8.842358 ACATTCCTTTTTAGTCATTTCTACGA 57.158 30.769 0.00 0.00 0.00 3.43
4083 4272 8.718734 ACATTCCTTTTTAGTCATTTCTACGAC 58.281 33.333 0.00 0.00 0.00 4.34
4084 4273 8.717821 CATTCCTTTTTAGTCATTTCTACGACA 58.282 33.333 0.00 0.00 34.48 4.35
4085 4274 8.665643 TTCCTTTTTAGTCATTTCTACGACAA 57.334 30.769 0.00 0.00 34.48 3.18
4086 4275 8.306680 TCCTTTTTAGTCATTTCTACGACAAG 57.693 34.615 0.00 0.00 34.48 3.16
4087 4276 7.929785 TCCTTTTTAGTCATTTCTACGACAAGT 59.070 33.333 0.00 0.00 34.48 3.16
4088 4277 9.199982 CCTTTTTAGTCATTTCTACGACAAGTA 57.800 33.333 0.00 0.00 34.48 2.24
4093 4282 7.829378 AGTCATTTCTACGACAAGTATTTCC 57.171 36.000 0.00 0.00 34.34 3.13
4094 4283 6.530534 AGTCATTTCTACGACAAGTATTTCCG 59.469 38.462 0.00 0.00 34.34 4.30
4095 4284 5.808540 TCATTTCTACGACAAGTATTTCCGG 59.191 40.000 0.00 0.00 34.34 5.14
4096 4285 5.389859 TTTCTACGACAAGTATTTCCGGA 57.610 39.130 0.00 0.00 34.34 5.14
4097 4286 4.361451 TCTACGACAAGTATTTCCGGAC 57.639 45.455 1.83 0.00 34.34 4.79
4098 4287 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
4099 4288 1.541147 ACGACAAGTATTTCCGGACGA 59.459 47.619 1.83 0.00 0.00 4.20
4100 4289 2.030007 ACGACAAGTATTTCCGGACGAA 60.030 45.455 1.83 0.00 0.00 3.85
4101 4290 2.597305 CGACAAGTATTTCCGGACGAAG 59.403 50.000 1.83 0.00 0.00 3.79
4102 4291 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
4103 4292 2.277084 CAAGTATTTCCGGACGAAGGG 58.723 52.381 1.83 0.00 0.00 3.95
4104 4293 1.856629 AGTATTTCCGGACGAAGGGA 58.143 50.000 1.83 0.00 0.00 4.20
4105 4294 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
4178 4367 5.885912 TCTAGCCCTTGCCATAAACTTTAAG 59.114 40.000 0.00 0.00 38.69 1.85
4218 6495 2.552315 TGCTTATATAGGCGCTTTTGGC 59.448 45.455 7.64 2.86 37.64 4.52
4269 6547 2.568623 AGCGTCCTTTCTTCCAATGT 57.431 45.000 0.00 0.00 0.00 2.71
4284 6562 2.942376 CCAATGTCAGGCGCTAATAACA 59.058 45.455 7.64 5.73 0.00 2.41
4285 6563 3.002656 CCAATGTCAGGCGCTAATAACAG 59.997 47.826 7.64 0.00 0.00 3.16
4290 6568 0.106894 AGGCGCTAATAACAGGCTCC 59.893 55.000 7.64 0.00 34.24 4.70
4295 6573 3.304057 GCGCTAATAACAGGCTCCAATTC 60.304 47.826 0.00 0.00 0.00 2.17
4302 6580 9.220767 CTAATAACAGGCTCCAATTCCTATTAC 57.779 37.037 0.00 0.00 25.55 1.89
4303 6581 5.717119 AACAGGCTCCAATTCCTATTACT 57.283 39.130 0.00 0.00 0.00 2.24
4304 6582 5.717119 ACAGGCTCCAATTCCTATTACTT 57.283 39.130 0.00 0.00 0.00 2.24
4305 6583 5.685728 ACAGGCTCCAATTCCTATTACTTC 58.314 41.667 0.00 0.00 0.00 3.01
4306 6584 4.752101 CAGGCTCCAATTCCTATTACTTCG 59.248 45.833 0.00 0.00 0.00 3.79
4307 6585 4.409247 AGGCTCCAATTCCTATTACTTCGT 59.591 41.667 0.00 0.00 0.00 3.85
4308 6586 5.601313 AGGCTCCAATTCCTATTACTTCGTA 59.399 40.000 0.00 0.00 0.00 3.43
4309 6587 5.927115 GGCTCCAATTCCTATTACTTCGTAG 59.073 44.000 0.00 0.00 0.00 3.51
4310 6588 6.462628 GGCTCCAATTCCTATTACTTCGTAGT 60.463 42.308 0.00 0.00 38.44 2.73
4311 6589 7.255730 GGCTCCAATTCCTATTACTTCGTAGTA 60.256 40.741 0.00 0.00 35.78 1.82
4312 6590 7.808856 GCTCCAATTCCTATTACTTCGTAGTAG 59.191 40.741 2.04 0.00 38.09 2.57
4313 6591 8.174733 TCCAATTCCTATTACTTCGTAGTAGG 57.825 38.462 13.42 13.42 44.55 3.18
4409 6687 2.718073 CCCAACCCTCTCGTACGGG 61.718 68.421 16.52 13.21 46.26 5.28
4415 6693 0.455005 CCCTCTCGTACGGGAAAGAC 59.545 60.000 20.08 0.00 43.44 3.01
4452 6730 3.921119 TGCTTTTCTTTGCATCGATGT 57.079 38.095 25.47 0.00 33.94 3.06
4453 6731 3.825308 TGCTTTTCTTTGCATCGATGTC 58.175 40.909 25.47 17.83 33.94 3.06
4454 6732 3.252944 TGCTTTTCTTTGCATCGATGTCA 59.747 39.130 25.47 20.02 33.94 3.58
4455 6733 3.605486 GCTTTTCTTTGCATCGATGTCAC 59.395 43.478 25.47 10.58 0.00 3.67
4456 6734 4.786507 CTTTTCTTTGCATCGATGTCACA 58.213 39.130 25.47 13.07 0.00 3.58
4457 6735 3.811722 TTCTTTGCATCGATGTCACAC 57.188 42.857 25.47 9.86 0.00 3.82
4458 6736 3.044235 TCTTTGCATCGATGTCACACT 57.956 42.857 25.47 0.00 0.00 3.55
4459 6737 3.402110 TCTTTGCATCGATGTCACACTT 58.598 40.909 25.47 0.00 0.00 3.16
4460 6738 4.565022 TCTTTGCATCGATGTCACACTTA 58.435 39.130 25.47 7.07 0.00 2.24
4461 6739 4.627035 TCTTTGCATCGATGTCACACTTAG 59.373 41.667 25.47 12.16 0.00 2.18
4462 6740 3.592898 TGCATCGATGTCACACTTAGT 57.407 42.857 25.47 0.00 0.00 2.24
4530 6808 3.555324 GCCCTGGCCTAGCTCCTC 61.555 72.222 3.32 0.00 34.56 3.71
4540 6824 1.075226 TAGCTCCTCCCGATGGCTT 60.075 57.895 0.00 0.00 34.88 4.35
4562 6846 2.134789 GTCCCTAGACGAACTACCCA 57.865 55.000 0.00 0.00 32.18 4.51
4563 6847 1.747924 GTCCCTAGACGAACTACCCAC 59.252 57.143 0.00 0.00 32.18 4.61
4584 6869 5.221742 CCACAAAACTTAACTCCCTCTCTCT 60.222 44.000 0.00 0.00 0.00 3.10
4631 6916 8.929827 CATGCATAGACATGGAAATGTAAAAA 57.070 30.769 0.00 0.00 43.05 1.94
4632 6917 8.810427 CATGCATAGACATGGAAATGTAAAAAC 58.190 33.333 0.00 0.00 43.05 2.43
4633 6918 7.890515 TGCATAGACATGGAAATGTAAAAACA 58.109 30.769 0.00 0.00 34.45 2.83
4634 6919 8.530311 TGCATAGACATGGAAATGTAAAAACAT 58.470 29.630 0.00 0.00 34.45 2.71
4635 6920 8.810427 GCATAGACATGGAAATGTAAAAACATG 58.190 33.333 0.00 0.00 40.94 3.21
4636 6921 8.810427 CATAGACATGGAAATGTAAAAACATGC 58.190 33.333 0.00 0.00 39.30 4.06
4637 6922 5.863397 AGACATGGAAATGTAAAAACATGCG 59.137 36.000 0.00 0.00 39.30 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.019559 GGACTGAATGAAAACAGACAAAAAGC 60.020 38.462 0.00 0.00 37.54 3.51
38 39 2.709125 TTTGTGGCCCGACTCAGACG 62.709 60.000 0.00 0.00 0.00 4.18
40 41 0.400213 AATTTGTGGCCCGACTCAGA 59.600 50.000 0.00 0.00 0.00 3.27
75 76 4.821805 AGGCGTTTGATAGTGGATTATTGG 59.178 41.667 0.00 0.00 0.00 3.16
101 102 2.908634 CTTGCTTTCTGTGCGTGTTAG 58.091 47.619 0.00 0.00 0.00 2.34
123 124 0.666274 TGTGCGCTAGCTGTGTACAC 60.666 55.000 19.36 19.36 44.51 2.90
124 125 0.388520 CTGTGCGCTAGCTGTGTACA 60.389 55.000 13.93 11.92 46.51 2.90
144 145 3.207547 CTGTCCGAGTGTGCGTGGA 62.208 63.158 0.00 0.00 0.00 4.02
287 308 0.035458 ACCCCTGCTTCTTCTTCGTG 59.965 55.000 0.00 0.00 0.00 4.35
390 411 1.226831 GTACTCGAGAGCAGGCAGC 60.227 63.158 21.68 0.00 46.19 5.25
518 539 6.184789 TCACCCTGGGTAAGTAAATCAATTC 58.815 40.000 20.09 0.00 32.11 2.17
749 771 5.595542 TCATCACATGAATTTTCCCCAGATC 59.404 40.000 0.00 0.00 36.11 2.75
750 772 5.521696 TCATCACATGAATTTTCCCCAGAT 58.478 37.500 0.00 0.00 36.11 2.90
751 773 4.933134 TCATCACATGAATTTTCCCCAGA 58.067 39.130 0.00 0.00 36.11 3.86
752 774 5.664294 TTCATCACATGAATTTTCCCCAG 57.336 39.130 0.00 0.00 43.84 4.45
783 822 2.423538 GGCACGGAATGTTCTGCTTATT 59.576 45.455 1.56 0.00 37.06 1.40
788 827 0.109597 CTTGGCACGGAATGTTCTGC 60.110 55.000 1.56 0.67 37.06 4.26
830 869 4.378910 GCAAGCGTTTAGTAAGAAAACAGC 59.621 41.667 0.00 0.00 36.78 4.40
850 892 0.821301 TGTCAAGGACGGCAATGCAA 60.821 50.000 7.79 0.00 34.95 4.08
851 893 1.228094 TGTCAAGGACGGCAATGCA 60.228 52.632 7.79 0.00 34.95 3.96
907 949 1.229428 CAACGGTGAGACTGCAACAT 58.771 50.000 0.00 0.00 0.00 2.71
908 950 0.813610 CCAACGGTGAGACTGCAACA 60.814 55.000 0.00 0.00 0.00 3.33
942 985 2.584608 CCAGCGTAGTGAAGGGGG 59.415 66.667 0.00 0.00 0.00 5.40
945 988 1.741770 GGTGCCAGCGTAGTGAAGG 60.742 63.158 0.00 0.00 0.00 3.46
947 990 2.167398 GAGGGTGCCAGCGTAGTGAA 62.167 60.000 0.00 0.00 0.00 3.18
988 1033 0.950836 TGCGACATTGTTGTTGGGAG 59.049 50.000 5.93 0.00 37.66 4.30
989 1034 0.665835 GTGCGACATTGTTGTTGGGA 59.334 50.000 5.93 0.00 37.66 4.37
1050 1095 3.793144 GCGCCGACCTCAAGCTTG 61.793 66.667 20.81 20.81 0.00 4.01
1134 1179 8.650143 ACAATAGTTGAAACATACCTGGATTT 57.350 30.769 0.00 0.00 0.00 2.17
1186 1265 9.223099 CATCTGGTGCATCTCATTGTTATATTA 57.777 33.333 0.00 0.00 0.00 0.98
1227 1306 4.217754 TCTAACAAAACATGCACGTTCC 57.782 40.909 0.00 0.00 0.00 3.62
1230 1309 5.065988 AGACTTTCTAACAAAACATGCACGT 59.934 36.000 0.00 0.00 0.00 4.49
1239 1356 9.233649 TGGTAAACTTGAGACTTTCTAACAAAA 57.766 29.630 0.00 0.00 0.00 2.44
1274 1391 6.439375 TCAGTTGCCAGGTACTAATAAGAAGA 59.561 38.462 0.00 0.00 36.02 2.87
1275 1392 6.640518 TCAGTTGCCAGGTACTAATAAGAAG 58.359 40.000 0.00 0.00 36.02 2.85
1282 1399 6.785466 TCCATATATCAGTTGCCAGGTACTAA 59.215 38.462 0.00 0.00 36.02 2.24
1283 1400 6.319715 TCCATATATCAGTTGCCAGGTACTA 58.680 40.000 0.00 0.00 36.02 1.82
1284 1401 5.155161 TCCATATATCAGTTGCCAGGTACT 58.845 41.667 0.00 0.00 43.88 2.73
1285 1402 5.483685 TCCATATATCAGTTGCCAGGTAC 57.516 43.478 0.00 0.00 0.00 3.34
1291 1408 7.446625 ACTTTGATCTTCCATATATCAGTTGCC 59.553 37.037 0.00 0.00 31.64 4.52
1300 1417 7.861629 ACAAGGACACTTTGATCTTCCATATA 58.138 34.615 0.00 0.00 33.81 0.86
1316 1433 6.220930 TCTATACAACACTGAACAAGGACAC 58.779 40.000 0.00 0.00 0.00 3.67
1351 1468 9.249457 ACGATACAGTAATAACATCATCAGTTG 57.751 33.333 0.00 0.00 0.00 3.16
1499 1627 5.709631 TGTGATGCTTTAGTTGGCAAATAGA 59.290 36.000 7.50 2.68 41.90 1.98
1500 1628 5.953183 TGTGATGCTTTAGTTGGCAAATAG 58.047 37.500 7.50 0.34 41.90 1.73
1513 1641 7.280652 ACAACTTGCTTTATTTTGTGATGCTTT 59.719 29.630 0.00 0.00 0.00 3.51
1514 1642 6.762661 ACAACTTGCTTTATTTTGTGATGCTT 59.237 30.769 0.00 0.00 0.00 3.91
1535 1665 4.552184 GCGGTCTGAACTTGAAACTACAAC 60.552 45.833 0.00 0.00 0.00 3.32
1577 1707 8.853345 CAGCAGAATTATTACATTTGTGTGTTC 58.147 33.333 0.00 0.00 33.62 3.18
1578 1708 8.359642 ACAGCAGAATTATTACATTTGTGTGTT 58.640 29.630 0.00 0.00 33.62 3.32
1579 1709 7.809331 CACAGCAGAATTATTACATTTGTGTGT 59.191 33.333 0.00 0.00 36.13 3.72
1580 1710 7.274033 CCACAGCAGAATTATTACATTTGTGTG 59.726 37.037 0.00 0.00 32.53 3.82
1581 1711 7.315142 CCACAGCAGAATTATTACATTTGTGT 58.685 34.615 0.00 0.00 32.53 3.72
1582 1712 6.254157 GCCACAGCAGAATTATTACATTTGTG 59.746 38.462 0.00 0.00 39.53 3.33
1583 1713 6.153340 AGCCACAGCAGAATTATTACATTTGT 59.847 34.615 0.00 0.00 43.56 2.83
1584 1714 6.567050 AGCCACAGCAGAATTATTACATTTG 58.433 36.000 0.00 0.00 43.56 2.32
1585 1715 6.780457 AGCCACAGCAGAATTATTACATTT 57.220 33.333 0.00 0.00 43.56 2.32
1586 1716 7.056635 AGTAGCCACAGCAGAATTATTACATT 58.943 34.615 0.00 0.00 43.56 2.71
1587 1717 6.595682 AGTAGCCACAGCAGAATTATTACAT 58.404 36.000 0.00 0.00 43.56 2.29
1588 1718 5.989477 AGTAGCCACAGCAGAATTATTACA 58.011 37.500 0.00 0.00 43.56 2.41
1589 1719 6.763610 AGAAGTAGCCACAGCAGAATTATTAC 59.236 38.462 0.00 0.00 43.56 1.89
1590 1720 6.763135 CAGAAGTAGCCACAGCAGAATTATTA 59.237 38.462 0.00 0.00 43.56 0.98
1591 1721 5.587844 CAGAAGTAGCCACAGCAGAATTATT 59.412 40.000 0.00 0.00 43.56 1.40
1592 1722 5.121811 CAGAAGTAGCCACAGCAGAATTAT 58.878 41.667 0.00 0.00 43.56 1.28
1593 1723 4.507710 CAGAAGTAGCCACAGCAGAATTA 58.492 43.478 0.00 0.00 43.56 1.40
1594 1724 3.341823 CAGAAGTAGCCACAGCAGAATT 58.658 45.455 0.00 0.00 43.56 2.17
1595 1725 2.355513 CCAGAAGTAGCCACAGCAGAAT 60.356 50.000 0.00 0.00 43.56 2.40
1596 1726 1.002430 CCAGAAGTAGCCACAGCAGAA 59.998 52.381 0.00 0.00 43.56 3.02
1597 1727 0.610174 CCAGAAGTAGCCACAGCAGA 59.390 55.000 0.00 0.00 43.56 4.26
1598 1728 1.023513 GCCAGAAGTAGCCACAGCAG 61.024 60.000 0.00 0.00 43.56 4.24
1599 1729 1.003355 GCCAGAAGTAGCCACAGCA 60.003 57.895 0.00 0.00 43.56 4.41
1600 1730 1.023513 CAGCCAGAAGTAGCCACAGC 61.024 60.000 0.00 0.00 40.32 4.40
1601 1731 0.392193 CCAGCCAGAAGTAGCCACAG 60.392 60.000 0.00 0.00 0.00 3.66
1602 1732 0.835971 TCCAGCCAGAAGTAGCCACA 60.836 55.000 0.00 0.00 0.00 4.17
1603 1733 0.107945 CTCCAGCCAGAAGTAGCCAC 60.108 60.000 0.00 0.00 0.00 5.01
1604 1734 1.903877 GCTCCAGCCAGAAGTAGCCA 61.904 60.000 0.00 0.00 34.31 4.75
1605 1735 1.153269 GCTCCAGCCAGAAGTAGCC 60.153 63.158 0.00 0.00 34.31 3.93
1606 1736 4.530581 GCTCCAGCCAGAAGTAGC 57.469 61.111 0.00 0.00 34.31 3.58
1622 1752 0.735632 CAGAGTTCACAGCTCTCGGC 60.736 60.000 0.00 0.00 40.97 5.54
1623 1753 0.600557 ACAGAGTTCACAGCTCTCGG 59.399 55.000 0.00 0.00 40.97 4.63
1624 1754 1.000827 ACACAGAGTTCACAGCTCTCG 60.001 52.381 0.00 0.00 40.97 4.04
1625 1755 2.223923 ACACACAGAGTTCACAGCTCTC 60.224 50.000 0.00 0.00 40.97 3.20
1626 1756 1.759445 ACACACAGAGTTCACAGCTCT 59.241 47.619 0.00 0.00 43.43 4.09
1627 1757 2.231215 ACACACAGAGTTCACAGCTC 57.769 50.000 0.00 0.00 0.00 4.09
1628 1758 2.283298 CAACACACAGAGTTCACAGCT 58.717 47.619 0.00 0.00 0.00 4.24
1629 1759 1.331756 CCAACACACAGAGTTCACAGC 59.668 52.381 0.00 0.00 0.00 4.40
1630 1760 2.632377 ACCAACACACAGAGTTCACAG 58.368 47.619 0.00 0.00 0.00 3.66
1631 1761 2.746904 CAACCAACACACAGAGTTCACA 59.253 45.455 0.00 0.00 0.00 3.58
1632 1762 2.477863 GCAACCAACACACAGAGTTCAC 60.478 50.000 0.00 0.00 0.00 3.18
1633 1763 1.742831 GCAACCAACACACAGAGTTCA 59.257 47.619 0.00 0.00 0.00 3.18
1634 1764 1.065551 GGCAACCAACACACAGAGTTC 59.934 52.381 0.00 0.00 0.00 3.01
1635 1765 1.102978 GGCAACCAACACACAGAGTT 58.897 50.000 0.00 0.00 0.00 3.01
1636 1766 0.255890 AGGCAACCAACACACAGAGT 59.744 50.000 0.00 0.00 37.17 3.24
1637 1767 1.392589 AAGGCAACCAACACACAGAG 58.607 50.000 0.00 0.00 37.17 3.35
1638 1768 1.476085 CAAAGGCAACCAACACACAGA 59.524 47.619 0.00 0.00 37.17 3.41
1639 1769 1.925229 CAAAGGCAACCAACACACAG 58.075 50.000 0.00 0.00 37.17 3.66
1640 1770 0.108424 GCAAAGGCAACCAACACACA 60.108 50.000 0.00 0.00 40.72 3.72
1641 1771 0.175531 AGCAAAGGCAACCAACACAC 59.824 50.000 0.00 0.00 44.61 3.82
1642 1772 0.901124 AAGCAAAGGCAACCAACACA 59.099 45.000 0.00 0.00 44.61 3.72
1643 1773 2.022764 AAAGCAAAGGCAACCAACAC 57.977 45.000 0.00 0.00 44.61 3.32
1644 1774 2.777832 AAAAGCAAAGGCAACCAACA 57.222 40.000 0.00 0.00 44.61 3.33
1645 1775 3.006247 TGAAAAAGCAAAGGCAACCAAC 58.994 40.909 0.00 0.00 44.61 3.77
1646 1776 3.340814 TGAAAAAGCAAAGGCAACCAA 57.659 38.095 0.00 0.00 44.61 3.67
1647 1777 3.340814 TTGAAAAAGCAAAGGCAACCA 57.659 38.095 0.00 0.00 44.61 3.67
1648 1778 6.370433 TTTATTGAAAAAGCAAAGGCAACC 57.630 33.333 0.00 0.00 44.61 3.77
1660 1790 5.825151 CCTGCCCCAACTTTTTATTGAAAAA 59.175 36.000 0.00 0.00 41.24 1.94
1661 1791 5.372373 CCTGCCCCAACTTTTTATTGAAAA 58.628 37.500 0.00 0.00 35.94 2.29
1662 1792 4.202409 CCCTGCCCCAACTTTTTATTGAAA 60.202 41.667 0.00 0.00 0.00 2.69
1663 1793 3.326297 CCCTGCCCCAACTTTTTATTGAA 59.674 43.478 0.00 0.00 0.00 2.69
1664 1794 2.903135 CCCTGCCCCAACTTTTTATTGA 59.097 45.455 0.00 0.00 0.00 2.57
1665 1795 2.027285 CCCCTGCCCCAACTTTTTATTG 60.027 50.000 0.00 0.00 0.00 1.90
1666 1796 2.265367 CCCCTGCCCCAACTTTTTATT 58.735 47.619 0.00 0.00 0.00 1.40
1667 1797 1.554587 CCCCCTGCCCCAACTTTTTAT 60.555 52.381 0.00 0.00 0.00 1.40
1668 1798 0.178918 CCCCCTGCCCCAACTTTTTA 60.179 55.000 0.00 0.00 0.00 1.52
1669 1799 1.461268 CCCCCTGCCCCAACTTTTT 60.461 57.895 0.00 0.00 0.00 1.94
1670 1800 2.204034 CCCCCTGCCCCAACTTTT 59.796 61.111 0.00 0.00 0.00 2.27
1686 1816 2.281970 AAACGAAAGGGGTCGCCC 60.282 61.111 1.51 6.38 45.00 6.13
1687 1817 1.167781 TTGAAACGAAAGGGGTCGCC 61.168 55.000 0.00 0.00 45.00 5.54
1688 1818 0.664224 TTTGAAACGAAAGGGGTCGC 59.336 50.000 0.00 0.00 45.00 5.19
1689 1819 3.423996 TTTTTGAAACGAAAGGGGTCG 57.576 42.857 0.00 0.00 46.54 4.79
1707 1837 8.553459 TGTACCATTTGTGTGTTCAAATTTTT 57.447 26.923 2.52 0.00 42.88 1.94
1708 1838 8.553459 TTGTACCATTTGTGTGTTCAAATTTT 57.447 26.923 2.52 0.00 42.88 1.82
1709 1839 8.553459 TTTGTACCATTTGTGTGTTCAAATTT 57.447 26.923 2.52 0.00 42.88 1.82
1710 1840 7.279758 CCTTTGTACCATTTGTGTGTTCAAATT 59.720 33.333 2.52 0.00 42.88 1.82
1711 1841 6.760770 CCTTTGTACCATTTGTGTGTTCAAAT 59.239 34.615 0.00 0.00 45.23 2.32
1712 1842 6.071334 TCCTTTGTACCATTTGTGTGTTCAAA 60.071 34.615 0.00 0.00 40.74 2.69
1713 1843 5.419155 TCCTTTGTACCATTTGTGTGTTCAA 59.581 36.000 0.00 0.00 0.00 2.69
1714 1844 4.950475 TCCTTTGTACCATTTGTGTGTTCA 59.050 37.500 0.00 0.00 0.00 3.18
1715 1845 5.508200 TCCTTTGTACCATTTGTGTGTTC 57.492 39.130 0.00 0.00 0.00 3.18
1787 1919 2.934553 GTTTCTGACCCGGCTATGTTAC 59.065 50.000 0.00 0.00 0.00 2.50
1791 1923 1.207089 TCAGTTTCTGACCCGGCTATG 59.793 52.381 0.00 0.00 35.39 2.23
1792 1924 1.568504 TCAGTTTCTGACCCGGCTAT 58.431 50.000 0.00 0.00 35.39 2.97
1798 1945 4.008074 TCATCACTTCAGTTTCTGACCC 57.992 45.455 0.00 0.00 40.46 4.46
1980 2131 2.750350 CGGTGGAGCTGGAGGTTT 59.250 61.111 0.00 0.00 0.00 3.27
1996 2147 0.035458 GGCAGATTATGACCCCTCCG 59.965 60.000 0.00 0.00 0.00 4.63
2065 2216 1.915769 AGGTGACCTCAGGGCAGAC 60.916 63.158 0.00 0.00 35.63 3.51
2088 2239 4.429212 CGGGTGGCGTCGTGATGA 62.429 66.667 0.00 0.00 0.00 2.92
2178 2329 5.105752 ACAGCATACTTCTTCGAACATCTC 58.894 41.667 0.00 0.00 0.00 2.75
2179 2330 5.078411 ACAGCATACTTCTTCGAACATCT 57.922 39.130 0.00 0.00 0.00 2.90
2211 2362 3.902881 ATCTTAGTGTGAGCCTTCCAG 57.097 47.619 0.00 0.00 0.00 3.86
2241 2392 2.128035 CAATCGCATCGGTACTCCTTC 58.872 52.381 0.00 0.00 0.00 3.46
2256 2407 5.119279 CCTTGAGAATATAGTTCCGCAATCG 59.881 44.000 0.00 0.00 0.00 3.34
2271 2422 5.690464 AGTGAGAAGCATACCTTGAGAAT 57.310 39.130 0.00 0.00 32.78 2.40
2295 2446 6.127647 GCTTGAATTCTTGGTGTGATTATCCA 60.128 38.462 7.05 0.00 0.00 3.41
2352 2518 9.699410 TTCATGTATCCTTGAACCTTGATAAAT 57.301 29.630 0.00 0.00 31.80 1.40
2363 2529 8.106462 TGACCTTAATGTTCATGTATCCTTGAA 58.894 33.333 0.00 0.00 33.68 2.69
2398 2564 4.465632 TCGGTCTACATGCACTGTTATT 57.534 40.909 7.02 0.00 39.39 1.40
2407 2573 3.436496 GTCAGTACTTCGGTCTACATGC 58.564 50.000 0.00 0.00 0.00 4.06
2408 2574 3.126514 ACGTCAGTACTTCGGTCTACATG 59.873 47.826 17.60 0.00 0.00 3.21
2429 2595 4.490890 GCGTCTGCATTTTGTAAATACGAC 59.509 41.667 8.52 4.56 42.15 4.34
2527 2696 9.705290 GTGTGAATATGGAAAGGTAAAAACAAT 57.295 29.630 0.00 0.00 0.00 2.71
2537 2712 7.447374 TGTAAACTGTGTGAATATGGAAAGG 57.553 36.000 0.00 0.00 0.00 3.11
2585 2760 4.401837 TGCCACAGATGCTAAAATATTGCA 59.598 37.500 1.84 1.84 41.13 4.08
2677 2852 7.331791 AGCTAAATATCGAGTTCCAAGAAAGT 58.668 34.615 0.00 0.00 0.00 2.66
2678 2853 7.708752 AGAGCTAAATATCGAGTTCCAAGAAAG 59.291 37.037 0.00 0.00 0.00 2.62
2714 2889 6.484643 GTGATGAAGCTATCCTTTCTGCATTA 59.515 38.462 0.00 0.00 32.78 1.90
2767 2942 4.080243 TGGTTAACCCTTGAGTTGTCTTCA 60.080 41.667 21.97 0.00 34.29 3.02
2890 3065 3.979101 TGCATGTCTGAGTTATGGTCA 57.021 42.857 0.00 0.00 0.00 4.02
3106 3281 3.393426 AGCAATGGTGAAATGGGATCT 57.607 42.857 0.00 0.00 0.00 2.75
3128 3303 6.142320 GTGAAGTTGTTTGCGAATCCTTTTAG 59.858 38.462 0.00 0.00 0.00 1.85
3244 3419 3.464907 ACCATTCATGCTCTCATCTTCG 58.535 45.455 0.00 0.00 0.00 3.79
3394 3572 0.249031 TGTGCTGCGTCTGGATATCG 60.249 55.000 0.00 0.00 0.00 2.92
3435 3613 2.020100 TAGGCCCGCATCTCCTACCT 62.020 60.000 0.00 0.00 0.00 3.08
3487 3665 5.707764 GGTCCCAGAGCTTATATCCAAATTC 59.292 44.000 0.00 0.00 0.00 2.17
3550 3728 4.589216 TTGCTCCTGATTTTTCTGTTGG 57.411 40.909 0.00 0.00 0.00 3.77
3571 3749 6.425114 GCGATGACTCATGGTAAGAATACATT 59.575 38.462 0.00 0.00 33.45 2.71
3646 3833 7.674772 ACTGAACTAGTACCAGAGTAAGGAAAT 59.325 37.037 23.90 3.31 38.04 2.17
3661 3848 6.812160 GCAGCTTAGCTAAAACTGAACTAGTA 59.188 38.462 28.03 0.00 35.94 1.82
3662 3849 5.639931 GCAGCTTAGCTAAAACTGAACTAGT 59.360 40.000 28.03 0.00 37.91 2.57
3663 3850 5.064071 GGCAGCTTAGCTAAAACTGAACTAG 59.936 44.000 28.03 8.39 36.40 2.57
3675 3862 1.381327 ACCTCGGGCAGCTTAGCTA 60.381 57.895 6.35 0.00 36.40 3.32
3702 3889 4.104738 ACATGCTATACCTTGGTAATGGCT 59.895 41.667 3.43 0.00 0.00 4.75
3710 3897 6.101650 TGTCTCATACATGCTATACCTTGG 57.898 41.667 0.00 0.00 31.43 3.61
3711 3898 5.636965 GCTGTCTCATACATGCTATACCTTG 59.363 44.000 0.00 0.00 37.50 3.61
3778 3967 7.122055 CCTGAGTTTGCCAATAAAATGGTACTA 59.878 37.037 0.00 0.00 42.75 1.82
3780 3969 6.071616 TCCTGAGTTTGCCAATAAAATGGTAC 60.072 38.462 0.00 0.00 42.75 3.34
3781 3970 6.013379 TCCTGAGTTTGCCAATAAAATGGTA 58.987 36.000 0.00 0.00 42.75 3.25
3782 3971 4.837860 TCCTGAGTTTGCCAATAAAATGGT 59.162 37.500 0.00 0.00 42.75 3.55
3784 3973 6.458210 ACTTCCTGAGTTTGCCAATAAAATG 58.542 36.000 0.00 0.00 33.92 2.32
3799 3988 0.615331 TTGCCTGGCTACTTCCTGAG 59.385 55.000 21.03 0.00 0.00 3.35
3804 3993 4.708177 TGATAAGATTGCCTGGCTACTTC 58.292 43.478 21.03 7.90 0.00 3.01
3816 4005 5.539574 TGCCCCCATTATGTTGATAAGATTG 59.460 40.000 0.00 0.00 0.00 2.67
3838 4027 2.375146 ACTTAAATCCACCCCGAATGC 58.625 47.619 0.00 0.00 0.00 3.56
3991 4180 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3992 4181 1.558294 GTATTTTGGGACGGAGGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
3993 4182 1.838077 AGTATTTTGGGACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
3994 4183 1.961133 AGTATTTTGGGACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
3995 4184 2.290705 ACAAGTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3996 4185 3.007635 GACAAGTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3997 4186 2.671396 CGACAAGTATTTTGGGACGGAG 59.329 50.000 0.00 0.00 0.00 4.63
3998 4187 2.613474 CCGACAAGTATTTTGGGACGGA 60.613 50.000 0.00 0.00 37.12 4.69
3999 4188 1.735571 CCGACAAGTATTTTGGGACGG 59.264 52.381 0.00 0.00 0.00 4.79
4000 4189 2.671396 CTCCGACAAGTATTTTGGGACG 59.329 50.000 0.00 0.00 0.00 4.79
4001 4190 3.007635 CCTCCGACAAGTATTTTGGGAC 58.992 50.000 0.00 0.00 0.00 4.46
4002 4191 2.907696 TCCTCCGACAAGTATTTTGGGA 59.092 45.455 0.00 0.00 0.00 4.37
4003 4192 3.343941 TCCTCCGACAAGTATTTTGGG 57.656 47.619 0.00 0.00 0.00 4.12
4004 4193 4.096382 CCATTCCTCCGACAAGTATTTTGG 59.904 45.833 0.00 0.00 0.00 3.28
4005 4194 4.941263 TCCATTCCTCCGACAAGTATTTTG 59.059 41.667 0.00 0.00 0.00 2.44
4006 4195 4.941873 GTCCATTCCTCCGACAAGTATTTT 59.058 41.667 0.00 0.00 0.00 1.82
4007 4196 4.514401 GTCCATTCCTCCGACAAGTATTT 58.486 43.478 0.00 0.00 0.00 1.40
4008 4197 3.430374 CGTCCATTCCTCCGACAAGTATT 60.430 47.826 0.00 0.00 0.00 1.89
4009 4198 2.100916 CGTCCATTCCTCCGACAAGTAT 59.899 50.000 0.00 0.00 0.00 2.12
4010 4199 1.475280 CGTCCATTCCTCCGACAAGTA 59.525 52.381 0.00 0.00 0.00 2.24
4011 4200 0.246635 CGTCCATTCCTCCGACAAGT 59.753 55.000 0.00 0.00 0.00 3.16
4012 4201 0.246635 ACGTCCATTCCTCCGACAAG 59.753 55.000 0.00 0.00 0.00 3.16
4013 4202 1.548081 TACGTCCATTCCTCCGACAA 58.452 50.000 0.00 0.00 0.00 3.18
4014 4203 1.679680 GATACGTCCATTCCTCCGACA 59.320 52.381 0.00 0.00 0.00 4.35
4015 4204 1.955080 AGATACGTCCATTCCTCCGAC 59.045 52.381 0.00 0.00 0.00 4.79
4016 4205 2.359981 AGATACGTCCATTCCTCCGA 57.640 50.000 0.00 0.00 0.00 4.55
4017 4206 3.409570 TCTAGATACGTCCATTCCTCCG 58.590 50.000 0.00 0.00 0.00 4.63
4018 4207 4.767928 ACATCTAGATACGTCCATTCCTCC 59.232 45.833 4.54 0.00 0.00 4.30
4019 4208 5.968528 ACATCTAGATACGTCCATTCCTC 57.031 43.478 4.54 0.00 0.00 3.71
4020 4209 8.423906 AAATACATCTAGATACGTCCATTCCT 57.576 34.615 4.54 0.00 0.00 3.36
4056 4245 9.932207 TCGTAGAAATGACTAAAAAGGAATGTA 57.068 29.630 0.00 0.00 0.00 2.29
4057 4246 8.718734 GTCGTAGAAATGACTAAAAAGGAATGT 58.281 33.333 0.00 0.00 39.69 2.71
4058 4247 8.717821 TGTCGTAGAAATGACTAAAAAGGAATG 58.282 33.333 0.00 0.00 41.46 2.67
4059 4248 8.842358 TGTCGTAGAAATGACTAAAAAGGAAT 57.158 30.769 0.00 0.00 41.46 3.01
4060 4249 8.665643 TTGTCGTAGAAATGACTAAAAAGGAA 57.334 30.769 0.00 0.00 41.46 3.36
4061 4250 7.929785 ACTTGTCGTAGAAATGACTAAAAAGGA 59.070 33.333 0.00 0.00 41.46 3.36
4062 4251 8.084590 ACTTGTCGTAGAAATGACTAAAAAGG 57.915 34.615 0.00 0.00 41.46 3.11
4067 4256 9.362539 GGAAATACTTGTCGTAGAAATGACTAA 57.637 33.333 0.00 0.00 41.46 2.24
4068 4257 7.699391 CGGAAATACTTGTCGTAGAAATGACTA 59.301 37.037 0.00 0.00 41.46 2.59
4069 4258 6.530534 CGGAAATACTTGTCGTAGAAATGACT 59.469 38.462 0.00 0.00 41.46 3.41
4070 4259 6.237755 CCGGAAATACTTGTCGTAGAAATGAC 60.238 42.308 0.00 0.00 39.69 3.06
4071 4260 5.808540 CCGGAAATACTTGTCGTAGAAATGA 59.191 40.000 0.00 0.00 39.69 2.57
4072 4261 5.808540 TCCGGAAATACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
4073 4262 5.809051 GTCCGGAAATACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
4074 4263 5.163513 GTCCGGAAATACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
4075 4264 4.672542 CGTCCGGAAATACTTGTCGTAGAA 60.673 45.833 5.23 0.00 39.69 2.10
4076 4265 3.181507 CGTCCGGAAATACTTGTCGTAGA 60.182 47.826 5.23 0.00 0.00 2.59
4077 4266 3.103738 CGTCCGGAAATACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
4078 4267 2.746904 TCGTCCGGAAATACTTGTCGTA 59.253 45.455 5.23 0.00 0.00 3.43
4079 4268 1.541147 TCGTCCGGAAATACTTGTCGT 59.459 47.619 5.23 0.00 0.00 4.34
4080 4269 2.267188 TCGTCCGGAAATACTTGTCG 57.733 50.000 5.23 1.58 0.00 4.35
4081 4270 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
4082 4271 2.354403 CCCTTCGTCCGGAAATACTTGT 60.354 50.000 5.23 0.00 33.34 3.16
4083 4272 2.093869 TCCCTTCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 33.34 3.16
4084 4273 2.167900 CTCCCTTCGTCCGGAAATACTT 59.832 50.000 5.23 0.00 33.34 2.24
4085 4274 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
4086 4275 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
4087 4276 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
4088 4277 1.856629 TACTCCCTTCGTCCGGAAAT 58.143 50.000 5.23 0.00 33.34 2.17
4089 4278 1.631405 TTACTCCCTTCGTCCGGAAA 58.369 50.000 5.23 0.00 33.34 3.13
4090 4279 1.631405 TTTACTCCCTTCGTCCGGAA 58.369 50.000 5.23 0.00 0.00 4.30
4091 4280 1.631405 TTTTACTCCCTTCGTCCGGA 58.369 50.000 0.00 0.00 0.00 5.14
4092 4281 2.460757 TTTTTACTCCCTTCGTCCGG 57.539 50.000 0.00 0.00 0.00 5.14
4245 6523 3.802948 TGGAAGAAAGGACGCTAGATC 57.197 47.619 0.00 0.00 0.00 2.75
4269 6547 0.830648 AGCCTGTTATTAGCGCCTGA 59.169 50.000 2.29 0.00 0.00 3.86
4284 6562 4.409247 ACGAAGTAATAGGAATTGGAGCCT 59.591 41.667 0.00 0.00 41.94 4.58
4285 6563 4.704965 ACGAAGTAATAGGAATTGGAGCC 58.295 43.478 0.00 0.00 41.94 4.70
4362 6640 9.454859 CTTCTTTCTACTCCCATGTAAAGAAAT 57.545 33.333 0.00 0.00 33.04 2.17
4363 6641 7.883311 CCTTCTTTCTACTCCCATGTAAAGAAA 59.117 37.037 0.00 0.00 33.04 2.52
4364 6642 7.394816 CCTTCTTTCTACTCCCATGTAAAGAA 58.605 38.462 0.00 0.00 32.73 2.52
4365 6643 6.070194 CCCTTCTTTCTACTCCCATGTAAAGA 60.070 42.308 0.00 0.00 0.00 2.52
4366 6644 6.116126 CCCTTCTTTCTACTCCCATGTAAAG 58.884 44.000 0.00 0.00 0.00 1.85
4367 6645 5.572885 GCCCTTCTTTCTACTCCCATGTAAA 60.573 44.000 0.00 0.00 0.00 2.01
4368 6646 4.080526 GCCCTTCTTTCTACTCCCATGTAA 60.081 45.833 0.00 0.00 0.00 2.41
4369 6647 3.454812 GCCCTTCTTTCTACTCCCATGTA 59.545 47.826 0.00 0.00 0.00 2.29
4370 6648 2.239907 GCCCTTCTTTCTACTCCCATGT 59.760 50.000 0.00 0.00 0.00 3.21
4371 6649 2.422093 GGCCCTTCTTTCTACTCCCATG 60.422 54.545 0.00 0.00 0.00 3.66
4372 6650 1.847088 GGCCCTTCTTTCTACTCCCAT 59.153 52.381 0.00 0.00 0.00 4.00
4373 6651 1.286248 GGCCCTTCTTTCTACTCCCA 58.714 55.000 0.00 0.00 0.00 4.37
4409 6687 2.671854 GCGCTAGGCTCAGTCTTTC 58.328 57.895 0.00 0.00 39.11 2.62
4454 6732 4.980573 TGTTTATTCCCAGCACTAAGTGT 58.019 39.130 0.00 0.00 35.75 3.55
4455 6733 5.551760 CTGTTTATTCCCAGCACTAAGTG 57.448 43.478 0.00 0.00 36.51 3.16
4464 6742 4.636206 GTCAGTTAGGCTGTTTATTCCCAG 59.364 45.833 0.00 0.00 45.23 4.45
4465 6743 4.042311 TGTCAGTTAGGCTGTTTATTCCCA 59.958 41.667 0.00 0.00 45.23 4.37
4466 6744 4.585879 TGTCAGTTAGGCTGTTTATTCCC 58.414 43.478 0.00 0.00 45.23 3.97
4467 6745 6.599638 AGATTGTCAGTTAGGCTGTTTATTCC 59.400 38.462 0.00 0.00 45.23 3.01
4468 6746 7.617041 AGATTGTCAGTTAGGCTGTTTATTC 57.383 36.000 0.00 0.00 45.23 1.75
4469 6747 7.553044 GGTAGATTGTCAGTTAGGCTGTTTATT 59.447 37.037 0.00 0.00 45.23 1.40
4470 6748 7.048512 GGTAGATTGTCAGTTAGGCTGTTTAT 58.951 38.462 0.00 0.00 45.23 1.40
4523 6801 0.691078 TTAAGCCATCGGGAGGAGCT 60.691 55.000 0.00 0.00 35.59 4.09
4530 6808 1.344763 CTAGGGACTTAAGCCATCGGG 59.655 57.143 15.09 0.00 41.75 5.14
4540 6824 3.266772 TGGGTAGTTCGTCTAGGGACTTA 59.733 47.826 0.00 0.00 41.75 2.24
4562 6846 5.012251 GGAGAGAGAGGGAGTTAAGTTTTGT 59.988 44.000 0.00 0.00 0.00 2.83
4563 6847 5.247337 AGGAGAGAGAGGGAGTTAAGTTTTG 59.753 44.000 0.00 0.00 0.00 2.44
4584 6869 5.754782 TGGCAGATGAAAGCTAATTAAGGA 58.245 37.500 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.