Multiple sequence alignment - TraesCS4B01G293700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G293700 chr4B 100.000 3156 0 0 1 3156 579404559 579407714 0.000000e+00 5829.0
1 TraesCS4B01G293700 chr4D 93.280 1384 53 14 816 2171 463463563 463464934 0.000000e+00 2004.0
2 TraesCS4B01G293700 chr4D 92.308 273 21 0 2884 3156 463676500 463676772 3.820000e-104 388.0
3 TraesCS4B01G293700 chr4D 96.392 194 7 0 2963 3156 463465673 463465866 1.410000e-83 320.0
4 TraesCS4B01G293700 chr4D 86.154 195 18 5 2164 2358 463464969 463465154 5.340000e-48 202.0
5 TraesCS4B01G293700 chr4D 89.157 83 8 1 9 90 463462547 463462629 5.570000e-18 102.0
6 TraesCS4B01G293700 chr4A 92.602 784 41 9 839 1611 6019823 6019046 0.000000e+00 1110.0
7 TraesCS4B01G293700 chr4A 84.632 950 74 36 1721 2627 6019021 6018101 0.000000e+00 880.0
8 TraesCS4B01G293700 chr4A 96.346 301 11 0 2856 3156 6018029 6017729 2.190000e-136 496.0
9 TraesCS4B01G293700 chr4A 93.956 182 9 2 2679 2859 427489171 427488991 1.120000e-69 274.0
10 TraesCS4B01G293700 chr4A 89.202 213 16 7 2689 2898 618949227 618949019 3.120000e-65 259.0
11 TraesCS4B01G293700 chr4A 92.941 85 6 0 339 423 639988787 639988871 1.190000e-24 124.0
12 TraesCS4B01G293700 chr6D 88.483 356 36 4 421 774 41159213 41159565 2.910000e-115 425.0
13 TraesCS4B01G293700 chr7D 88.068 352 38 4 424 775 53333423 53333770 6.300000e-112 414.0
14 TraesCS4B01G293700 chr3D 87.819 353 40 3 424 776 505421086 505420737 8.150000e-111 411.0
15 TraesCS4B01G293700 chr5A 88.116 345 38 3 427 771 701968843 701968502 1.050000e-109 407.0
16 TraesCS4B01G293700 chr5A 86.782 348 43 3 426 773 704609431 704609775 4.940000e-103 385.0
17 TraesCS4B01G293700 chr5A 86.040 351 43 6 424 773 297712991 297712646 3.840000e-99 372.0
18 TraesCS4B01G293700 chr5A 96.000 175 6 1 2688 2862 475331888 475332061 1.850000e-72 283.0
19 TraesCS4B01G293700 chr2A 86.932 352 41 4 424 775 615744263 615743917 1.060000e-104 390.0
20 TraesCS4B01G293700 chr2A 97.076 171 5 0 2692 2862 326163889 326164059 3.980000e-74 289.0
21 TraesCS4B01G293700 chr2A 93.023 86 6 0 338 423 720058439 720058354 3.300000e-25 126.0
22 TraesCS4B01G293700 chr2A 92.941 85 6 0 339 423 123533267 123533351 1.190000e-24 124.0
23 TraesCS4B01G293700 chr2A 92.771 83 6 0 339 421 419654481 419654399 1.540000e-23 121.0
24 TraesCS4B01G293700 chr2A 91.765 85 7 0 339 423 40936960 40937044 5.530000e-23 119.0
25 TraesCS4B01G293700 chr1D 86.286 350 45 3 424 773 418300554 418300900 8.260000e-101 377.0
26 TraesCS4B01G293700 chr1D 84.330 351 49 4 424 774 487716128 487716472 3.900000e-89 339.0
27 TraesCS4B01G293700 chr1D 90.000 90 9 0 334 423 190767381 190767292 1.990000e-22 117.0
28 TraesCS4B01G293700 chr7A 97.619 168 4 0 2695 2862 486649339 486649172 3.980000e-74 289.0
29 TraesCS4B01G293700 chr7A 97.041 169 5 0 2691 2859 556571438 556571270 5.150000e-73 285.0
30 TraesCS4B01G293700 chr7A 95.429 175 8 0 2691 2865 131816140 131815966 2.400000e-71 279.0
31 TraesCS4B01G293700 chr3B 97.076 171 4 1 2691 2860 703118709 703118539 1.430000e-73 287.0
32 TraesCS4B01G293700 chr1A 97.041 169 4 1 2694 2862 591948725 591948892 1.850000e-72 283.0
33 TraesCS4B01G293700 chr1A 91.765 85 7 0 339 423 524707226 524707310 5.530000e-23 119.0
34 TraesCS4B01G293700 chr2D 93.023 86 6 0 338 423 417633604 417633689 3.300000e-25 126.0
35 TraesCS4B01G293700 chr5B 91.765 85 7 0 339 423 684097227 684097311 5.530000e-23 119.0
36 TraesCS4B01G293700 chr1B 100.000 28 0 0 770 797 477412956 477412929 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G293700 chr4B 579404559 579407714 3155 False 5829.000000 5829 100.000000 1 3156 1 chr4B.!!$F1 3155
1 TraesCS4B01G293700 chr4D 463462547 463465866 3319 False 657.000000 2004 91.245750 9 3156 4 chr4D.!!$F2 3147
2 TraesCS4B01G293700 chr4A 6017729 6019823 2094 True 828.666667 1110 91.193333 839 3156 3 chr4A.!!$R3 2317

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 93 0.036952 AGCGACCACCTCACTCATTG 60.037 55.0 0.00 0.00 0.0 2.82 F
809 1237 0.249238 GAGTAGACGGGAGCTGCATG 60.249 60.0 7.79 0.74 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1917 0.898789 GGAACCAGGTGAGGACGAGA 60.899 60.0 0.00 0.00 0.00 4.04 R
2488 3020 0.036671 TGCTGACTGTGCAGATCCAG 60.037 55.0 6.17 10.31 38.14 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.087501 GTCATCGGGAAGCTCAAACC 58.912 55.000 0.00 0.00 0.00 3.27
80 82 1.873698 TCAAACCTGTAAGCGACCAC 58.126 50.000 0.00 0.00 0.00 4.16
90 92 0.687354 AAGCGACCACCTCACTCATT 59.313 50.000 0.00 0.00 0.00 2.57
91 93 0.036952 AGCGACCACCTCACTCATTG 60.037 55.000 0.00 0.00 0.00 2.82
102 148 1.003580 TCACTCATTGCTCCCAAGGAC 59.996 52.381 0.00 0.00 36.89 3.85
109 155 1.675641 GCTCCCAAGGACGTGCAAT 60.676 57.895 10.52 0.00 0.00 3.56
122 168 3.331002 TGCAATTACGGAGGTGCAA 57.669 47.368 4.92 0.00 43.65 4.08
127 173 3.500982 CAATTACGGAGGTGCAATGTTG 58.499 45.455 0.00 0.00 0.00 3.33
149 195 4.035684 GCGTCCTTGTTTGAGTTTTTCTC 58.964 43.478 0.00 0.00 43.03 2.87
151 197 5.676331 GCGTCCTTGTTTGAGTTTTTCTCTT 60.676 40.000 0.00 0.00 43.13 2.85
152 198 6.322491 CGTCCTTGTTTGAGTTTTTCTCTTT 58.678 36.000 0.00 0.00 43.13 2.52
153 199 6.251376 CGTCCTTGTTTGAGTTTTTCTCTTTG 59.749 38.462 0.00 0.00 43.13 2.77
154 200 6.035005 GTCCTTGTTTGAGTTTTTCTCTTTGC 59.965 38.462 0.00 0.00 43.13 3.68
155 201 5.004726 CCTTGTTTGAGTTTTTCTCTTTGCG 59.995 40.000 0.00 0.00 43.13 4.85
156 202 4.420168 TGTTTGAGTTTTTCTCTTTGCGG 58.580 39.130 0.00 0.00 43.13 5.69
157 203 4.082463 TGTTTGAGTTTTTCTCTTTGCGGT 60.082 37.500 0.00 0.00 43.13 5.68
158 204 3.691049 TGAGTTTTTCTCTTTGCGGTG 57.309 42.857 0.00 0.00 43.13 4.94
159 205 3.013921 TGAGTTTTTCTCTTTGCGGTGT 58.986 40.909 0.00 0.00 43.13 4.16
160 206 3.442273 TGAGTTTTTCTCTTTGCGGTGTT 59.558 39.130 0.00 0.00 43.13 3.32
161 207 4.028852 AGTTTTTCTCTTTGCGGTGTTC 57.971 40.909 0.00 0.00 0.00 3.18
162 208 3.113322 GTTTTTCTCTTTGCGGTGTTCC 58.887 45.455 0.00 0.00 0.00 3.62
163 209 2.045561 TTTCTCTTTGCGGTGTTCCA 57.954 45.000 0.00 0.00 0.00 3.53
164 210 2.045561 TTCTCTTTGCGGTGTTCCAA 57.954 45.000 0.00 0.00 0.00 3.53
168 214 1.673920 TCTTTGCGGTGTTCCAAGTTC 59.326 47.619 0.00 0.00 0.00 3.01
174 220 2.021457 CGGTGTTCCAAGTTCCAAGTT 58.979 47.619 0.00 0.00 0.00 2.66
180 226 4.952957 TGTTCCAAGTTCCAAGTTCATTGA 59.047 37.500 0.00 0.00 41.83 2.57
185 231 7.563906 TCCAAGTTCCAAGTTCATTGATTTTT 58.436 30.769 0.00 0.00 41.83 1.94
237 286 9.840427 AAAATTGTTAATCCGATACAACTTCAG 57.160 29.630 0.00 0.00 34.90 3.02
238 287 8.561738 AATTGTTAATCCGATACAACTTCAGT 57.438 30.769 0.00 0.00 34.90 3.41
239 288 7.972832 TTGTTAATCCGATACAACTTCAGTT 57.027 32.000 7.11 0.00 39.12 3.16
240 289 9.661563 ATTGTTAATCCGATACAACTTCAGTTA 57.338 29.630 0.00 0.00 36.32 2.24
241 290 9.661563 TTGTTAATCCGATACAACTTCAGTTAT 57.338 29.630 0.00 0.00 36.32 1.89
242 291 9.661563 TGTTAATCCGATACAACTTCAGTTATT 57.338 29.630 0.00 0.00 36.32 1.40
247 296 9.886132 ATCCGATACAACTTCAGTTATTTTACT 57.114 29.630 0.00 0.00 36.32 2.24
276 325 8.993424 ACTAGTTTATGTAGTCCAATGATTCCT 58.007 33.333 0.00 0.00 0.00 3.36
277 326 9.482627 CTAGTTTATGTAGTCCAATGATTCCTC 57.517 37.037 0.00 0.00 0.00 3.71
278 327 7.861629 AGTTTATGTAGTCCAATGATTCCTCA 58.138 34.615 0.00 0.00 35.41 3.86
279 328 8.328758 AGTTTATGTAGTCCAATGATTCCTCAA 58.671 33.333 0.00 0.00 34.37 3.02
280 329 8.398665 GTTTATGTAGTCCAATGATTCCTCAAC 58.601 37.037 0.00 0.00 34.37 3.18
281 330 5.762179 TGTAGTCCAATGATTCCTCAACT 57.238 39.130 0.00 0.00 34.37 3.16
282 331 6.126863 TGTAGTCCAATGATTCCTCAACTT 57.873 37.500 0.00 0.00 34.37 2.66
283 332 6.173339 TGTAGTCCAATGATTCCTCAACTTC 58.827 40.000 0.00 0.00 34.37 3.01
284 333 4.256920 AGTCCAATGATTCCTCAACTTCG 58.743 43.478 0.00 0.00 34.37 3.79
285 334 4.003648 GTCCAATGATTCCTCAACTTCGT 58.996 43.478 0.00 0.00 34.37 3.85
287 336 4.020218 TCCAATGATTCCTCAACTTCGTCT 60.020 41.667 0.00 0.00 34.37 4.18
288 337 4.093998 CCAATGATTCCTCAACTTCGTCTG 59.906 45.833 0.00 0.00 34.37 3.51
289 338 4.543590 ATGATTCCTCAACTTCGTCTGT 57.456 40.909 0.00 0.00 34.37 3.41
290 339 4.336889 TGATTCCTCAACTTCGTCTGTT 57.663 40.909 0.00 0.00 0.00 3.16
291 340 4.307432 TGATTCCTCAACTTCGTCTGTTC 58.693 43.478 0.00 0.00 0.00 3.18
292 341 4.039245 TGATTCCTCAACTTCGTCTGTTCT 59.961 41.667 0.00 0.00 0.00 3.01
293 342 3.644884 TCCTCAACTTCGTCTGTTCTC 57.355 47.619 0.00 0.00 0.00 2.87
294 343 3.223435 TCCTCAACTTCGTCTGTTCTCT 58.777 45.455 0.00 0.00 0.00 3.10
295 344 4.395625 TCCTCAACTTCGTCTGTTCTCTA 58.604 43.478 0.00 0.00 0.00 2.43
296 345 4.215827 TCCTCAACTTCGTCTGTTCTCTAC 59.784 45.833 0.00 0.00 0.00 2.59
297 346 4.216687 CCTCAACTTCGTCTGTTCTCTACT 59.783 45.833 0.00 0.00 0.00 2.57
298 347 5.359716 TCAACTTCGTCTGTTCTCTACTC 57.640 43.478 0.00 0.00 0.00 2.59
299 348 4.215827 TCAACTTCGTCTGTTCTCTACTCC 59.784 45.833 0.00 0.00 0.00 3.85
300 349 2.743126 ACTTCGTCTGTTCTCTACTCCG 59.257 50.000 0.00 0.00 0.00 4.63
301 350 2.469274 TCGTCTGTTCTCTACTCCGT 57.531 50.000 0.00 0.00 0.00 4.69
302 351 2.344950 TCGTCTGTTCTCTACTCCGTC 58.655 52.381 0.00 0.00 0.00 4.79
303 352 2.028294 TCGTCTGTTCTCTACTCCGTCT 60.028 50.000 0.00 0.00 0.00 4.18
304 353 2.743126 CGTCTGTTCTCTACTCCGTCTT 59.257 50.000 0.00 0.00 0.00 3.01
305 354 3.188873 CGTCTGTTCTCTACTCCGTCTTT 59.811 47.826 0.00 0.00 0.00 2.52
306 355 4.320348 CGTCTGTTCTCTACTCCGTCTTTT 60.320 45.833 0.00 0.00 0.00 2.27
307 356 4.918583 GTCTGTTCTCTACTCCGTCTTTTG 59.081 45.833 0.00 0.00 0.00 2.44
308 357 3.650139 TGTTCTCTACTCCGTCTTTTGC 58.350 45.455 0.00 0.00 0.00 3.68
309 358 3.321111 TGTTCTCTACTCCGTCTTTTGCT 59.679 43.478 0.00 0.00 0.00 3.91
310 359 3.851976 TCTCTACTCCGTCTTTTGCTC 57.148 47.619 0.00 0.00 0.00 4.26
311 360 3.422796 TCTCTACTCCGTCTTTTGCTCT 58.577 45.455 0.00 0.00 0.00 4.09
312 361 4.586884 TCTCTACTCCGTCTTTTGCTCTA 58.413 43.478 0.00 0.00 0.00 2.43
313 362 5.008331 TCTCTACTCCGTCTTTTGCTCTAA 58.992 41.667 0.00 0.00 0.00 2.10
314 363 5.475909 TCTCTACTCCGTCTTTTGCTCTAAA 59.524 40.000 0.00 0.00 0.00 1.85
315 364 6.153000 TCTCTACTCCGTCTTTTGCTCTAAAT 59.847 38.462 0.00 0.00 0.00 1.40
316 365 7.338703 TCTCTACTCCGTCTTTTGCTCTAAATA 59.661 37.037 0.00 0.00 0.00 1.40
317 366 7.833786 TCTACTCCGTCTTTTGCTCTAAATAA 58.166 34.615 0.00 0.00 0.00 1.40
318 367 8.308931 TCTACTCCGTCTTTTGCTCTAAATAAA 58.691 33.333 0.00 0.00 0.00 1.40
319 368 7.739498 ACTCCGTCTTTTGCTCTAAATAAAA 57.261 32.000 0.00 0.00 0.00 1.52
320 369 8.161699 ACTCCGTCTTTTGCTCTAAATAAAAA 57.838 30.769 0.00 0.00 0.00 1.94
321 370 8.793592 ACTCCGTCTTTTGCTCTAAATAAAAAT 58.206 29.630 0.00 0.00 0.00 1.82
322 371 8.964420 TCCGTCTTTTGCTCTAAATAAAAATG 57.036 30.769 0.00 0.00 0.00 2.32
323 372 8.788806 TCCGTCTTTTGCTCTAAATAAAAATGA 58.211 29.630 0.00 0.00 0.00 2.57
324 373 9.573133 CCGTCTTTTGCTCTAAATAAAAATGAT 57.427 29.630 0.00 0.00 0.00 2.45
327 376 9.926158 TCTTTTGCTCTAAATAAAAATGATGCA 57.074 25.926 0.00 0.00 0.00 3.96
330 379 9.872721 TTTGCTCTAAATAAAAATGATGCATGA 57.127 25.926 2.46 0.00 0.00 3.07
341 390 7.886629 AAAATGATGCATGATACCTGTTACT 57.113 32.000 2.46 0.00 0.00 2.24
342 391 7.886629 AAATGATGCATGATACCTGTTACTT 57.113 32.000 2.46 0.00 0.00 2.24
343 392 7.502120 AATGATGCATGATACCTGTTACTTC 57.498 36.000 2.46 0.00 0.00 3.01
344 393 5.988287 TGATGCATGATACCTGTTACTTCA 58.012 37.500 2.46 0.00 0.00 3.02
345 394 6.594744 TGATGCATGATACCTGTTACTTCAT 58.405 36.000 2.46 0.00 0.00 2.57
346 395 6.707608 TGATGCATGATACCTGTTACTTCATC 59.292 38.462 2.46 0.00 0.00 2.92
347 396 5.368145 TGCATGATACCTGTTACTTCATCC 58.632 41.667 0.00 0.00 0.00 3.51
348 397 4.449068 GCATGATACCTGTTACTTCATCCG 59.551 45.833 0.00 0.00 0.00 4.18
349 398 5.601662 CATGATACCTGTTACTTCATCCGT 58.398 41.667 0.00 0.00 0.00 4.69
350 399 5.670792 TGATACCTGTTACTTCATCCGTT 57.329 39.130 0.00 0.00 0.00 4.44
351 400 6.045072 TGATACCTGTTACTTCATCCGTTT 57.955 37.500 0.00 0.00 0.00 3.60
352 401 6.469410 TGATACCTGTTACTTCATCCGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
353 402 7.613585 TGATACCTGTTACTTCATCCGTTTTA 58.386 34.615 0.00 0.00 0.00 1.52
354 403 8.095792 TGATACCTGTTACTTCATCCGTTTTAA 58.904 33.333 0.00 0.00 0.00 1.52
355 404 8.851541 ATACCTGTTACTTCATCCGTTTTAAA 57.148 30.769 0.00 0.00 0.00 1.52
356 405 7.571080 ACCTGTTACTTCATCCGTTTTAAAA 57.429 32.000 0.00 0.00 0.00 1.52
357 406 8.173542 ACCTGTTACTTCATCCGTTTTAAAAT 57.826 30.769 3.52 0.00 0.00 1.82
358 407 9.287373 ACCTGTTACTTCATCCGTTTTAAAATA 57.713 29.630 3.52 0.00 0.00 1.40
359 408 9.769093 CCTGTTACTTCATCCGTTTTAAAATAG 57.231 33.333 3.52 1.99 0.00 1.73
410 459 9.716531 AGTACAAAGTTAGTATAAAGTTGGGTC 57.283 33.333 0.00 0.00 0.00 4.46
414 463 9.449719 CAAAGTTAGTATAAAGTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
421 470 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
422 471 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
424 473 6.780457 AAGTTGGGTCATCTATTTTGGATG 57.220 37.500 0.00 0.00 41.14 3.51
438 487 9.487790 TCTATTTTGGATGAAAATGGACAAAAC 57.512 29.630 0.00 0.00 43.09 2.43
440 489 7.551035 TTTTGGATGAAAATGGACAAAACTG 57.449 32.000 0.00 0.00 34.18 3.16
442 491 4.653341 TGGATGAAAATGGACAAAACTGGT 59.347 37.500 0.00 0.00 0.00 4.00
443 492 5.221422 TGGATGAAAATGGACAAAACTGGTC 60.221 40.000 0.00 0.00 34.52 4.02
455 504 7.078011 GACAAAACTGGTCCTTATCTGAATC 57.922 40.000 0.00 0.00 0.00 2.52
456 505 6.784031 ACAAAACTGGTCCTTATCTGAATCT 58.216 36.000 0.00 0.00 0.00 2.40
457 506 7.234355 ACAAAACTGGTCCTTATCTGAATCTT 58.766 34.615 0.00 0.00 0.00 2.40
458 507 7.391833 ACAAAACTGGTCCTTATCTGAATCTTC 59.608 37.037 0.00 0.00 0.00 2.87
459 508 6.627087 AACTGGTCCTTATCTGAATCTTCA 57.373 37.500 0.00 0.00 35.57 3.02
461 510 6.410540 ACTGGTCCTTATCTGAATCTTCAAC 58.589 40.000 0.00 0.00 36.64 3.18
462 511 6.013379 ACTGGTCCTTATCTGAATCTTCAACA 60.013 38.462 0.00 0.00 36.64 3.33
463 512 6.173339 TGGTCCTTATCTGAATCTTCAACAC 58.827 40.000 0.00 0.00 36.64 3.32
464 513 6.173339 GGTCCTTATCTGAATCTTCAACACA 58.827 40.000 0.00 0.00 36.64 3.72
465 514 6.655003 GGTCCTTATCTGAATCTTCAACACAA 59.345 38.462 0.00 0.00 36.64 3.33
466 515 7.174946 GGTCCTTATCTGAATCTTCAACACAAA 59.825 37.037 0.00 0.00 36.64 2.83
467 516 8.567948 GTCCTTATCTGAATCTTCAACACAAAA 58.432 33.333 0.00 0.00 36.64 2.44
470 519 9.350357 CTTATCTGAATCTTCAACACAAAATGG 57.650 33.333 0.00 0.00 36.64 3.16
471 520 5.531634 TCTGAATCTTCAACACAAAATGGC 58.468 37.500 0.00 0.00 36.64 4.40
472 521 4.630111 TGAATCTTCAACACAAAATGGCC 58.370 39.130 0.00 0.00 33.55 5.36
473 522 3.683365 ATCTTCAACACAAAATGGCCC 57.317 42.857 0.00 0.00 0.00 5.80
474 523 1.691434 TCTTCAACACAAAATGGCCCC 59.309 47.619 0.00 0.00 0.00 5.80
477 526 2.053244 TCAACACAAAATGGCCCCAAT 58.947 42.857 0.00 0.00 0.00 3.16
478 527 2.038295 TCAACACAAAATGGCCCCAATC 59.962 45.455 0.00 0.00 0.00 2.67
479 528 2.028561 ACACAAAATGGCCCCAATCT 57.971 45.000 0.00 0.00 0.00 2.40
480 529 1.624813 ACACAAAATGGCCCCAATCTG 59.375 47.619 0.00 0.00 0.00 2.90
481 530 1.065998 CACAAAATGGCCCCAATCTGG 60.066 52.381 0.00 0.00 37.25 3.86
483 532 1.907936 CAAAATGGCCCCAATCTGGAA 59.092 47.619 0.00 0.00 40.96 3.53
484 533 2.305343 CAAAATGGCCCCAATCTGGAAA 59.695 45.455 0.00 0.00 40.96 3.13
485 534 2.340721 AATGGCCCCAATCTGGAAAA 57.659 45.000 0.00 0.00 40.96 2.29
505 554 1.937191 AAAATCACGAAATGGCCCCT 58.063 45.000 0.00 0.00 0.00 4.79
506 555 1.937191 AAATCACGAAATGGCCCCTT 58.063 45.000 0.00 0.00 0.00 3.95
507 556 1.937191 AATCACGAAATGGCCCCTTT 58.063 45.000 0.00 0.00 0.00 3.11
508 557 1.937191 ATCACGAAATGGCCCCTTTT 58.063 45.000 0.00 0.00 0.00 2.27
509 558 0.965439 TCACGAAATGGCCCCTTTTG 59.035 50.000 0.00 6.94 0.00 2.44
510 559 0.670239 CACGAAATGGCCCCTTTTGC 60.670 55.000 0.00 0.00 0.00 3.68
511 560 1.118356 ACGAAATGGCCCCTTTTGCA 61.118 50.000 0.00 0.00 0.00 4.08
512 561 0.249955 CGAAATGGCCCCTTTTGCAT 59.750 50.000 0.00 0.00 0.00 3.96
514 563 1.278699 GAAATGGCCCCTTTTGCATGA 59.721 47.619 0.00 0.00 0.00 3.07
515 564 0.614812 AATGGCCCCTTTTGCATGAC 59.385 50.000 0.00 0.00 0.00 3.06
520 569 2.179018 CCTTTTGCATGACGCCCG 59.821 61.111 0.00 0.00 41.33 6.13
523 572 1.298157 CTTTTGCATGACGCCCGAGA 61.298 55.000 0.00 0.00 41.33 4.04
524 573 1.573829 TTTTGCATGACGCCCGAGAC 61.574 55.000 0.00 0.00 41.33 3.36
525 574 2.449031 TTTGCATGACGCCCGAGACT 62.449 55.000 0.00 0.00 41.33 3.24
526 575 1.600511 TTGCATGACGCCCGAGACTA 61.601 55.000 0.00 0.00 41.33 2.59
527 576 1.299468 GCATGACGCCCGAGACTAG 60.299 63.158 0.00 0.00 32.94 2.57
528 577 1.360551 CATGACGCCCGAGACTAGG 59.639 63.158 0.00 0.00 0.00 3.02
538 587 2.765807 AGACTAGGGCGCCATGCT 60.766 61.111 30.85 18.97 45.43 3.79
539 588 1.457643 AGACTAGGGCGCCATGCTA 60.458 57.895 30.85 19.08 45.43 3.49
542 591 0.833834 ACTAGGGCGCCATGCTAGAT 60.834 55.000 32.29 19.45 45.43 1.98
543 592 1.186200 CTAGGGCGCCATGCTAGATA 58.814 55.000 30.85 2.36 45.43 1.98
544 593 1.135915 CTAGGGCGCCATGCTAGATAG 59.864 57.143 30.85 9.89 45.43 2.08
557 606 3.214697 CTAGATAGCATGACGCCTCAG 57.785 52.381 0.00 0.00 44.04 3.35
558 607 0.678395 AGATAGCATGACGCCTCAGG 59.322 55.000 0.00 0.00 44.04 3.86
568 617 4.228567 GCCTCAGGCTAGGGCGTC 62.229 72.222 9.09 0.00 46.69 5.19
569 618 2.759973 CCTCAGGCTAGGGCGTCA 60.760 66.667 0.00 0.00 39.81 4.35
570 619 2.136878 CCTCAGGCTAGGGCGTCAT 61.137 63.158 0.00 0.00 39.81 3.06
571 620 1.068753 CTCAGGCTAGGGCGTCATG 59.931 63.158 0.00 0.00 39.81 3.07
573 622 2.765807 AGGCTAGGGCGTCATGCT 60.766 61.111 0.00 0.00 45.43 3.79
574 623 1.457643 AGGCTAGGGCGTCATGCTA 60.458 57.895 0.00 0.00 45.43 3.49
575 624 0.833834 AGGCTAGGGCGTCATGCTAT 60.834 55.000 0.00 0.00 45.43 2.97
576 625 0.895530 GGCTAGGGCGTCATGCTATA 59.104 55.000 0.00 0.00 45.43 1.31
577 626 1.482593 GGCTAGGGCGTCATGCTATAT 59.517 52.381 0.00 0.00 45.43 0.86
579 628 2.739932 GCTAGGGCGTCATGCTATATGG 60.740 54.545 0.00 0.00 45.43 2.74
581 630 0.321564 GGGCGTCATGCTATATGGCA 60.322 55.000 16.69 16.69 46.63 4.92
614 1042 1.667830 CGGGGCGCCATACTACATG 60.668 63.158 30.85 1.89 0.00 3.21
620 1048 2.544277 GGCGCCATACTACATGTCGTTA 60.544 50.000 24.80 0.00 0.00 3.18
621 1049 3.314553 GCGCCATACTACATGTCGTTAT 58.685 45.455 8.46 0.00 0.00 1.89
622 1050 3.364023 GCGCCATACTACATGTCGTTATC 59.636 47.826 8.46 0.00 0.00 1.75
623 1051 4.542735 CGCCATACTACATGTCGTTATCA 58.457 43.478 8.46 0.00 0.00 2.15
626 1054 5.348724 GCCATACTACATGTCGTTATCATGG 59.651 44.000 18.88 18.88 44.57 3.66
632 1060 0.908910 TGTCGTTATCATGGTGCCCT 59.091 50.000 0.00 0.00 0.00 5.19
633 1061 1.280710 TGTCGTTATCATGGTGCCCTT 59.719 47.619 0.00 0.00 0.00 3.95
634 1062 1.670811 GTCGTTATCATGGTGCCCTTG 59.329 52.381 0.00 1.99 0.00 3.61
636 1064 0.746659 GTTATCATGGTGCCCTTGCC 59.253 55.000 0.00 0.00 36.33 4.52
637 1065 0.396974 TTATCATGGTGCCCTTGCCC 60.397 55.000 0.00 0.00 36.33 5.36
638 1066 2.623094 TATCATGGTGCCCTTGCCCG 62.623 60.000 0.00 0.00 36.33 6.13
653 1081 4.899239 CCGGGGCGTCATGCTCTC 62.899 72.222 0.00 0.00 46.29 3.20
654 1082 3.842923 CGGGGCGTCATGCTCTCT 61.843 66.667 0.00 0.00 46.29 3.10
655 1083 2.202987 GGGGCGTCATGCTCTCTG 60.203 66.667 0.00 0.00 46.29 3.35
656 1084 2.202987 GGGCGTCATGCTCTCTGG 60.203 66.667 0.00 0.00 42.52 3.86
657 1085 2.894387 GGCGTCATGCTCTCTGGC 60.894 66.667 0.00 0.00 45.43 4.85
658 1086 2.125391 GCGTCATGCTCTCTGGCA 60.125 61.111 0.00 0.00 46.63 4.92
686 1114 2.185867 GCCCCGAGCGTCATGTAA 59.814 61.111 0.00 0.00 0.00 2.41
689 1117 1.006832 CCCCGAGCGTCATGTAAAAG 58.993 55.000 0.00 0.00 0.00 2.27
690 1118 1.404986 CCCCGAGCGTCATGTAAAAGA 60.405 52.381 0.00 0.00 0.00 2.52
691 1119 1.927174 CCCGAGCGTCATGTAAAAGAG 59.073 52.381 0.00 0.00 0.00 2.85
692 1120 1.927174 CCGAGCGTCATGTAAAAGAGG 59.073 52.381 0.00 0.00 0.00 3.69
693 1121 1.927174 CGAGCGTCATGTAAAAGAGGG 59.073 52.381 0.00 0.00 0.00 4.30
694 1122 1.666189 GAGCGTCATGTAAAAGAGGGC 59.334 52.381 0.00 0.00 0.00 5.19
696 1124 1.948611 GCGTCATGTAAAAGAGGGCCA 60.949 52.381 6.18 0.00 0.00 5.36
699 1127 3.443681 CGTCATGTAAAAGAGGGCCATTT 59.556 43.478 6.18 6.76 0.00 2.32
700 1128 4.082245 CGTCATGTAAAAGAGGGCCATTTT 60.082 41.667 19.34 19.34 33.42 1.82
701 1129 5.124776 CGTCATGTAAAAGAGGGCCATTTTA 59.875 40.000 17.72 17.72 31.41 1.52
702 1130 6.183360 CGTCATGTAAAAGAGGGCCATTTTAT 60.183 38.462 21.99 11.12 34.41 1.40
703 1131 7.012894 CGTCATGTAAAAGAGGGCCATTTTATA 59.987 37.037 21.99 20.31 34.41 0.98
704 1132 8.691797 GTCATGTAAAAGAGGGCCATTTTATAA 58.308 33.333 21.99 16.31 34.41 0.98
714 1142 9.674705 AGAGGGCCATTTTATAAAATATTTCCT 57.325 29.630 20.32 20.99 36.52 3.36
734 1162 8.934023 TTTCCTAGATTGAGGTTATTTTGTGT 57.066 30.769 0.00 0.00 37.88 3.72
735 1163 8.934023 TTCCTAGATTGAGGTTATTTTGTGTT 57.066 30.769 0.00 0.00 37.88 3.32
736 1164 8.335532 TCCTAGATTGAGGTTATTTTGTGTTG 57.664 34.615 0.00 0.00 37.88 3.33
737 1165 8.160765 TCCTAGATTGAGGTTATTTTGTGTTGA 58.839 33.333 0.00 0.00 37.88 3.18
738 1166 8.792633 CCTAGATTGAGGTTATTTTGTGTTGAA 58.207 33.333 0.00 0.00 0.00 2.69
739 1167 9.831737 CTAGATTGAGGTTATTTTGTGTTGAAG 57.168 33.333 0.00 0.00 0.00 3.02
740 1168 8.237811 AGATTGAGGTTATTTTGTGTTGAAGT 57.762 30.769 0.00 0.00 0.00 3.01
741 1169 8.695456 AGATTGAGGTTATTTTGTGTTGAAGTT 58.305 29.630 0.00 0.00 0.00 2.66
742 1170 9.313118 GATTGAGGTTATTTTGTGTTGAAGTTT 57.687 29.630 0.00 0.00 0.00 2.66
743 1171 9.665719 ATTGAGGTTATTTTGTGTTGAAGTTTT 57.334 25.926 0.00 0.00 0.00 2.43
745 1173 9.796120 TGAGGTTATTTTGTGTTGAAGTTTTAG 57.204 29.630 0.00 0.00 0.00 1.85
752 1180 9.981114 ATTTTGTGTTGAAGTTTTAGATAAGGG 57.019 29.630 0.00 0.00 0.00 3.95
753 1181 6.569179 TGTGTTGAAGTTTTAGATAAGGGC 57.431 37.500 0.00 0.00 0.00 5.19
754 1182 5.475564 TGTGTTGAAGTTTTAGATAAGGGCC 59.524 40.000 0.00 0.00 0.00 5.80
755 1183 5.475564 GTGTTGAAGTTTTAGATAAGGGCCA 59.524 40.000 6.18 0.00 0.00 5.36
756 1184 5.710099 TGTTGAAGTTTTAGATAAGGGCCAG 59.290 40.000 6.18 0.00 0.00 4.85
757 1185 5.772393 TGAAGTTTTAGATAAGGGCCAGA 57.228 39.130 6.18 0.00 0.00 3.86
758 1186 6.327386 TGAAGTTTTAGATAAGGGCCAGAT 57.673 37.500 6.18 0.00 0.00 2.90
759 1187 6.731467 TGAAGTTTTAGATAAGGGCCAGATT 58.269 36.000 6.18 0.00 0.00 2.40
760 1188 7.182060 TGAAGTTTTAGATAAGGGCCAGATTT 58.818 34.615 6.18 0.00 0.00 2.17
761 1189 8.333235 TGAAGTTTTAGATAAGGGCCAGATTTA 58.667 33.333 6.18 0.00 0.00 1.40
762 1190 9.355916 GAAGTTTTAGATAAGGGCCAGATTTAT 57.644 33.333 6.18 0.06 0.00 1.40
763 1191 9.715119 AAGTTTTAGATAAGGGCCAGATTTATT 57.285 29.630 6.18 0.00 0.00 1.40
764 1192 9.355916 AGTTTTAGATAAGGGCCAGATTTATTC 57.644 33.333 6.18 0.00 0.00 1.75
765 1193 9.131791 GTTTTAGATAAGGGCCAGATTTATTCA 57.868 33.333 6.18 0.00 0.00 2.57
766 1194 9.881773 TTTTAGATAAGGGCCAGATTTATTCAT 57.118 29.630 6.18 0.00 0.00 2.57
767 1195 9.881773 TTTAGATAAGGGCCAGATTTATTCATT 57.118 29.630 6.18 0.00 0.00 2.57
768 1196 9.881773 TTAGATAAGGGCCAGATTTATTCATTT 57.118 29.630 6.18 0.00 0.00 2.32
769 1197 8.788238 AGATAAGGGCCAGATTTATTCATTTT 57.212 30.769 6.18 0.00 0.00 1.82
770 1198 8.864087 AGATAAGGGCCAGATTTATTCATTTTC 58.136 33.333 6.18 0.00 0.00 2.29
771 1199 6.872585 AAGGGCCAGATTTATTCATTTTCA 57.127 33.333 6.18 0.00 0.00 2.69
772 1200 6.225981 AGGGCCAGATTTATTCATTTTCAC 57.774 37.500 6.18 0.00 0.00 3.18
773 1201 5.129320 AGGGCCAGATTTATTCATTTTCACC 59.871 40.000 6.18 0.00 0.00 4.02
774 1202 5.129320 GGGCCAGATTTATTCATTTTCACCT 59.871 40.000 4.39 0.00 0.00 4.00
775 1203 6.323739 GGGCCAGATTTATTCATTTTCACCTA 59.676 38.462 4.39 0.00 0.00 3.08
776 1204 7.015584 GGGCCAGATTTATTCATTTTCACCTAT 59.984 37.037 4.39 0.00 0.00 2.57
777 1205 8.424133 GGCCAGATTTATTCATTTTCACCTATT 58.576 33.333 0.00 0.00 0.00 1.73
778 1206 9.822185 GCCAGATTTATTCATTTTCACCTATTT 57.178 29.630 0.00 0.00 0.00 1.40
786 1214 7.938563 TTCATTTTCACCTATTTTGAAACGG 57.061 32.000 0.00 0.00 41.55 4.44
787 1215 7.278461 TCATTTTCACCTATTTTGAAACGGA 57.722 32.000 0.00 0.00 41.55 4.69
788 1216 7.367285 TCATTTTCACCTATTTTGAAACGGAG 58.633 34.615 0.00 0.00 41.55 4.63
789 1217 5.699097 TTTCACCTATTTTGAAACGGAGG 57.301 39.130 0.00 0.00 37.91 4.30
790 1218 3.681593 TCACCTATTTTGAAACGGAGGG 58.318 45.455 4.54 0.00 0.00 4.30
791 1219 3.328343 TCACCTATTTTGAAACGGAGGGA 59.672 43.478 4.54 0.00 0.00 4.20
792 1220 3.689649 CACCTATTTTGAAACGGAGGGAG 59.310 47.826 4.54 0.00 0.00 4.30
793 1221 3.329814 ACCTATTTTGAAACGGAGGGAGT 59.670 43.478 4.54 0.00 0.00 3.85
794 1222 4.533311 ACCTATTTTGAAACGGAGGGAGTA 59.467 41.667 4.54 0.00 0.00 2.59
795 1223 5.116882 CCTATTTTGAAACGGAGGGAGTAG 58.883 45.833 0.00 0.00 0.00 2.57
796 1224 4.903045 ATTTTGAAACGGAGGGAGTAGA 57.097 40.909 0.00 0.00 0.00 2.59
797 1225 3.672767 TTTGAAACGGAGGGAGTAGAC 57.327 47.619 0.00 0.00 0.00 2.59
798 1226 1.171308 TGAAACGGAGGGAGTAGACG 58.829 55.000 0.00 0.00 0.00 4.18
799 1227 0.455005 GAAACGGAGGGAGTAGACGG 59.545 60.000 0.00 0.00 0.00 4.79
800 1228 0.969409 AAACGGAGGGAGTAGACGGG 60.969 60.000 0.00 0.00 0.00 5.28
801 1229 1.856539 AACGGAGGGAGTAGACGGGA 61.857 60.000 0.00 0.00 0.00 5.14
802 1230 1.526455 CGGAGGGAGTAGACGGGAG 60.526 68.421 0.00 0.00 0.00 4.30
803 1231 1.829096 GGAGGGAGTAGACGGGAGC 60.829 68.421 0.00 0.00 0.00 4.70
804 1232 1.227946 GAGGGAGTAGACGGGAGCT 59.772 63.158 0.00 0.00 0.00 4.09
805 1233 1.076632 AGGGAGTAGACGGGAGCTG 60.077 63.158 0.00 0.00 0.00 4.24
806 1234 2.787567 GGGAGTAGACGGGAGCTGC 61.788 68.421 0.00 0.00 0.00 5.25
807 1235 2.052690 GGAGTAGACGGGAGCTGCA 61.053 63.158 7.79 0.00 0.00 4.41
808 1236 1.395826 GGAGTAGACGGGAGCTGCAT 61.396 60.000 7.79 0.00 0.00 3.96
809 1237 0.249238 GAGTAGACGGGAGCTGCATG 60.249 60.000 7.79 0.74 0.00 4.06
810 1238 1.884926 GTAGACGGGAGCTGCATGC 60.885 63.158 11.82 11.82 43.29 4.06
811 1239 3.094062 TAGACGGGAGCTGCATGCC 62.094 63.158 16.68 0.00 44.23 4.40
812 1240 4.783621 GACGGGAGCTGCATGCCA 62.784 66.667 16.68 2.21 44.23 4.92
813 1241 4.349503 ACGGGAGCTGCATGCCAA 62.350 61.111 16.68 0.00 44.23 4.52
814 1242 3.063704 CGGGAGCTGCATGCCAAA 61.064 61.111 16.68 0.00 44.23 3.28
834 1262 6.536941 GCCAAACAAAGGAATTGAGTTTTACA 59.463 34.615 0.00 0.00 41.85 2.41
865 1293 9.799106 ATGAATATCCGTATCTTTTTGAGGATT 57.201 29.630 0.00 0.00 39.07 3.01
942 1372 2.858344 CGCTTCGAACGTTATCTCCAAT 59.142 45.455 0.00 0.00 0.00 3.16
1079 1512 4.254672 CGTACGCCGCATCCCGTA 62.255 66.667 0.52 0.00 38.75 4.02
1224 1657 0.489567 ACCACCTCTCCACCTTCTCT 59.510 55.000 0.00 0.00 0.00 3.10
1484 1917 3.371063 ACCGTGCTCGTCATCCGT 61.371 61.111 7.47 0.00 37.94 4.69
1584 2040 0.598680 CGCACTATCCCAGCAGTAGC 60.599 60.000 0.00 0.00 42.56 3.58
1590 2046 3.967326 ACTATCCCAGCAGTAGCAATACA 59.033 43.478 0.00 0.00 45.49 2.29
1591 2047 3.931907 ATCCCAGCAGTAGCAATACAA 57.068 42.857 0.00 0.00 45.49 2.41
1592 2048 3.931907 TCCCAGCAGTAGCAATACAAT 57.068 42.857 0.00 0.00 45.49 2.71
1593 2049 3.808728 TCCCAGCAGTAGCAATACAATC 58.191 45.455 0.00 0.00 45.49 2.67
1594 2050 3.455910 TCCCAGCAGTAGCAATACAATCT 59.544 43.478 0.00 0.00 45.49 2.40
1595 2051 4.653801 TCCCAGCAGTAGCAATACAATCTA 59.346 41.667 0.00 0.00 45.49 1.98
1646 2107 3.181480 ACAAGAAAACCACCACATTTCCG 60.181 43.478 0.00 0.00 34.39 4.30
1652 2113 0.322098 CCACCACATTTCCGTAGCCA 60.322 55.000 0.00 0.00 0.00 4.75
1690 2151 3.181509 CGTGTACTCTACTGGTAGTGCTG 60.182 52.174 7.52 1.35 34.84 4.41
1691 2152 3.757493 GTGTACTCTACTGGTAGTGCTGT 59.243 47.826 7.52 5.97 34.84 4.40
1725 2186 6.785337 TGATTCAGAGAACGTAGGGAATTA 57.215 37.500 0.00 0.00 0.00 1.40
1790 2259 8.438513 CGCAATCACTATCATAATCTTGGTTAG 58.561 37.037 0.00 0.00 0.00 2.34
1838 2307 2.808523 AGCAGAAAGGCTTTTGCTTC 57.191 45.000 28.21 13.90 43.91 3.86
1839 2308 2.034124 AGCAGAAAGGCTTTTGCTTCA 58.966 42.857 28.21 0.00 43.91 3.02
1840 2309 2.130395 GCAGAAAGGCTTTTGCTTCAC 58.870 47.619 25.90 10.67 46.54 3.18
1841 2310 2.223900 GCAGAAAGGCTTTTGCTTCACT 60.224 45.455 25.90 12.34 46.54 3.41
1842 2311 3.739209 GCAGAAAGGCTTTTGCTTCACTT 60.739 43.478 25.90 1.19 46.54 3.16
1854 2323 2.224281 TGCTTCACTTCACGGAACAGAT 60.224 45.455 0.00 0.00 0.00 2.90
2050 2519 4.475135 GAGCTCCCCGCCCAGAAC 62.475 72.222 0.87 0.00 40.39 3.01
2159 2634 1.216710 GCTGGTGCTCGCTAGACTT 59.783 57.895 0.00 0.00 36.03 3.01
2161 2636 0.528017 CTGGTGCTCGCTAGACTTCA 59.472 55.000 0.00 0.00 0.00 3.02
2171 2686 4.973396 TCGCTAGACTTCATGCAATTTTG 58.027 39.130 0.00 0.00 0.00 2.44
2182 2697 2.309613 TGCAATTTTGTGGAGTGCTCT 58.690 42.857 0.00 0.00 36.18 4.09
2183 2698 2.034939 TGCAATTTTGTGGAGTGCTCTG 59.965 45.455 0.00 0.00 36.18 3.35
2197 2712 3.441572 AGTGCTCTGTAACCATCAAATGC 59.558 43.478 0.00 0.00 0.00 3.56
2198 2713 3.191162 GTGCTCTGTAACCATCAAATGCA 59.809 43.478 0.00 0.00 0.00 3.96
2237 2752 1.066143 CGAATTACCACTGAGGCCTGT 60.066 52.381 12.00 3.31 43.14 4.00
2281 2796 7.402054 TGAATGTGTATGTAGAGGAACCAAAT 58.598 34.615 0.00 0.00 0.00 2.32
2297 2812 6.403866 AACCAAATTGCTTGACTGTAATGA 57.596 33.333 0.00 0.00 37.17 2.57
2301 2816 6.309494 CCAAATTGCTTGACTGTAATGACATG 59.691 38.462 0.00 0.00 37.17 3.21
2306 2821 6.804677 TGCTTGACTGTAATGACATGTTTTT 58.195 32.000 0.00 0.00 34.24 1.94
2310 2825 7.809546 TGACTGTAATGACATGTTTTTGGTA 57.190 32.000 0.00 0.00 34.24 3.25
2312 2827 8.511321 TGACTGTAATGACATGTTTTTGGTATC 58.489 33.333 0.00 0.00 34.24 2.24
2314 2829 8.514594 ACTGTAATGACATGTTTTTGGTATCTG 58.485 33.333 0.00 0.00 34.24 2.90
2315 2830 8.628630 TGTAATGACATGTTTTTGGTATCTGA 57.371 30.769 0.00 0.00 0.00 3.27
2316 2831 9.241919 TGTAATGACATGTTTTTGGTATCTGAT 57.758 29.630 0.00 0.00 0.00 2.90
2343 2860 5.833406 TTCTCACTTTGTTGATTGCTTGA 57.167 34.783 0.00 0.00 0.00 3.02
2376 2893 2.746279 AAAACCCCATGTCTCACACA 57.254 45.000 0.00 0.00 40.18 3.72
2428 2957 6.543831 ACATATCGCTTTGGCTTCTAAATCTT 59.456 34.615 0.00 0.00 36.09 2.40
2429 2958 5.904362 ATCGCTTTGGCTTCTAAATCTTT 57.096 34.783 0.00 0.00 36.09 2.52
2436 2965 7.578380 GCTTTGGCTTCTAAATCTTTGAGGATT 60.578 37.037 0.00 0.00 35.20 3.01
2439 2968 7.121382 TGGCTTCTAAATCTTTGAGGATTGAT 58.879 34.615 0.00 0.00 36.24 2.57
2458 2987 6.715344 TTGATGTTAACTACAGCCGTTTAG 57.285 37.500 7.22 0.00 42.49 1.85
2486 3018 4.911514 TTCGTTTTAAGAAGCAAAGCCT 57.088 36.364 0.00 0.00 0.00 4.58
2488 3020 3.252458 TCGTTTTAAGAAGCAAAGCCTCC 59.748 43.478 0.00 0.00 0.00 4.30
2489 3021 3.253432 CGTTTTAAGAAGCAAAGCCTCCT 59.747 43.478 0.00 0.00 0.00 3.69
2490 3022 4.550422 GTTTTAAGAAGCAAAGCCTCCTG 58.450 43.478 0.00 0.00 0.00 3.86
2497 3032 1.382692 GCAAAGCCTCCTGGATCTGC 61.383 60.000 0.00 0.56 34.57 4.26
2499 3034 0.034670 AAAGCCTCCTGGATCTGCAC 60.035 55.000 13.35 0.00 34.57 4.57
2502 3037 1.908340 GCCTCCTGGATCTGCACAGT 61.908 60.000 0.00 0.00 34.57 3.55
2508 3043 0.616891 TGGATCTGCACAGTCAGCAT 59.383 50.000 0.00 0.00 41.82 3.79
2514 3049 4.743057 TCTGCACAGTCAGCATATAGTT 57.257 40.909 0.00 0.00 41.82 2.24
2547 3108 7.696992 AATCGTCTTATAAAAACACCCACAT 57.303 32.000 0.00 0.00 0.00 3.21
2550 3111 8.795842 TCGTCTTATAAAAACACCCACATAAT 57.204 30.769 0.00 0.00 0.00 1.28
2569 3130 8.729756 CACATAATTTACATGACAAGGTCAGAA 58.270 33.333 0.00 0.00 46.04 3.02
2575 3137 8.408043 TTTACATGACAAGGTCAGAATTTGAT 57.592 30.769 0.00 0.00 46.04 2.57
2589 3151 4.704057 AGAATTTGATGGTTCTTCTCTGCC 59.296 41.667 0.00 0.00 30.84 4.85
2600 3162 2.072298 CTTCTCTGCCACTGTACTTGC 58.928 52.381 0.00 0.00 0.00 4.01
2607 3171 1.350193 CCACTGTACTTGCTACTGCG 58.650 55.000 0.00 0.00 43.34 5.18
2632 3215 4.202121 CCTGAATGGATCCAAGCATTCTTG 60.202 45.833 20.67 13.59 42.84 3.02
2643 3226 1.992170 GCATTCTTGCTGCTTGAAGG 58.008 50.000 12.66 12.66 45.77 3.46
2644 3227 1.403780 GCATTCTTGCTGCTTGAAGGG 60.404 52.381 16.45 10.98 45.77 3.95
2645 3228 1.891150 CATTCTTGCTGCTTGAAGGGT 59.109 47.619 0.00 0.00 0.00 4.34
2646 3229 1.321474 TTCTTGCTGCTTGAAGGGTG 58.679 50.000 0.00 0.00 0.00 4.61
2647 3230 0.473755 TCTTGCTGCTTGAAGGGTGA 59.526 50.000 0.00 0.00 0.00 4.02
2648 3231 0.879765 CTTGCTGCTTGAAGGGTGAG 59.120 55.000 0.00 0.00 0.00 3.51
2649 3232 0.538057 TTGCTGCTTGAAGGGTGAGG 60.538 55.000 0.00 0.00 0.00 3.86
2650 3233 1.073897 GCTGCTTGAAGGGTGAGGT 59.926 57.895 0.00 0.00 0.00 3.85
2651 3234 1.239968 GCTGCTTGAAGGGTGAGGTG 61.240 60.000 0.00 0.00 0.00 4.00
2652 3235 0.607489 CTGCTTGAAGGGTGAGGTGG 60.607 60.000 0.00 0.00 0.00 4.61
2653 3236 1.352622 TGCTTGAAGGGTGAGGTGGT 61.353 55.000 0.00 0.00 0.00 4.16
2654 3237 0.890996 GCTTGAAGGGTGAGGTGGTG 60.891 60.000 0.00 0.00 0.00 4.17
2655 3238 0.474184 CTTGAAGGGTGAGGTGGTGT 59.526 55.000 0.00 0.00 0.00 4.16
2656 3239 0.923358 TTGAAGGGTGAGGTGGTGTT 59.077 50.000 0.00 0.00 0.00 3.32
2657 3240 1.809133 TGAAGGGTGAGGTGGTGTTA 58.191 50.000 0.00 0.00 0.00 2.41
2658 3241 2.344592 TGAAGGGTGAGGTGGTGTTAT 58.655 47.619 0.00 0.00 0.00 1.89
2659 3242 2.714250 TGAAGGGTGAGGTGGTGTTATT 59.286 45.455 0.00 0.00 0.00 1.40
2677 3260 7.118390 GGTGTTATTGGCTGAAGCATATACTAG 59.882 40.741 4.43 0.00 44.36 2.57
2703 3305 9.269453 GTTTACAACATATAATGTACTCCCTCC 57.731 37.037 0.00 0.00 44.07 4.30
2704 3306 6.435292 ACAACATATAATGTACTCCCTCCC 57.565 41.667 0.00 0.00 44.07 4.30
2715 3317 5.214293 TGTACTCCCTCCCTTCCTAAATAC 58.786 45.833 0.00 0.00 0.00 1.89
2716 3318 4.645968 ACTCCCTCCCTTCCTAAATACT 57.354 45.455 0.00 0.00 0.00 2.12
2717 3319 4.974194 ACTCCCTCCCTTCCTAAATACTT 58.026 43.478 0.00 0.00 0.00 2.24
2719 3321 4.706616 TCCCTCCCTTCCTAAATACTTGT 58.293 43.478 0.00 0.00 0.00 3.16
2720 3322 5.105853 TCCCTCCCTTCCTAAATACTTGTT 58.894 41.667 0.00 0.00 0.00 2.83
2721 3323 5.554350 TCCCTCCCTTCCTAAATACTTGTTT 59.446 40.000 0.00 0.00 0.00 2.83
2724 3326 7.093902 CCCTCCCTTCCTAAATACTTGTTTTTC 60.094 40.741 0.00 0.00 0.00 2.29
2726 3328 9.734984 CTCCCTTCCTAAATACTTGTTTTTCTA 57.265 33.333 0.00 0.00 0.00 2.10
2728 3330 9.734984 CCCTTCCTAAATACTTGTTTTTCTAGA 57.265 33.333 0.00 0.00 0.00 2.43
2753 3355 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
2754 3356 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
2756 3358 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
2758 3360 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
2759 3361 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
2798 3400 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2799 3401 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2800 3402 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2801 3403 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2802 3404 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2803 3405 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2804 3406 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2805 3407 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2806 3408 3.932710 TCACTCATTTTGCTCCGTATGTC 59.067 43.478 0.00 0.00 0.00 3.06
2807 3409 2.930040 ACTCATTTTGCTCCGTATGTCG 59.070 45.455 0.00 0.00 39.52 4.35
2808 3410 2.930040 CTCATTTTGCTCCGTATGTCGT 59.070 45.455 0.00 0.00 37.94 4.34
2809 3411 2.927477 TCATTTTGCTCCGTATGTCGTC 59.073 45.455 0.00 0.00 37.94 4.20
2810 3412 2.442212 TTTTGCTCCGTATGTCGTCA 57.558 45.000 0.00 0.00 37.94 4.35
2811 3413 1.705256 TTTGCTCCGTATGTCGTCAC 58.295 50.000 0.00 0.00 37.94 3.67
2812 3414 0.885879 TTGCTCCGTATGTCGTCACT 59.114 50.000 0.00 0.00 37.94 3.41
2813 3415 0.885879 TGCTCCGTATGTCGTCACTT 59.114 50.000 0.00 0.00 37.94 3.16
2814 3416 1.269166 GCTCCGTATGTCGTCACTTG 58.731 55.000 0.00 0.00 37.94 3.16
2815 3417 1.402456 GCTCCGTATGTCGTCACTTGT 60.402 52.381 0.00 0.00 37.94 3.16
2816 3418 2.925306 GCTCCGTATGTCGTCACTTGTT 60.925 50.000 0.00 0.00 37.94 2.83
2817 3419 2.661675 CTCCGTATGTCGTCACTTGTTG 59.338 50.000 0.00 0.00 37.94 3.33
2818 3420 2.293955 TCCGTATGTCGTCACTTGTTGA 59.706 45.455 0.00 0.00 37.94 3.18
2819 3421 3.054166 CCGTATGTCGTCACTTGTTGAA 58.946 45.455 0.00 0.00 35.39 2.69
2820 3422 3.491639 CCGTATGTCGTCACTTGTTGAAA 59.508 43.478 0.00 0.00 35.39 2.69
2821 3423 4.151689 CCGTATGTCGTCACTTGTTGAAAT 59.848 41.667 0.00 0.00 35.39 2.17
2822 3424 5.072823 CGTATGTCGTCACTTGTTGAAATG 58.927 41.667 0.00 0.00 35.39 2.32
2823 3425 3.332761 TGTCGTCACTTGTTGAAATGC 57.667 42.857 0.00 0.00 35.39 3.56
2824 3426 2.032799 TGTCGTCACTTGTTGAAATGCC 59.967 45.455 0.00 0.00 35.39 4.40
2825 3427 2.290641 GTCGTCACTTGTTGAAATGCCT 59.709 45.455 0.00 0.00 35.39 4.75
2826 3428 3.496884 GTCGTCACTTGTTGAAATGCCTA 59.503 43.478 0.00 0.00 35.39 3.93
2827 3429 3.745975 TCGTCACTTGTTGAAATGCCTAG 59.254 43.478 0.00 0.00 35.39 3.02
2828 3430 3.745975 CGTCACTTGTTGAAATGCCTAGA 59.254 43.478 0.00 0.00 35.39 2.43
2829 3431 4.213270 CGTCACTTGTTGAAATGCCTAGAA 59.787 41.667 0.00 0.00 35.39 2.10
2830 3432 5.277779 CGTCACTTGTTGAAATGCCTAGAAA 60.278 40.000 0.00 0.00 35.39 2.52
2831 3433 6.145535 GTCACTTGTTGAAATGCCTAGAAAG 58.854 40.000 0.00 0.00 35.39 2.62
2832 3434 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
2833 3435 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
2834 3436 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
2835 3437 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
2836 3438 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
2844 3446 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
2848 3450 8.041919 GCCTAGAAAGACAAGTATTTAGGAACT 58.958 37.037 11.40 0.50 46.37 3.01
2852 3454 8.097662 AGAAAGACAAGTATTTAGGAACTGAGG 58.902 37.037 0.00 0.00 41.52 3.86
2853 3455 6.301169 AGACAAGTATTTAGGAACTGAGGG 57.699 41.667 0.00 0.00 41.52 4.30
2858 3460 7.624077 ACAAGTATTTAGGAACTGAGGGAGTAT 59.376 37.037 0.00 0.00 41.52 2.12
2865 3467 3.462021 GAACTGAGGGAGTATGATGCAC 58.538 50.000 0.00 0.00 33.09 4.57
2896 3498 3.996150 ACTGAACAACTTGGAGCATTG 57.004 42.857 0.00 0.00 0.00 2.82
2907 3509 7.992608 ACAACTTGGAGCATTGTCATATGTATA 59.007 33.333 1.90 0.00 30.82 1.47
2921 3523 7.501892 TGTCATATGTATAGCAAAATTCCTGCA 59.498 33.333 13.31 0.00 42.48 4.41
2936 3538 2.109128 TCCTGCAAACTTTGTATGGGGA 59.891 45.455 3.48 0.15 0.00 4.81
2937 3539 3.099141 CCTGCAAACTTTGTATGGGGAT 58.901 45.455 3.48 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.391130 CGGTTTGAGCTTCCCGATGA 60.391 55.000 8.15 0.00 43.01 2.92
18 19 1.745489 GCGGTTTGAGCTTCCCGAT 60.745 57.895 15.61 0.00 43.01 4.18
20 21 2.668212 TGCGGTTTGAGCTTCCCG 60.668 61.111 9.20 9.20 43.22 5.14
24 25 2.597510 GGGGTGCGGTTTGAGCTT 60.598 61.111 0.00 0.00 35.28 3.74
42 43 1.599542 GATTGAGTTGGATGTAGGCGC 59.400 52.381 0.00 0.00 0.00 6.53
43 44 2.905075 TGATTGAGTTGGATGTAGGCG 58.095 47.619 0.00 0.00 0.00 5.52
44 45 4.142381 GGTTTGATTGAGTTGGATGTAGGC 60.142 45.833 0.00 0.00 0.00 3.93
45 46 5.124457 CAGGTTTGATTGAGTTGGATGTAGG 59.876 44.000 0.00 0.00 0.00 3.18
80 82 1.681166 CCTTGGGAGCAATGAGTGAGG 60.681 57.143 0.00 0.00 0.00 3.86
90 92 2.410322 ATTGCACGTCCTTGGGAGCA 62.410 55.000 0.00 0.00 30.36 4.26
91 93 1.244019 AATTGCACGTCCTTGGGAGC 61.244 55.000 0.00 0.00 29.39 4.70
102 148 1.295357 TGCACCTCCGTAATTGCACG 61.295 55.000 0.00 0.00 40.01 5.34
122 168 2.297701 ACTCAAACAAGGACGCAACAT 58.702 42.857 0.00 0.00 0.00 2.71
127 173 4.028852 AGAAAAACTCAAACAAGGACGC 57.971 40.909 0.00 0.00 0.00 5.19
149 195 1.269051 GGAACTTGGAACACCGCAAAG 60.269 52.381 0.00 0.00 39.29 2.77
151 197 0.394488 TGGAACTTGGAACACCGCAA 60.394 50.000 0.00 0.00 39.29 4.85
152 198 0.394488 TTGGAACTTGGAACACCGCA 60.394 50.000 0.00 0.00 39.29 5.69
153 199 0.310854 CTTGGAACTTGGAACACCGC 59.689 55.000 0.00 0.00 39.29 5.68
154 200 1.675552 ACTTGGAACTTGGAACACCG 58.324 50.000 0.00 0.00 39.29 4.94
155 201 3.020984 TGAACTTGGAACTTGGAACACC 58.979 45.455 0.00 0.00 39.29 4.16
156 202 4.918810 ATGAACTTGGAACTTGGAACAC 57.081 40.909 0.00 0.00 39.29 3.32
157 203 4.952957 TCAATGAACTTGGAACTTGGAACA 59.047 37.500 0.00 0.00 35.43 3.18
158 204 5.514274 TCAATGAACTTGGAACTTGGAAC 57.486 39.130 0.00 0.00 35.43 3.62
159 205 6.729690 AATCAATGAACTTGGAACTTGGAA 57.270 33.333 0.00 0.00 35.43 3.53
160 206 6.729690 AAATCAATGAACTTGGAACTTGGA 57.270 33.333 0.00 0.00 35.43 3.53
161 207 7.790823 AAAAATCAATGAACTTGGAACTTGG 57.209 32.000 0.00 0.00 35.43 3.61
213 262 8.561738 ACTGAAGTTGTATCGGATTAACAATT 57.438 30.769 15.56 7.74 35.72 2.32
250 299 8.993424 AGGAATCATTGGACTACATAAACTAGT 58.007 33.333 0.00 0.00 0.00 2.57
251 300 9.482627 GAGGAATCATTGGACTACATAAACTAG 57.517 37.037 0.00 0.00 0.00 2.57
277 326 7.266946 ACGGAGTAGAGAACAGACGAAGTTG 62.267 48.000 0.00 0.00 40.88 3.16
278 327 5.280940 ACGGAGTAGAGAACAGACGAAGTT 61.281 45.833 0.00 0.00 40.88 2.66
279 328 3.806507 ACGGAGTAGAGAACAGACGAAGT 60.807 47.826 0.00 0.00 44.52 3.01
280 329 2.743126 ACGGAGTAGAGAACAGACGAAG 59.257 50.000 0.00 0.00 41.94 3.79
281 330 2.775890 ACGGAGTAGAGAACAGACGAA 58.224 47.619 0.00 0.00 41.94 3.85
282 331 2.469274 ACGGAGTAGAGAACAGACGA 57.531 50.000 0.00 0.00 41.94 4.20
296 345 9.065871 CATTTTTATTTAGAGCAAAAGACGGAG 57.934 33.333 0.00 0.00 0.00 4.63
297 346 8.788806 TCATTTTTATTTAGAGCAAAAGACGGA 58.211 29.630 0.00 0.00 0.00 4.69
298 347 8.964420 TCATTTTTATTTAGAGCAAAAGACGG 57.036 30.769 0.00 0.00 0.00 4.79
301 350 9.926158 TGCATCATTTTTATTTAGAGCAAAAGA 57.074 25.926 0.00 0.00 0.00 2.52
304 353 9.872721 TCATGCATCATTTTTATTTAGAGCAAA 57.127 25.926 0.00 0.00 0.00 3.68
315 364 9.407380 AGTAACAGGTATCATGCATCATTTTTA 57.593 29.630 0.00 0.00 0.00 1.52
316 365 8.297470 AGTAACAGGTATCATGCATCATTTTT 57.703 30.769 0.00 0.00 0.00 1.94
317 366 7.886629 AGTAACAGGTATCATGCATCATTTT 57.113 32.000 0.00 0.00 0.00 1.82
318 367 7.557358 TGAAGTAACAGGTATCATGCATCATTT 59.443 33.333 0.00 0.00 0.00 2.32
319 368 7.056006 TGAAGTAACAGGTATCATGCATCATT 58.944 34.615 0.00 0.00 0.00 2.57
320 369 6.594744 TGAAGTAACAGGTATCATGCATCAT 58.405 36.000 0.00 0.00 0.00 2.45
321 370 5.988287 TGAAGTAACAGGTATCATGCATCA 58.012 37.500 0.00 0.00 0.00 3.07
322 371 6.148480 GGATGAAGTAACAGGTATCATGCATC 59.852 42.308 0.00 0.00 38.33 3.91
323 372 6.000219 GGATGAAGTAACAGGTATCATGCAT 59.000 40.000 0.00 0.00 38.33 3.96
324 373 5.368145 GGATGAAGTAACAGGTATCATGCA 58.632 41.667 0.00 0.00 38.33 3.96
325 374 4.449068 CGGATGAAGTAACAGGTATCATGC 59.551 45.833 0.00 0.00 36.06 4.06
326 375 5.601662 ACGGATGAAGTAACAGGTATCATG 58.398 41.667 0.00 0.00 31.24 3.07
327 376 5.871396 ACGGATGAAGTAACAGGTATCAT 57.129 39.130 0.00 0.00 33.64 2.45
328 377 5.670792 AACGGATGAAGTAACAGGTATCA 57.329 39.130 0.00 0.00 0.00 2.15
329 378 6.980051 AAAACGGATGAAGTAACAGGTATC 57.020 37.500 0.00 0.00 0.00 2.24
330 379 8.851541 TTTAAAACGGATGAAGTAACAGGTAT 57.148 30.769 0.00 0.00 0.00 2.73
331 380 8.674263 TTTTAAAACGGATGAAGTAACAGGTA 57.326 30.769 0.00 0.00 0.00 3.08
332 381 7.571080 TTTTAAAACGGATGAAGTAACAGGT 57.429 32.000 0.00 0.00 0.00 4.00
333 382 9.769093 CTATTTTAAAACGGATGAAGTAACAGG 57.231 33.333 1.97 0.00 0.00 4.00
384 433 9.716531 GACCCAACTTTATACTAACTTTGTACT 57.283 33.333 0.00 0.00 0.00 2.73
385 434 9.492973 TGACCCAACTTTATACTAACTTTGTAC 57.507 33.333 0.00 0.00 0.00 2.90
387 436 9.227777 GATGACCCAACTTTATACTAACTTTGT 57.772 33.333 0.00 0.00 0.00 2.83
388 437 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
395 444 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
396 445 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
398 447 8.917088 CATCCAAAATAGATGACCCAACTTTAT 58.083 33.333 0.00 0.00 43.15 1.40
399 448 8.112822 TCATCCAAAATAGATGACCCAACTTTA 58.887 33.333 0.00 0.00 43.96 1.85
400 449 6.953520 TCATCCAAAATAGATGACCCAACTTT 59.046 34.615 0.00 0.00 43.96 2.66
401 450 6.493166 TCATCCAAAATAGATGACCCAACTT 58.507 36.000 0.00 0.00 43.96 2.66
402 451 6.078456 TCATCCAAAATAGATGACCCAACT 57.922 37.500 0.00 0.00 43.96 3.16
410 459 9.656040 TTTGTCCATTTTCATCCAAAATAGATG 57.344 29.630 0.00 0.00 41.94 2.90
412 461 9.487790 GTTTTGTCCATTTTCATCCAAAATAGA 57.512 29.630 0.00 0.00 41.94 1.98
414 463 9.270640 CAGTTTTGTCCATTTTCATCCAAAATA 57.729 29.630 0.00 0.00 41.94 1.40
415 464 7.229106 CCAGTTTTGTCCATTTTCATCCAAAAT 59.771 33.333 0.00 0.00 44.25 1.82
419 468 4.653341 ACCAGTTTTGTCCATTTTCATCCA 59.347 37.500 0.00 0.00 0.00 3.41
433 482 7.391554 TGAAGATTCAGATAAGGACCAGTTTTG 59.608 37.037 0.00 0.00 32.50 2.44
438 487 6.314896 GTGTTGAAGATTCAGATAAGGACCAG 59.685 42.308 0.00 0.00 38.61 4.00
440 489 6.173339 TGTGTTGAAGATTCAGATAAGGACC 58.827 40.000 0.00 0.00 38.61 4.46
442 491 8.690203 TTTTGTGTTGAAGATTCAGATAAGGA 57.310 30.769 0.00 0.00 38.61 3.36
443 492 9.350357 CATTTTGTGTTGAAGATTCAGATAAGG 57.650 33.333 0.00 0.00 38.61 2.69
444 493 9.350357 CCATTTTGTGTTGAAGATTCAGATAAG 57.650 33.333 0.00 0.00 38.61 1.73
445 494 7.814107 GCCATTTTGTGTTGAAGATTCAGATAA 59.186 33.333 0.00 0.00 38.61 1.75
446 495 7.315142 GCCATTTTGTGTTGAAGATTCAGATA 58.685 34.615 0.00 0.00 38.61 1.98
447 496 6.161381 GCCATTTTGTGTTGAAGATTCAGAT 58.839 36.000 0.00 0.00 38.61 2.90
448 497 5.509501 GGCCATTTTGTGTTGAAGATTCAGA 60.510 40.000 0.00 0.00 38.61 3.27
449 498 4.687483 GGCCATTTTGTGTTGAAGATTCAG 59.313 41.667 0.00 0.00 38.61 3.02
450 499 4.502950 GGGCCATTTTGTGTTGAAGATTCA 60.503 41.667 4.39 0.00 34.92 2.57
451 500 3.996363 GGGCCATTTTGTGTTGAAGATTC 59.004 43.478 4.39 0.00 0.00 2.52
454 503 1.691434 GGGGCCATTTTGTGTTGAAGA 59.309 47.619 4.39 0.00 0.00 2.87
455 504 1.415659 TGGGGCCATTTTGTGTTGAAG 59.584 47.619 4.39 0.00 0.00 3.02
456 505 1.500474 TGGGGCCATTTTGTGTTGAA 58.500 45.000 4.39 0.00 0.00 2.69
457 506 1.500474 TTGGGGCCATTTTGTGTTGA 58.500 45.000 4.39 0.00 0.00 3.18
458 507 2.038820 AGATTGGGGCCATTTTGTGTTG 59.961 45.455 4.39 0.00 0.00 3.33
459 508 2.038820 CAGATTGGGGCCATTTTGTGTT 59.961 45.455 4.39 0.00 0.00 3.32
461 510 1.065998 CCAGATTGGGGCCATTTTGTG 60.066 52.381 4.39 0.00 32.67 3.33
462 511 1.203288 TCCAGATTGGGGCCATTTTGT 60.203 47.619 4.39 0.00 38.32 2.83
463 512 1.570803 TCCAGATTGGGGCCATTTTG 58.429 50.000 4.39 0.00 38.32 2.44
464 513 2.340721 TTCCAGATTGGGGCCATTTT 57.659 45.000 4.39 0.00 38.32 1.82
465 514 2.340721 TTTCCAGATTGGGGCCATTT 57.659 45.000 4.39 0.00 38.32 2.32
466 515 2.340721 TTTTCCAGATTGGGGCCATT 57.659 45.000 4.39 0.00 38.32 3.16
467 516 2.340721 TTTTTCCAGATTGGGGCCAT 57.659 45.000 4.39 0.00 38.32 4.40
485 534 2.256306 AGGGGCCATTTCGTGATTTTT 58.744 42.857 4.39 0.00 0.00 1.94
487 536 1.937191 AAGGGGCCATTTCGTGATTT 58.063 45.000 4.39 0.00 0.00 2.17
488 537 1.937191 AAAGGGGCCATTTCGTGATT 58.063 45.000 10.95 0.00 0.00 2.57
489 538 1.550072 CAAAAGGGGCCATTTCGTGAT 59.450 47.619 17.49 0.00 0.00 3.06
490 539 0.965439 CAAAAGGGGCCATTTCGTGA 59.035 50.000 17.49 0.00 0.00 4.35
491 540 0.670239 GCAAAAGGGGCCATTTCGTG 60.670 55.000 17.49 13.38 0.00 4.35
492 541 1.118356 TGCAAAAGGGGCCATTTCGT 61.118 50.000 17.49 0.00 0.00 3.85
493 542 0.249955 ATGCAAAAGGGGCCATTTCG 59.750 50.000 17.49 6.98 0.00 3.46
494 543 1.278699 TCATGCAAAAGGGGCCATTTC 59.721 47.619 17.49 6.02 0.00 2.17
495 544 1.003464 GTCATGCAAAAGGGGCCATTT 59.997 47.619 10.95 10.95 0.00 2.32
496 545 0.614812 GTCATGCAAAAGGGGCCATT 59.385 50.000 4.39 0.00 0.00 3.16
498 547 2.274645 CGTCATGCAAAAGGGGCCA 61.275 57.895 4.39 0.00 0.00 5.36
499 548 2.573340 CGTCATGCAAAAGGGGCC 59.427 61.111 0.00 0.00 0.00 5.80
500 549 2.125952 GCGTCATGCAAAAGGGGC 60.126 61.111 0.00 0.00 45.45 5.80
509 558 1.299468 CTAGTCTCGGGCGTCATGC 60.299 63.158 0.00 0.00 45.38 4.06
510 559 1.360551 CCTAGTCTCGGGCGTCATG 59.639 63.158 0.00 0.00 0.00 3.07
511 560 1.828660 CCCTAGTCTCGGGCGTCAT 60.829 63.158 0.00 0.00 34.32 3.06
512 561 2.439701 CCCTAGTCTCGGGCGTCA 60.440 66.667 0.00 0.00 34.32 4.35
520 569 1.464376 TAGCATGGCGCCCTAGTCTC 61.464 60.000 26.77 5.89 44.04 3.36
523 572 0.833834 ATCTAGCATGGCGCCCTAGT 60.834 55.000 27.21 17.05 44.04 2.57
524 573 1.135915 CTATCTAGCATGGCGCCCTAG 59.864 57.143 26.77 25.32 44.04 3.02
525 574 1.186200 CTATCTAGCATGGCGCCCTA 58.814 55.000 26.77 17.07 44.04 3.53
526 575 1.978473 CTATCTAGCATGGCGCCCT 59.022 57.895 26.77 16.82 44.04 5.19
527 576 4.606071 CTATCTAGCATGGCGCCC 57.394 61.111 26.77 8.84 44.04 6.13
538 587 1.889170 CCTGAGGCGTCATGCTATCTA 59.111 52.381 9.94 0.00 45.43 1.98
539 588 0.678395 CCTGAGGCGTCATGCTATCT 59.322 55.000 9.94 0.00 45.43 1.98
542 591 2.501128 GCCTGAGGCGTCATGCTA 59.499 61.111 23.80 0.00 45.43 3.49
552 601 2.136878 ATGACGCCCTAGCCTGAGG 61.137 63.158 0.00 0.00 36.23 3.86
553 602 1.068753 CATGACGCCCTAGCCTGAG 59.931 63.158 0.00 0.00 34.57 3.35
554 603 3.094062 GCATGACGCCCTAGCCTGA 62.094 63.158 0.00 0.00 34.57 3.86
555 604 1.748329 TAGCATGACGCCCTAGCCTG 61.748 60.000 0.00 0.00 44.04 4.85
556 605 0.833834 ATAGCATGACGCCCTAGCCT 60.834 55.000 0.00 0.00 44.04 4.58
557 606 0.895530 TATAGCATGACGCCCTAGCC 59.104 55.000 0.00 0.00 44.04 3.93
558 607 2.544685 CATATAGCATGACGCCCTAGC 58.455 52.381 0.00 0.00 44.04 3.42
560 609 1.207089 GCCATATAGCATGACGCCCTA 59.793 52.381 0.00 0.00 44.04 3.53
561 610 0.036010 GCCATATAGCATGACGCCCT 60.036 55.000 0.00 0.00 44.04 5.19
562 611 0.321564 TGCCATATAGCATGACGCCC 60.322 55.000 0.00 0.00 44.04 6.13
563 612 3.231734 TGCCATATAGCATGACGCC 57.768 52.632 0.00 0.00 44.04 5.68
595 644 2.879233 ATGTAGTATGGCGCCCCGG 61.879 63.158 26.77 0.00 0.00 5.73
596 645 1.667830 CATGTAGTATGGCGCCCCG 60.668 63.158 26.77 0.00 0.00 5.73
597 646 0.602905 GACATGTAGTATGGCGCCCC 60.603 60.000 26.77 12.19 0.00 5.80
599 648 2.517598 CGACATGTAGTATGGCGCC 58.482 57.895 22.73 22.73 43.99 6.53
602 651 5.348724 CCATGATAACGACATGTAGTATGGC 59.651 44.000 19.37 8.94 42.16 4.40
603 652 6.366061 CACCATGATAACGACATGTAGTATGG 59.634 42.308 25.20 25.20 42.16 2.74
604 653 6.128822 GCACCATGATAACGACATGTAGTATG 60.129 42.308 12.25 11.39 42.16 2.39
608 1036 3.494626 GGCACCATGATAACGACATGTAG 59.505 47.826 0.00 0.00 42.16 2.74
610 1038 2.288666 GGCACCATGATAACGACATGT 58.711 47.619 0.00 0.00 42.16 3.21
636 1064 4.899239 GAGAGCATGACGCCCCGG 62.899 72.222 0.00 0.00 44.04 5.73
637 1065 3.842923 AGAGAGCATGACGCCCCG 61.843 66.667 0.00 0.00 44.04 5.73
638 1066 2.202987 CAGAGAGCATGACGCCCC 60.203 66.667 0.00 0.00 44.04 5.80
639 1067 2.202987 CCAGAGAGCATGACGCCC 60.203 66.667 0.00 0.00 44.04 6.13
640 1068 2.894387 GCCAGAGAGCATGACGCC 60.894 66.667 0.00 0.00 44.04 5.68
641 1069 2.125391 TGCCAGAGAGCATGACGC 60.125 61.111 0.00 0.00 38.00 5.19
665 1093 3.227276 ATGACGCTCGGGGCTAGG 61.227 66.667 0.00 0.00 39.13 3.02
666 1094 1.452953 TACATGACGCTCGGGGCTAG 61.453 60.000 0.00 0.00 39.13 3.42
667 1095 1.038681 TTACATGACGCTCGGGGCTA 61.039 55.000 0.00 0.00 39.13 3.93
668 1096 1.895020 TTTACATGACGCTCGGGGCT 61.895 55.000 0.00 0.00 39.13 5.19
669 1097 1.022451 TTTTACATGACGCTCGGGGC 61.022 55.000 0.00 0.00 37.64 5.80
670 1098 1.006832 CTTTTACATGACGCTCGGGG 58.993 55.000 0.00 0.00 0.00 5.73
673 1101 1.927174 CCCTCTTTTACATGACGCTCG 59.073 52.381 0.00 0.00 0.00 5.03
674 1102 1.666189 GCCCTCTTTTACATGACGCTC 59.334 52.381 0.00 0.00 0.00 5.03
675 1103 1.679032 GGCCCTCTTTTACATGACGCT 60.679 52.381 0.00 0.00 0.00 5.07
676 1104 0.733150 GGCCCTCTTTTACATGACGC 59.267 55.000 0.00 0.00 0.00 5.19
677 1105 2.107950 TGGCCCTCTTTTACATGACG 57.892 50.000 0.00 0.00 0.00 4.35
678 1106 5.405935 AAAATGGCCCTCTTTTACATGAC 57.594 39.130 0.00 0.00 0.00 3.06
680 1108 9.883142 TTTTATAAAATGGCCCTCTTTTACATG 57.117 29.630 6.54 0.00 31.62 3.21
709 1137 8.934023 ACACAAAATAACCTCAATCTAGGAAA 57.066 30.769 0.00 0.00 39.15 3.13
710 1138 8.792633 CAACACAAAATAACCTCAATCTAGGAA 58.207 33.333 0.00 0.00 39.15 3.36
711 1139 8.160765 TCAACACAAAATAACCTCAATCTAGGA 58.839 33.333 0.00 0.00 39.15 2.94
712 1140 8.335532 TCAACACAAAATAACCTCAATCTAGG 57.664 34.615 0.00 0.00 42.82 3.02
713 1141 9.831737 CTTCAACACAAAATAACCTCAATCTAG 57.168 33.333 0.00 0.00 0.00 2.43
714 1142 9.349713 ACTTCAACACAAAATAACCTCAATCTA 57.650 29.630 0.00 0.00 0.00 1.98
716 1144 8.871686 AACTTCAACACAAAATAACCTCAATC 57.128 30.769 0.00 0.00 0.00 2.67
719 1147 9.796120 CTAAAACTTCAACACAAAATAACCTCA 57.204 29.630 0.00 0.00 0.00 3.86
727 1155 7.923878 GCCCTTATCTAAAACTTCAACACAAAA 59.076 33.333 0.00 0.00 0.00 2.44
730 1158 5.475564 GGCCCTTATCTAAAACTTCAACACA 59.524 40.000 0.00 0.00 0.00 3.72
731 1159 5.475564 TGGCCCTTATCTAAAACTTCAACAC 59.524 40.000 0.00 0.00 0.00 3.32
733 1161 5.944007 TCTGGCCCTTATCTAAAACTTCAAC 59.056 40.000 0.00 0.00 0.00 3.18
734 1162 6.134535 TCTGGCCCTTATCTAAAACTTCAA 57.865 37.500 0.00 0.00 0.00 2.69
735 1163 5.772393 TCTGGCCCTTATCTAAAACTTCA 57.228 39.130 0.00 0.00 0.00 3.02
736 1164 7.646548 AAATCTGGCCCTTATCTAAAACTTC 57.353 36.000 0.00 0.00 0.00 3.01
737 1165 9.715119 AATAAATCTGGCCCTTATCTAAAACTT 57.285 29.630 0.00 0.00 0.00 2.66
738 1166 9.355916 GAATAAATCTGGCCCTTATCTAAAACT 57.644 33.333 0.00 0.00 0.00 2.66
739 1167 9.131791 TGAATAAATCTGGCCCTTATCTAAAAC 57.868 33.333 0.00 0.00 0.00 2.43
740 1168 9.881773 ATGAATAAATCTGGCCCTTATCTAAAA 57.118 29.630 0.00 0.00 0.00 1.52
741 1169 9.881773 AATGAATAAATCTGGCCCTTATCTAAA 57.118 29.630 0.00 0.00 0.00 1.85
742 1170 9.881773 AAATGAATAAATCTGGCCCTTATCTAA 57.118 29.630 0.00 0.00 0.00 2.10
743 1171 9.881773 AAAATGAATAAATCTGGCCCTTATCTA 57.118 29.630 0.00 0.00 0.00 1.98
744 1172 8.788238 AAAATGAATAAATCTGGCCCTTATCT 57.212 30.769 0.00 0.00 0.00 1.98
745 1173 8.641541 TGAAAATGAATAAATCTGGCCCTTATC 58.358 33.333 0.00 0.00 0.00 1.75
746 1174 8.424133 GTGAAAATGAATAAATCTGGCCCTTAT 58.576 33.333 0.00 0.00 0.00 1.73
747 1175 7.147742 GGTGAAAATGAATAAATCTGGCCCTTA 60.148 37.037 0.00 0.00 0.00 2.69
748 1176 6.352137 GGTGAAAATGAATAAATCTGGCCCTT 60.352 38.462 0.00 0.00 0.00 3.95
749 1177 5.129320 GGTGAAAATGAATAAATCTGGCCCT 59.871 40.000 0.00 0.00 0.00 5.19
750 1178 5.129320 AGGTGAAAATGAATAAATCTGGCCC 59.871 40.000 0.00 0.00 0.00 5.80
751 1179 6.225981 AGGTGAAAATGAATAAATCTGGCC 57.774 37.500 0.00 0.00 0.00 5.36
752 1180 9.822185 AAATAGGTGAAAATGAATAAATCTGGC 57.178 29.630 0.00 0.00 0.00 4.85
760 1188 9.632807 CCGTTTCAAAATAGGTGAAAATGAATA 57.367 29.630 1.42 0.00 44.35 1.75
761 1189 8.364142 TCCGTTTCAAAATAGGTGAAAATGAAT 58.636 29.630 1.42 0.00 44.35 2.57
762 1190 7.717568 TCCGTTTCAAAATAGGTGAAAATGAA 58.282 30.769 1.42 0.00 44.35 2.57
763 1191 7.278461 TCCGTTTCAAAATAGGTGAAAATGA 57.722 32.000 1.42 0.00 44.35 2.57
764 1192 6.586082 CCTCCGTTTCAAAATAGGTGAAAATG 59.414 38.462 1.42 0.00 44.35 2.32
765 1193 6.295067 CCCTCCGTTTCAAAATAGGTGAAAAT 60.295 38.462 1.42 0.00 44.35 1.82
766 1194 5.010213 CCCTCCGTTTCAAAATAGGTGAAAA 59.990 40.000 1.42 0.00 44.35 2.29
767 1195 4.521256 CCCTCCGTTTCAAAATAGGTGAAA 59.479 41.667 0.00 0.00 41.50 2.69
768 1196 4.076394 CCCTCCGTTTCAAAATAGGTGAA 58.924 43.478 0.00 0.00 33.21 3.18
769 1197 3.328343 TCCCTCCGTTTCAAAATAGGTGA 59.672 43.478 0.00 0.00 0.00 4.02
770 1198 3.681593 TCCCTCCGTTTCAAAATAGGTG 58.318 45.455 0.00 0.17 0.00 4.00
771 1199 3.329814 ACTCCCTCCGTTTCAAAATAGGT 59.670 43.478 0.00 0.00 0.00 3.08
772 1200 3.951663 ACTCCCTCCGTTTCAAAATAGG 58.048 45.455 0.00 0.00 0.00 2.57
773 1201 5.811100 GTCTACTCCCTCCGTTTCAAAATAG 59.189 44.000 0.00 0.00 0.00 1.73
774 1202 5.622914 CGTCTACTCCCTCCGTTTCAAAATA 60.623 44.000 0.00 0.00 0.00 1.40
775 1203 4.576879 GTCTACTCCCTCCGTTTCAAAAT 58.423 43.478 0.00 0.00 0.00 1.82
776 1204 3.553508 CGTCTACTCCCTCCGTTTCAAAA 60.554 47.826 0.00 0.00 0.00 2.44
777 1205 2.029649 CGTCTACTCCCTCCGTTTCAAA 60.030 50.000 0.00 0.00 0.00 2.69
778 1206 1.542915 CGTCTACTCCCTCCGTTTCAA 59.457 52.381 0.00 0.00 0.00 2.69
779 1207 1.171308 CGTCTACTCCCTCCGTTTCA 58.829 55.000 0.00 0.00 0.00 2.69
780 1208 0.455005 CCGTCTACTCCCTCCGTTTC 59.545 60.000 0.00 0.00 0.00 2.78
781 1209 0.969409 CCCGTCTACTCCCTCCGTTT 60.969 60.000 0.00 0.00 0.00 3.60
782 1210 1.379576 CCCGTCTACTCCCTCCGTT 60.380 63.158 0.00 0.00 0.00 4.44
783 1211 2.268167 CTCCCGTCTACTCCCTCCGT 62.268 65.000 0.00 0.00 0.00 4.69
784 1212 1.526455 CTCCCGTCTACTCCCTCCG 60.526 68.421 0.00 0.00 0.00 4.63
785 1213 1.829096 GCTCCCGTCTACTCCCTCC 60.829 68.421 0.00 0.00 0.00 4.30
786 1214 1.104577 CAGCTCCCGTCTACTCCCTC 61.105 65.000 0.00 0.00 0.00 4.30
787 1215 1.076632 CAGCTCCCGTCTACTCCCT 60.077 63.158 0.00 0.00 0.00 4.20
788 1216 2.787567 GCAGCTCCCGTCTACTCCC 61.788 68.421 0.00 0.00 0.00 4.30
789 1217 1.395826 ATGCAGCTCCCGTCTACTCC 61.396 60.000 0.00 0.00 0.00 3.85
790 1218 0.249238 CATGCAGCTCCCGTCTACTC 60.249 60.000 0.00 0.00 0.00 2.59
791 1219 1.819229 CATGCAGCTCCCGTCTACT 59.181 57.895 0.00 0.00 0.00 2.57
792 1220 1.884926 GCATGCAGCTCCCGTCTAC 60.885 63.158 14.21 0.00 41.15 2.59
793 1221 2.501128 GCATGCAGCTCCCGTCTA 59.499 61.111 14.21 0.00 41.15 2.59
794 1222 4.479993 GGCATGCAGCTCCCGTCT 62.480 66.667 21.36 0.00 44.79 4.18
795 1223 4.783621 TGGCATGCAGCTCCCGTC 62.784 66.667 21.36 0.00 44.79 4.79
796 1224 3.866379 TTTGGCATGCAGCTCCCGT 62.866 57.895 21.36 0.00 44.79 5.28
797 1225 3.063704 TTTGGCATGCAGCTCCCG 61.064 61.111 21.36 0.00 44.79 5.14
798 1226 1.818959 TTGTTTGGCATGCAGCTCCC 61.819 55.000 21.36 0.64 44.79 4.30
799 1227 0.033781 TTTGTTTGGCATGCAGCTCC 59.966 50.000 21.36 1.47 44.79 4.70
800 1228 1.425412 CTTTGTTTGGCATGCAGCTC 58.575 50.000 21.36 7.58 44.79 4.09
801 1229 0.034337 CCTTTGTTTGGCATGCAGCT 59.966 50.000 21.36 0.00 44.79 4.24
802 1230 0.033781 TCCTTTGTTTGGCATGCAGC 59.966 50.000 21.36 3.15 44.65 5.25
803 1231 2.529780 TTCCTTTGTTTGGCATGCAG 57.470 45.000 21.36 5.97 0.00 4.41
804 1232 3.139850 CAATTCCTTTGTTTGGCATGCA 58.860 40.909 21.36 2.54 0.00 3.96
805 1233 3.401182 TCAATTCCTTTGTTTGGCATGC 58.599 40.909 9.90 9.90 36.65 4.06
806 1234 4.634199 ACTCAATTCCTTTGTTTGGCATG 58.366 39.130 0.00 0.00 36.65 4.06
807 1235 4.961438 ACTCAATTCCTTTGTTTGGCAT 57.039 36.364 0.00 0.00 36.65 4.40
808 1236 4.751767 AACTCAATTCCTTTGTTTGGCA 57.248 36.364 0.00 0.00 36.65 4.92
809 1237 6.536941 TGTAAAACTCAATTCCTTTGTTTGGC 59.463 34.615 0.00 0.00 36.65 4.52
810 1238 7.547370 TGTGTAAAACTCAATTCCTTTGTTTGG 59.453 33.333 0.00 0.00 36.65 3.28
811 1239 8.472683 TGTGTAAAACTCAATTCCTTTGTTTG 57.527 30.769 0.00 0.00 36.65 2.93
812 1240 9.097257 CATGTGTAAAACTCAATTCCTTTGTTT 57.903 29.630 0.00 0.00 36.65 2.83
813 1241 8.474025 TCATGTGTAAAACTCAATTCCTTTGTT 58.526 29.630 0.00 0.00 36.65 2.83
814 1242 8.006298 TCATGTGTAAAACTCAATTCCTTTGT 57.994 30.769 0.00 0.00 36.65 2.83
834 1262 9.559732 TCAAAAAGATACGGATATTCATCATGT 57.440 29.630 0.00 0.00 32.32 3.21
942 1372 1.373812 TGGGACACGAGACGAGAGA 59.626 57.895 0.00 0.00 0.00 3.10
1050 1483 4.554363 CGTACGGCGAGCAGGAGG 62.554 72.222 16.62 0.00 44.77 4.30
1484 1917 0.898789 GGAACCAGGTGAGGACGAGA 60.899 60.000 0.00 0.00 0.00 4.04
1584 2040 6.947258 TGACGCATCATTGTAGATTGTATTG 58.053 36.000 0.00 0.00 0.00 1.90
1590 2046 4.122776 GGTCTGACGCATCATTGTAGATT 58.877 43.478 1.07 0.00 33.22 2.40
1591 2047 3.132824 TGGTCTGACGCATCATTGTAGAT 59.867 43.478 1.07 0.00 33.22 1.98
1592 2048 2.495669 TGGTCTGACGCATCATTGTAGA 59.504 45.455 1.07 0.00 33.22 2.59
1593 2049 2.892374 TGGTCTGACGCATCATTGTAG 58.108 47.619 1.07 0.00 33.22 2.74
1594 2050 3.326836 TTGGTCTGACGCATCATTGTA 57.673 42.857 1.07 0.00 33.22 2.41
1595 2051 2.183478 TTGGTCTGACGCATCATTGT 57.817 45.000 1.07 0.00 33.22 2.71
1646 2107 4.415735 GCTAGCAACTGAAAAATGGCTAC 58.584 43.478 10.63 0.00 33.10 3.58
1652 2113 4.755123 AGTACACGCTAGCAACTGAAAAAT 59.245 37.500 16.45 0.00 0.00 1.82
1690 2151 5.571784 TCTCTGAATCATCCAATGCAAAC 57.428 39.130 0.00 0.00 0.00 2.93
1691 2152 5.392272 CGTTCTCTGAATCATCCAATGCAAA 60.392 40.000 0.00 0.00 0.00 3.68
1698 2159 3.384789 CCCTACGTTCTCTGAATCATCCA 59.615 47.826 0.00 0.00 0.00 3.41
1725 2186 2.086610 AGGTGCCAGTGACCAATTTT 57.913 45.000 3.98 0.00 35.76 1.82
1790 2259 1.872679 CGCGCCTCCTTACGACTTC 60.873 63.158 0.00 0.00 0.00 3.01
1838 2307 3.649073 TGTACATCTGTTCCGTGAAGTG 58.351 45.455 0.00 0.00 0.00 3.16
1839 2308 3.321111 ACTGTACATCTGTTCCGTGAAGT 59.679 43.478 0.00 0.00 0.00 3.01
1840 2309 3.914312 ACTGTACATCTGTTCCGTGAAG 58.086 45.455 0.00 0.00 0.00 3.02
1841 2310 4.330944 AACTGTACATCTGTTCCGTGAA 57.669 40.909 0.00 0.00 33.98 3.18
1842 2311 4.055360 CAAACTGTACATCTGTTCCGTGA 58.945 43.478 0.00 0.00 37.25 4.35
1854 2323 3.958018 AGTCACCAAACCAAACTGTACA 58.042 40.909 0.00 0.00 0.00 2.90
2065 2534 4.363990 AGCTCGTCAGGGTGCACG 62.364 66.667 11.45 0.00 37.36 5.34
2139 2614 1.518133 GTCTAGCGAGCACCAGCAG 60.518 63.158 0.00 0.00 45.49 4.24
2142 2617 0.528017 TGAAGTCTAGCGAGCACCAG 59.472 55.000 0.00 0.00 0.00 4.00
2145 2620 0.926846 GCATGAAGTCTAGCGAGCAC 59.073 55.000 0.00 0.00 0.00 4.40
2159 2634 2.629137 AGCACTCCACAAAATTGCATGA 59.371 40.909 0.00 0.00 35.57 3.07
2161 2636 2.895404 AGAGCACTCCACAAAATTGCAT 59.105 40.909 0.00 0.00 35.57 3.96
2171 2686 2.028112 TGATGGTTACAGAGCACTCCAC 60.028 50.000 0.00 0.00 38.83 4.02
2182 2697 5.942826 TGACAGTATGCATTTGATGGTTACA 59.057 36.000 3.54 0.00 42.53 2.41
2183 2698 6.435430 TGACAGTATGCATTTGATGGTTAC 57.565 37.500 3.54 0.00 42.53 2.50
2197 2712 2.219445 CGACATGCCGAATGACAGTATG 59.781 50.000 0.00 0.00 40.32 2.39
2198 2713 2.100749 TCGACATGCCGAATGACAGTAT 59.899 45.455 0.10 0.00 38.72 2.12
2250 2765 7.660030 TCCTCTACATACACATTCATCAGAA 57.340 36.000 0.00 0.00 38.31 3.02
2251 2766 7.417911 GGTTCCTCTACATACACATTCATCAGA 60.418 40.741 0.00 0.00 0.00 3.27
2252 2767 6.703607 GGTTCCTCTACATACACATTCATCAG 59.296 42.308 0.00 0.00 0.00 2.90
2253 2768 6.156083 TGGTTCCTCTACATACACATTCATCA 59.844 38.462 0.00 0.00 0.00 3.07
2254 2769 6.582636 TGGTTCCTCTACATACACATTCATC 58.417 40.000 0.00 0.00 0.00 2.92
2255 2770 6.560003 TGGTTCCTCTACATACACATTCAT 57.440 37.500 0.00 0.00 0.00 2.57
2281 2796 6.389830 AAACATGTCATTACAGTCAAGCAA 57.610 33.333 0.00 0.00 39.49 3.91
2301 2816 9.827411 GTGAGAAACTTATCAGATACCAAAAAC 57.173 33.333 0.00 0.00 0.00 2.43
2364 2881 4.578871 TCCCTTGTTATGTGTGAGACATG 58.421 43.478 5.38 0.00 45.43 3.21
2367 2884 6.575162 ATTTTCCCTTGTTATGTGTGAGAC 57.425 37.500 0.00 0.00 0.00 3.36
2371 2888 9.487790 AATGTTTATTTTCCCTTGTTATGTGTG 57.512 29.630 0.00 0.00 0.00 3.82
2401 2929 6.509418 TTTAGAAGCCAAAGCGATATGTTT 57.491 33.333 0.00 0.00 46.67 2.83
2406 2934 6.597672 TCAAAGATTTAGAAGCCAAAGCGATA 59.402 34.615 0.00 0.00 46.67 2.92
2428 2957 5.880332 GGCTGTAGTTAACATCAATCCTCAA 59.120 40.000 8.61 0.00 37.50 3.02
2429 2958 5.428253 GGCTGTAGTTAACATCAATCCTCA 58.572 41.667 8.61 0.00 37.50 3.86
2436 2965 5.172934 CCTAAACGGCTGTAGTTAACATCA 58.827 41.667 8.61 5.56 37.50 3.07
2458 2987 4.295051 TGCTTCTTAAAACGAATTGTGCC 58.705 39.130 0.00 0.00 0.00 5.01
2461 2993 5.462068 GGCTTTGCTTCTTAAAACGAATTGT 59.538 36.000 0.00 0.00 0.00 2.71
2486 3018 0.900421 CTGACTGTGCAGATCCAGGA 59.100 55.000 6.17 0.00 38.14 3.86
2488 3020 0.036671 TGCTGACTGTGCAGATCCAG 60.037 55.000 6.17 10.31 38.14 3.86
2489 3021 0.616891 ATGCTGACTGTGCAGATCCA 59.383 50.000 6.17 0.87 44.04 3.41
2490 3022 2.609427 TATGCTGACTGTGCAGATCC 57.391 50.000 6.17 0.00 44.04 3.36
2497 3032 7.543947 TCATTGAAACTATATGCTGACTGTG 57.456 36.000 0.00 0.00 0.00 3.66
2502 3037 8.892723 ACGATTTTCATTGAAACTATATGCTGA 58.107 29.630 11.30 0.00 30.83 4.26
2525 3086 8.795842 ATTATGTGGGTGTTTTTATAAGACGA 57.204 30.769 0.00 0.00 0.00 4.20
2526 3087 9.849166 AAATTATGTGGGTGTTTTTATAAGACG 57.151 29.630 0.00 0.00 0.00 4.18
2541 3102 6.376864 TGACCTTGTCATGTAAATTATGTGGG 59.623 38.462 0.00 0.00 37.67 4.61
2550 3111 7.815840 TCAAATTCTGACCTTGTCATGTAAA 57.184 32.000 0.00 0.00 41.94 2.01
2569 3130 3.760684 GTGGCAGAGAAGAACCATCAAAT 59.239 43.478 0.00 0.00 34.04 2.32
2572 3134 1.980765 AGTGGCAGAGAAGAACCATCA 59.019 47.619 0.00 0.00 34.04 3.07
2575 3137 1.131638 ACAGTGGCAGAGAAGAACCA 58.868 50.000 0.00 0.00 0.00 3.67
2589 3151 2.065993 ACGCAGTAGCAAGTACAGTG 57.934 50.000 0.00 0.00 41.94 3.66
2607 3171 6.386842 AAGAATGCTTGGATCCATTCAGGAC 61.387 44.000 22.08 14.45 46.03 3.85
2632 3215 1.073897 ACCTCACCCTTCAAGCAGC 59.926 57.895 0.00 0.00 0.00 5.25
2638 3221 1.809133 TAACACCACCTCACCCTTCA 58.191 50.000 0.00 0.00 0.00 3.02
2639 3222 3.081804 CAATAACACCACCTCACCCTTC 58.918 50.000 0.00 0.00 0.00 3.46
2641 3224 1.354368 CCAATAACACCACCTCACCCT 59.646 52.381 0.00 0.00 0.00 4.34
2642 3225 1.834188 CCAATAACACCACCTCACCC 58.166 55.000 0.00 0.00 0.00 4.61
2643 3226 1.173913 GCCAATAACACCACCTCACC 58.826 55.000 0.00 0.00 0.00 4.02
2644 3227 1.812571 CAGCCAATAACACCACCTCAC 59.187 52.381 0.00 0.00 0.00 3.51
2645 3228 1.702401 TCAGCCAATAACACCACCTCA 59.298 47.619 0.00 0.00 0.00 3.86
2646 3229 2.489938 TCAGCCAATAACACCACCTC 57.510 50.000 0.00 0.00 0.00 3.85
2647 3230 2.795329 CTTCAGCCAATAACACCACCT 58.205 47.619 0.00 0.00 0.00 4.00
2648 3231 1.202348 GCTTCAGCCAATAACACCACC 59.798 52.381 0.00 0.00 34.31 4.61
2649 3232 1.885887 TGCTTCAGCCAATAACACCAC 59.114 47.619 0.00 0.00 41.18 4.16
2650 3233 2.284754 TGCTTCAGCCAATAACACCA 57.715 45.000 0.00 0.00 41.18 4.17
2651 3234 5.765182 AGTATATGCTTCAGCCAATAACACC 59.235 40.000 0.00 0.00 41.18 4.16
2652 3235 6.867662 AGTATATGCTTCAGCCAATAACAC 57.132 37.500 0.00 0.00 41.18 3.32
2653 3236 7.735917 ACTAGTATATGCTTCAGCCAATAACA 58.264 34.615 0.00 0.00 41.18 2.41
2654 3237 8.608844 AACTAGTATATGCTTCAGCCAATAAC 57.391 34.615 0.00 0.00 41.18 1.89
2656 3239 9.706691 GTAAACTAGTATATGCTTCAGCCAATA 57.293 33.333 0.00 0.00 41.18 1.90
2657 3240 8.210946 TGTAAACTAGTATATGCTTCAGCCAAT 58.789 33.333 0.00 0.00 41.18 3.16
2658 3241 7.561251 TGTAAACTAGTATATGCTTCAGCCAA 58.439 34.615 0.00 0.00 41.18 4.52
2659 3242 7.119709 TGTAAACTAGTATATGCTTCAGCCA 57.880 36.000 0.00 0.00 41.18 4.75
2697 3299 4.706616 ACAAGTATTTAGGAAGGGAGGGA 58.293 43.478 0.00 0.00 0.00 4.20
2726 3328 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
2728 3330 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
2729 3331 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
2730 3332 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
2733 3335 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
2777 3379 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2778 3380 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2779 3381 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2781 3383 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2783 3385 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2784 3386 3.932710 GACATACGGAGCAAAATGAGTGA 59.067 43.478 0.00 0.00 0.00 3.41
2785 3387 3.242091 CGACATACGGAGCAAAATGAGTG 60.242 47.826 0.00 0.00 38.46 3.51
2786 3388 2.930040 CGACATACGGAGCAAAATGAGT 59.070 45.455 0.00 0.00 38.46 3.41
2787 3389 3.575858 CGACATACGGAGCAAAATGAG 57.424 47.619 0.00 0.00 38.46 2.90
2800 3402 4.846137 GCATTTCAACAAGTGACGACATAC 59.154 41.667 0.00 0.00 35.39 2.39
2801 3403 4.083537 GGCATTTCAACAAGTGACGACATA 60.084 41.667 0.00 0.00 35.39 2.29
2802 3404 3.304659 GGCATTTCAACAAGTGACGACAT 60.305 43.478 0.00 0.00 35.39 3.06
2803 3405 2.032799 GGCATTTCAACAAGTGACGACA 59.967 45.455 0.00 0.00 35.39 4.35
2804 3406 2.290641 AGGCATTTCAACAAGTGACGAC 59.709 45.455 0.00 0.00 35.39 4.34
2805 3407 2.571212 AGGCATTTCAACAAGTGACGA 58.429 42.857 0.00 0.00 35.39 4.20
2806 3408 3.745975 TCTAGGCATTTCAACAAGTGACG 59.254 43.478 0.00 0.00 35.39 4.35
2807 3409 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
2808 3410 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
2809 3411 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
2810 3412 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
2811 3413 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
2812 3414 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
2813 3415 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
2814 3416 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
2815 3417 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2816 3418 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
2818 3420 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
2819 3421 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
2820 3422 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
2821 3423 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
2822 3424 8.041919 AGTTCCTAAATACTTGTCTTTCTAGGC 58.958 37.037 0.00 0.00 0.00 3.93
2823 3425 9.372369 CAGTTCCTAAATACTTGTCTTTCTAGG 57.628 37.037 0.00 0.00 0.00 3.02
2826 3428 8.097662 CCTCAGTTCCTAAATACTTGTCTTTCT 58.902 37.037 0.00 0.00 0.00 2.52
2827 3429 7.334671 CCCTCAGTTCCTAAATACTTGTCTTTC 59.665 40.741 0.00 0.00 0.00 2.62
2828 3430 7.017254 TCCCTCAGTTCCTAAATACTTGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
2829 3431 6.500751 TCCCTCAGTTCCTAAATACTTGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
2830 3432 6.023603 TCCCTCAGTTCCTAAATACTTGTCT 58.976 40.000 0.00 0.00 0.00 3.41
2831 3433 6.070710 ACTCCCTCAGTTCCTAAATACTTGTC 60.071 42.308 0.00 0.00 26.56 3.18
2832 3434 5.785940 ACTCCCTCAGTTCCTAAATACTTGT 59.214 40.000 0.00 0.00 26.56 3.16
2833 3435 6.301169 ACTCCCTCAGTTCCTAAATACTTG 57.699 41.667 0.00 0.00 26.56 3.16
2834 3436 7.844779 TCATACTCCCTCAGTTCCTAAATACTT 59.155 37.037 0.00 0.00 36.43 2.24
2835 3437 7.363031 TCATACTCCCTCAGTTCCTAAATACT 58.637 38.462 0.00 0.00 36.43 2.12
2836 3438 7.598759 TCATACTCCCTCAGTTCCTAAATAC 57.401 40.000 0.00 0.00 36.43 1.89
2844 3446 3.133721 AGTGCATCATACTCCCTCAGTTC 59.866 47.826 0.00 0.00 36.43 3.01
2848 3450 2.630098 GCTAGTGCATCATACTCCCTCA 59.370 50.000 0.00 0.00 39.41 3.86
2850 3452 2.682594 TGCTAGTGCATCATACTCCCT 58.317 47.619 0.00 0.00 45.31 4.20
2865 3467 6.204688 TCCAAGTTGTTCAGTAATGTTGCTAG 59.795 38.462 1.45 0.00 0.00 3.42
2896 3498 7.874940 TGCAGGAATTTTGCTATACATATGAC 58.125 34.615 10.38 0.00 42.02 3.06
2907 3509 4.516323 ACAAAGTTTGCAGGAATTTTGCT 58.484 34.783 15.59 4.66 38.82 3.91
2921 3523 8.664669 AACTTGAATATCCCCATACAAAGTTT 57.335 30.769 0.00 0.00 0.00 2.66
2936 3538 6.318144 CACAGAGCATTCCTGAACTTGAATAT 59.682 38.462 0.00 0.00 35.69 1.28
2937 3539 5.645067 CACAGAGCATTCCTGAACTTGAATA 59.355 40.000 0.00 0.00 35.69 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.