>input_sequence_59094
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---------------------------------------------------------------------ATGGCCTCGCC
GCACGCCGACCCGCAGCAGCA---CCACGCGTCGGCGCCGCCCCTCCTGCTCGCCGTACGCCGCATCCCGTACCCGGGGG
CCCAGCGGCCGCGCGCGCTCCCCGCCCCGGACCTCGCCCCTCTCGCGCGCCGCCTCGACGAGCTCACCGCCGCGGCGGCC
GCCCACCCGCTCCTGAAGCCGCTCTTCGACCTCCGCCACCACCTCTCCACCTTCTCTCAGGTACGCAAACGTTCACGCCC
TAGTGGAGCTTCGTGAAAACGCGCGCCGGCGATCTTCCGAACTGACGCCGTAGGCCCGGCCGATGCGAGGAGCAGAGCAG
GAGGCAGAGGATGGTGGCGATGCGGCAGGCGGCGTGCCCGCTGGCCGGCGGCGAGGGCTGCTTCGCGGCGGTGCTGGGCG
GGTCCGTGGCCGGCATGGTGGTGTCCAACGGCGTCAACAGCTTCCTCAGCCTCTACAACACCGTGCTCGTCATCCGTCTC
GTCCTCACCTGGTTCCCCAACACGCCGCCCGCCATCGTCTCGCCCCTCAGGT--------------A------CACATTG
CAAACTGTAAGACGCAACGCACTATCC---CAGCAGTAGCAATACAATCTACAATGATGCGTCAGACCAATCGAACGACA
CAAGAAAACCACCA-----CATTTCCGTAGCCATTTTTCAGTTGCTAGCGTGTACTCTACTGGTAGTGCTGTTTGCATTG
GATGATTCAGAGAACGTAGGGAATTAAAATTGGTCACTGGCACCTAC---CACTAAGACGCAATGATCGCAATCACTATC
ATAATCTTG-----GTTAGAAGTCGTAAGGAGGCGCGACAGTGCAAAAGCAGAAAGGCTTTTGCTTCACTTCACGGAACA
GATGTACAGTTTGGTTTGGTGACTTTCTGAAGATGTTGTTGTGGCGTGCAGCACGGTGTGTGACCCGTACCTGAACATCT
TCCGGGGCATCATCCCGCCGCTGGGAGGGCTGGACCTGTCCCCCATCCTCGCCTTCCTGGTGCTCAACGCCCTCACCGGC
ACCGCCGCCGCGCTCCCGGCCGAGCTCCCCGCCCAGAACGCCGCGTCCGGCTCCGTGCACCCTGACGAGCTCACCGCCAA
CCAGAGGAAATGGATGCGGAGATTCCGCCCGGGGAAATCGCA------AGAGGCTGCTGGTGCTCGCTAG----------
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>chr4B_1_TraesCS4B01G293700
CGGTAAAAAAAAAAGGTCATCGGGAAGCTCAAACCGCACCCCGCGC-CTACATCCAACTCAATCAAACCTGTAAGCGACC
ACCTCACTCATTG--------------------------------------------CTCCCAAGGACGTGCAATTACGG
AGGTGCAATGTTGCGTCCTTGTTTGAGTTTTTCTCTTTGCGGTGTTCCAAGTTCCAAGTTCATTGATTTTTTATTTTTGC
AAATAAAGTTTATTTT---AAAATTGTTAATCCGATACAACTTCAGTTATTTTACTATACTAGTTTATGTAGTCCAATGA
TTCCTCAACTTCGTCTGTTCTCTACTCCGTCTTTTGCTCTAAATAAAAATGATGCATGATACCTGTTACTTCATCCGTTT
TAAAATAGATAACTCAATTTTATATTAAGTTTAGTACAAAGTTAGTATAAAGTTGGGTCATCTATTTTGGATGAAAATGG
ACAAAACTGGTCCTTATCTGAATCTTCAACACAAAATGGCCCCAATCTGGAAAAAAAATCACGAAATGGCCCCTTTTGCA
TGACGCCCGAGACTAGGGCGCCATGCTAGATAGCATGACGCCTCAGGCTAGGGCGTCATGCTATATGGCATTGGTGCCCT
ACGCCGGGGCGCC-------------------------------------------------------------------
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------------------------------------------------------------------------ATACTACA
TGTCGTTATCATGGTGCCCTTGCCCGGGGCGTCATGCTCTCTGGCATGGCGCCCTAGCCCCGAGCGTCATGTAAAAGAGG
GCCATTTTATAAAATATTTCCTAGATTGAGGTTATTTTGTGTTGAAGTTTTAGATAAGGGCCAGATTTATTCATTTTCAC
CTATTTTGAAACGGAGGGAGTAGACGGGAGCTGCATGCCAAACAAAGGAATTGAGTTTTACACATGATGAATATCCGTAT
CTTTTTGAGGATTTCTGGCAAATTTCGTAATGCCACAAGGGCCAAACCGCAAAAGTTCT--AATATCTCGCGCTTCGAAC
GTTATCTCCAATCTCTCGTCTCGTGTCCCATCCACGTCTCTCCGGCGTGCCCGCTCCAACTCTCATCCAATGGCCTCGCC
GCACGCCGACCCGCAGCAGCA---CCACGCGTCGGCGCCGCCCCTCCTGCTCGCCGTACGCCGCATCCCGTACCCGGGGG
CCCAGCGGCCGCGCGCGCTCCCCGCCCCGGACCTCGCCCCTCTCGCGCGCCGCCTCGACGAGCTCACCGCCGCGGCGGCC
GCCCACCCGCTCCTGAAGCCGCTCTTCGACCTCCGCCACCACCTCTCCACCTTCTCTCAGGTACGCAAACGTTCACGCCC
TAGTGGAGCTTCGTGAAAACGCGCGCCGGCGATCTTCCGAACTGACGCCGTAGGCCCGGCCGATGCGAGGAGCAGAGCAG
GAGGCAGAGGATGGTGGCGATGCGGCAGGCGGCGTGCCCGCTGGCCGGCGGCGAGGGCTGCTTCGCGGCGGTGCTGGGCG
GGTCCGTGGCCGGCATGGTGGTGTCCAACGGCGTCAACAGCTTCCTCAGCCTCTACAACACCGTGCTCGTCATCCGTCTC
GTCCTCACCTGGTTCCCCAACACGCCGCCCGCCATCGTCTCGCCCCTCAGGT--------------A------CACATTG
CAAACTGTAAGACGCAACGCACTATCC---CAGCAGTAGCAATACAATCTACAATGATGCGTCAGACCAATCGAACGACA
CAAGAAAACCACCA-----CATTTCCGTAGCCATTTTTCAGTTGCTAGCGTGTACTCTACTGGTAGTGCTGTTTGCATTG
GATGATTCAGAGAACGTAGGGAATTAAAATTGGTCACTGGCACCTAC---CACTAAGACGCAATGATCGCAATCACTATC
ATAATCTTG-----GTTAGAAGTCGTAAGGAGGCGCGACAGTGCAAAAGCAGAAAGGCTTTTGCTTCACTTCACGGAACA
GATGTACAGTTTGGTTTGGTGACTTTCTGAAGATGTTGTTGTGGCGTGCAGCACGGTGTGTGACCCGTACCTGAACATCT
TCCGGGGCATCATCCCGCCGCTGGGAGGGCTGGACCTGTCCCCCATCCTCGCCTTCCTGGTGCTCAACGCCCTCACCGGC
ACCGCCGCCGCGCTCCCGGCCGAGCTCCCCGCCCAGAACGCCGCGTCCGGCTCCGTGCACCCTGACGAGCTCACCGCCAA
CCAGAGGAAATGGATGCGGAGATTCCGCCCGGGGAAATCGCA------AGAGGCTGCTGGTGCTCGCTAGACTTCATGCA
ATTTT----------------------------------------GTGGAGTGCTCTGTAACCATCAAATGCATACTGTC
ATTCGGCATGTCGAATTACCACTGAGGCCTGTTTTTTCTTCTTCTTCTGATGAATGTGTATGTAGAGGAACCAAATTGCT
TGACTGTAATGACATGTTTTTGGTATCTGATA--AGTTTCTCACTTTGTTGATTGCTTGAGGAAATGAAACAAAAAACCC
CATGTCTCACACA------TAACAAGGGAAAAT-----AAACATTAAGAAACATATCGCTTT-GGCTTCTAAATCTTTGA
GGATTGATGTTAACTACAGCCGTTTAG---GCACAATTCGTTTTAAGAAGCAAAGCCTCCTGG---ATCTGCACAGTCAG
CATATAGTT----------TCAATGA----------------AAATCGTCTTATAAAAACACCCACATAATTTACATGAC
AAGGTCAGAA-TTTGATGGTTCTTCTCTGCCACTGTACTTGC--TACTGCGTCCTGAATGGATCCA--------------
-----AGCATTCTTGCTGCTTGAAGGGTGAGGTGGTGTTATTGGCTGAAGCATATACTAG-------------------T
TTACAACATATAATGTACTCCCTCCCTTCCTAAATACTTGTTTTTCTAGACATTTCAAATGACTACTACATACGGATGTA
TGTAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTCGTCACTTGTTGAAATGCCTAGAAAGACAAGTA
TTTAGGAACTGAGGGAGTATGATGCACTAGCAACATTACTGAACAACTTGGAGCATTGTCATATGTATAGCAAAATTCCT
GCAAACTTTGTATGGGGATATTCAAGTTCAGGAATGCTCTGTGGTACTCTGGATTCAGGACGGAGCTGACCATTTGAACT
ACTGATCATGCTGGTTTGGGGACTTTTGAGAGGCAAGCAAGAAGTCCAAGACGACCTCGTTGAACCGATTCGGGTCCTCC
ATCTGCGGCACATGCCCGGTTTCCTTGAAGATTTCCAACCTCACATTCTCTCCTAAGCACCTGAAACCATCATAAGC
>chr4D_9
--------AAAAAAGGGCGTTGGGGAGCTCAAACTGCACCCCCGCATCTACATCCAACTCAATCAAACCTGTAAGCGACC
ATCTCACTCATGTTTTGAATGGGAAAGTATTTTATAAGTATATATCAGTGCTCCCAACTCCCAAGGATGTGCAACTACAC
AGGTGCAGTGTTACGTGCTTGTTTGAGTTTTTCTTTGCAGT---------GTTGCAAGTCCATTGTTTTTATTTTTTTGC
AAAATAAGTTCATTTAAAAAACATTGGTAATCCGATACAACATTTTG-------------TAGTTTATGTAGTCTAATGA
AGACAAGTGAGTTCC-----------------------------------------------------------------
---------------------------------------------------GTTGGCTAAACCCTTTAGCTGCAAAAAAG
AAAAAAGTCGCGTGGTGGCAAAGAAGATAGTTCGTGTGAGGGGAAGAAATATTGACTCCAGAACGAACAGCGCCGACAAT
GGTTGCCCTAGCGATTAATTATGTGCGCGAAGCAAAAACTAAATCTACACCCAAGATCAACAGGTGGCCGACGTTCCTAG
CAGGACGACTTGTCCTTAATGTCGATGCTTCATTCACAGAGGGCGATTATGCATGGTCTTGTGATGCTGTCATCCGTGAT
CACCGGGGATCTTTCATGTCGACGTCCATGACGAGATTAGAACATGTAGCTGATGTGTTCACGGCAGAAGCGGCAGCTCT
GCTTGAAGGACTGAAGCTAGCAAGAGATACGGGATGCAATAACTTGGTGGTGAGATCGGATAATATCACGGTGGTGATGT
ACTTAGATTCAATGAAGGTTATTCTATGGTGGCAGCGCCGGTTCTTTACGAATGTCGTAGTTATCTAGTAGATTTCGGGA
GGATTATTATTGAGCATTGTATTAGAGAGTCAAATTATGTAGCTCATAAGCTGGCTAGATGGAGACGTACTAATAATCCA
TCTCGTTGGATTGATGCCCCGCCTGATTTTATTGTGAGTCTGCTGGCAGACGATATATCCATCCTTTGATTAATAAAGTA
AGCTTTCCCCCTAAAAAAAGAAAAAAGTCGCAAAATTAATAG--------------------------------------
------------------------------------------CAAAGGAATTGAGTTTTACGCATGATGAATATCCGCAT
CATTCTGAGGATCTCTAGCAAATTTGATAATGCCACAAGGGCCAAACCGCAAAAGTTCTCTAATATCTCGCGCTTCGAAC
GTTATCTCCAACCTCTCGTCTTGTGTCCCATCCACGTCTCTCCGGCGTGCCCGCTCCAACTCTCATCCAATGGCCTCGCC
GCACGCCGACCCGCAGCAGCAGCACCACGCGTCGGCGACACCACTCCTGCTCGCCGTACGCCACATCCCGTTCCCCGGGG
CCCAGCGCCCCCGCGCGCTCCCCGCCCCGGACCTCGCCCCTCTCGCGCGCCGCCTCGACGAGCTCGCCGCGGCGGCGGCC
GCACACCCGCTCCTGAAGCCGCTCTTCGACCTCCGCCACCACCTCTCAACCTTCTCCCAGGTACGAAAACATTCACGCCC
TAGTGGAGCTTCGTGAAAACGCGCGCCGGCGATCTTCTGAACTGACGCCGTAGGCCCGGCCGATGTGAGGAGCAGAGCAG
GAGGCAGAGGATGGTGGCGATGCGGCAGGCGGCGTGCCCGCTGGCCGGCGGCGAGGGCTGCTTCGCGGCGGTGCTGGGCG
GGTCCGTGGCCGGCATGGTGGTGTCCAACGGCGTCAACAGCTTCCTCAGCCTCTACAACACCGTGCTCGTCATCCGGCTC
GTCCTCACCTGGTTCCCCAACACGCCGCCCGCCATCGTCTCGCCCCTCAGGTGCGCACACAGCCACA------CACATTG
CAAACTGTAAGACGCAACGCACTATCC---CAGCAGTAGTAATACTG----CAATGATGCGTCAGACCAATCGAACGACA
CAAGAAAACCACCACATTCCATTTCCATAGCCTTTTTTCAGTTGCTAGCGTGTACTCTACTGGTAGTGCTCCTTGCATCG
GATGATTCAGAGAACGTAGGGAATTGAAATTGGTCACTGGCACCTAC---CACTAAGACGCAGTGATCGCAATCACTATC
ATAATCTTG-----GTTAAAAGTCGTAAGGGGGCGCGACAGTGCAAAAGCAGAAAGGCTTTTGCTT-----AACGAAACG
TGCGTACAGTTTGGTTTGGCGACTTTCTGAAGATGTT-TTGTGGCGTGCAGCACGGTGTGTGACCCGTACCTGAACATCT
TCCGGGGCATCATCCCGCCGCTGGGAGGGCTGGACCTGTCCCCCATCCTCGCCTTCCTGGTGCTCAACGCCCTCACCGGC
ACCGCCGCCGCGCTCCCGGCCGAGCTCCCCTCCCAGAAGACCGCGTCCGGCTCGGTGCACCCTGACGAGCTCACCGCCAA
CCAGAGGAAATGGACGCGGAGATTCCGCCCGGGGAAATCGCAGGAGGCAGAGGATG---CTGCTCGCTAGACTGC-TGCA
ATTTTCTTACCATTTTCTTGCATCAACCGGCTGTCAAACGCAATTTTGGCGTGCTCCACAACCATCAAATGTGTACTGTC
GTTCGGCATGTCGAATTACCACTGAGGCCTGATTTTTCTTCTTC------CGAATGTGTATGTAGAGGAACCAAACTGCT
TGACTGTAATGCCATTTTTTGGGTCTTT---ATGAGTTTCTCACCTTGTTGATTGCTTGTGGAAATCAAACAAATGTCCA
TGTTTCTAGGGAGTCCACATAATATGACAAAATTGCTCAAACATTAAACAAACAGACCTCCT-GTCTTCTAAAT------
--ATGGAAGTTAACAACAACCTTTTTATGCGCGCAGTTCATTTGAACAAGCAAAGCCCCACCGAAACTTTGTTTAGACGA
AAACTCGAATGAAACTATACAACTAGCTATATGATCAACTAGAAAAGATCTTGTAAAAACATCCTCAGAAGTTACATTAC
A-GGTCAGAGTTCGATGGTTCTTCCTTTGCTACCCGGA----------------------------------ACAAGTAA
CTGCAACCACTATCCCTGCTCAAG------------------GAGTGAAGTGGTTTTCCTTTATTGGCTGAAACATAGTT
TTACAACCTATAATGTACACCCTCTGTTCCTAAATATAAGACGTTTTGGCAGTTCAATTTAAGCTGCCAAAACGTTTTAT
ACAGTTCAATTTAGGCTGCCAAAACGTCTTA-----------------------------------------------TA
TTTAGAAACAGCGTTAATACAATGCAATAGCAACAGGACAGGACTCC---------------------------------
---------------------TCAACCTCAGGAATGTTCTGTGT--------ATTCCGGAGGGAGCTGACCATATGAACT
ACTGATCATGCTGGTTTGGGGACTTTTGAGAGGCAAGCAAGAAGTCCAAGACGACCTCGTTGAACCGATCCGGGTCCTCC
ATCTGCGGCACATGCCCGGTTTCCTTGAAGATTTCCAACCTCACATTCTCTCCTAAGCACCTGAAACCATCATAAGC
>chr4A_839
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-----------------------------------------------------------------GATGAATATCCGTAT
CTTTTTGAGGATCTCTGGCGAATTTCGTAATGCGACAAGGGCCAAACCGCAAAAGTTGTTTAATATCTCGCGCTTCGAAC
GTTATCTCCAACCTCTCGTCTCGTGCCCCATCCACGTCTCTCCGACGTGCCCGCTCCAACTCTCATCCAATGGCCTCGCC
GCACGCCGACCCGCAGCAGCAGCACCACGCGTCGGCGCCGCCGCTCCTGCTCGCCGTACTCCGCGTTCCGTTCCCGGGGG
CCCAGCGCCCGCGCGCGCTCCCCGCCCCGGACCTCGCCCCTCTCGCGCGCCGCCTCGACGAGCTCGCCGCCGCGGCGGCC
GCCCACCCGCTCCTGAGGCCGCTCTTCGACCTCCGCCACCACCTCTCCACCTTCTCCCAGGTACGCAAACGTCCACGCCC
CAGTGGGGCTTCGTGAAAGCGCACGCGGGCGATCTTCCGAACTAACGTCGCGCGCCCGGCCGATGCGAGGAGCAGAGCGG
GAGGCAGAGGATGGTGGCGATGCGGCAGGCGGCGTGCCCGCTGGCCGGCGGCGAGGGCTGCTTCGCGGCGGTGCTGGGCG
GGTCCGTGGCCGGCATGGTGGTGTCCAACGGCGTCAACAGCTTCCTCAGCCTCTACAACACCGTGCTCGTCATCCGGCTC
GTGCTCACCTGGTTCCCCAACACGCCGCCCGCGATCGTCTCGCCCCTCAGGT--------------ACGCGCACACATTG
CAAACTCTAAGGCGCATTATCATCCCAGCACAGCAGTAGTACA---------AATGATGCGTCAGA--------------
-----AAACCACCA-----CTAA---------------------------------------------------------
GATGATTCAGAGAAC--------TTGAAATTGGTCACTGGCACCTACTACCACTAAGACGCAATGATCGCAATCACAATC
ATAATCTTATCTTAGTTAAAAGTCGTAAGGAGGCGCGACAGTGCGAAAGCAGAAAGGCTTTTGCTT-----CACGGAACA
GACGCACAGTTTGGTCTGGTGACTTTCTGAAGATGTTGTTATCGCGTGCAGCACGGTGTGTGATCCGTACCTGAACATCT
TCCGGGGCATCATCCCGCCGCTGGGCGGGCTGGACCTGTCCCCCATCCTCGCCTTCCTGGTGCTCAACGCCCTCACCGGC
ACCGCCGCCGCGCTCCCGGCCGAGCTCCCTGCCCAAA---------CCGGCTCGGTGCGCCCTGACGAGCTCACCGCCAA
CCAGAGGAAGTGGATGAGGAGATTCCGCCCGGGGAAATCGCAGGAGGCAGAGGATGGTGCTCCTCGCTAGACTCG-TGCA
ATTTT----------------------------------------TTGGAGTGCTCCATCA-----AAATGTGTGTTGTC
ATTCGGCATGTCGAATTACCACTGAGGCCTGATTTTTCTTCTTC------TGAATGTGTATGTAGTGGAACCAAACTGCT
TGACTGTAGTGCCATTTTTTGGGTCTTTCTGATGAGTTCCTCACTTTGTTGATTGCTTGTGGAAATGAAACAAAAAACCC
ATGTTCCACACATAGCAACTAGCAAGGGGAAAT-----AAATATTAAGCAACACATGGCTTTTGGCTTCTAAGTCTGCGA
GGATGGAAGTTAACTACAGCCGTTTATGCACAT--ATTTGTTTTAAGAAGCAAAGGCGTACTGGATATCTGTAGGGCTAG
CACATAGTATGATGTATGCTCAATGA----------------AAAATGTTTTCTAAACAGATCCACAAAAATTACACGAC
AAGGTCACAGTTTAGAGGGTTCTTCTCTGCTACTGTACTTGTTATACTGCATCCTGAATGGATCCAGCAGAGACAGGTAT
CTGCAAGCATTCTTCCGGCTCAAG------------------GGCTGAATCATATACTAA-------------------T
TTACAACATACTATAGT---------------------------------------------------------------
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----------------GTACGATGCATTAGCAACATTACTGAACAACTTGGAGCATTTTCATATGTATTGCAAAATTCCT
GCGAACTTTGTATGGGGTCATTCAAGTTCAGGAATGCTCTGTGGTACTCTGGATTCAGGACGGAGCTGACCATTTGAACT
ACTGATCATGCTGGTTTGGGGACTTTTGAGAGGCAAGTAAGAAGTCCAAGACGACCTCGTTGAACCGATTCGGGTCCTCC
ATCTGCGGCACATGCCCGGTTTCCTTGAAGATTTCCAACCTCACATTCTCTCCCAAGCACCTGAAACCATCGGAAGC
>SNPs
SSSSSSSS--------S-S-S---S---------S-------SSSS----------------------------------
-S---------SS------------------------------------------------------S------S---SS
-------S----S---S-----------------S-SSSSSSSSSSSSSS---S-----S-----S----S-S-------
---SS-----S----S-----S----S--------------S-SSSSSSSSSSSSSSSSS--------------S-----
SSS-SSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S-S-SS---S-SSSS----SS-
-S----S-S-SSSSSSSSSS--SSSSSS-SSSSSSS--SSSSS--SSSSS-SSS-SSSSSSSSSS-SSSS-S-SSSSSSS
S-SS----S--SSSSSSSSSSSS---SS--SSSS-SS--SSSSSSSS-SSSSSS-SSSSS-SSSSS-S-SSS-S-S-SSS
SS-SSS-SSSSSS-------------------------------------------------------------------
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---------------------------------------------------------------------------S-S--
-S-----SSSS--S-----SSS-SSSSSSSS-SS--SSSSSSSSSSSS-SSSSSSSSS--SSSSSS-S--SS-S--SSSS
SS-S--SSSSSS--S-SSSSSS-S-SSSS-SSS-S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S------------------
------------S-------------------------------------------------------------------
-----------S--------------------------------------------------------------------
------------------------------------------S----------------------------S--------
-------S---------------------------------------------------------S--------------
--------------------------------------------------------S-----------------------
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----------------------------------------------------------------------------S---
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---------------------------------------S-----SSSSSS-----------------------------
--------------------------S-----S-------------------------------------SS------S-
-------------------------S------------------------------------------------------
------------------S-----------------------------------------------SSSSS---------
--S-----------------------------------------------------------------------------
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--------------------------------------SS-------------S--------------------------
-----------------------------------------------------S--S--S-------------S-S----
---------------------------------------------S----------SS-------------SS-------
-------------------------------S------------SSSSSS-------------------------S----
-----------S---S----S---S-S-SSS----------------------------S--------------------
SS-S---SSSSSS-----------------------------------S----S----------------------SS--
----S--S------------------S-----S------------------------S-SSS---------S-S--S---
--S-----S------------------------------------SS-----S--------S-----S--S---------
---------S---S--S-------------S----------S--------S-----------------------------
--------------S-----SS-SSSSSSSSSSSSSSSSSSS-----------------S--------------------
------------------S-----SS----------SSS-SSS--S-S-SSS--SS-SS-S-SSSSSSS-S---SS-SSS
SSSSSS--SS--SSSSS-SSS-S-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-----S---S-S-SS----S------S------------------------------S----------S-----------
--S--------------SS-------------------------------------------------------------
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>forward_93
-------------------------------------------------------------------------AGCGACC
ACCTCACTCATTG-------------------------------------------------------------------
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>reverse_1917
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----------------------------------------------------------------------------TCTC
GTCCTCACCTGGTTCC----------------------------------------------------------------
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>forward_1237
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-----------------GAGTAGACGGGAGCTGCATG-------------------------------------------
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>reverse_3020
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-----------------------------------------------------------CTGGATCTGCACAGTCAGCA-
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