Multiple sequence alignment - TraesCS4B01G287900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G287900 chr4B 100.000 2554 0 0 1 2554 572158641 572156088 0.000000e+00 4717.0
1 TraesCS4B01G287900 chr4B 94.545 110 6 0 2445 2554 646113816 646113925 1.220000e-38 171.0
2 TraesCS4B01G287900 chr4D 95.864 1209 40 7 1 1204 458092674 458091471 0.000000e+00 1947.0
3 TraesCS4B01G287900 chr4D 87.932 1301 89 31 1205 2454 458091402 458090119 0.000000e+00 1471.0
4 TraesCS4B01G287900 chr4A 94.805 1155 42 6 55 1204 10937677 10938818 0.000000e+00 1784.0
5 TraesCS4B01G287900 chr4A 87.581 926 67 25 1204 2092 10938859 10939773 0.000000e+00 1029.0
6 TraesCS4B01G287900 chr4A 88.822 331 13 11 2141 2454 10939784 10940107 3.990000e-103 385.0
7 TraesCS4B01G287900 chr4A 96.923 65 2 0 1 65 10937595 10937659 2.690000e-20 110.0
8 TraesCS4B01G287900 chr1A 97.248 109 2 1 2447 2554 523010049 523010157 1.560000e-42 183.0
9 TraesCS4B01G287900 chr6B 98.058 103 2 0 2452 2554 226866955 226867057 2.020000e-41 180.0
10 TraesCS4B01G287900 chr6B 97.087 103 3 0 2452 2554 14780004 14779902 9.390000e-40 174.0
11 TraesCS4B01G287900 chr6B 97.087 103 3 0 2452 2554 143439803 143439905 9.390000e-40 174.0
12 TraesCS4B01G287900 chr5B 98.058 103 2 0 2452 2554 528584606 528584708 2.020000e-41 180.0
13 TraesCS4B01G287900 chr5B 96.190 105 4 0 2450 2554 380817573 380817469 3.380000e-39 172.0
14 TraesCS4B01G287900 chr2B 97.143 105 3 0 2450 2554 10219955 10220059 7.260000e-41 178.0
15 TraesCS4B01G287900 chr2B 97.087 103 3 0 2452 2554 256148465 256148567 9.390000e-40 174.0
16 TraesCS4B01G287900 chr2B 90.361 83 8 0 1414 1496 746680788 746680870 2.690000e-20 110.0
17 TraesCS4B01G287900 chr2A 91.549 71 6 0 1414 1484 744408905 744408975 5.820000e-17 99.0
18 TraesCS4B01G287900 chr7B 100.000 42 0 0 1774 1815 746301461 746301502 7.580000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G287900 chr4B 572156088 572158641 2553 True 4717 4717 100.00000 1 2554 1 chr4B.!!$R1 2553
1 TraesCS4B01G287900 chr4D 458090119 458092674 2555 True 1709 1947 91.89800 1 2454 2 chr4D.!!$R1 2453
2 TraesCS4B01G287900 chr4A 10937595 10940107 2512 False 827 1784 92.03275 1 2454 4 chr4A.!!$F1 2453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 137 0.755079 TTCTGATCTGCCAGGATCGG 59.245 55.0 11.61 11.61 45.49 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1953 0.036732 ATTGGCGCTGAAAGAGGTGA 59.963 50.0 7.64 0.0 34.07 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 128 7.478322 TGAGATTGCTAAAATTTCTGATCTGC 58.522 34.615 0.00 0.00 0.00 4.26
108 137 0.755079 TTCTGATCTGCCAGGATCGG 59.245 55.000 11.61 11.61 45.49 4.18
367 396 6.595716 AGAGCCACTGTTCTTATTTCATACAC 59.404 38.462 0.00 0.00 0.00 2.90
403 433 4.535526 ATGTGGGGCAAGAACAATAAAC 57.464 40.909 0.00 0.00 0.00 2.01
426 456 4.261572 CCCCACATATATTTTGGCAGTTCG 60.262 45.833 4.99 0.00 0.00 3.95
429 459 5.527214 CCACATATATTTTGGCAGTTCGAGA 59.473 40.000 0.00 0.00 0.00 4.04
585 615 3.435026 GCTCCTCAGTATGGTCTCTCTCT 60.435 52.174 0.00 0.00 36.16 3.10
594 632 4.696479 ATGGTCTCTCTCTCTCTCTCTC 57.304 50.000 0.00 0.00 0.00 3.20
604 642 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
605 643 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
606 644 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
607 645 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
608 646 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
609 647 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
610 648 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
612 650 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
613 651 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
614 652 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
615 653 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
616 654 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
617 655 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
618 656 4.339530 TCTCTCTCTCTCTCTCTCTCTTCG 59.660 50.000 0.00 0.00 0.00 3.79
619 657 3.126831 CTCTCTCTCTCTCTCTCTTCGC 58.873 54.545 0.00 0.00 0.00 4.70
620 658 2.499693 TCTCTCTCTCTCTCTCTTCGCA 59.500 50.000 0.00 0.00 0.00 5.10
621 659 2.868583 CTCTCTCTCTCTCTCTTCGCAG 59.131 54.545 0.00 0.00 0.00 5.18
622 660 2.236146 TCTCTCTCTCTCTCTTCGCAGT 59.764 50.000 0.00 0.00 0.00 4.40
623 661 2.609459 CTCTCTCTCTCTCTTCGCAGTC 59.391 54.545 0.00 0.00 0.00 3.51
712 750 2.936032 AGGGTCTTGGACTGGGCC 60.936 66.667 0.00 0.00 32.47 5.80
724 762 4.624364 TGGGCCGAGCACTGTGTG 62.624 66.667 9.86 0.03 36.51 3.82
736 774 3.141398 GCACTGTGTGGATCAGAAGAAA 58.859 45.455 9.86 0.00 36.81 2.52
941 982 5.514136 CCAACCATAAACCCTCACTGTCTTA 60.514 44.000 0.00 0.00 0.00 2.10
996 1037 1.737838 TCCGATCACTCACATTTGCC 58.262 50.000 0.00 0.00 0.00 4.52
997 1038 1.003003 TCCGATCACTCACATTTGCCA 59.997 47.619 0.00 0.00 0.00 4.92
999 1040 3.118445 TCCGATCACTCACATTTGCCATA 60.118 43.478 0.00 0.00 0.00 2.74
1032 1073 1.367840 GTCACGGTCAAGGCAGTCT 59.632 57.895 0.00 0.00 0.00 3.24
1098 1139 0.474660 AGTTGCAGGACCTCCTTCCT 60.475 55.000 0.00 0.00 46.09 3.36
1148 1190 4.686091 AGTACGTATCATTCATCATTGGCG 59.314 41.667 0.00 0.00 0.00 5.69
1151 1193 5.053811 ACGTATCATTCATCATTGGCGTTA 58.946 37.500 0.00 0.00 0.00 3.18
1154 1196 6.128580 CGTATCATTCATCATTGGCGTTATCA 60.129 38.462 0.00 0.00 0.00 2.15
1177 1219 6.828273 TCACTTTATATGCAGCAAATGGTAGT 59.172 34.615 0.00 0.00 0.00 2.73
1188 1230 6.749118 GCAGCAAATGGTAGTTCTAGAAATTG 59.251 38.462 11.16 3.37 0.00 2.32
1190 1232 8.946085 CAGCAAATGGTAGTTCTAGAAATTGTA 58.054 33.333 11.16 0.00 0.00 2.41
1191 1233 9.515226 AGCAAATGGTAGTTCTAGAAATTGTAA 57.485 29.630 11.16 0.00 0.00 2.41
1227 1338 5.715279 TGTAGTTACAGTCTAGCATTCACCT 59.285 40.000 0.00 0.00 0.00 4.00
1232 1343 4.573900 ACAGTCTAGCATTCACCTTTCAG 58.426 43.478 0.00 0.00 0.00 3.02
1235 1346 4.530161 AGTCTAGCATTCACCTTTCAGTCT 59.470 41.667 0.00 0.00 0.00 3.24
1241 1352 4.392940 CATTCACCTTTCAGTCTCTTGGT 58.607 43.478 0.00 0.00 0.00 3.67
1269 1383 7.230108 ACATTAAGGCCTAATGATGATGAACTG 59.770 37.037 27.58 10.07 46.88 3.16
1321 1435 0.459237 ATGCTCTTCCGACGCTTCAG 60.459 55.000 0.00 0.00 0.00 3.02
1329 1446 1.225936 CGACGCTTCAGCTTGCATG 60.226 57.895 0.00 0.00 39.32 4.06
1366 1483 5.189736 AGTTATACTGATCTTGGCCTGACAA 59.810 40.000 3.32 0.00 0.00 3.18
1368 1485 1.081892 CTGATCTTGGCCTGACAACG 58.918 55.000 3.32 0.00 0.00 4.10
1371 1488 0.620556 ATCTTGGCCTGACAACGGAT 59.379 50.000 3.32 0.00 0.00 4.18
1374 1491 1.488705 TTGGCCTGACAACGGATCCT 61.489 55.000 10.75 0.00 0.00 3.24
1375 1492 1.153349 GGCCTGACAACGGATCCTC 60.153 63.158 10.75 0.50 0.00 3.71
1390 1510 3.010696 GGATCCTCTTTCCCTTTGGTTCT 59.989 47.826 3.84 0.00 0.00 3.01
1392 1512 3.053077 TCCTCTTTCCCTTTGGTTCTCA 58.947 45.455 0.00 0.00 0.00 3.27
1397 1517 6.183361 CCTCTTTCCCTTTGGTTCTCAAAATT 60.183 38.462 0.00 0.00 43.88 1.82
1404 1524 5.163416 CCTTTGGTTCTCAAAATTCAGGTGT 60.163 40.000 0.00 0.00 43.88 4.16
1406 1526 3.563808 TGGTTCTCAAAATTCAGGTGTCG 59.436 43.478 0.00 0.00 0.00 4.35
1419 1539 0.106149 GGTGTCGTCTTCAAGGGTGT 59.894 55.000 0.00 0.00 0.00 4.16
1661 1781 5.527033 AGCGATCTTTAATTAGTACCGGAC 58.473 41.667 9.46 1.42 0.00 4.79
1692 1812 2.754552 ACCTACTTAATCCGCGTGTGTA 59.245 45.455 4.92 0.00 0.00 2.90
1711 1831 2.488792 CGCTGTCGTCGTGTCATCG 61.489 63.158 0.00 0.00 0.00 3.84
1757 1880 6.935741 TGTGTGTGTACTTAAATCAAAGCT 57.064 33.333 0.00 0.00 0.00 3.74
1758 1881 6.954944 TGTGTGTGTACTTAAATCAAAGCTC 58.045 36.000 0.00 0.00 0.00 4.09
1759 1882 6.071463 GTGTGTGTACTTAAATCAAAGCTCG 58.929 40.000 0.00 0.00 0.00 5.03
1760 1883 5.756347 TGTGTGTACTTAAATCAAAGCTCGT 59.244 36.000 0.00 0.00 0.00 4.18
1778 1915 1.595976 CGTCGTGGTTCGTGCAAATTT 60.596 47.619 0.00 0.00 40.80 1.82
1794 1933 5.736040 CAAATTTTGCTCGTGTCTCATTC 57.264 39.130 0.00 0.00 0.00 2.67
1802 1941 0.161658 CGTGTCTCATTCGTGTGTGC 59.838 55.000 0.00 0.00 0.00 4.57
1803 1942 1.217001 GTGTCTCATTCGTGTGTGCA 58.783 50.000 0.00 0.00 0.00 4.57
1804 1943 1.597195 GTGTCTCATTCGTGTGTGCAA 59.403 47.619 0.00 0.00 0.00 4.08
1805 1944 1.866601 TGTCTCATTCGTGTGTGCAAG 59.133 47.619 0.00 0.00 0.00 4.01
1806 1945 2.135139 GTCTCATTCGTGTGTGCAAGA 58.865 47.619 0.00 0.00 0.00 3.02
1807 1946 2.156504 GTCTCATTCGTGTGTGCAAGAG 59.843 50.000 0.00 0.00 34.79 2.85
1809 1948 3.005367 TCTCATTCGTGTGTGCAAGAGTA 59.995 43.478 0.00 0.00 34.79 2.59
1810 1949 3.317150 TCATTCGTGTGTGCAAGAGTAG 58.683 45.455 0.00 0.00 34.79 2.57
1811 1950 2.148916 TTCGTGTGTGCAAGAGTAGG 57.851 50.000 0.00 0.00 34.79 3.18
1812 1951 0.319555 TCGTGTGTGCAAGAGTAGGC 60.320 55.000 0.00 0.00 0.00 3.93
1813 1952 1.617755 CGTGTGTGCAAGAGTAGGCG 61.618 60.000 0.00 0.00 0.00 5.52
1814 1953 0.600255 GTGTGTGCAAGAGTAGGCGT 60.600 55.000 0.00 0.00 0.00 5.68
1815 1954 0.319555 TGTGTGCAAGAGTAGGCGTC 60.320 55.000 0.00 0.00 0.00 5.19
1816 1955 0.319555 GTGTGCAAGAGTAGGCGTCA 60.320 55.000 0.00 0.00 0.00 4.35
1817 1956 0.319555 TGTGCAAGAGTAGGCGTCAC 60.320 55.000 0.00 0.00 0.00 3.67
1818 1957 1.014564 GTGCAAGAGTAGGCGTCACC 61.015 60.000 0.00 0.00 39.61 4.02
1833 1973 0.036732 TCACCTCTTTCAGCGCCAAT 59.963 50.000 2.29 0.00 0.00 3.16
1835 1975 1.270550 CACCTCTTTCAGCGCCAATTT 59.729 47.619 2.29 0.00 0.00 1.82
1836 1976 2.487762 CACCTCTTTCAGCGCCAATTTA 59.512 45.455 2.29 0.00 0.00 1.40
1854 1994 6.867816 CCAATTTAAAGTGTTGCTATGCTTGA 59.132 34.615 14.02 0.00 0.00 3.02
1881 2026 1.035139 CTGGGAAGTGTTGCTTGCTT 58.965 50.000 0.00 0.00 43.86 3.91
1934 2079 0.467844 TCTTCTTTTGGGCAGCAGCA 60.468 50.000 2.65 0.00 44.61 4.41
1935 2080 0.038526 CTTCTTTTGGGCAGCAGCAG 60.039 55.000 2.65 0.00 44.61 4.24
1963 2108 1.133853 GCTGATGAGGGCAGATTCCTT 60.134 52.381 0.00 0.00 35.39 3.36
2083 2230 0.299895 CTGATGACTGATCGCAACGC 59.700 55.000 0.00 0.00 33.17 4.84
2105 2252 2.428890 CTGCTTCCCGAGAATACTGACT 59.571 50.000 0.00 0.00 0.00 3.41
2106 2253 2.832129 TGCTTCCCGAGAATACTGACTT 59.168 45.455 0.00 0.00 0.00 3.01
2116 2263 5.177511 CGAGAATACTGACTTGTTGCAAAGA 59.822 40.000 0.00 0.00 0.00 2.52
2118 2265 7.333528 AGAATACTGACTTGTTGCAAAGAAA 57.666 32.000 0.00 0.00 0.00 2.52
2119 2266 7.771183 AGAATACTGACTTGTTGCAAAGAAAA 58.229 30.769 0.00 0.00 0.00 2.29
2121 2268 7.992180 ATACTGACTTGTTGCAAAGAAAAAG 57.008 32.000 0.00 3.28 0.00 2.27
2122 2269 6.024552 ACTGACTTGTTGCAAAGAAAAAGA 57.975 33.333 0.00 0.00 0.00 2.52
2123 2270 6.454795 ACTGACTTGTTGCAAAGAAAAAGAA 58.545 32.000 0.00 0.00 0.00 2.52
2124 2271 6.587608 ACTGACTTGTTGCAAAGAAAAAGAAG 59.412 34.615 0.00 6.80 32.19 2.85
2125 2272 5.868801 TGACTTGTTGCAAAGAAAAAGAAGG 59.131 36.000 0.00 0.00 30.65 3.46
2126 2273 5.178061 ACTTGTTGCAAAGAAAAAGAAGGG 58.822 37.500 0.00 0.00 30.65 3.95
2127 2274 4.135747 TGTTGCAAAGAAAAAGAAGGGG 57.864 40.909 0.00 0.00 0.00 4.79
2128 2275 3.118445 TGTTGCAAAGAAAAAGAAGGGGG 60.118 43.478 0.00 0.00 0.00 5.40
2133 2280 4.574828 GCAAAGAAAAAGAAGGGGGAAAAC 59.425 41.667 0.00 0.00 0.00 2.43
2171 2318 0.529833 AGGAGACATGAGCAGTGACG 59.470 55.000 0.00 0.00 0.00 4.35
2283 2432 6.877611 ACCTTTTCAATGACACGATAAACT 57.122 33.333 0.00 0.00 0.00 2.66
2295 2444 4.110482 CACGATAAACTACAGTAGTGGGC 58.890 47.826 14.25 3.96 39.39 5.36
2361 2522 1.474143 GCCTACAGGATTCTGCTGTCC 60.474 57.143 0.00 0.00 46.32 4.02
2392 2553 2.782222 GCGTCGTCCCATGCCTAGA 61.782 63.158 0.00 0.00 0.00 2.43
2395 2556 0.530870 GTCGTCCCATGCCTAGAAGC 60.531 60.000 0.00 0.00 0.00 3.86
2426 2591 0.896940 TTCCACTACTCGTTCCCGCT 60.897 55.000 0.00 0.00 0.00 5.52
2457 2622 3.822167 CTGGCTAAGCTAGGTACTACTCC 59.178 52.174 0.00 0.00 41.75 3.85
2458 2623 3.156293 GGCTAAGCTAGGTACTACTCCC 58.844 54.545 0.00 0.00 41.75 4.30
2459 2624 3.181430 GGCTAAGCTAGGTACTACTCCCT 60.181 52.174 0.00 0.00 41.75 4.20
2460 2625 4.074259 GCTAAGCTAGGTACTACTCCCTC 58.926 52.174 0.00 0.00 41.75 4.30
2461 2626 3.598693 AAGCTAGGTACTACTCCCTCC 57.401 52.381 0.00 0.00 41.75 4.30
2462 2627 1.420891 AGCTAGGTACTACTCCCTCCG 59.579 57.143 0.00 0.00 41.75 4.63
2463 2628 1.142667 GCTAGGTACTACTCCCTCCGT 59.857 57.143 0.00 0.00 41.75 4.69
2464 2629 2.422661 GCTAGGTACTACTCCCTCCGTT 60.423 54.545 0.00 0.00 41.75 4.44
2465 2630 2.433662 AGGTACTACTCCCTCCGTTC 57.566 55.000 0.00 0.00 36.02 3.95
2466 2631 1.020437 GGTACTACTCCCTCCGTTCG 58.980 60.000 0.00 0.00 0.00 3.95
2467 2632 1.020437 GTACTACTCCCTCCGTTCGG 58.980 60.000 4.74 4.74 0.00 4.30
2468 2633 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
2469 2634 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2470 2635 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
2471 2636 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2472 2637 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2473 2638 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2474 2639 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2475 2640 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2476 2641 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2477 2642 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2478 2643 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2479 2644 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2480 2645 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2481 2646 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
2482 2647 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
2483 2648 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
2484 2649 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
2485 2650 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
2486 2651 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
2487 2652 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
2488 2653 4.434989 CGGAATTACTTGTCGCGAAAATGA 60.435 41.667 13.05 0.13 0.00 2.57
2489 2654 5.387279 GGAATTACTTGTCGCGAAAATGAA 58.613 37.500 13.05 9.97 0.00 2.57
2490 2655 6.027749 GGAATTACTTGTCGCGAAAATGAAT 58.972 36.000 13.05 11.81 0.00 2.57
2491 2656 6.021468 GGAATTACTTGTCGCGAAAATGAATG 60.021 38.462 13.05 2.76 0.00 2.67
2492 2657 3.896648 ACTTGTCGCGAAAATGAATGT 57.103 38.095 13.05 3.46 0.00 2.71
2493 2658 6.469139 TTACTTGTCGCGAAAATGAATGTA 57.531 33.333 13.05 8.01 0.00 2.29
2494 2659 5.545658 ACTTGTCGCGAAAATGAATGTAT 57.454 34.783 13.05 0.00 0.00 2.29
2495 2660 5.560148 ACTTGTCGCGAAAATGAATGTATC 58.440 37.500 13.05 0.00 0.00 2.24
2496 2661 5.351465 ACTTGTCGCGAAAATGAATGTATCT 59.649 36.000 13.05 0.00 0.00 1.98
2497 2662 6.533723 ACTTGTCGCGAAAATGAATGTATCTA 59.466 34.615 13.05 0.00 0.00 1.98
2498 2663 6.510746 TGTCGCGAAAATGAATGTATCTAG 57.489 37.500 12.06 0.00 0.00 2.43
2499 2664 6.270064 TGTCGCGAAAATGAATGTATCTAGA 58.730 36.000 12.06 0.00 0.00 2.43
2500 2665 6.198403 TGTCGCGAAAATGAATGTATCTAGAC 59.802 38.462 12.06 0.00 0.00 2.59
2501 2666 5.398416 TCGCGAAAATGAATGTATCTAGACG 59.602 40.000 6.20 0.00 0.00 4.18
2502 2667 5.173312 CGCGAAAATGAATGTATCTAGACGT 59.827 40.000 0.00 0.00 0.00 4.34
2503 2668 6.358822 CGCGAAAATGAATGTATCTAGACGTA 59.641 38.462 0.00 0.00 0.00 3.57
2504 2669 7.060748 CGCGAAAATGAATGTATCTAGACGTAT 59.939 37.037 0.00 0.00 0.00 3.06
2505 2670 8.700644 GCGAAAATGAATGTATCTAGACGTATT 58.299 33.333 0.00 0.00 0.00 1.89
2534 2699 9.606631 AGTTCTAGATACATCCATTTTCAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
2535 2700 9.383519 GTTCTAGATACATCCATTTTCAAGACA 57.616 33.333 0.00 0.00 0.00 3.41
2536 2701 9.958180 TTCTAGATACATCCATTTTCAAGACAA 57.042 29.630 0.00 0.00 0.00 3.18
2537 2702 9.605275 TCTAGATACATCCATTTTCAAGACAAG 57.395 33.333 0.00 0.00 0.00 3.16
2538 2703 9.388506 CTAGATACATCCATTTTCAAGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
2540 2705 9.739276 AGATACATCCATTTTCAAGACAAGTAA 57.261 29.630 0.00 0.00 0.00 2.24
2544 2709 9.696917 ACATCCATTTTCAAGACAAGTAATTTC 57.303 29.630 0.00 0.00 0.00 2.17
2545 2710 8.853345 CATCCATTTTCAAGACAAGTAATTTCG 58.147 33.333 0.00 0.00 0.00 3.46
2546 2711 8.160521 TCCATTTTCAAGACAAGTAATTTCGA 57.839 30.769 0.00 0.00 0.00 3.71
2547 2712 8.625651 TCCATTTTCAAGACAAGTAATTTCGAA 58.374 29.630 0.00 0.00 0.00 3.71
2548 2713 8.690840 CCATTTTCAAGACAAGTAATTTCGAAC 58.309 33.333 0.00 0.00 0.00 3.95
2549 2714 7.886191 TTTTCAAGACAAGTAATTTCGAACG 57.114 32.000 0.00 0.00 0.00 3.95
2550 2715 5.585500 TCAAGACAAGTAATTTCGAACGG 57.415 39.130 0.00 0.00 0.00 4.44
2551 2716 5.291178 TCAAGACAAGTAATTTCGAACGGA 58.709 37.500 0.00 0.00 0.00 4.69
2552 2717 5.404366 TCAAGACAAGTAATTTCGAACGGAG 59.596 40.000 0.00 0.00 0.00 4.63
2553 2718 4.243270 AGACAAGTAATTTCGAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 96 7.597743 CAGAAATTTTAGCAATCTCAGCTTTGT 59.402 33.333 0.00 0.00 43.25 2.83
99 128 4.856509 TCCTATCTACATACCGATCCTGG 58.143 47.826 0.00 0.00 0.00 4.45
367 396 6.003326 TGCCCCACATTATGTACTCAATATG 58.997 40.000 0.00 0.00 0.00 1.78
403 433 4.261572 CGAACTGCCAAAATATATGTGGGG 60.262 45.833 14.60 4.27 32.71 4.96
544 574 1.463831 GCTTGTGTGAGTCTCATGCTG 59.536 52.381 5.68 0.00 37.56 4.41
585 615 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
594 632 5.507149 CGAAGAGAGAGAGAGAGAGAGAGAG 60.507 52.000 0.00 0.00 0.00 3.20
604 642 1.670811 GGACTGCGAAGAGAGAGAGAG 59.329 57.143 0.00 0.00 0.00 3.20
605 643 1.680555 GGGACTGCGAAGAGAGAGAGA 60.681 57.143 0.00 0.00 0.00 3.10
606 644 0.738389 GGGACTGCGAAGAGAGAGAG 59.262 60.000 0.00 0.00 0.00 3.20
607 645 1.027255 CGGGACTGCGAAGAGAGAGA 61.027 60.000 0.00 0.00 0.00 3.10
608 646 1.431440 CGGGACTGCGAAGAGAGAG 59.569 63.158 0.00 0.00 0.00 3.20
609 647 2.701780 GCGGGACTGCGAAGAGAGA 61.702 63.158 0.00 0.00 0.00 3.10
610 648 2.202676 GCGGGACTGCGAAGAGAG 60.203 66.667 0.00 0.00 0.00 3.20
612 650 1.355066 GAAAGCGGGACTGCGAAGAG 61.355 60.000 0.00 0.00 40.67 2.85
613 651 1.374252 GAAAGCGGGACTGCGAAGA 60.374 57.895 0.00 0.00 40.67 2.87
614 652 1.630244 CTGAAAGCGGGACTGCGAAG 61.630 60.000 0.00 0.00 40.67 3.79
615 653 1.667830 CTGAAAGCGGGACTGCGAA 60.668 57.895 0.00 0.00 40.67 4.70
616 654 2.048222 CTGAAAGCGGGACTGCGA 60.048 61.111 0.00 0.00 40.67 5.10
617 655 1.507141 AAACTGAAAGCGGGACTGCG 61.507 55.000 0.00 0.00 40.67 5.18
618 656 1.519408 TAAACTGAAAGCGGGACTGC 58.481 50.000 0.00 0.00 37.60 4.40
619 657 4.935808 AGTATTAAACTGAAAGCGGGACTG 59.064 41.667 0.00 0.00 36.93 3.51
620 658 5.161943 AGTATTAAACTGAAAGCGGGACT 57.838 39.130 0.00 0.00 36.93 3.85
621 659 5.163784 GGAAGTATTAAACTGAAAGCGGGAC 60.164 44.000 0.00 0.00 38.88 4.46
622 660 4.939439 GGAAGTATTAAACTGAAAGCGGGA 59.061 41.667 0.00 0.00 38.88 5.14
623 661 4.941873 AGGAAGTATTAAACTGAAAGCGGG 59.058 41.667 0.00 0.00 38.88 6.13
712 750 0.244721 TCTGATCCACACAGTGCTCG 59.755 55.000 0.00 0.00 36.81 5.03
724 762 5.046663 AGAGGAAGTGAGTTTCTTCTGATCC 60.047 44.000 0.39 0.00 40.64 3.36
736 774 0.036022 GCAGGCAAGAGGAAGTGAGT 59.964 55.000 0.00 0.00 0.00 3.41
941 982 5.808100 TGGATACTTGGCAGAGAGAGCCT 62.808 52.174 5.74 0.00 45.71 4.58
996 1037 2.034179 TGACCTACGGCTCGACATTATG 59.966 50.000 1.50 0.00 0.00 1.90
997 1038 2.034305 GTGACCTACGGCTCGACATTAT 59.966 50.000 1.50 0.00 0.00 1.28
999 1040 0.172803 GTGACCTACGGCTCGACATT 59.827 55.000 1.50 0.00 0.00 2.71
1018 1059 2.743928 GCCAGACTGCCTTGACCG 60.744 66.667 0.00 0.00 0.00 4.79
1032 1073 1.378646 AGTGATCCTCGACGAGCCA 60.379 57.895 19.55 12.99 0.00 4.75
1148 1190 8.137437 ACCATTTGCTGCATATAAAGTGATAAC 58.863 33.333 1.84 0.00 0.00 1.89
1151 1193 6.720112 ACCATTTGCTGCATATAAAGTGAT 57.280 33.333 1.84 0.00 0.00 3.06
1154 1196 7.557719 AGAACTACCATTTGCTGCATATAAAGT 59.442 33.333 1.84 5.85 0.00 2.66
1213 1323 4.826556 AGACTGAAAGGTGAATGCTAGAC 58.173 43.478 0.00 0.00 39.30 2.59
1214 1324 4.774726 AGAGACTGAAAGGTGAATGCTAGA 59.225 41.667 0.00 0.00 39.30 2.43
1218 1329 3.190118 CCAAGAGACTGAAAGGTGAATGC 59.810 47.826 0.00 0.00 39.30 3.56
1219 1330 4.392940 ACCAAGAGACTGAAAGGTGAATG 58.607 43.478 0.00 0.00 39.30 2.67
1220 1331 4.713792 ACCAAGAGACTGAAAGGTGAAT 57.286 40.909 0.00 0.00 39.30 2.57
1221 1332 4.503714 AACCAAGAGACTGAAAGGTGAA 57.496 40.909 0.00 0.00 39.30 3.18
1227 1338 6.430000 GCCTTAATGTAACCAAGAGACTGAAA 59.570 38.462 0.00 0.00 0.00 2.69
1232 1343 4.844884 AGGCCTTAATGTAACCAAGAGAC 58.155 43.478 0.00 0.00 0.00 3.36
1235 1346 6.964464 TCATTAGGCCTTAATGTAACCAAGA 58.036 36.000 12.58 0.00 45.80 3.02
1241 1352 9.066892 GTTCATCATCATTAGGCCTTAATGTAA 57.933 33.333 12.58 0.00 45.80 2.41
1269 1383 4.754114 GGATTGTCCAAGACATAGCTGATC 59.246 45.833 0.00 0.00 42.40 2.92
1321 1435 5.644644 ACTTTAATGTTAGCTCATGCAAGC 58.355 37.500 1.95 1.95 42.74 4.01
1335 1452 8.275040 AGGCCAAGATCAGTATAACTTTAATGT 58.725 33.333 5.01 0.00 0.00 2.71
1342 1459 4.716784 TGTCAGGCCAAGATCAGTATAACT 59.283 41.667 5.01 0.00 0.00 2.24
1343 1460 5.023533 TGTCAGGCCAAGATCAGTATAAC 57.976 43.478 5.01 0.00 0.00 1.89
1349 1466 1.081892 CGTTGTCAGGCCAAGATCAG 58.918 55.000 5.01 0.00 0.00 2.90
1358 1475 0.250513 AAGAGGATCCGTTGTCAGGC 59.749 55.000 5.98 0.00 33.66 4.85
1366 1483 1.282157 CCAAAGGGAAAGAGGATCCGT 59.718 52.381 5.98 0.00 37.87 4.69
1368 1485 3.010696 AGAACCAAAGGGAAAGAGGATCC 59.989 47.826 2.48 2.48 38.05 3.36
1371 1488 3.053077 TGAGAACCAAAGGGAAAGAGGA 58.947 45.455 0.00 0.00 38.05 3.71
1374 1491 6.382570 TGAATTTTGAGAACCAAAGGGAAAGA 59.617 34.615 0.00 0.00 44.67 2.52
1375 1492 6.581712 TGAATTTTGAGAACCAAAGGGAAAG 58.418 36.000 0.00 0.00 44.67 2.62
1390 1510 4.447290 TGAAGACGACACCTGAATTTTGA 58.553 39.130 0.00 0.00 0.00 2.69
1392 1512 4.275936 CCTTGAAGACGACACCTGAATTTT 59.724 41.667 0.00 0.00 0.00 1.82
1397 1517 0.679505 CCCTTGAAGACGACACCTGA 59.320 55.000 0.00 0.00 0.00 3.86
1404 1524 0.179234 TGCAACACCCTTGAAGACGA 59.821 50.000 0.00 0.00 0.00 4.20
1406 1526 0.954452 CCTGCAACACCCTTGAAGAC 59.046 55.000 0.00 0.00 0.00 3.01
1419 1539 1.468506 TAGGTGCACGTCTCCTGCAA 61.469 55.000 16.53 0.00 46.04 4.08
1661 1781 4.809426 CGGATTAAGTAGGTAACCTGCAAG 59.191 45.833 0.00 0.00 38.73 4.01
1711 1831 5.921962 AAAAAGATGGGCCTGATTAAGAC 57.078 39.130 4.53 0.00 0.00 3.01
1755 1878 3.764049 GCACGAACCACGACGAGC 61.764 66.667 0.00 0.00 45.77 5.03
1757 1880 0.876777 ATTTGCACGAACCACGACGA 60.877 50.000 0.00 0.00 45.77 4.20
1758 1881 0.041663 AATTTGCACGAACCACGACG 60.042 50.000 0.00 0.00 45.77 5.12
1759 1882 2.113910 AAATTTGCACGAACCACGAC 57.886 45.000 0.00 0.00 45.77 4.34
1760 1883 2.455032 CAAAATTTGCACGAACCACGA 58.545 42.857 0.00 0.00 45.77 4.35
1778 1915 1.269569 ACACGAATGAGACACGAGCAA 60.270 47.619 0.00 0.00 0.00 3.91
1785 1924 1.866601 CTTGCACACACGAATGAGACA 59.133 47.619 0.00 0.00 0.00 3.41
1791 1930 2.688507 CCTACTCTTGCACACACGAAT 58.311 47.619 0.00 0.00 0.00 3.34
1794 1933 1.617755 CGCCTACTCTTGCACACACG 61.618 60.000 0.00 0.00 0.00 4.49
1810 1949 2.383527 CGCTGAAAGAGGTGACGCC 61.384 63.158 0.00 0.00 34.07 5.68
1811 1950 3.016474 GCGCTGAAAGAGGTGACGC 62.016 63.158 0.00 0.00 34.07 5.19
1812 1951 2.383527 GGCGCTGAAAGAGGTGACG 61.384 63.158 7.64 0.00 34.07 4.35
1813 1952 0.884704 TTGGCGCTGAAAGAGGTGAC 60.885 55.000 7.64 0.00 34.07 3.67
1814 1953 0.036732 ATTGGCGCTGAAAGAGGTGA 59.963 50.000 7.64 0.00 34.07 4.02
1815 1954 0.883833 AATTGGCGCTGAAAGAGGTG 59.116 50.000 7.64 0.00 34.07 4.00
1816 1955 1.620822 AAATTGGCGCTGAAAGAGGT 58.379 45.000 7.64 0.00 34.07 3.85
1817 1956 3.848272 TTAAATTGGCGCTGAAAGAGG 57.152 42.857 7.64 0.00 34.07 3.69
1818 1957 4.618489 CACTTTAAATTGGCGCTGAAAGAG 59.382 41.667 7.64 0.00 34.07 2.85
1819 1958 4.037446 ACACTTTAAATTGGCGCTGAAAGA 59.963 37.500 7.64 0.00 34.07 2.52
1821 1960 4.314740 ACACTTTAAATTGGCGCTGAAA 57.685 36.364 7.64 0.00 0.00 2.69
1823 1962 3.637432 CAACACTTTAAATTGGCGCTGA 58.363 40.909 7.64 0.00 0.00 4.26
1833 1973 8.709386 TTTTTCAAGCATAGCAACACTTTAAA 57.291 26.923 0.00 0.00 0.00 1.52
1864 2009 3.873805 GAAGCAAGCAACACTTCCC 57.126 52.632 0.00 0.00 36.04 3.97
1934 2079 3.790437 CTCATCAGCGCCCACCCT 61.790 66.667 2.29 0.00 0.00 4.34
1935 2080 4.864334 CCTCATCAGCGCCCACCC 62.864 72.222 2.29 0.00 0.00 4.61
1941 2086 1.505477 GAATCTGCCCTCATCAGCGC 61.505 60.000 0.00 0.00 0.00 5.92
1963 2108 0.321653 GGAAAGCAAGGGAGAGCGAA 60.322 55.000 0.00 0.00 35.48 4.70
2083 2230 1.757118 TCAGTATTCTCGGGAAGCAGG 59.243 52.381 3.13 0.00 34.70 4.85
2105 2252 4.512484 CCCCTTCTTTTTCTTTGCAACAA 58.488 39.130 0.00 0.00 0.00 2.83
2106 2253 3.118445 CCCCCTTCTTTTTCTTTGCAACA 60.118 43.478 0.00 0.00 0.00 3.33
2116 2263 3.386726 CCTTCGTTTTCCCCCTTCTTTTT 59.613 43.478 0.00 0.00 0.00 1.94
2118 2265 2.594131 CCTTCGTTTTCCCCCTTCTTT 58.406 47.619 0.00 0.00 0.00 2.52
2119 2266 1.822062 GCCTTCGTTTTCCCCCTTCTT 60.822 52.381 0.00 0.00 0.00 2.52
2121 2268 1.583495 CGCCTTCGTTTTCCCCCTTC 61.583 60.000 0.00 0.00 0.00 3.46
2122 2269 1.602605 CGCCTTCGTTTTCCCCCTT 60.603 57.895 0.00 0.00 0.00 3.95
2123 2270 1.848886 ATCGCCTTCGTTTTCCCCCT 61.849 55.000 0.00 0.00 36.96 4.79
2124 2271 1.378119 ATCGCCTTCGTTTTCCCCC 60.378 57.895 0.00 0.00 36.96 5.40
2125 2272 1.800681 CATCGCCTTCGTTTTCCCC 59.199 57.895 0.00 0.00 36.96 4.81
2126 2273 1.136774 GCATCGCCTTCGTTTTCCC 59.863 57.895 0.00 0.00 36.96 3.97
2127 2274 0.451783 ATGCATCGCCTTCGTTTTCC 59.548 50.000 0.00 0.00 36.96 3.13
2128 2275 1.398390 AGATGCATCGCCTTCGTTTTC 59.602 47.619 20.67 0.00 36.96 2.29
2133 2280 2.590073 CTACTAGATGCATCGCCTTCG 58.410 52.381 20.67 9.18 0.00 3.79
2171 2318 1.357334 TTTTTGACCGAGCGCAACC 59.643 52.632 11.47 0.00 0.00 3.77
2201 2349 2.151202 CACGGCCAGTGTCACTTTAAT 58.849 47.619 16.51 0.00 45.51 1.40
2283 2432 2.048023 CGTCCCGCCCACTACTGTA 61.048 63.158 0.00 0.00 0.00 2.74
2392 2553 1.077716 GGAACCGGGTGCTATGCTT 60.078 57.895 2.55 0.00 0.00 3.91
2395 2556 0.828022 TAGTGGAACCGGGTGCTATG 59.172 55.000 13.86 0.00 37.80 2.23
2396 2557 0.828677 GTAGTGGAACCGGGTGCTAT 59.171 55.000 13.86 2.79 37.80 2.97
2397 2558 0.251922 AGTAGTGGAACCGGGTGCTA 60.252 55.000 13.86 1.44 37.80 3.49
2399 2560 1.079336 GAGTAGTGGAACCGGGTGC 60.079 63.158 2.93 2.93 37.80 5.01
2400 2561 1.214589 CGAGTAGTGGAACCGGGTG 59.785 63.158 6.32 0.00 37.80 4.61
2401 2562 0.829182 AACGAGTAGTGGAACCGGGT 60.829 55.000 6.32 0.00 37.80 5.28
2402 2563 0.108945 GAACGAGTAGTGGAACCGGG 60.109 60.000 6.32 0.00 37.80 5.73
2426 2591 3.898123 CCTAGCTTAGCCAGGATTGACTA 59.102 47.826 13.37 0.00 0.00 2.59
2454 2619 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2455 2620 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2456 2621 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2457 2622 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2458 2623 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2459 2624 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2460 2625 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
2461 2626 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
2462 2627 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
2463 2628 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
2464 2629 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
2465 2630 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
2466 2631 4.965062 TCATTTTCGCGACAAGTAATTCC 58.035 39.130 9.15 0.00 0.00 3.01
2467 2632 6.523201 ACATTCATTTTCGCGACAAGTAATTC 59.477 34.615 9.15 0.00 0.00 2.17
2468 2633 6.378582 ACATTCATTTTCGCGACAAGTAATT 58.621 32.000 9.15 0.00 0.00 1.40
2469 2634 5.938322 ACATTCATTTTCGCGACAAGTAAT 58.062 33.333 9.15 9.89 0.00 1.89
2470 2635 5.351233 ACATTCATTTTCGCGACAAGTAA 57.649 34.783 9.15 7.80 0.00 2.24
2471 2636 6.533723 AGATACATTCATTTTCGCGACAAGTA 59.466 34.615 9.15 7.41 0.00 2.24
2472 2637 3.896648 ACATTCATTTTCGCGACAAGT 57.103 38.095 9.15 0.00 0.00 3.16
2473 2638 5.799960 AGATACATTCATTTTCGCGACAAG 58.200 37.500 9.15 3.14 0.00 3.16
2474 2639 5.794687 AGATACATTCATTTTCGCGACAA 57.205 34.783 9.15 9.93 0.00 3.18
2475 2640 6.198403 GTCTAGATACATTCATTTTCGCGACA 59.802 38.462 9.15 0.00 0.00 4.35
2476 2641 6.573358 GTCTAGATACATTCATTTTCGCGAC 58.427 40.000 9.15 0.00 0.00 5.19
2477 2642 5.398416 CGTCTAGATACATTCATTTTCGCGA 59.602 40.000 3.71 3.71 0.00 5.87
2478 2643 5.173312 ACGTCTAGATACATTCATTTTCGCG 59.827 40.000 0.00 0.00 0.00 5.87
2479 2644 6.512177 ACGTCTAGATACATTCATTTTCGC 57.488 37.500 0.00 0.00 0.00 4.70
2508 2673 9.606631 GTCTTGAAAATGGATGTATCTAGAACT 57.393 33.333 0.00 0.00 0.00 3.01
2509 2674 9.383519 TGTCTTGAAAATGGATGTATCTAGAAC 57.616 33.333 0.00 0.00 0.00 3.01
2510 2675 9.958180 TTGTCTTGAAAATGGATGTATCTAGAA 57.042 29.630 0.00 0.00 0.00 2.10
2511 2676 9.605275 CTTGTCTTGAAAATGGATGTATCTAGA 57.395 33.333 0.00 0.00 0.00 2.43
2512 2677 9.388506 ACTTGTCTTGAAAATGGATGTATCTAG 57.611 33.333 0.00 0.00 0.00 2.43
2514 2679 9.739276 TTACTTGTCTTGAAAATGGATGTATCT 57.261 29.630 0.00 0.00 0.00 1.98
2518 2683 9.696917 GAAATTACTTGTCTTGAAAATGGATGT 57.303 29.630 0.00 0.00 0.00 3.06
2519 2684 8.853345 CGAAATTACTTGTCTTGAAAATGGATG 58.147 33.333 0.00 0.00 0.00 3.51
2520 2685 8.792633 TCGAAATTACTTGTCTTGAAAATGGAT 58.207 29.630 0.00 0.00 0.00 3.41
2521 2686 8.160521 TCGAAATTACTTGTCTTGAAAATGGA 57.839 30.769 0.00 0.00 0.00 3.41
2522 2687 8.690840 GTTCGAAATTACTTGTCTTGAAAATGG 58.309 33.333 0.00 0.00 0.00 3.16
2523 2688 8.409690 CGTTCGAAATTACTTGTCTTGAAAATG 58.590 33.333 0.00 0.00 0.00 2.32
2524 2689 7.589954 CCGTTCGAAATTACTTGTCTTGAAAAT 59.410 33.333 0.00 0.00 0.00 1.82
2525 2690 6.908284 CCGTTCGAAATTACTTGTCTTGAAAA 59.092 34.615 0.00 0.00 0.00 2.29
2526 2691 6.258287 TCCGTTCGAAATTACTTGTCTTGAAA 59.742 34.615 0.00 0.00 0.00 2.69
2527 2692 5.754406 TCCGTTCGAAATTACTTGTCTTGAA 59.246 36.000 0.00 0.00 0.00 2.69
2528 2693 5.291178 TCCGTTCGAAATTACTTGTCTTGA 58.709 37.500 0.00 0.00 0.00 3.02
2529 2694 5.389516 CCTCCGTTCGAAATTACTTGTCTTG 60.390 44.000 0.00 0.00 0.00 3.02
2530 2695 4.689345 CCTCCGTTCGAAATTACTTGTCTT 59.311 41.667 0.00 0.00 0.00 3.01
2531 2696 4.243270 CCTCCGTTCGAAATTACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
2532 2697 4.579270 CCTCCGTTCGAAATTACTTGTC 57.421 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.