>input_sequence_76149
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ATGTCGAGCCGTAGGTCACGGTCAAGGCAGTCTGGCTCGTCGAGGATCACTGACGAGCAAATCAGCGACCTTGTCTCCAA
GTTGCAGGACCTCCTTCCTGAGGCGCGTCTCCGGGGCAATGATAGAGTACGTA-TCATTCATCATTGGCGTTATCACTTT
ATATGCAGCAAATGGTAGTTCTAGAAATTGTAATTAGACTCTTCT-----------------------------------
---------------------------------GTAGTTACAGT-CTAGCATTCACCTTTCAGTCTCTTGGTTACATTAA
G--GCCTAAT-GATGATGAACTGATCAGCTATGTCTTGGACAATCCTACAATTGCATGCTCTTCCGACGCTTCAGCTT--
-GCATGAGCTAACATTAAAGTTATACTGATCTTGGCCTGACAACGGATCCTC---TTTCCCTTTGGTTCTCAAAATTCAG
GTGTCGTCTTCAAGGGTGTTGCAGGAGACGTGCACCTACATCAGGAGCTTGCACCGGGAGGTGGACGACCTGAGCGAGAG
GCTGTCGGAGCTGCTGGCGACCTCGGACATGAGCAGCGCGCAGGCGGCAATCATCCGCAGCTTGCTGATGTAG-------
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>chr4B_1_TraesCS4B01G287900
GATCGGTTCGGTTCATGCACTCATGTTTCAGCAGTTGTGCATGGTATTAGTTATATTTTTATAAG---------------
-------------GAACAAAGCTGAGATTGCTAAAATTTCTGATCTGCCAGGATCGGTATGTAGATAGGAATTAGGAAAC
TGTACAGAAATGTCACCATAATTACATTGTCTAGGAGGCACTTGCGCATCTATAGAGTAGTGAGTAGTGACTGGAATTTA
CCCGGTATCGCTGTTCCCCCGGGCCCTAGTGTTTGTGGAGACAAGAGATTTGTGCTTCATGCATGGGTGTACACTGAACC
CTAGACATGTCCAAATAGAGCCGCAAACAAAGCCATCTACCAGTAACTGTAGAGCCACTGTTCTTATTTCATACACATAT
TGAGTACATAATGT-GGGGCAAGAACAATAAACCCCACATATATTTTGGCAGTTCGAGAAACATGGCATGTGTTTCTCCT
TCTGACAGTACTGGCCTCCAAGTCGTCTCTCCCACCAGCACTTCATCTCCTGTTGTTCAAAGCTTCCTCCCACTTGCAGC
GGCGATGCACGAGCAGCATGAGACTCACACAAGCTCCTCAGTATGGTCTCTCTCTCTCTCTC--------TCTCTCTCTC
TCTCTCTCTCTCTTCGCAGTCCCGCTTTCAGTTTAATACTTCCTGCATGTGACTGCCATTTGGACCATAGTTTGGTTTTG
TCCCTATAGGTCAGGGTCTTGGACTGGGCCGAGCACTGTGTGGATCAGAAGAAACTCACTTCCTCTTGCCTGCCCTTTGG
GTTTCTCGGTTTGCAGCTGCCACTATTTAACACCCTAGTAGCCACTCATTTCTTTCTCCCATGCACAACTTGTCTTCCCT
CTCTTCCAACACCA---CTTCTTAGTTCCTCTCCGTCCCTGTCTGCCACCACTTCTGTCTCTCAAACTTGTCTCACTCCA
ACCATAAACCCTCACTGTCTTAGGCTCTCTCTGCCAAGTATCCAATTCCTAAGTACATCCGATCACTCACATTTGCCATA
ATGTCGAGCCGTAGGTCACGGTCAAGGCAGTCTGGCTCGTCGAGGATCACTGACGAGCAAATCAGCGACCTTGTCTCCAA
GTTGCAGGACCTCCTTCCTGAGGCGCGTCTCCGGGGCAATGATAGAGTACGTA-TCATTCATCATTGGCGTTATCACTTT
ATATGCAGCAAATGGTAGTTCTAGAAATTGTAATTAGACTCTTCT-----------------------------------
---------------------------------GTAGTTACAGT-CTAGCATTCACCTTTCAGTCTCTTGGTTACATTAA
G--GCCTAAT-GATGATGAACTGATCAGCTATGTCTTGGACAATCCTACAATTGCATGCTCTTCCGACGCTTCAGCTT--
-GCATGAGCTAACATTAAAGTTATACTGATCTTGGCCTGACAACGGATCCTC---TTTCCCTTTGGTTCTCAAAATTCAG
GTGTCGTCTTCAAGGGTGTTGCAGGAGACGTGCACCTACATCAGGAGCTTGCACCGGGAGGTGGACGACCTGAGCGAGAG
GCTGTCGGAGCTGCTGGCGACCTCGGACATGAGCAGCGCGCAGGCGGCAATCATCCGCAGCTTGCTGATGTAGAGCCGGC
TCCCATGCAGTGCGCAGGCGCCTCGTCGCTGTCTTGCTGAGCGCACAAGCCTGAATTTGAGCGTTTGTAGCCTAGGGAGC
GATCTTTAATTAGTACCGGACTTGCAGGTTACCTACTTAATCCGCGTGTGTACGCTGTCGTCGTGTCATCGTC---TTAA
TCAGGCCCATCTTTTTTGTGTGTGTACTTAAATCAAAGCTCGT--------------CGTGGTTCGTGCAAATTTTG--C
TCGTGTCTCATTCGTGTGTGCAAGAGTAGGCGTCACCTCTTTCA-GCGCCAATTTAAAGTGTTGCTATGCTTGAAAAAAA
-----ACTGGGAAGTGTTGCTTGCTTCCTCTTTTGGCACAAGAGGGTTCATGGGAGTTGTCTTCTTTTGGGCAGCAGCAG
GGTGGGCGCTGATGAGGGCAGATTCCTTTCGCTCTCCCTTGCTTTCCAGATCTCGCAGCTGCAATTATCAGGACTTCACA
ACCGACAGTTCCGCGATAACAAATCCAAGCACAGGTCGTTAGCCCGGCCTGATGACTGATC--GCAACGCCTGCTTCCCG
AGAATACTGACTTGTTGCAAAGAAAAAGAAGGGGGAAAACGAAGGCGATGCATCTAGTAGGAGACATGAGCAGTGACGGT
TG-CGCTCGGTCAAAAAACTACGGTAGAATTAAAGTG-ACACTGGCCGTGTGAATGAACTTGTCGATTGACTGCAGACAG
ACGCGATAACCTTTTCAATGACACGATAAACTACAGTAGTGGGCGGGACGGGGGGATCC------------AATAATATC
TCGATATCATTTTCAATGGGAGCCTACAGGATTCTGCTGTCCTGCGCGCTTCCGGCGTCGTCCCATGCCTAGAAGCATAG
CACCCGGTTCCACT----ACTCGTTCCCGCTAGTCAATCCTGGCTAAGCTAGGTACTACTCCCTCCGTTCGGAATTACTT
GTCGCGAAAATGAATGTATCTAGACGTATTTTAGTTCTAGATACATCCATTTTCAAGACAAGTAATTTCGAACGGAGG
>chr4D_1
GATTGGTTCGGTTCATGCACTCATGTTTCAGCAGTTGTGCATGGTATTAGTTATATTTTTATAAG---------------
-------------GAGCAAAGCTGAGAGTGCTAAAATTTCTGATCTGACAGGATCGATATGTAGATAGGAATTAGGAAAC
TGTACAGAAATGTCACCATAATTACATTGTCTAGGAGGCACTTGCGCATCTATAGAGTAGTGAGTAGTGACTGGAATTTA
CCCGGTATCGCTGTTCCCCCGGGCCCTAGTGTTTGTGGAGACAAGAGATTTGTGCTTCATGCATGGGTGTACACTGAACC
CTAGACATGTCCAAATAGAGCCGCAAACAAAGCCATCTACCAGTAACTGTAGAGCCACTGTTCTTATTTCATACAAATAT
TAAGTACATAATGTGGGGGCAAGAACAATAAA-CCCACATATATTTTGGCAGTTCAAGTAACATGGCATGTGTTTCTCCT
TCTGACAGTACTGGCCTCCAAGTCGTCTCTCCCACCAGCACTTCATCTCCTGTTGTTCAAAGCTTCCTCCCACTTGCAGC
GGCGATGTACGAGTAGCATGAGACTCACACAAGCTCCTCAGTATGGTCTCTCTCCCTCTCTATGTCTCTGTGTCTCTCTC
TTCGCAGTT------------CCGCTTTCAGTTTAATATTTCCTGCATGTGACTGCCATTTGGACCATAGTTTGGTTTTG
TCCCTATAGGTCAGGGTCTTGGACTGGGCTGTGCACTGTGTAGATCAGAAGAAGCTTACTTCCTCTTGCCTGCCCTTTGG
GTTTCTCGGTTTGCAGCTGCCACTATTTAACACCCTAGTAGCCACTCATTTCTTTCTCCCATGCACAACTTGTCTTCCCT
CTCTTCCAACACCATTTCTTCTTAGCTCCTCTCCGTCCCTGTCTGCCACCACTTCTGTCCCTCAAACTTGTCTCACTCCA
ACCATAAACCCGCACTGTCTTGGGCTCTCTCTGCCAAGTATCCAATTCCTAAGTACATCCGATCACTCACATTTGCAGTG
ATGTCGAGCCGTAGGTCAAGGTCAAGGCAGTCCGGCTCGTCGAGGATCACTGACGAGCAAATCAGCGACCTTGTCTCCAA
GTTGCAGGACCTCCTTCCCGAGGCGCGTCTCCGGGGCAATGATAGAGTACGTAATCATTCATCATTGGCATTCTCTCTTT
ATATGCAGCAAATGGTTGCTCTAGAAATTATGGTTAGACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACACACACA
CCCAAACACAAAGAAATTGGCCACTGCTTTGTGGTAGTTACAAATCTACTGCTCACCGTTCAATCCCTTGGCTACATTAA
G--GCCTAATAAATGATGAACTAATCAACTATGTCCTGTACAATCCTACAATTGCATGCTCTTCCGACGCTTCAACTTTC
TGCATTAGCTATCATTAACATTATAATGATCTTGACCTGACAGCAGACCCGTTAATTTCCCTTTGGTTCCCCAAATCCAG
GTGCCATCTTCAAGGGTGCTGCAGGAGACGTGCACCTACATCAGGAGCTTGCACCGGGAGGTGGACGACCTGAGCGAGAG
GCTGTCGGAGCTGCTGGCGACCTCGGACATGAGCAGCGCGCAGGCGGCAATCATCCGCAGCTTGCTGATGTAGAGCCGGC
TCCCATGCAGTGCGCAGGCGCCTCGTCGCTGTCTTGCTGAGCGCACAAGCCTGAATTTGAGCGTTTGTAGCCTAGGGAGC
GATCTTTAATTAGTACCGGAGTTGCAGGTTACCTACTTAATCCGCGTGTGTGCGCTGTCGTCGTGTCATCATCGTCTTAA
TCAGGCCCATCTTTTTTGTGTGTGTACTTAAATCAAGTCGTTAAATCAAACCCCGCCCGTGGTTCGTGCAAATTGTG--C
TCGCGTCTCGTTTGTGTGTGATGTGCTGCTTCCAGTGGCGTCACGGCGCCAACTCGAAGTGTTGCCATGCTTAGAAAAAA
A-GACACTCGGAAGTGTTGCTTGCTGCCTCTTTTGGCACAAGAAGATTCATGGGAGTTGTCTTCTTTTGGGCAGCAGCGT
GGTGGTCGCTGATGAGGGCAGATTCCTCTCGCTCTCCCTTGCTTTCCAGATCTCGCAGCTGCAATTATCAGGACTTCACA
ACCGACAGTTCCGCGATAACAAATCCAAGCACAGGTCGTTAGCCCAGTCTGATGACTGATC--GCAACGTCTGCTCCGCG
GGAATACTGACGCGTTGCAAAGGAGGAA-------AAAAAGAAGGCGATGCATCTAGGAGGTG---TGAGCAGTGACAGT
TGACGCTCGGTCAAAAAACTACGGTAGATTCTGAAATCACACTCGCCGTCTGAATGAACTTGTGGATTGACTGCAGACAG
ACACGATAACCTTTTCAATGACACGATAAACCACAGTAGTGGGTGGGACGGGAGGGGGGATCCATTCCAATAATAATATC
TCGATATCATTTTCAATGGGAGCCTACAGGATTCTGCTGTCGTCCGCGCTTCCGGCGTCGTCCCATGCCTAGCAGAGCA-
---CCGGTTCCACTACTTACTCGTTCCCGCGAGTCAATCCTGGCTAAGCTAGGTACTA----------------------
------------------------------------------------------------------------------
>chr4A_1
GATCGGTTTGGTTCATGCACTCATGTTTCAGCAGTTGTGCATGGTATTAGCTATATTTTTATAAGTTACGATGCAAGAGC
AGATTTTCATAAGGAGCAAAGCTGAGATTGCTAAAATTTCTGATCTGACAGGATAGATATGTAGATAGGAATTAGGAAAC
TGTACAAAAATGTCACCATAATTACATTGTCTAGGAGGCACTTGCGCATCTATGGAGTAGTGAGTAGTGACTGGAATTCA
CCCGGTATCACTGTTCCTCGGGGACCTAGTGTTTGCGGAGACAAGAGATTTGTGCTTCATGCACGGGTGTACACTGAACC
CTAGACATGTCCAAATAGAGCCGCAAACAAAGCCATCTACCAGTAACTGTAGAGCCACTGTTCTTATTTCATACAAATAT
TGAGTACATAATGTGGGGGCAAGAACAATAAA-CCCACACATATTTTGGCAGTTCAAGTAACATGGCATGTGTTTCTCCT
TCTGACAGTACTGGCCTCCAAGTCGTCTCTCCCACCAGCACTTCATCTCCTGTTGTTCAAAGCTTCCTCCCACTTGCAGC
GGCGATGCACGAGTAGCATGAGACTCGCACAAGCTCCTCAGTATGGTCTCTCTCCCTCTCTC--------TGTCTCTCTC
TTGGCAGTT------------CCGCTTTCAGTTTAATACTTCCTGCATGTGACTGCCATTTGGACCATAGTTTGGTTTTG
TCCCTATAGGTCAGGGTCTTGTACTGGGCTGAGCACTGTGTAGATCAGAAGAAGCTCACTTCCTCTTGCCTGCCCTTTGG
GTTTCTCGGTTTGCAGCTGCCACTATTTAACACCCTAGTAGCCACTCATTTCTTTCTCCCATGCACAACTTGTCTTCCCT
CTCTTCCAACACCACTTCTTCTTAGTTCCTCTCCGTCCCTGTCTGCCACCACTTCTGTCTCTCAAACTTGTCTCACTCCA
ACCATAAACCCTCACTGTCTTGGGCTCTCTCTGCCAAGCATCCAATTCCTAAGTACATCCGATCACTCACATTTGCAGTG
ATGTCGAGCCGTAGGTCAAGGTCAAGGCAGTCCGGCTCGTCGAGGATCACTGACGAGCAAATCAGCGACCTTGTCTCCAA
GTTGCAGGACCTCCTTCCCGAGGCGCGTCTCCGGGGCAATGATAGAGTACGTAATCATTCATCATTGGCATTCTCTCTTT
ATATGCAGCAAATGGTAGCTCTAGAAATTATGGTTAGACTCTTCTTCTTCTTCTTCAC----------------------
-----ACACAAAGAAATTGGCCACTGCTTTGTTGTAGTTACGAC-CTATTGCTTACCGTTCAATTCCTTGGGTATATTAT
AAAGCCTAGTAGATGATGAACTAATCAGCTATGTCTTCGACAATCCTACAATTGCATGCTCTTCCGACGCTTCAACTTTC
TGCATTAGCTATCATTAACATTATAATGATCTTGACCTGACAGCAGACCCGTTAATTTCCCTTTGGTTCCCCAAATCCAG
GTGCCATCTTCAAGGGTGCTGCAGGAGACGTGCACCTACATCAGGAGCTTGCACCGGGAGGTGGACGACCTGAGCGAGAG
GCTGTCGGAGCTGCTGGCGACCTCGGACATGAGCAGCGCGCAAGCGGCCATCATCCGCAGCTTGCTGATGTAGAGCCGGC
TCCCATGCAGTGCGCAGGCGCCTCGTCGCTGTCTTGCTGAGCGCACAAGCCTGAATTTGAGCGTTTGTAGCCTAGGGAGC
GATCTTTAATTAGTACCGGAGTTGCAGGTTACCTACTTAATCCGCGTGTGTGCGCTGTCGTCGTGTCATCATCGTCTTAA
TCAGGCCCATCTTTTTTGTGTGTGTACTTAAATCAAATCGTTAAATCAAACCCCGCCCGTGGTTGGTGCAAGTTGTGCTC
TCGCGTGTCGTTTCTGTGTGATGTGCTGCTTCG---------CA-GCGCCAACTCGAAGTGTTGCTATGCTTGGAAAAAA
AAGACACTCGGAAGCGTTGCTTGCTGCCTCTTTTGGCACAAGAGGGTTCATGGGAGCTGTCCTCTTCTGGGCAGCAGCGT
GGTGGTCGCTGATGAGGGTAGATTCCTCTCGCTCTCCCTTGCTTTCCAGATCTCGCAGCTGCAATTATCAGGACTTCGCA
ACCGACAGTTCCGCGCTAACGAATCCAAGCACAGGTCGTTAGCCCGGCCTGATGACTGATATGGCAACGTCTGCTTCCTG
AAGGCAATGATGCATC-----------------------------------------TAGGAGACATGAGCAGTGACAGT
TGACGCTCGGTCAAAAAACTACGGTAGATTTAAAGTG-ACACTGGCCGTGTGAATGAACCTGTCGATTGACCGCAGACGG
ACGCGATAACCTTTTGAATGACACGATAAACCACAGTAGTGGGTGGGACGGGAGGGGGGATCCATTCCTATAATAATATG
TCGATATCATTTTCAATGGGAGCCTACAGGATTCTGCTGTCGTCCGCGCTTCCGGCGTCGTCCCATGCCTAGCACAGCA-
---CCGGTTCCACTACTTGCTCGTTCCCGCGAGTCAATCCTGGCTAAGCTAGGTACTA----------------------
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>SNPs
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---------------S-------------------------------S--------S-----------------------
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---------------------------------------------------------------------------S----
--------------------------------S----------------------S--S---------------------
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-------------S----------------------------------------S----------------S--------
-SSSSSSS-SSSSSSSSSSSS-----------------------------------------------------------
-----------------------------S-----------S-----------S--------------------------
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---------------------S------------------------------------------------------SS-S
------------------S-------------S-----------------------------------------------
------------------S--------------------------------------------------S--S--S----
------------------S----------S-SS-----------------------------------------------
------------------------------------------SS----SSSS-----S----S--S-----S--------
----------------------S---------------------------------------------------S-----
-----S-----S------SS-----S--------S-------S-S--S--SS-----------------S-S----S---
---S-S------------S-------------------------------------------------------------
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--------------------S------------------------------S------------------S---------
-------------------------------------S-SSSS-------------------------------S-----
---S-----S--S-------SSSSSS-SSSSSSSSSSS-S-S----------S-SS-----------------S------
--------S----------------S----------------------------------------------------SS
-----S---------------------S----------------------------------------------------
---------------------------------------------------------------------S----------
-----------SS---------S-SS-SSSSSSSS----S-------------------------------------S--
----------------------------S---------------------------------------------------
-------------------------------S-----------S--------S--SSSS---------------------
-----------------------------------------S-S----------------------------S--SSS-S
SSS---------------------------S---------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_137
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-------------------------------------TTCTGATCTGCCAGGATCGG-----------------------
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>reverse_1953
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--------------------------------TCACCTCTTTCAGCGCCAAT----------------------------
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