Multiple sequence alignment - TraesCS4B01G279600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G279600 chr4B 100.000 2335 0 0 1 2335 562699044 562696710 0.000000e+00 4313.0
1 TraesCS4B01G279600 chr4B 91.053 190 15 2 2024 2213 251669439 251669252 2.980000e-64 255.0
2 TraesCS4B01G279600 chr4B 80.579 242 41 5 999 1238 562580189 562579952 5.130000e-42 182.0
3 TraesCS4B01G279600 chr4A 81.404 855 77 40 1198 2025 16979460 16980259 7.090000e-175 623.0
4 TraesCS4B01G279600 chr4A 80.198 202 19 14 1470 1658 16985602 16985795 5.240000e-27 132.0
5 TraesCS4B01G279600 chr4A 84.173 139 10 7 1304 1431 16985369 16985506 8.760000e-25 124.0
6 TraesCS4B01G279600 chr4A 81.579 76 11 3 1887 1960 695134924 695134998 2.510000e-05 60.2
7 TraesCS4B01G279600 chr4D 84.692 601 51 23 1315 1885 449970132 449969543 1.570000e-156 562.0
8 TraesCS4B01G279600 chr4D 91.257 366 21 5 1 359 449971159 449970798 2.700000e-134 488.0
9 TraesCS4B01G279600 chr4D 79.787 564 54 23 717 1251 449970683 449970151 2.850000e-94 355.0
10 TraesCS4B01G279600 chr3B 91.150 226 17 3 2026 2248 195559571 195559346 1.050000e-78 303.0
11 TraesCS4B01G279600 chr3B 90.991 222 17 3 2024 2242 648741287 648741508 1.750000e-76 296.0
12 TraesCS4B01G279600 chr5B 91.489 188 14 2 2026 2213 208440372 208440557 8.280000e-65 257.0
13 TraesCS4B01G279600 chr7A 90.476 189 17 1 2026 2213 468300483 468300295 4.980000e-62 248.0
14 TraesCS4B01G279600 chr7B 90.052 191 15 4 2026 2213 728658155 728657966 6.450000e-61 244.0
15 TraesCS4B01G279600 chr7B 100.000 28 0 0 160 187 425223079 425223106 4.000000e-03 52.8
16 TraesCS4B01G279600 chrUn 85.430 151 16 5 2030 2177 257606201 257606054 4.020000e-33 152.0
17 TraesCS4B01G279600 chrUn 85.430 151 16 5 2030 2177 393073435 393073288 4.020000e-33 152.0
18 TraesCS4B01G279600 chrUn 85.430 151 16 5 2030 2177 421013509 421013362 4.020000e-33 152.0
19 TraesCS4B01G279600 chr3D 94.444 36 2 0 1933 1968 42090931 42090896 3.240000e-04 56.5
20 TraesCS4B01G279600 chr3D 100.000 29 0 0 1932 1960 537391517 537391545 1.000000e-03 54.7
21 TraesCS4B01G279600 chr1A 100.000 29 0 0 1932 1960 287305669 287305641 1.000000e-03 54.7
22 TraesCS4B01G279600 chr1B 100.000 28 0 0 886 913 520825388 520825415 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G279600 chr4B 562696710 562699044 2334 True 4313.000000 4313 100.000000 1 2335 1 chr4B.!!$R3 2334
1 TraesCS4B01G279600 chr4A 16979460 16980259 799 False 623.000000 623 81.404000 1198 2025 1 chr4A.!!$F1 827
2 TraesCS4B01G279600 chr4D 449969543 449971159 1616 True 468.333333 562 85.245333 1 1885 3 chr4D.!!$R1 1884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 572 0.031721 ACACGACCGGACTGAAACTC 59.968 55.0 9.46 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2160 0.029834 GGCGTATCACCGTATCACGT 59.97 55.0 0.0 0.0 40.58 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.068741 GTGTTCCGTGTCTCCAAGTCT 59.931 52.381 0.00 0.00 0.00 3.24
128 129 3.135994 CCGGGGAGGTTTATTGATTACG 58.864 50.000 0.00 0.00 34.51 3.18
130 131 3.558418 CGGGGAGGTTTATTGATTACGTG 59.442 47.826 0.00 0.00 0.00 4.49
140 141 3.389925 TTGATTACGTGACCGGAAACT 57.610 42.857 9.46 0.00 41.03 2.66
142 143 2.265683 GATTACGTGACCGGAAACTCC 58.734 52.381 9.46 0.00 41.03 3.85
162 163 3.661911 CCGTCCATTTGTGCGGAA 58.338 55.556 0.00 0.00 46.33 4.30
192 197 8.650490 AGACTTATGAAATGTGGAAATTTTGGT 58.350 29.630 0.00 0.00 29.89 3.67
193 198 9.271828 GACTTATGAAATGTGGAAATTTTGGTT 57.728 29.630 0.00 0.00 29.89 3.67
203 208 8.517062 TGTGGAAATTTTGGTTGAAATTTGAT 57.483 26.923 11.67 0.00 44.74 2.57
206 211 9.798994 TGGAAATTTTGGTTGAAATTTGATTTG 57.201 25.926 11.67 0.00 44.74 2.32
207 212 9.247126 GGAAATTTTGGTTGAAATTTGATTTGG 57.753 29.630 11.67 0.00 44.74 3.28
209 214 7.894753 ATTTTGGTTGAAATTTGATTTGGGT 57.105 28.000 0.00 0.00 31.47 4.51
211 216 6.690194 TTGGTTGAAATTTGATTTGGGTTG 57.310 33.333 0.00 0.00 31.47 3.77
213 218 5.129634 GGTTGAAATTTGATTTGGGTTGGT 58.870 37.500 0.00 0.00 31.47 3.67
262 270 1.750778 CTTGCATTATGTGGTCACCCC 59.249 52.381 0.00 0.00 0.00 4.95
314 322 2.029970 CAGTGTGTGGTGTACGTTGTTC 59.970 50.000 0.00 0.00 0.00 3.18
353 361 3.341823 GTGCTGATCTGAGTTTGGACAT 58.658 45.455 3.42 0.00 0.00 3.06
354 362 4.507710 GTGCTGATCTGAGTTTGGACATA 58.492 43.478 3.42 0.00 0.00 2.29
357 365 4.115516 CTGATCTGAGTTTGGACATACCG 58.884 47.826 0.00 0.00 42.61 4.02
358 366 3.767131 TGATCTGAGTTTGGACATACCGA 59.233 43.478 0.00 0.00 42.61 4.69
359 367 3.587797 TCTGAGTTTGGACATACCGAC 57.412 47.619 0.00 0.00 42.61 4.79
360 368 2.232941 TCTGAGTTTGGACATACCGACC 59.767 50.000 0.00 0.00 42.61 4.79
361 369 1.972075 TGAGTTTGGACATACCGACCA 59.028 47.619 0.00 0.00 42.61 4.02
362 370 2.289195 TGAGTTTGGACATACCGACCAC 60.289 50.000 0.00 0.00 39.28 4.16
363 371 1.073177 GTTTGGACATACCGACCACG 58.927 55.000 0.00 0.00 39.28 4.94
364 372 0.680618 TTTGGACATACCGACCACGT 59.319 50.000 0.00 0.00 39.28 4.49
365 373 1.543607 TTGGACATACCGACCACGTA 58.456 50.000 0.00 0.00 39.28 3.57
366 374 1.766494 TGGACATACCGACCACGTAT 58.234 50.000 0.00 0.00 42.61 3.06
367 375 1.677576 TGGACATACCGACCACGTATC 59.322 52.381 0.00 0.00 42.61 2.24
368 376 1.952296 GGACATACCGACCACGTATCT 59.048 52.381 0.00 0.00 37.88 1.98
369 377 2.287427 GGACATACCGACCACGTATCTG 60.287 54.545 0.00 0.00 37.88 2.90
370 378 2.615447 GACATACCGACCACGTATCTGA 59.385 50.000 0.00 0.00 37.88 3.27
371 379 2.357009 ACATACCGACCACGTATCTGAC 59.643 50.000 0.00 0.00 37.88 3.51
405 413 1.379527 GGGTATCTGACGCTTTTGGG 58.620 55.000 0.00 0.00 37.99 4.12
406 414 1.379527 GGTATCTGACGCTTTTGGGG 58.620 55.000 0.00 0.00 36.61 4.96
407 415 0.733150 GTATCTGACGCTTTTGGGGC 59.267 55.000 0.00 0.00 41.33 5.80
409 417 1.244019 ATCTGACGCTTTTGGGGCAC 61.244 55.000 0.00 0.00 46.04 5.01
410 418 2.124109 TGACGCTTTTGGGGCACA 60.124 55.556 0.00 0.00 46.04 4.57
411 419 2.133742 CTGACGCTTTTGGGGCACAG 62.134 60.000 0.00 0.00 46.04 3.66
412 420 2.912025 ACGCTTTTGGGGCACAGG 60.912 61.111 0.00 0.00 36.61 4.00
413 421 3.683937 CGCTTTTGGGGCACAGGG 61.684 66.667 0.00 0.00 0.00 4.45
414 422 3.313524 GCTTTTGGGGCACAGGGG 61.314 66.667 0.00 0.00 0.00 4.79
415 423 2.201210 CTTTTGGGGCACAGGGGT 59.799 61.111 0.00 0.00 0.00 4.95
417 425 2.945178 CTTTTGGGGCACAGGGGTGT 62.945 60.000 0.00 0.00 46.95 4.16
418 426 3.747521 TTTGGGGCACAGGGGTGTG 62.748 63.158 1.01 1.01 46.95 3.82
424 432 4.974721 CACAGGGGTGTGGGGCAC 62.975 72.222 0.00 0.00 46.97 5.01
431 439 4.974721 GTGTGGGGCACAGGGGTG 62.975 72.222 0.00 0.00 45.43 4.61
433 441 4.974721 GTGGGGCACAGGGGTGTG 62.975 72.222 0.00 1.01 46.95 3.82
439 447 2.518349 CACAGGGGTGTGCGGTTT 60.518 61.111 0.00 0.00 40.24 3.27
440 448 2.203294 ACAGGGGTGTGCGGTTTC 60.203 61.111 0.00 0.00 0.00 2.78
441 449 2.113139 CAGGGGTGTGCGGTTTCT 59.887 61.111 0.00 0.00 0.00 2.52
442 450 2.113139 AGGGGTGTGCGGTTTCTG 59.887 61.111 0.00 0.00 0.00 3.02
443 451 2.983592 GGGGTGTGCGGTTTCTGG 60.984 66.667 0.00 0.00 0.00 3.86
444 452 3.670377 GGGTGTGCGGTTTCTGGC 61.670 66.667 0.00 0.00 0.00 4.85
445 453 3.670377 GGTGTGCGGTTTCTGGCC 61.670 66.667 0.00 0.00 0.00 5.36
451 459 3.361977 CGGTTTCTGGCCGGTTGG 61.362 66.667 12.43 0.00 44.98 3.77
452 460 2.989253 GGTTTCTGGCCGGTTGGG 60.989 66.667 12.43 0.00 39.58 4.12
453 461 2.989253 GTTTCTGGCCGGTTGGGG 60.989 66.667 12.43 0.00 35.78 4.96
454 462 4.293671 TTTCTGGCCGGTTGGGGG 62.294 66.667 12.43 0.00 35.78 5.40
461 469 4.856801 CCGGTTGGGGGCGATCAG 62.857 72.222 0.00 0.00 0.00 2.90
471 479 4.116878 GCGATCAGCCTCCAAGTC 57.883 61.111 0.00 0.00 40.81 3.01
472 480 1.880340 GCGATCAGCCTCCAAGTCG 60.880 63.158 0.00 0.00 40.81 4.18
473 481 1.880340 CGATCAGCCTCCAAGTCGC 60.880 63.158 0.00 0.00 0.00 5.19
474 482 1.522580 GATCAGCCTCCAAGTCGCC 60.523 63.158 0.00 0.00 0.00 5.54
475 483 2.244117 GATCAGCCTCCAAGTCGCCA 62.244 60.000 0.00 0.00 0.00 5.69
476 484 2.527951 ATCAGCCTCCAAGTCGCCAC 62.528 60.000 0.00 0.00 0.00 5.01
477 485 2.925170 AGCCTCCAAGTCGCCACT 60.925 61.111 0.00 0.00 0.00 4.00
478 486 2.032681 GCCTCCAAGTCGCCACTT 59.967 61.111 0.00 0.00 44.26 3.16
479 487 1.600916 GCCTCCAAGTCGCCACTTT 60.601 57.895 0.00 0.00 41.24 2.66
480 488 1.578206 GCCTCCAAGTCGCCACTTTC 61.578 60.000 0.00 0.00 41.24 2.62
481 489 0.955919 CCTCCAAGTCGCCACTTTCC 60.956 60.000 0.00 0.00 41.24 3.13
482 490 0.955919 CTCCAAGTCGCCACTTTCCC 60.956 60.000 0.00 0.00 41.24 3.97
483 491 2.325082 CCAAGTCGCCACTTTCCCG 61.325 63.158 0.00 0.00 41.24 5.14
484 492 2.032071 AAGTCGCCACTTTCCCGG 59.968 61.111 0.00 0.00 40.16 5.73
485 493 2.513259 AAGTCGCCACTTTCCCGGA 61.513 57.895 0.73 0.00 40.16 5.14
486 494 2.031465 GTCGCCACTTTCCCGGAA 59.969 61.111 0.73 0.00 0.00 4.30
487 495 2.033194 GTCGCCACTTTCCCGGAAG 61.033 63.158 0.73 1.18 0.00 3.46
488 496 3.431725 CGCCACTTTCCCGGAAGC 61.432 66.667 0.73 0.00 0.00 3.86
489 497 2.034221 GCCACTTTCCCGGAAGCT 59.966 61.111 0.73 0.00 0.00 3.74
490 498 2.335712 GCCACTTTCCCGGAAGCTG 61.336 63.158 0.73 1.02 0.00 4.24
491 499 1.073199 CCACTTTCCCGGAAGCTGT 59.927 57.895 0.73 0.00 0.00 4.40
492 500 0.537371 CCACTTTCCCGGAAGCTGTT 60.537 55.000 0.73 0.00 0.00 3.16
493 501 0.593128 CACTTTCCCGGAAGCTGTTG 59.407 55.000 0.73 0.00 0.00 3.33
494 502 0.182775 ACTTTCCCGGAAGCTGTTGT 59.817 50.000 0.73 0.00 0.00 3.32
495 503 1.318576 CTTTCCCGGAAGCTGTTGTT 58.681 50.000 0.73 0.00 0.00 2.83
496 504 1.001378 CTTTCCCGGAAGCTGTTGTTG 60.001 52.381 0.73 0.00 0.00 3.33
497 505 1.452145 TTCCCGGAAGCTGTTGTTGC 61.452 55.000 0.73 0.00 0.00 4.17
498 506 1.898574 CCCGGAAGCTGTTGTTGCT 60.899 57.895 0.73 0.00 43.32 3.91
499 507 1.576421 CCGGAAGCTGTTGTTGCTC 59.424 57.895 0.00 0.00 40.22 4.26
500 508 1.576421 CGGAAGCTGTTGTTGCTCC 59.424 57.895 0.00 0.00 40.22 4.70
501 509 1.856265 CGGAAGCTGTTGTTGCTCCC 61.856 60.000 0.00 0.00 40.22 4.30
502 510 0.823356 GGAAGCTGTTGTTGCTCCCA 60.823 55.000 0.00 0.00 40.22 4.37
503 511 1.032014 GAAGCTGTTGTTGCTCCCAA 58.968 50.000 0.00 0.00 40.22 4.12
504 512 1.000938 GAAGCTGTTGTTGCTCCCAAG 60.001 52.381 0.00 0.00 40.22 3.61
505 513 0.106519 AGCTGTTGTTGCTCCCAAGT 60.107 50.000 0.00 0.00 35.67 3.16
506 514 0.746659 GCTGTTGTTGCTCCCAAGTT 59.253 50.000 0.00 0.00 0.00 2.66
555 563 2.501223 GATGCCTGAACACGACCGGA 62.501 60.000 9.46 0.00 0.00 5.14
564 572 0.031721 ACACGACCGGACTGAAACTC 59.968 55.000 9.46 0.00 0.00 3.01
577 592 3.840666 ACTGAAACTCTCCCAAGATGCTA 59.159 43.478 0.00 0.00 0.00 3.49
593 608 1.946475 GCTACGGTCCTGGTCTGGTC 61.946 65.000 4.81 0.00 0.00 4.02
596 611 2.052690 CGGTCCTGGTCTGGTCGAT 61.053 63.158 0.00 0.00 0.00 3.59
600 615 1.030488 TCCTGGTCTGGTCGATCGAC 61.030 60.000 34.70 34.70 43.87 4.20
623 638 4.510711 CAGATCAAATTCTACGATGCTGCT 59.489 41.667 0.00 0.00 0.00 4.24
624 639 4.749099 AGATCAAATTCTACGATGCTGCTC 59.251 41.667 0.00 0.00 0.00 4.26
625 640 3.198068 TCAAATTCTACGATGCTGCTCC 58.802 45.455 0.00 0.00 0.00 4.70
626 641 2.938451 CAAATTCTACGATGCTGCTCCA 59.062 45.455 0.00 0.00 0.00 3.86
643 658 5.573337 GCTCCAGCATTTAATCTGTTCTT 57.427 39.130 0.00 0.00 41.59 2.52
644 659 5.958955 GCTCCAGCATTTAATCTGTTCTTT 58.041 37.500 0.00 0.00 41.59 2.52
645 660 6.393171 GCTCCAGCATTTAATCTGTTCTTTT 58.607 36.000 0.00 0.00 41.59 2.27
646 661 6.870439 GCTCCAGCATTTAATCTGTTCTTTTT 59.130 34.615 0.00 0.00 41.59 1.94
678 693 4.870123 TTTGCAGGCACATTTAATCTGT 57.130 36.364 0.00 0.00 0.00 3.41
679 694 4.870123 TTGCAGGCACATTTAATCTGTT 57.130 36.364 0.00 0.00 0.00 3.16
680 695 4.439305 TGCAGGCACATTTAATCTGTTC 57.561 40.909 0.00 0.00 0.00 3.18
681 696 3.825585 TGCAGGCACATTTAATCTGTTCA 59.174 39.130 0.00 0.00 0.00 3.18
682 697 4.082625 TGCAGGCACATTTAATCTGTTCAG 60.083 41.667 0.00 0.00 0.00 3.02
683 698 4.418392 CAGGCACATTTAATCTGTTCAGC 58.582 43.478 0.00 0.00 0.00 4.26
684 699 4.081406 AGGCACATTTAATCTGTTCAGCA 58.919 39.130 0.00 0.00 0.00 4.41
685 700 4.523943 AGGCACATTTAATCTGTTCAGCAA 59.476 37.500 0.00 0.00 0.00 3.91
686 701 4.622740 GGCACATTTAATCTGTTCAGCAAC 59.377 41.667 0.00 0.00 0.00 4.17
687 702 5.464168 GCACATTTAATCTGTTCAGCAACT 58.536 37.500 0.00 0.00 33.17 3.16
688 703 5.570589 GCACATTTAATCTGTTCAGCAACTC 59.429 40.000 0.00 0.00 33.17 3.01
689 704 6.671190 CACATTTAATCTGTTCAGCAACTCA 58.329 36.000 0.00 0.00 33.17 3.41
690 705 6.800408 CACATTTAATCTGTTCAGCAACTCAG 59.200 38.462 0.00 0.00 33.17 3.35
691 706 6.712095 ACATTTAATCTGTTCAGCAACTCAGA 59.288 34.615 0.00 0.00 40.43 3.27
692 707 7.229306 ACATTTAATCTGTTCAGCAACTCAGAA 59.771 33.333 0.00 0.00 39.75 3.02
693 708 7.566760 TTTAATCTGTTCAGCAACTCAGAAA 57.433 32.000 0.00 0.00 39.75 2.52
694 709 7.566760 TTAATCTGTTCAGCAACTCAGAAAA 57.433 32.000 0.00 0.00 39.75 2.29
695 710 6.645790 AATCTGTTCAGCAACTCAGAAAAT 57.354 33.333 0.00 0.00 39.75 1.82
696 711 6.645790 ATCTGTTCAGCAACTCAGAAAATT 57.354 33.333 0.00 0.00 39.75 1.82
697 712 7.750229 ATCTGTTCAGCAACTCAGAAAATTA 57.250 32.000 0.00 0.00 39.75 1.40
698 713 7.750229 TCTGTTCAGCAACTCAGAAAATTAT 57.250 32.000 0.00 0.00 34.61 1.28
699 714 8.169977 TCTGTTCAGCAACTCAGAAAATTATT 57.830 30.769 0.00 0.00 34.61 1.40
700 715 8.292448 TCTGTTCAGCAACTCAGAAAATTATTC 58.708 33.333 0.00 0.00 34.61 1.75
701 716 7.077605 TGTTCAGCAACTCAGAAAATTATTCG 58.922 34.615 0.00 0.00 33.17 3.34
702 717 6.182039 TCAGCAACTCAGAAAATTATTCGG 57.818 37.500 0.00 0.00 0.00 4.30
703 718 5.123820 TCAGCAACTCAGAAAATTATTCGGG 59.876 40.000 0.00 0.00 0.00 5.14
704 719 4.105486 GCAACTCAGAAAATTATTCGGGC 58.895 43.478 0.00 0.00 0.00 6.13
705 720 4.672409 CAACTCAGAAAATTATTCGGGCC 58.328 43.478 0.00 0.00 0.00 5.80
706 721 2.943033 ACTCAGAAAATTATTCGGGCCG 59.057 45.455 22.51 22.51 0.00 6.13
707 722 1.673920 TCAGAAAATTATTCGGGCCGC 59.326 47.619 23.83 3.29 0.00 6.53
708 723 1.029681 AGAAAATTATTCGGGCCGCC 58.970 50.000 23.83 0.00 0.00 6.13
709 724 1.029681 GAAAATTATTCGGGCCGCCT 58.970 50.000 23.83 13.37 0.00 5.52
710 725 1.407618 GAAAATTATTCGGGCCGCCTT 59.592 47.619 23.83 10.76 0.00 4.35
711 726 2.351706 AAATTATTCGGGCCGCCTTA 57.648 45.000 23.83 9.66 0.00 2.69
712 727 2.351706 AATTATTCGGGCCGCCTTAA 57.648 45.000 23.83 17.92 0.00 1.85
713 728 2.351706 ATTATTCGGGCCGCCTTAAA 57.648 45.000 23.83 10.67 0.00 1.52
714 729 1.381522 TTATTCGGGCCGCCTTAAAC 58.618 50.000 23.83 0.00 0.00 2.01
715 730 0.810823 TATTCGGGCCGCCTTAAACG 60.811 55.000 23.83 3.88 0.00 3.60
737 752 1.798813 GTACGTACGTATAGGACCCGG 59.201 57.143 29.05 0.00 32.82 5.73
800 823 4.078516 GACCCGGTCCGGTCCTTG 62.079 72.222 28.39 15.20 46.80 3.61
819 842 3.992260 TGGTTTTGACGGTTAACCATG 57.008 42.857 24.14 11.39 44.63 3.66
820 843 2.034812 TGGTTTTGACGGTTAACCATGC 59.965 45.455 24.14 12.57 44.63 4.06
821 844 2.034812 GGTTTTGACGGTTAACCATGCA 59.965 45.455 24.14 14.91 40.77 3.96
822 845 3.305744 GGTTTTGACGGTTAACCATGCAT 60.306 43.478 24.14 0.00 40.77 3.96
823 846 3.567576 TTTGACGGTTAACCATGCATG 57.432 42.857 24.14 20.19 35.14 4.06
824 847 0.808125 TGACGGTTAACCATGCATGC 59.192 50.000 24.14 11.82 35.14 4.06
825 848 0.808125 GACGGTTAACCATGCATGCA 59.192 50.000 25.04 25.04 35.14 3.96
826 849 1.405105 GACGGTTAACCATGCATGCAT 59.595 47.619 27.46 27.46 37.08 3.96
827 850 2.616376 GACGGTTAACCATGCATGCATA 59.384 45.455 31.73 14.75 34.91 3.14
828 851 2.357637 ACGGTTAACCATGCATGCATAC 59.642 45.455 31.73 24.21 34.91 2.39
830 853 2.692557 GGTTAACCATGCATGCATACCA 59.307 45.455 31.31 17.71 32.92 3.25
831 854 3.243501 GGTTAACCATGCATGCATACCAG 60.244 47.826 31.31 23.09 32.92 4.00
832 855 0.748450 AACCATGCATGCATACCAGC 59.252 50.000 31.73 0.00 34.91 4.85
840 863 2.689083 TGCATACCAGCATACGCAC 58.311 52.632 0.00 0.00 40.11 5.34
841 864 0.177836 TGCATACCAGCATACGCACT 59.822 50.000 0.00 0.00 40.11 4.40
842 865 0.583438 GCATACCAGCATACGCACTG 59.417 55.000 0.00 0.00 42.27 3.66
849 872 0.798776 AGCATACGCACTGAACAAGC 59.201 50.000 0.00 0.00 42.27 4.01
851 874 1.464687 GCATACGCACTGAACAAGCAG 60.465 52.381 0.00 0.00 41.63 4.24
860 883 4.846137 GCACTGAACAAGCAGTATAAAACG 59.154 41.667 0.00 0.00 46.80 3.60
863 886 5.408604 ACTGAACAAGCAGTATAAAACGGAG 59.591 40.000 0.00 0.00 46.67 4.63
867 890 3.560636 AGCAGTATAAAACGGAGCCAT 57.439 42.857 0.00 0.00 0.00 4.40
881 904 4.247380 CCATGAGCTCGCCCCTCC 62.247 72.222 9.64 0.00 0.00 4.30
882 905 4.247380 CATGAGCTCGCCCCTCCC 62.247 72.222 9.64 0.00 0.00 4.30
899 922 4.335647 CCCACCAAGCAGCCGAGT 62.336 66.667 0.00 0.00 0.00 4.18
900 923 2.281761 CCACCAAGCAGCCGAGTT 60.282 61.111 0.00 0.00 0.00 3.01
901 924 2.328099 CCACCAAGCAGCCGAGTTC 61.328 63.158 0.00 0.00 0.00 3.01
902 925 1.597854 CACCAAGCAGCCGAGTTCA 60.598 57.895 0.00 0.00 0.00 3.18
903 926 1.148273 ACCAAGCAGCCGAGTTCAA 59.852 52.632 0.00 0.00 0.00 2.69
905 928 0.886490 CCAAGCAGCCGAGTTCAAGT 60.886 55.000 0.00 0.00 0.00 3.16
906 929 0.236711 CAAGCAGCCGAGTTCAAGTG 59.763 55.000 0.00 0.00 0.00 3.16
907 930 1.510480 AAGCAGCCGAGTTCAAGTGC 61.510 55.000 0.00 0.00 0.00 4.40
908 931 1.963338 GCAGCCGAGTTCAAGTGCT 60.963 57.895 0.00 0.00 0.00 4.40
909 932 1.905922 GCAGCCGAGTTCAAGTGCTC 61.906 60.000 0.00 0.00 0.00 4.26
913 936 2.886859 CGAGTTCAAGTGCTCGTGT 58.113 52.632 5.88 0.00 46.45 4.49
915 938 1.593006 CGAGTTCAAGTGCTCGTGTTT 59.407 47.619 5.88 0.00 46.45 2.83
917 940 2.866762 GAGTTCAAGTGCTCGTGTTTCT 59.133 45.455 1.75 0.22 0.00 2.52
918 941 2.866762 AGTTCAAGTGCTCGTGTTTCTC 59.133 45.455 1.75 0.00 0.00 2.87
919 942 1.865865 TCAAGTGCTCGTGTTTCTCC 58.134 50.000 1.75 0.00 0.00 3.71
920 943 1.138069 TCAAGTGCTCGTGTTTCTCCA 59.862 47.619 1.75 0.00 0.00 3.86
922 945 0.249911 AGTGCTCGTGTTTCTCCACC 60.250 55.000 0.00 0.00 31.47 4.61
923 946 0.249911 GTGCTCGTGTTTCTCCACCT 60.250 55.000 0.00 0.00 31.47 4.00
924 947 0.249868 TGCTCGTGTTTCTCCACCTG 60.250 55.000 0.00 0.00 31.47 4.00
925 948 1.569479 GCTCGTGTTTCTCCACCTGC 61.569 60.000 0.00 0.00 31.47 4.85
928 959 0.532862 CGTGTTTCTCCACCTGCTGT 60.533 55.000 0.00 0.00 31.47 4.40
929 960 1.230324 GTGTTTCTCCACCTGCTGTC 58.770 55.000 0.00 0.00 0.00 3.51
931 962 1.230324 GTTTCTCCACCTGCTGTCAC 58.770 55.000 0.00 0.00 0.00 3.67
933 964 1.768684 TTCTCCACCTGCTGTCACCC 61.769 60.000 0.00 0.00 0.00 4.61
935 966 0.904865 CTCCACCTGCTGTCACCCTA 60.905 60.000 0.00 0.00 0.00 3.53
941 972 1.338200 CCTGCTGTCACCCTACTCAAC 60.338 57.143 0.00 0.00 0.00 3.18
942 973 1.620819 CTGCTGTCACCCTACTCAACT 59.379 52.381 0.00 0.00 0.00 3.16
943 974 1.344438 TGCTGTCACCCTACTCAACTG 59.656 52.381 0.00 0.00 0.00 3.16
950 981 1.021390 CCCTACTCAACTGGCAAGCG 61.021 60.000 0.00 0.00 0.00 4.68
978 1015 2.032071 GATCATAACCCCGGCCCG 59.968 66.667 0.00 0.00 0.00 6.13
979 1016 2.446994 ATCATAACCCCGGCCCGA 60.447 61.111 3.71 0.00 0.00 5.14
988 1025 1.003718 CCCGGCCCGATAGAAATCC 60.004 63.158 3.71 0.00 39.76 3.01
989 1026 1.374252 CCGGCCCGATAGAAATCCG 60.374 63.158 3.71 0.00 39.76 4.18
997 1034 1.070134 CGATAGAAATCCGCCCAAGGA 59.930 52.381 0.00 0.00 41.77 3.36
1009 1046 0.958382 CCCAAGGAAAATGGCGTCGA 60.958 55.000 0.00 0.00 36.58 4.20
1110 1147 4.016706 CTGGAAGGGGACGGCGTT 62.017 66.667 16.19 0.00 0.00 4.84
1111 1148 4.323477 TGGAAGGGGACGGCGTTG 62.323 66.667 16.19 0.00 0.00 4.10
1112 1149 4.011517 GGAAGGGGACGGCGTTGA 62.012 66.667 16.19 0.00 0.00 3.18
1113 1150 2.741211 GAAGGGGACGGCGTTGAC 60.741 66.667 16.19 7.95 0.00 3.18
1114 1151 4.675029 AAGGGGACGGCGTTGACG 62.675 66.667 16.19 0.00 41.40 4.35
1150 1187 2.969238 CCGGGTCGCTGATCATGC 60.969 66.667 0.00 1.25 0.00 4.06
1154 1191 2.541120 GGTCGCTGATCATGCAGGC 61.541 63.158 14.69 6.01 36.41 4.85
1270 1311 3.211963 CCGGCTGGCTGGCAATAC 61.212 66.667 17.63 0.00 41.89 1.89
1271 1312 2.438254 CGGCTGGCTGGCAATACA 60.438 61.111 17.63 0.00 41.89 2.29
1288 1329 1.669115 CACCTCGAACCTGGCTGTG 60.669 63.158 0.00 0.00 0.00 3.66
1291 1332 3.241530 TCGAACCTGGCTGTGGCT 61.242 61.111 0.00 0.00 38.73 4.75
1292 1333 2.743928 CGAACCTGGCTGTGGCTC 60.744 66.667 0.00 0.00 38.73 4.70
1293 1334 2.743928 GAACCTGGCTGTGGCTCG 60.744 66.667 0.00 0.00 38.73 5.03
1305 1346 4.719369 GGCTCGCCCGCCGTATAG 62.719 72.222 0.00 0.00 40.79 1.31
1307 1348 3.671411 CTCGCCCGCCGTATAGCT 61.671 66.667 0.00 0.00 38.35 3.32
1308 1349 3.612371 CTCGCCCGCCGTATAGCTC 62.612 68.421 0.00 0.00 38.35 4.09
1309 1350 4.719369 CGCCCGCCGTATAGCTCC 62.719 72.222 0.00 0.00 0.00 4.70
1310 1351 3.303928 GCCCGCCGTATAGCTCCT 61.304 66.667 0.00 0.00 0.00 3.69
1311 1352 2.963371 CCCGCCGTATAGCTCCTC 59.037 66.667 0.00 0.00 0.00 3.71
1312 1353 2.637383 CCCGCCGTATAGCTCCTCC 61.637 68.421 0.00 0.00 0.00 4.30
1313 1354 2.637383 CCGCCGTATAGCTCCTCCC 61.637 68.421 0.00 0.00 0.00 4.30
1317 1358 1.575576 CCGTATAGCTCCTCCCGACG 61.576 65.000 0.00 0.00 0.00 5.12
1324 1365 1.663739 CTCCTCCCGACGTTGACAA 59.336 57.895 3.74 0.00 0.00 3.18
1331 1372 0.655733 CCGACGTTGACAAGCTTGTT 59.344 50.000 31.58 16.65 42.43 2.83
1353 1394 7.233689 TGTTTAGATTGATGTTCGTTCATTCG 58.766 34.615 0.00 0.00 31.81 3.34
1376 1418 0.788391 GCTCCCGTTCGTTTGTACAG 59.212 55.000 0.00 0.00 0.00 2.74
1377 1419 1.870993 GCTCCCGTTCGTTTGTACAGT 60.871 52.381 0.00 0.00 0.00 3.55
1378 1420 1.790623 CTCCCGTTCGTTTGTACAGTG 59.209 52.381 0.00 0.00 0.00 3.66
1379 1421 1.408340 TCCCGTTCGTTTGTACAGTGA 59.592 47.619 0.00 0.00 0.00 3.41
1380 1422 1.523934 CCCGTTCGTTTGTACAGTGAC 59.476 52.381 0.00 0.00 0.00 3.67
1381 1423 2.195096 CCGTTCGTTTGTACAGTGACA 58.805 47.619 0.00 0.00 0.00 3.58
1382 1424 2.034339 CCGTTCGTTTGTACAGTGACAC 60.034 50.000 0.00 0.00 0.00 3.67
1383 1425 2.034339 CGTTCGTTTGTACAGTGACACC 60.034 50.000 0.84 0.00 0.00 4.16
1384 1426 3.192466 GTTCGTTTGTACAGTGACACCT 58.808 45.455 0.84 0.00 0.00 4.00
1385 1427 3.088194 TCGTTTGTACAGTGACACCTC 57.912 47.619 0.84 0.00 0.00 3.85
1386 1428 1.784856 CGTTTGTACAGTGACACCTCG 59.215 52.381 0.84 0.00 0.00 4.63
1387 1429 1.525619 GTTTGTACAGTGACACCTCGC 59.474 52.381 0.84 0.00 0.00 5.03
1388 1430 0.318360 TTGTACAGTGACACCTCGCG 60.318 55.000 0.00 0.00 31.62 5.87
1389 1431 1.285023 GTACAGTGACACCTCGCGT 59.715 57.895 5.77 0.00 31.62 6.01
1390 1432 0.728466 GTACAGTGACACCTCGCGTC 60.728 60.000 5.77 0.00 31.62 5.19
1391 1433 0.887836 TACAGTGACACCTCGCGTCT 60.888 55.000 5.77 0.00 34.37 4.18
1400 1442 0.393267 ACCTCGCGTCTAAGAGCTCT 60.393 55.000 11.45 11.45 33.39 4.09
1428 1470 0.393537 AATCGGAGCCTTGGAAGCTG 60.394 55.000 0.00 0.00 41.75 4.24
1493 1567 4.799428 GTCTTGTAACCGAGCTGATTAGTC 59.201 45.833 0.00 0.00 0.00 2.59
1574 1653 1.391485 CCACTTTGAGCTCGTTGATCG 59.609 52.381 9.64 0.00 41.41 3.69
1621 1700 1.987770 CAGCATTTGCCGAATGTTGTC 59.012 47.619 12.06 0.00 46.07 3.18
1638 1717 2.783135 TGTCCAAGGTCATCTCTTTGC 58.217 47.619 0.00 0.00 0.00 3.68
1686 1770 5.730550 TCGGTAGTAAAAGCATGATGTCTT 58.269 37.500 0.00 0.00 0.00 3.01
1737 1826 2.972625 TCAACCTGAACGACATGATCC 58.027 47.619 0.00 0.00 0.00 3.36
1814 1905 4.617253 AGTTCTTTTGGCCCAAAATACC 57.383 40.909 21.32 7.85 41.53 2.73
1844 1944 1.080298 CTCAACCCACGTACGGACC 60.080 63.158 21.06 0.00 0.00 4.46
1852 1952 2.811747 CGTACGGACCGCATGCAA 60.812 61.111 19.57 0.00 0.00 4.08
1870 1970 5.923733 TGCAAAGACCTGAAACCTTTTTA 57.076 34.783 0.00 0.00 0.00 1.52
1889 1989 7.665974 CCTTTTTATGTCTTGTTTCCTACTCCT 59.334 37.037 0.00 0.00 0.00 3.69
1891 1991 8.617290 TTTTATGTCTTGTTTCCTACTCCTTC 57.383 34.615 0.00 0.00 0.00 3.46
1892 1992 4.252971 TGTCTTGTTTCCTACTCCTTCG 57.747 45.455 0.00 0.00 0.00 3.79
1893 1993 3.640029 TGTCTTGTTTCCTACTCCTTCGT 59.360 43.478 0.00 0.00 0.00 3.85
1894 1994 4.828939 TGTCTTGTTTCCTACTCCTTCGTA 59.171 41.667 0.00 0.00 0.00 3.43
1895 1995 5.159925 GTCTTGTTTCCTACTCCTTCGTAC 58.840 45.833 0.00 0.00 0.00 3.67
1906 2006 8.636213 TCCTACTCCTTCGTACAAAATATAAGG 58.364 37.037 0.00 0.00 35.80 2.69
1908 2008 5.751990 ACTCCTTCGTACAAAATATAAGGCG 59.248 40.000 0.00 0.00 34.72 5.52
1963 2064 8.701895 AGGTCTTATATTTTGATACGGAGACAA 58.298 33.333 0.00 0.00 34.27 3.18
2008 2109 7.852971 AACGTTTATGCTAGCCACTTTATTA 57.147 32.000 13.29 0.00 0.00 0.98
2009 2110 7.852971 ACGTTTATGCTAGCCACTTTATTAA 57.147 32.000 13.29 0.00 0.00 1.40
2025 2126 0.455410 TTAATGGCATTGGCACGAGC 59.545 50.000 22.57 0.00 41.84 5.03
2026 2127 0.394216 TAATGGCATTGGCACGAGCT 60.394 50.000 22.57 0.00 41.84 4.09
2027 2128 0.394216 AATGGCATTGGCACGAGCTA 60.394 50.000 15.84 0.00 41.84 3.32
2028 2129 0.179009 ATGGCATTGGCACGAGCTAT 60.179 50.000 15.84 0.00 41.84 2.97
2029 2130 1.096967 TGGCATTGGCACGAGCTATG 61.097 55.000 9.11 9.93 43.71 2.23
2030 2131 1.097547 GGCATTGGCACGAGCTATGT 61.098 55.000 16.61 0.00 43.71 2.29
2031 2132 0.734889 GCATTGGCACGAGCTATGTT 59.265 50.000 16.61 0.00 41.70 2.71
2032 2133 1.532505 GCATTGGCACGAGCTATGTTG 60.533 52.381 16.61 6.98 41.70 3.33
2033 2134 0.734889 ATTGGCACGAGCTATGTTGC 59.265 50.000 4.48 0.00 41.70 4.17
2034 2135 0.605050 TTGGCACGAGCTATGTTGCA 60.605 50.000 4.48 0.00 41.70 4.08
2035 2136 1.298157 TGGCACGAGCTATGTTGCAC 61.298 55.000 4.48 2.04 41.70 4.57
2038 2139 4.494811 CGAGCTATGTTGCACGGA 57.505 55.556 0.00 0.00 41.80 4.69
2039 2140 2.977700 CGAGCTATGTTGCACGGAT 58.022 52.632 0.00 0.00 41.80 4.18
2040 2141 2.134201 CGAGCTATGTTGCACGGATA 57.866 50.000 0.00 0.00 41.80 2.59
2041 2142 1.787155 CGAGCTATGTTGCACGGATAC 59.213 52.381 0.00 0.00 41.80 2.24
2042 2143 2.543861 CGAGCTATGTTGCACGGATACT 60.544 50.000 0.00 0.00 41.80 2.12
2043 2144 3.458189 GAGCTATGTTGCACGGATACTT 58.542 45.455 0.00 0.00 34.99 2.24
2044 2145 3.198068 AGCTATGTTGCACGGATACTTG 58.802 45.455 0.00 0.00 39.23 3.16
2045 2146 2.287915 GCTATGTTGCACGGATACTTGG 59.712 50.000 0.00 0.00 36.11 3.61
2046 2147 2.779755 ATGTTGCACGGATACTTGGA 57.220 45.000 0.00 0.00 36.11 3.53
2047 2148 2.779755 TGTTGCACGGATACTTGGAT 57.220 45.000 0.00 0.00 35.72 3.41
2048 2149 3.897141 TGTTGCACGGATACTTGGATA 57.103 42.857 0.00 0.00 35.72 2.59
2049 2150 3.527533 TGTTGCACGGATACTTGGATAC 58.472 45.455 0.00 0.00 35.72 2.24
2078 2179 2.792374 CGTGATACGGTGATACGCC 58.208 57.895 0.00 0.00 38.08 5.68
2079 2180 0.662374 CGTGATACGGTGATACGCCC 60.662 60.000 0.00 0.00 38.08 6.13
2085 2186 4.546637 GGTGATACGCCCGATACG 57.453 61.111 0.00 0.00 0.00 3.06
2086 2187 1.951510 GGTGATACGCCCGATACGA 59.048 57.895 0.00 0.00 0.00 3.43
2087 2188 0.386478 GGTGATACGCCCGATACGAC 60.386 60.000 0.00 0.00 0.00 4.34
2088 2189 0.308684 GTGATACGCCCGATACGACA 59.691 55.000 0.00 0.00 0.00 4.35
2089 2190 1.023502 TGATACGCCCGATACGACAA 58.976 50.000 0.00 0.00 0.00 3.18
2090 2191 1.610038 TGATACGCCCGATACGACAAT 59.390 47.619 0.00 0.00 0.00 2.71
2091 2192 2.034939 TGATACGCCCGATACGACAATT 59.965 45.455 0.00 0.00 0.00 2.32
2092 2193 2.582728 TACGCCCGATACGACAATTT 57.417 45.000 0.00 0.00 0.00 1.82
2093 2194 1.729284 ACGCCCGATACGACAATTTT 58.271 45.000 0.00 0.00 0.00 1.82
2094 2195 1.662122 ACGCCCGATACGACAATTTTC 59.338 47.619 0.00 0.00 0.00 2.29
2095 2196 1.931172 CGCCCGATACGACAATTTTCT 59.069 47.619 0.00 0.00 0.00 2.52
2096 2197 3.117794 CGCCCGATACGACAATTTTCTA 58.882 45.455 0.00 0.00 0.00 2.10
2097 2198 3.552699 CGCCCGATACGACAATTTTCTAA 59.447 43.478 0.00 0.00 0.00 2.10
2098 2199 4.033129 CGCCCGATACGACAATTTTCTAAA 59.967 41.667 0.00 0.00 0.00 1.85
2099 2200 5.446206 CGCCCGATACGACAATTTTCTAAAA 60.446 40.000 0.00 0.00 0.00 1.52
2100 2201 6.316319 GCCCGATACGACAATTTTCTAAAAA 58.684 36.000 0.00 0.00 0.00 1.94
2101 2202 6.249893 GCCCGATACGACAATTTTCTAAAAAC 59.750 38.462 0.00 0.00 0.00 2.43
2102 2203 7.524065 CCCGATACGACAATTTTCTAAAAACT 58.476 34.615 0.00 0.00 0.00 2.66
2103 2204 8.658609 CCCGATACGACAATTTTCTAAAAACTA 58.341 33.333 0.00 0.00 0.00 2.24
2104 2205 9.685005 CCGATACGACAATTTTCTAAAAACTAG 57.315 33.333 0.00 0.00 0.00 2.57
2105 2206 9.685005 CGATACGACAATTTTCTAAAAACTAGG 57.315 33.333 0.00 0.00 0.00 3.02
2179 2280 8.944212 AAATAACGAGTTTTTGATAGGAAACG 57.056 30.769 0.00 0.00 39.94 3.60
2180 2281 5.996669 AACGAGTTTTTGATAGGAAACGT 57.003 34.783 0.00 0.00 39.94 3.99
2181 2282 8.761575 ATAACGAGTTTTTGATAGGAAACGTA 57.238 30.769 0.00 0.00 39.94 3.57
2182 2283 6.457851 ACGAGTTTTTGATAGGAAACGTAC 57.542 37.500 0.00 0.00 39.94 3.67
2183 2284 6.218746 ACGAGTTTTTGATAGGAAACGTACT 58.781 36.000 0.00 0.00 39.94 2.73
2184 2285 6.145048 ACGAGTTTTTGATAGGAAACGTACTG 59.855 38.462 0.00 0.00 39.94 2.74
2185 2286 6.145048 CGAGTTTTTGATAGGAAACGTACTGT 59.855 38.462 0.00 0.00 39.94 3.55
2186 2287 7.186021 AGTTTTTGATAGGAAACGTACTGTG 57.814 36.000 0.00 0.00 39.94 3.66
2187 2288 6.764560 AGTTTTTGATAGGAAACGTACTGTGT 59.235 34.615 0.00 0.00 39.94 3.72
2188 2289 7.281549 AGTTTTTGATAGGAAACGTACTGTGTT 59.718 33.333 0.00 0.00 39.94 3.32
2189 2290 8.550376 GTTTTTGATAGGAAACGTACTGTGTTA 58.450 33.333 0.00 0.00 0.00 2.41
2190 2291 8.836268 TTTTGATAGGAAACGTACTGTGTTAT 57.164 30.769 0.00 0.00 0.00 1.89
2191 2292 8.836268 TTTGATAGGAAACGTACTGTGTTATT 57.164 30.769 0.00 0.00 0.00 1.40
2192 2293 9.926158 TTTGATAGGAAACGTACTGTGTTATTA 57.074 29.630 0.00 0.00 0.00 0.98
2193 2294 9.926158 TTGATAGGAAACGTACTGTGTTATTAA 57.074 29.630 0.00 0.00 0.00 1.40
2194 2295 9.926158 TGATAGGAAACGTACTGTGTTATTAAA 57.074 29.630 0.00 0.00 0.00 1.52
2197 2298 8.891671 AGGAAACGTACTGTGTTATTAAAGAA 57.108 30.769 0.00 0.00 0.00 2.52
2198 2299 9.328845 AGGAAACGTACTGTGTTATTAAAGAAA 57.671 29.630 0.00 0.00 0.00 2.52
2215 2316 8.519799 TTAAAGAAATTGAAGTCTTCACACCT 57.480 30.769 14.98 7.32 39.87 4.00
2216 2317 9.621629 TTAAAGAAATTGAAGTCTTCACACCTA 57.378 29.630 14.98 0.52 39.87 3.08
2217 2318 7.497925 AAGAAATTGAAGTCTTCACACCTAC 57.502 36.000 14.98 5.43 39.87 3.18
2218 2319 5.696724 AGAAATTGAAGTCTTCACACCTACG 59.303 40.000 14.98 0.00 39.87 3.51
2219 2320 4.602340 ATTGAAGTCTTCACACCTACGT 57.398 40.909 14.98 0.00 39.87 3.57
2220 2321 5.717078 ATTGAAGTCTTCACACCTACGTA 57.283 39.130 14.98 0.00 39.87 3.57
2221 2322 4.494350 TGAAGTCTTCACACCTACGTAC 57.506 45.455 11.36 0.00 34.08 3.67
2222 2323 3.884693 TGAAGTCTTCACACCTACGTACA 59.115 43.478 11.36 0.00 34.08 2.90
2223 2324 4.023450 TGAAGTCTTCACACCTACGTACAG 60.023 45.833 11.36 0.00 34.08 2.74
2224 2325 3.748083 AGTCTTCACACCTACGTACAGA 58.252 45.455 0.00 0.00 0.00 3.41
2225 2326 4.139786 AGTCTTCACACCTACGTACAGAA 58.860 43.478 0.00 0.00 0.00 3.02
2226 2327 4.765856 AGTCTTCACACCTACGTACAGAAT 59.234 41.667 0.00 0.00 0.00 2.40
2227 2328 5.243283 AGTCTTCACACCTACGTACAGAATT 59.757 40.000 0.00 0.00 0.00 2.17
2228 2329 5.345202 GTCTTCACACCTACGTACAGAATTG 59.655 44.000 0.00 0.00 0.00 2.32
2229 2330 4.182693 TCACACCTACGTACAGAATTGG 57.817 45.455 0.00 0.00 0.00 3.16
2230 2331 3.827876 TCACACCTACGTACAGAATTGGA 59.172 43.478 2.12 0.00 0.00 3.53
2231 2332 4.082408 TCACACCTACGTACAGAATTGGAG 60.082 45.833 2.12 0.00 0.00 3.86
2232 2333 4.082408 CACACCTACGTACAGAATTGGAGA 60.082 45.833 2.12 0.00 0.00 3.71
2233 2334 4.158025 ACACCTACGTACAGAATTGGAGAG 59.842 45.833 2.12 0.00 0.00 3.20
2234 2335 3.700038 ACCTACGTACAGAATTGGAGAGG 59.300 47.826 2.12 0.00 0.00 3.69
2235 2336 3.952323 CCTACGTACAGAATTGGAGAGGA 59.048 47.826 0.00 0.00 0.00 3.71
2236 2337 3.870633 ACGTACAGAATTGGAGAGGAC 57.129 47.619 0.00 0.00 0.00 3.85
2237 2338 3.432378 ACGTACAGAATTGGAGAGGACT 58.568 45.455 0.00 0.00 0.00 3.85
2238 2339 3.193691 ACGTACAGAATTGGAGAGGACTG 59.806 47.826 0.00 0.00 0.00 3.51
2239 2340 3.429547 CGTACAGAATTGGAGAGGACTGG 60.430 52.174 0.00 0.00 0.00 4.00
2240 2341 2.907892 ACAGAATTGGAGAGGACTGGA 58.092 47.619 0.00 0.00 0.00 3.86
2241 2342 2.836981 ACAGAATTGGAGAGGACTGGAG 59.163 50.000 0.00 0.00 0.00 3.86
2242 2343 1.836802 AGAATTGGAGAGGACTGGAGC 59.163 52.381 0.00 0.00 0.00 4.70
2243 2344 1.836802 GAATTGGAGAGGACTGGAGCT 59.163 52.381 0.00 0.00 0.00 4.09
2244 2345 1.202330 ATTGGAGAGGACTGGAGCTG 58.798 55.000 0.00 0.00 0.00 4.24
2245 2346 0.115152 TTGGAGAGGACTGGAGCTGA 59.885 55.000 0.00 0.00 0.00 4.26
2246 2347 0.324183 TGGAGAGGACTGGAGCTGAG 60.324 60.000 0.00 0.00 0.00 3.35
2247 2348 0.033601 GGAGAGGACTGGAGCTGAGA 60.034 60.000 0.00 0.00 0.00 3.27
2248 2349 1.618345 GGAGAGGACTGGAGCTGAGAA 60.618 57.143 0.00 0.00 0.00 2.87
2249 2350 2.387757 GAGAGGACTGGAGCTGAGAAT 58.612 52.381 0.00 0.00 0.00 2.40
2250 2351 2.765699 GAGAGGACTGGAGCTGAGAATT 59.234 50.000 0.00 0.00 0.00 2.17
2251 2352 3.180507 AGAGGACTGGAGCTGAGAATTT 58.819 45.455 0.00 0.00 0.00 1.82
2252 2353 3.586618 AGAGGACTGGAGCTGAGAATTTT 59.413 43.478 0.00 0.00 0.00 1.82
2253 2354 4.780021 AGAGGACTGGAGCTGAGAATTTTA 59.220 41.667 0.00 0.00 0.00 1.52
2254 2355 5.428131 AGAGGACTGGAGCTGAGAATTTTAT 59.572 40.000 0.00 0.00 0.00 1.40
2255 2356 5.435291 AGGACTGGAGCTGAGAATTTTATG 58.565 41.667 0.00 0.00 0.00 1.90
2256 2357 4.578105 GGACTGGAGCTGAGAATTTTATGG 59.422 45.833 0.00 0.00 0.00 2.74
2257 2358 5.431765 GACTGGAGCTGAGAATTTTATGGA 58.568 41.667 0.00 0.00 0.00 3.41
2258 2359 5.435291 ACTGGAGCTGAGAATTTTATGGAG 58.565 41.667 0.00 0.00 0.00 3.86
2259 2360 5.190528 ACTGGAGCTGAGAATTTTATGGAGA 59.809 40.000 0.00 0.00 0.00 3.71
2260 2361 5.678583 TGGAGCTGAGAATTTTATGGAGAG 58.321 41.667 0.00 0.00 0.00 3.20
2261 2362 5.190528 TGGAGCTGAGAATTTTATGGAGAGT 59.809 40.000 0.00 0.00 0.00 3.24
2262 2363 6.118852 GGAGCTGAGAATTTTATGGAGAGTT 58.881 40.000 0.00 0.00 0.00 3.01
2263 2364 6.038050 GGAGCTGAGAATTTTATGGAGAGTTG 59.962 42.308 0.00 0.00 0.00 3.16
2264 2365 5.884792 AGCTGAGAATTTTATGGAGAGTTGG 59.115 40.000 0.00 0.00 0.00 3.77
2265 2366 5.882557 GCTGAGAATTTTATGGAGAGTTGGA 59.117 40.000 0.00 0.00 0.00 3.53
2266 2367 6.038050 GCTGAGAATTTTATGGAGAGTTGGAG 59.962 42.308 0.00 0.00 0.00 3.86
2267 2368 7.257790 TGAGAATTTTATGGAGAGTTGGAGA 57.742 36.000 0.00 0.00 0.00 3.71
2268 2369 7.106239 TGAGAATTTTATGGAGAGTTGGAGAC 58.894 38.462 0.00 0.00 0.00 3.36
2269 2370 6.418946 AGAATTTTATGGAGAGTTGGAGACC 58.581 40.000 0.00 0.00 0.00 3.85
2270 2371 6.216456 AGAATTTTATGGAGAGTTGGAGACCT 59.784 38.462 0.00 0.00 0.00 3.85
2271 2372 4.826274 TTTATGGAGAGTTGGAGACCTG 57.174 45.455 0.00 0.00 0.00 4.00
2272 2373 0.908198 ATGGAGAGTTGGAGACCTGC 59.092 55.000 0.00 0.00 0.00 4.85
2273 2374 1.216710 GGAGAGTTGGAGACCTGCG 59.783 63.158 0.00 0.00 0.00 5.18
2274 2375 1.446966 GAGAGTTGGAGACCTGCGC 60.447 63.158 0.00 0.00 0.00 6.09
2275 2376 2.811317 GAGTTGGAGACCTGCGCG 60.811 66.667 0.00 0.00 0.00 6.86
2276 2377 4.379243 AGTTGGAGACCTGCGCGG 62.379 66.667 9.96 9.96 39.35 6.46
2300 2401 2.669569 GCTGCTCGCCTGTTCCAA 60.670 61.111 0.00 0.00 0.00 3.53
2301 2402 2.684843 GCTGCTCGCCTGTTCCAAG 61.685 63.158 0.00 0.00 0.00 3.61
2302 2403 2.032528 TGCTCGCCTGTTCCAAGG 59.967 61.111 0.00 0.00 40.63 3.61
2303 2404 2.347490 GCTCGCCTGTTCCAAGGA 59.653 61.111 0.00 0.00 40.02 3.36
2304 2405 1.743252 GCTCGCCTGTTCCAAGGAG 60.743 63.158 0.00 0.00 40.02 3.69
2305 2406 1.674057 CTCGCCTGTTCCAAGGAGT 59.326 57.895 0.00 0.00 40.02 3.85
2306 2407 0.390472 CTCGCCTGTTCCAAGGAGTC 60.390 60.000 0.00 0.00 40.02 3.36
2307 2408 1.738099 CGCCTGTTCCAAGGAGTCG 60.738 63.158 0.00 0.00 40.02 4.18
2308 2409 1.671742 GCCTGTTCCAAGGAGTCGA 59.328 57.895 0.00 0.00 40.02 4.20
2309 2410 0.390472 GCCTGTTCCAAGGAGTCGAG 60.390 60.000 0.00 0.00 40.02 4.04
2310 2411 0.390472 CCTGTTCCAAGGAGTCGAGC 60.390 60.000 0.00 0.00 40.02 5.03
2311 2412 0.605589 CTGTTCCAAGGAGTCGAGCT 59.394 55.000 0.00 0.00 0.00 4.09
2312 2413 0.318441 TGTTCCAAGGAGTCGAGCTG 59.682 55.000 0.00 0.00 0.00 4.24
2313 2414 0.390472 GTTCCAAGGAGTCGAGCTGG 60.390 60.000 0.00 0.00 0.00 4.85
2314 2415 2.125350 CCAAGGAGTCGAGCTGGC 60.125 66.667 0.00 0.00 0.00 4.85
2315 2416 2.125350 CAAGGAGTCGAGCTGGCC 60.125 66.667 0.00 0.00 0.00 5.36
2316 2417 2.604686 AAGGAGTCGAGCTGGCCA 60.605 61.111 4.71 4.71 0.00 5.36
2317 2418 2.654079 AAGGAGTCGAGCTGGCCAG 61.654 63.158 29.34 29.34 0.00 4.85
2327 2428 4.447734 CTGGCCAGCTGGGAATTT 57.552 55.556 33.46 0.00 40.01 1.82
2328 2429 3.594453 CTGGCCAGCTGGGAATTTA 57.406 52.632 33.46 0.66 40.01 1.40
2329 2430 2.077687 CTGGCCAGCTGGGAATTTAT 57.922 50.000 33.46 0.00 40.01 1.40
2330 2431 1.684983 CTGGCCAGCTGGGAATTTATG 59.315 52.381 33.46 5.65 40.01 1.90
2331 2432 1.287442 TGGCCAGCTGGGAATTTATGA 59.713 47.619 33.46 0.00 40.01 2.15
2332 2433 1.683385 GGCCAGCTGGGAATTTATGAC 59.317 52.381 33.46 12.68 40.01 3.06
2333 2434 1.334869 GCCAGCTGGGAATTTATGACG 59.665 52.381 33.46 4.10 40.01 4.35
2334 2435 2.643551 CCAGCTGGGAATTTATGACGT 58.356 47.619 26.14 0.00 40.01 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.149511 TCATTGATGGAAGGTATTGCGA 57.850 40.909 0.00 0.00 0.00 5.10
17 18 4.790878 CATCATTGATGGAAGGTATTGCG 58.209 43.478 17.31 0.00 36.51 4.85
140 141 1.669760 GCACAAATGGACGGACGGA 60.670 57.895 0.00 0.00 0.00 4.69
142 143 2.474266 CGCACAAATGGACGGACG 59.526 61.111 0.00 0.00 0.00 4.79
162 163 7.765695 ATTTCCACATTTCATAAGTCTGTGT 57.234 32.000 0.00 0.00 36.37 3.72
174 179 9.800433 AAATTTCAACCAAAATTTCCACATTTC 57.200 25.926 0.00 0.00 42.35 2.17
192 197 8.678199 GTTTAACCAACCCAAATCAAATTTCAA 58.322 29.630 0.00 0.00 0.00 2.69
193 198 8.214721 GTTTAACCAACCCAAATCAAATTTCA 57.785 30.769 0.00 0.00 0.00 2.69
211 216 8.303780 AGTCCTATACTAGTTCTGGTTTAACC 57.696 38.462 7.27 7.27 36.36 2.85
231 239 7.749666 ACCACATAATGCAAGAATATAGTCCT 58.250 34.615 0.00 0.00 0.00 3.85
232 240 7.661437 TGACCACATAATGCAAGAATATAGTCC 59.339 37.037 0.00 0.00 0.00 3.85
233 241 8.499162 GTGACCACATAATGCAAGAATATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
234 242 7.445402 GGTGACCACATAATGCAAGAATATAGT 59.555 37.037 0.00 0.00 0.00 2.12
288 296 0.179056 GTACACCACACACTGCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
314 322 4.865629 GGGAGAAAAACCCAGGGG 57.134 61.111 11.37 6.87 46.05 4.79
335 343 4.115516 CGGTATGTCCAAACTCAGATCAG 58.884 47.826 0.00 0.00 35.57 2.90
353 361 1.009078 CGTCAGATACGTGGTCGGTA 58.991 55.000 0.00 0.00 46.72 4.02
354 362 1.798735 CGTCAGATACGTGGTCGGT 59.201 57.895 0.00 0.00 46.72 4.69
379 387 3.695830 AGCGTCAGATACCCTCAAAAA 57.304 42.857 0.00 0.00 0.00 1.94
380 388 3.695830 AAGCGTCAGATACCCTCAAAA 57.304 42.857 0.00 0.00 0.00 2.44
381 389 3.695830 AAAGCGTCAGATACCCTCAAA 57.304 42.857 0.00 0.00 0.00 2.69
382 390 3.334691 CAAAAGCGTCAGATACCCTCAA 58.665 45.455 0.00 0.00 0.00 3.02
383 391 2.354704 CCAAAAGCGTCAGATACCCTCA 60.355 50.000 0.00 0.00 0.00 3.86
384 392 2.280628 CCAAAAGCGTCAGATACCCTC 58.719 52.381 0.00 0.00 0.00 4.30
385 393 1.065418 CCCAAAAGCGTCAGATACCCT 60.065 52.381 0.00 0.00 0.00 4.34
386 394 1.379527 CCCAAAAGCGTCAGATACCC 58.620 55.000 0.00 0.00 0.00 3.69
387 395 1.379527 CCCCAAAAGCGTCAGATACC 58.620 55.000 0.00 0.00 0.00 2.73
388 396 0.733150 GCCCCAAAAGCGTCAGATAC 59.267 55.000 0.00 0.00 0.00 2.24
389 397 0.326595 TGCCCCAAAAGCGTCAGATA 59.673 50.000 0.00 0.00 0.00 1.98
390 398 1.074775 TGCCCCAAAAGCGTCAGAT 59.925 52.632 0.00 0.00 0.00 2.90
391 399 1.896660 GTGCCCCAAAAGCGTCAGA 60.897 57.895 0.00 0.00 0.00 3.27
392 400 2.133742 CTGTGCCCCAAAAGCGTCAG 62.134 60.000 0.00 0.00 0.00 3.51
393 401 2.124109 TGTGCCCCAAAAGCGTCA 60.124 55.556 0.00 0.00 0.00 4.35
394 402 2.644992 CTGTGCCCCAAAAGCGTC 59.355 61.111 0.00 0.00 0.00 5.19
395 403 2.912025 CCTGTGCCCCAAAAGCGT 60.912 61.111 0.00 0.00 0.00 5.07
396 404 3.683937 CCCTGTGCCCCAAAAGCG 61.684 66.667 0.00 0.00 0.00 4.68
397 405 3.313524 CCCCTGTGCCCCAAAAGC 61.314 66.667 0.00 0.00 0.00 3.51
398 406 2.201210 ACCCCTGTGCCCCAAAAG 59.799 61.111 0.00 0.00 0.00 2.27
399 407 2.123077 CACCCCTGTGCCCCAAAA 60.123 61.111 0.00 0.00 35.31 2.44
400 408 3.434179 ACACCCCTGTGCCCCAAA 61.434 61.111 0.00 0.00 46.86 3.28
401 409 4.217210 CACACCCCTGTGCCCCAA 62.217 66.667 0.00 0.00 46.86 4.12
407 415 4.974721 GTGCCCCACACCCCTGTG 62.975 72.222 0.00 0.00 46.60 3.66
416 424 4.974721 CACACCCCTGTGCCCCAC 62.975 72.222 0.00 0.00 46.86 4.61
423 431 2.203294 GAAACCGCACACCCCTGT 60.203 61.111 0.00 0.00 0.00 4.00
424 432 2.113139 AGAAACCGCACACCCCTG 59.887 61.111 0.00 0.00 0.00 4.45
425 433 2.113139 CAGAAACCGCACACCCCT 59.887 61.111 0.00 0.00 0.00 4.79
426 434 2.983592 CCAGAAACCGCACACCCC 60.984 66.667 0.00 0.00 0.00 4.95
427 435 3.670377 GCCAGAAACCGCACACCC 61.670 66.667 0.00 0.00 0.00 4.61
428 436 3.670377 GGCCAGAAACCGCACACC 61.670 66.667 0.00 0.00 0.00 4.16
429 437 4.025401 CGGCCAGAAACCGCACAC 62.025 66.667 2.24 0.00 44.90 3.82
435 443 2.989253 CCCAACCGGCCAGAAACC 60.989 66.667 0.00 0.00 0.00 3.27
436 444 2.989253 CCCCAACCGGCCAGAAAC 60.989 66.667 0.00 0.00 0.00 2.78
437 445 4.293671 CCCCCAACCGGCCAGAAA 62.294 66.667 0.00 0.00 0.00 2.52
444 452 4.856801 CTGATCGCCCCCAACCGG 62.857 72.222 0.00 0.00 0.00 5.28
454 462 1.880340 CGACTTGGAGGCTGATCGC 60.880 63.158 0.00 1.55 38.13 4.58
455 463 1.880340 GCGACTTGGAGGCTGATCG 60.880 63.158 0.00 0.00 0.00 3.69
456 464 1.522580 GGCGACTTGGAGGCTGATC 60.523 63.158 0.00 0.00 0.00 2.92
457 465 2.293318 TGGCGACTTGGAGGCTGAT 61.293 57.895 0.00 0.00 0.00 2.90
458 466 2.922503 TGGCGACTTGGAGGCTGA 60.923 61.111 0.00 0.00 0.00 4.26
459 467 2.738213 AAGTGGCGACTTGGAGGCTG 62.738 60.000 13.79 0.00 41.12 4.85
460 468 2.056906 AAAGTGGCGACTTGGAGGCT 62.057 55.000 15.29 0.00 41.87 4.58
461 469 1.578206 GAAAGTGGCGACTTGGAGGC 61.578 60.000 15.29 0.00 41.87 4.70
462 470 0.955919 GGAAAGTGGCGACTTGGAGG 60.956 60.000 15.29 0.00 41.87 4.30
463 471 0.955919 GGGAAAGTGGCGACTTGGAG 60.956 60.000 15.29 0.00 41.87 3.86
464 472 1.072505 GGGAAAGTGGCGACTTGGA 59.927 57.895 15.29 0.00 41.87 3.53
465 473 2.325082 CGGGAAAGTGGCGACTTGG 61.325 63.158 15.29 1.79 41.87 3.61
466 474 2.325082 CCGGGAAAGTGGCGACTTG 61.325 63.158 15.29 2.39 41.87 3.16
467 475 2.032071 CCGGGAAAGTGGCGACTT 59.968 61.111 8.47 8.47 44.79 3.01
468 476 2.450479 CTTCCGGGAAAGTGGCGACT 62.450 60.000 11.24 0.00 0.00 4.18
469 477 2.031465 TTCCGGGAAAGTGGCGAC 59.969 61.111 7.09 0.00 0.00 5.19
470 478 2.345991 CTTCCGGGAAAGTGGCGA 59.654 61.111 11.24 0.00 0.00 5.54
471 479 3.431725 GCTTCCGGGAAAGTGGCG 61.432 66.667 11.24 0.00 0.00 5.69
472 480 2.034221 AGCTTCCGGGAAAGTGGC 59.966 61.111 11.24 10.51 0.00 5.01
473 481 0.537371 AACAGCTTCCGGGAAAGTGG 60.537 55.000 11.24 0.01 0.00 4.00
474 482 0.593128 CAACAGCTTCCGGGAAAGTG 59.407 55.000 11.24 12.77 0.00 3.16
475 483 0.182775 ACAACAGCTTCCGGGAAAGT 59.817 50.000 11.24 7.10 0.00 2.66
476 484 1.001378 CAACAACAGCTTCCGGGAAAG 60.001 52.381 11.24 0.00 0.00 2.62
477 485 1.028905 CAACAACAGCTTCCGGGAAA 58.971 50.000 11.24 0.00 0.00 3.13
478 486 1.452145 GCAACAACAGCTTCCGGGAA 61.452 55.000 9.52 9.52 0.00 3.97
479 487 1.896660 GCAACAACAGCTTCCGGGA 60.897 57.895 0.00 0.00 0.00 5.14
480 488 1.856265 GAGCAACAACAGCTTCCGGG 61.856 60.000 0.00 0.00 43.58 5.73
481 489 1.576421 GAGCAACAACAGCTTCCGG 59.424 57.895 0.00 0.00 43.58 5.14
482 490 1.576421 GGAGCAACAACAGCTTCCG 59.424 57.895 0.00 0.00 43.58 4.30
484 492 1.000938 CTTGGGAGCAACAACAGCTTC 60.001 52.381 0.00 0.00 43.58 3.86
485 493 1.035139 CTTGGGAGCAACAACAGCTT 58.965 50.000 0.00 0.00 43.58 3.74
486 494 0.106519 ACTTGGGAGCAACAACAGCT 60.107 50.000 0.00 0.00 46.82 4.24
487 495 0.746659 AACTTGGGAGCAACAACAGC 59.253 50.000 0.00 0.00 0.00 4.40
488 496 2.023673 TCAACTTGGGAGCAACAACAG 58.976 47.619 0.00 0.00 0.00 3.16
489 497 2.136298 TCAACTTGGGAGCAACAACA 57.864 45.000 0.00 0.00 0.00 3.33
490 498 2.350772 CGATCAACTTGGGAGCAACAAC 60.351 50.000 0.00 0.00 0.00 3.32
491 499 1.879380 CGATCAACTTGGGAGCAACAA 59.121 47.619 0.00 0.00 0.00 2.83
492 500 1.522668 CGATCAACTTGGGAGCAACA 58.477 50.000 0.00 0.00 0.00 3.33
493 501 0.169009 GCGATCAACTTGGGAGCAAC 59.831 55.000 0.00 0.00 0.00 4.17
494 502 0.036732 AGCGATCAACTTGGGAGCAA 59.963 50.000 0.00 0.00 0.00 3.91
495 503 0.674581 CAGCGATCAACTTGGGAGCA 60.675 55.000 0.00 0.00 0.00 4.26
496 504 1.986575 GCAGCGATCAACTTGGGAGC 61.987 60.000 0.00 0.00 0.00 4.70
497 505 0.674581 TGCAGCGATCAACTTGGGAG 60.675 55.000 0.00 0.00 0.00 4.30
498 506 0.955428 GTGCAGCGATCAACTTGGGA 60.955 55.000 0.00 0.00 0.00 4.37
499 507 1.503542 GTGCAGCGATCAACTTGGG 59.496 57.895 0.00 0.00 0.00 4.12
500 508 1.503542 GGTGCAGCGATCAACTTGG 59.496 57.895 0.00 0.00 0.00 3.61
501 509 1.133253 CGGTGCAGCGATCAACTTG 59.867 57.895 33.24 0.00 0.00 3.16
502 510 2.034879 CCGGTGCAGCGATCAACTT 61.035 57.895 37.48 0.00 0.00 2.66
503 511 2.434884 CCGGTGCAGCGATCAACT 60.435 61.111 37.48 0.00 0.00 3.16
504 512 2.742372 ACCGGTGCAGCGATCAAC 60.742 61.111 37.48 0.00 0.00 3.18
505 513 2.741985 CACCGGTGCAGCGATCAA 60.742 61.111 37.48 0.00 0.00 2.57
532 540 0.792640 GTCGTGTTCAGGCATCAGTG 59.207 55.000 0.00 0.00 0.00 3.66
533 541 0.320771 GGTCGTGTTCAGGCATCAGT 60.321 55.000 0.00 0.00 0.00 3.41
534 542 1.354337 CGGTCGTGTTCAGGCATCAG 61.354 60.000 0.00 0.00 0.00 2.90
535 543 1.374125 CGGTCGTGTTCAGGCATCA 60.374 57.895 0.00 0.00 0.00 3.07
536 544 2.100631 CCGGTCGTGTTCAGGCATC 61.101 63.158 0.00 0.00 0.00 3.91
537 545 2.047274 CCGGTCGTGTTCAGGCAT 60.047 61.111 0.00 0.00 0.00 4.40
538 546 3.228017 TCCGGTCGTGTTCAGGCA 61.228 61.111 0.00 0.00 0.00 4.75
539 547 2.737376 GTCCGGTCGTGTTCAGGC 60.737 66.667 0.00 0.00 0.00 4.85
540 548 1.372997 CAGTCCGGTCGTGTTCAGG 60.373 63.158 0.00 0.00 0.00 3.86
541 549 0.031585 TTCAGTCCGGTCGTGTTCAG 59.968 55.000 0.00 0.00 0.00 3.02
542 550 0.460722 TTTCAGTCCGGTCGTGTTCA 59.539 50.000 0.00 0.00 0.00 3.18
543 551 0.857287 GTTTCAGTCCGGTCGTGTTC 59.143 55.000 0.00 0.00 0.00 3.18
544 552 0.462789 AGTTTCAGTCCGGTCGTGTT 59.537 50.000 0.00 0.00 0.00 3.32
548 556 0.109226 GGAGAGTTTCAGTCCGGTCG 60.109 60.000 0.00 0.00 0.00 4.79
555 563 2.641815 AGCATCTTGGGAGAGTTTCAGT 59.358 45.455 0.00 0.00 34.85 3.41
564 572 0.105039 GGACCGTAGCATCTTGGGAG 59.895 60.000 0.00 0.00 0.00 4.30
577 592 2.783122 ATCGACCAGACCAGGACCGT 62.783 60.000 0.00 0.00 32.93 4.83
593 608 5.853810 ATCGTAGAATTTGATCTGTCGATCG 59.146 40.000 9.36 9.36 44.72 3.69
596 611 4.740205 GCATCGTAGAATTTGATCTGTCGA 59.260 41.667 0.00 8.13 43.58 4.20
600 615 4.510711 AGCAGCATCGTAGAATTTGATCTG 59.489 41.667 0.00 0.00 43.58 2.90
655 670 5.609423 ACAGATTAAATGTGCCTGCAAAAA 58.391 33.333 0.00 0.00 0.00 1.94
656 671 5.212532 ACAGATTAAATGTGCCTGCAAAA 57.787 34.783 0.00 0.00 0.00 2.44
657 672 4.870123 ACAGATTAAATGTGCCTGCAAA 57.130 36.364 0.00 0.00 0.00 3.68
658 673 4.280425 TGAACAGATTAAATGTGCCTGCAA 59.720 37.500 0.00 0.00 0.00 4.08
659 674 3.825585 TGAACAGATTAAATGTGCCTGCA 59.174 39.130 0.00 0.00 0.00 4.41
660 675 4.418392 CTGAACAGATTAAATGTGCCTGC 58.582 43.478 0.00 0.00 0.00 4.85
661 676 4.082625 TGCTGAACAGATTAAATGTGCCTG 60.083 41.667 5.97 0.00 0.00 4.85
662 677 4.081406 TGCTGAACAGATTAAATGTGCCT 58.919 39.130 5.97 0.00 0.00 4.75
663 678 4.439305 TGCTGAACAGATTAAATGTGCC 57.561 40.909 5.97 0.00 0.00 5.01
664 679 5.464168 AGTTGCTGAACAGATTAAATGTGC 58.536 37.500 5.97 0.00 34.17 4.57
665 680 6.671190 TGAGTTGCTGAACAGATTAAATGTG 58.329 36.000 5.97 0.00 34.17 3.21
666 681 6.712095 TCTGAGTTGCTGAACAGATTAAATGT 59.288 34.615 5.97 0.00 35.01 2.71
667 682 7.137490 TCTGAGTTGCTGAACAGATTAAATG 57.863 36.000 5.97 0.00 35.01 2.32
668 683 7.750229 TTCTGAGTTGCTGAACAGATTAAAT 57.250 32.000 5.97 0.00 38.79 1.40
669 684 7.566760 TTTCTGAGTTGCTGAACAGATTAAA 57.433 32.000 5.97 0.00 38.79 1.52
670 685 7.566760 TTTTCTGAGTTGCTGAACAGATTAA 57.433 32.000 5.97 0.00 38.79 1.40
671 686 7.750229 ATTTTCTGAGTTGCTGAACAGATTA 57.250 32.000 5.97 0.00 38.79 1.75
672 687 6.645790 ATTTTCTGAGTTGCTGAACAGATT 57.354 33.333 5.97 0.00 38.79 2.40
673 688 6.645790 AATTTTCTGAGTTGCTGAACAGAT 57.354 33.333 5.97 0.00 38.79 2.90
674 689 7.750229 ATAATTTTCTGAGTTGCTGAACAGA 57.250 32.000 5.97 0.00 37.56 3.41
675 690 7.269937 CGAATAATTTTCTGAGTTGCTGAACAG 59.730 37.037 0.00 0.00 34.67 3.16
676 691 7.077605 CGAATAATTTTCTGAGTTGCTGAACA 58.922 34.615 0.00 0.00 34.67 3.18
677 692 6.524586 CCGAATAATTTTCTGAGTTGCTGAAC 59.475 38.462 0.00 0.00 34.67 3.18
678 693 6.349280 CCCGAATAATTTTCTGAGTTGCTGAA 60.349 38.462 0.00 0.00 33.31 3.02
679 694 5.123820 CCCGAATAATTTTCTGAGTTGCTGA 59.876 40.000 0.00 0.00 0.00 4.26
680 695 5.335127 CCCGAATAATTTTCTGAGTTGCTG 58.665 41.667 0.00 0.00 0.00 4.41
681 696 4.142381 GCCCGAATAATTTTCTGAGTTGCT 60.142 41.667 0.00 0.00 0.00 3.91
682 697 4.105486 GCCCGAATAATTTTCTGAGTTGC 58.895 43.478 0.00 0.00 0.00 4.17
683 698 4.672409 GGCCCGAATAATTTTCTGAGTTG 58.328 43.478 0.00 0.00 0.00 3.16
684 699 3.377172 CGGCCCGAATAATTTTCTGAGTT 59.623 43.478 0.00 0.00 0.00 3.01
685 700 2.943033 CGGCCCGAATAATTTTCTGAGT 59.057 45.455 0.00 0.00 0.00 3.41
686 701 2.287009 GCGGCCCGAATAATTTTCTGAG 60.287 50.000 7.68 0.00 0.00 3.35
687 702 1.673920 GCGGCCCGAATAATTTTCTGA 59.326 47.619 7.68 0.00 0.00 3.27
688 703 1.269051 GGCGGCCCGAATAATTTTCTG 60.269 52.381 7.68 0.00 0.00 3.02
689 704 1.029681 GGCGGCCCGAATAATTTTCT 58.970 50.000 7.68 0.00 0.00 2.52
690 705 1.029681 AGGCGGCCCGAATAATTTTC 58.970 50.000 17.02 0.00 35.76 2.29
691 706 1.480789 AAGGCGGCCCGAATAATTTT 58.519 45.000 17.02 0.00 35.76 1.82
692 707 2.351706 TAAGGCGGCCCGAATAATTT 57.648 45.000 17.02 3.08 35.76 1.82
693 708 2.351706 TTAAGGCGGCCCGAATAATT 57.648 45.000 17.02 3.88 35.76 1.40
694 709 1.951602 GTTTAAGGCGGCCCGAATAAT 59.048 47.619 17.02 0.00 35.76 1.28
695 710 1.381522 GTTTAAGGCGGCCCGAATAA 58.618 50.000 17.02 7.67 35.76 1.40
696 711 0.810823 CGTTTAAGGCGGCCCGAATA 60.811 55.000 17.02 1.16 35.76 1.75
697 712 2.110352 CGTTTAAGGCGGCCCGAAT 61.110 57.895 17.02 2.22 35.76 3.34
698 713 2.743149 CGTTTAAGGCGGCCCGAA 60.743 61.111 17.02 7.29 35.76 4.30
761 784 9.790344 GGGTCTATTCTATACTCTGTTGTAGTA 57.210 37.037 0.00 0.00 34.11 1.82
764 787 6.713903 CCGGGTCTATTCTATACTCTGTTGTA 59.286 42.308 0.00 0.00 0.00 2.41
767 790 5.703310 ACCGGGTCTATTCTATACTCTGTT 58.297 41.667 6.32 0.00 0.00 3.16
773 796 2.751806 CCGGACCGGGTCTATTCTATAC 59.248 54.545 26.15 5.75 44.15 1.47
800 823 2.034812 TGCATGGTTAACCGTCAAAACC 59.965 45.455 16.78 2.53 42.49 3.27
823 846 0.583438 CAGTGCGTATGCTGGTATGC 59.417 55.000 8.69 0.00 43.34 3.14
824 847 2.223537 TCAGTGCGTATGCTGGTATG 57.776 50.000 8.69 0.40 43.34 2.39
825 848 2.093711 TGTTCAGTGCGTATGCTGGTAT 60.094 45.455 8.69 0.00 43.34 2.73
826 849 1.273886 TGTTCAGTGCGTATGCTGGTA 59.726 47.619 8.69 0.00 43.34 3.25
827 850 0.034756 TGTTCAGTGCGTATGCTGGT 59.965 50.000 8.69 0.00 43.34 4.00
828 851 1.129251 CTTGTTCAGTGCGTATGCTGG 59.871 52.381 8.69 0.00 43.34 4.85
830 853 0.798776 GCTTGTTCAGTGCGTATGCT 59.201 50.000 8.69 0.00 43.34 3.79
831 854 0.516877 TGCTTGTTCAGTGCGTATGC 59.483 50.000 0.00 0.00 43.20 3.14
832 855 1.800586 ACTGCTTGTTCAGTGCGTATG 59.199 47.619 0.00 0.00 44.88 2.39
833 856 2.169832 ACTGCTTGTTCAGTGCGTAT 57.830 45.000 0.00 0.00 44.88 3.06
834 857 2.804697 TACTGCTTGTTCAGTGCGTA 57.195 45.000 6.67 0.00 45.95 4.42
835 858 2.169832 ATACTGCTTGTTCAGTGCGT 57.830 45.000 6.67 0.00 45.95 5.24
836 859 4.661993 TTTATACTGCTTGTTCAGTGCG 57.338 40.909 6.67 0.00 45.95 5.34
837 860 4.846137 CGTTTTATACTGCTTGTTCAGTGC 59.154 41.667 6.67 0.00 45.95 4.40
840 863 5.671329 GCTCCGTTTTATACTGCTTGTTCAG 60.671 44.000 0.00 0.00 39.86 3.02
841 864 4.153475 GCTCCGTTTTATACTGCTTGTTCA 59.847 41.667 0.00 0.00 0.00 3.18
842 865 4.436986 GGCTCCGTTTTATACTGCTTGTTC 60.437 45.833 0.00 0.00 0.00 3.18
849 872 3.248602 GCTCATGGCTCCGTTTTATACTG 59.751 47.826 0.00 0.00 38.06 2.74
851 874 3.879932 GCTCATGGCTCCGTTTTATAC 57.120 47.619 0.00 0.00 38.06 1.47
863 886 4.925861 GAGGGGCGAGCTCATGGC 62.926 72.222 15.40 10.55 42.19 4.40
877 900 4.748144 GCTGCTTGGTGGGGGAGG 62.748 72.222 0.00 0.00 0.00 4.30
882 905 3.850098 AACTCGGCTGCTTGGTGGG 62.850 63.158 0.00 0.00 0.00 4.61
883 906 2.281761 AACTCGGCTGCTTGGTGG 60.282 61.111 0.00 0.00 0.00 4.61
890 913 1.905922 GAGCACTTGAACTCGGCTGC 61.906 60.000 0.00 0.00 34.44 5.25
891 914 2.157421 GAGCACTTGAACTCGGCTG 58.843 57.895 0.00 0.00 34.44 4.85
892 915 4.683432 GAGCACTTGAACTCGGCT 57.317 55.556 0.00 0.00 37.56 5.52
896 919 2.866762 AGAAACACGAGCACTTGAACTC 59.133 45.455 0.00 0.00 0.00 3.01
897 920 2.866762 GAGAAACACGAGCACTTGAACT 59.133 45.455 0.00 0.00 0.00 3.01
898 921 2.032808 GGAGAAACACGAGCACTTGAAC 60.033 50.000 0.00 0.00 0.00 3.18
899 922 2.210116 GGAGAAACACGAGCACTTGAA 58.790 47.619 0.00 0.00 0.00 2.69
900 923 1.138069 TGGAGAAACACGAGCACTTGA 59.862 47.619 0.00 0.00 0.00 3.02
901 924 1.261619 GTGGAGAAACACGAGCACTTG 59.738 52.381 0.00 0.00 0.00 3.16
902 925 1.583054 GTGGAGAAACACGAGCACTT 58.417 50.000 0.00 0.00 0.00 3.16
903 926 0.249911 GGTGGAGAAACACGAGCACT 60.250 55.000 0.00 0.00 42.23 4.40
905 928 0.249868 CAGGTGGAGAAACACGAGCA 60.250 55.000 0.00 0.00 42.23 4.26
906 929 1.569479 GCAGGTGGAGAAACACGAGC 61.569 60.000 0.00 0.00 42.23 5.03
907 930 0.034059 AGCAGGTGGAGAAACACGAG 59.966 55.000 0.00 0.00 42.23 4.18
908 931 0.249868 CAGCAGGTGGAGAAACACGA 60.250 55.000 0.00 0.00 42.23 4.35
909 932 0.532862 ACAGCAGGTGGAGAAACACG 60.533 55.000 4.26 0.00 42.23 4.49
910 933 1.230324 GACAGCAGGTGGAGAAACAC 58.770 55.000 4.26 0.00 40.60 3.32
912 935 1.230324 GTGACAGCAGGTGGAGAAAC 58.770 55.000 4.26 0.00 0.00 2.78
913 936 0.108585 GGTGACAGCAGGTGGAGAAA 59.891 55.000 4.26 0.00 0.00 2.52
915 938 2.217038 GGGTGACAGCAGGTGGAGA 61.217 63.158 7.01 0.00 0.00 3.71
917 940 1.157513 TAGGGTGACAGCAGGTGGA 59.842 57.895 7.01 0.00 0.00 4.02
918 941 1.194781 AGTAGGGTGACAGCAGGTGG 61.195 60.000 7.01 0.00 0.00 4.61
919 942 0.247736 GAGTAGGGTGACAGCAGGTG 59.752 60.000 7.01 0.00 0.00 4.00
920 943 0.178932 TGAGTAGGGTGACAGCAGGT 60.179 55.000 7.01 0.00 0.00 4.00
922 945 1.620819 AGTTGAGTAGGGTGACAGCAG 59.379 52.381 7.01 0.00 0.00 4.24
923 946 1.344438 CAGTTGAGTAGGGTGACAGCA 59.656 52.381 7.01 0.00 0.00 4.41
924 947 1.338200 CCAGTTGAGTAGGGTGACAGC 60.338 57.143 0.00 0.00 0.00 4.40
925 948 1.338200 GCCAGTTGAGTAGGGTGACAG 60.338 57.143 0.00 0.00 0.00 3.51
928 959 1.347707 CTTGCCAGTTGAGTAGGGTGA 59.652 52.381 0.00 0.00 0.00 4.02
929 960 1.813513 CTTGCCAGTTGAGTAGGGTG 58.186 55.000 0.00 0.00 0.00 4.61
931 962 1.021390 CGCTTGCCAGTTGAGTAGGG 61.021 60.000 0.00 0.00 0.00 3.53
933 964 1.639298 GCCGCTTGCCAGTTGAGTAG 61.639 60.000 0.00 0.00 0.00 2.57
935 966 2.980233 GCCGCTTGCCAGTTGAGT 60.980 61.111 0.00 0.00 0.00 3.41
941 972 2.049802 CAACTTGCCGCTTGCCAG 60.050 61.111 0.00 0.00 40.16 4.85
942 973 4.283403 GCAACTTGCCGCTTGCCA 62.283 61.111 1.95 0.00 37.42 4.92
978 1015 2.930826 TCCTTGGGCGGATTTCTATC 57.069 50.000 0.00 0.00 0.00 2.08
979 1016 3.662759 TTTCCTTGGGCGGATTTCTAT 57.337 42.857 0.00 0.00 32.02 1.98
989 1026 1.215382 GACGCCATTTTCCTTGGGC 59.785 57.895 0.00 0.00 42.98 5.36
997 1034 3.784412 CGCCGTCGACGCCATTTT 61.784 61.111 31.73 0.00 38.10 1.82
1009 1046 2.487532 CCCTCGTTATCCTCGCCGT 61.488 63.158 0.00 0.00 0.00 5.68
1013 1050 2.335369 CGGCCCTCGTTATCCTCG 59.665 66.667 0.00 0.00 0.00 4.63
1014 1051 2.029221 GCGGCCCTCGTTATCCTC 59.971 66.667 0.00 0.00 41.72 3.71
1047 1084 2.094539 CACTGCATCAACGCGACG 59.905 61.111 15.93 2.43 33.35 5.12
1049 1086 2.357396 AGCACTGCATCAACGCGA 60.357 55.556 15.93 0.00 33.35 5.87
1095 1132 4.011517 TCAACGCCGTCCCCTTCC 62.012 66.667 0.00 0.00 0.00 3.46
1252 1289 3.407083 TATTGCCAGCCAGCCGGA 61.407 61.111 5.05 0.00 0.00 5.14
1258 1299 1.078497 CGAGGTGTATTGCCAGCCA 60.078 57.895 0.00 0.00 33.34 4.75
1268 1309 0.830444 ACAGCCAGGTTCGAGGTGTA 60.830 55.000 4.82 0.00 0.00 2.90
1270 1311 1.669115 CACAGCCAGGTTCGAGGTG 60.669 63.158 0.00 0.00 0.00 4.00
1271 1312 2.743718 CACAGCCAGGTTCGAGGT 59.256 61.111 0.00 0.00 0.00 3.85
1291 1332 3.667282 GAGCTATACGGCGGGCGA 61.667 66.667 31.03 14.28 37.29 5.54
1292 1333 4.719369 GGAGCTATACGGCGGGCG 62.719 72.222 23.00 23.00 37.29 6.13
1293 1334 3.284133 GAGGAGCTATACGGCGGGC 62.284 68.421 13.24 10.02 37.29 6.13
1294 1335 2.637383 GGAGGAGCTATACGGCGGG 61.637 68.421 13.24 0.00 37.29 6.13
1295 1336 2.637383 GGGAGGAGCTATACGGCGG 61.637 68.421 13.24 0.00 37.29 6.13
1296 1337 2.963371 GGGAGGAGCTATACGGCG 59.037 66.667 4.80 4.80 37.29 6.46
1297 1338 1.602888 TCGGGAGGAGCTATACGGC 60.603 63.158 0.00 0.00 0.00 5.68
1298 1339 1.575576 CGTCGGGAGGAGCTATACGG 61.576 65.000 0.00 0.00 0.00 4.02
1299 1340 0.883814 ACGTCGGGAGGAGCTATACG 60.884 60.000 0.00 0.00 35.17 3.06
1300 1341 1.001597 CAACGTCGGGAGGAGCTATAC 60.002 57.143 0.00 0.00 0.00 1.47
1301 1342 1.134007 TCAACGTCGGGAGGAGCTATA 60.134 52.381 0.00 0.00 0.00 1.31
1302 1343 0.395311 TCAACGTCGGGAGGAGCTAT 60.395 55.000 0.00 0.00 0.00 2.97
1303 1344 1.001764 TCAACGTCGGGAGGAGCTA 60.002 57.895 0.00 0.00 0.00 3.32
1304 1345 2.282958 TCAACGTCGGGAGGAGCT 60.283 61.111 0.00 0.00 0.00 4.09
1305 1346 2.126031 GTCAACGTCGGGAGGAGC 60.126 66.667 0.00 0.00 0.00 4.70
1306 1347 0.388649 CTTGTCAACGTCGGGAGGAG 60.389 60.000 0.00 0.00 0.00 3.69
1307 1348 1.663739 CTTGTCAACGTCGGGAGGA 59.336 57.895 0.00 0.00 0.00 3.71
1308 1349 2.027625 GCTTGTCAACGTCGGGAGG 61.028 63.158 0.00 0.00 0.00 4.30
1309 1350 0.600255 AAGCTTGTCAACGTCGGGAG 60.600 55.000 0.00 0.00 0.00 4.30
1310 1351 0.878523 CAAGCTTGTCAACGTCGGGA 60.879 55.000 18.65 0.00 0.00 5.14
1311 1352 1.157870 ACAAGCTTGTCAACGTCGGG 61.158 55.000 26.36 0.00 36.50 5.14
1312 1353 0.655733 AACAAGCTTGTCAACGTCGG 59.344 50.000 31.20 1.88 41.31 4.79
1313 1354 2.452006 AAACAAGCTTGTCAACGTCG 57.548 45.000 31.20 2.67 41.31 5.12
1317 1358 7.141363 ACATCAATCTAAACAAGCTTGTCAAC 58.859 34.615 31.20 0.00 41.31 3.18
1324 1365 6.204688 TGAACGAACATCAATCTAAACAAGCT 59.795 34.615 0.00 0.00 0.00 3.74
1331 1372 6.961359 ACGAATGAACGAACATCAATCTAA 57.039 33.333 0.00 0.00 37.03 2.10
1341 1382 2.571206 GGAGCAAACGAATGAACGAAC 58.429 47.619 0.00 0.00 37.03 3.95
1353 1394 0.379316 ACAAACGAACGGGAGCAAAC 59.621 50.000 0.00 0.00 0.00 2.93
1376 1418 0.520404 TCTTAGACGCGAGGTGTCAC 59.480 55.000 15.93 0.00 44.42 3.67
1377 1419 0.803117 CTCTTAGACGCGAGGTGTCA 59.197 55.000 15.93 0.00 44.42 3.58
1378 1420 0.523757 GCTCTTAGACGCGAGGTGTC 60.524 60.000 15.93 0.00 42.60 3.67
1379 1421 0.961358 AGCTCTTAGACGCGAGGTGT 60.961 55.000 15.93 0.00 36.70 4.16
1380 1422 0.248296 GAGCTCTTAGACGCGAGGTG 60.248 60.000 15.93 0.00 38.04 4.00
1381 1423 0.393267 AGAGCTCTTAGACGCGAGGT 60.393 55.000 15.93 3.24 40.36 3.85
1382 1424 0.306533 GAGAGCTCTTAGACGCGAGG 59.693 60.000 19.36 0.00 0.00 4.63
1383 1425 1.010580 TGAGAGCTCTTAGACGCGAG 58.989 55.000 19.36 0.00 0.00 5.03
1384 1426 1.332065 CATGAGAGCTCTTAGACGCGA 59.668 52.381 19.36 0.00 0.00 5.87
1385 1427 1.752753 CATGAGAGCTCTTAGACGCG 58.247 55.000 19.36 3.53 0.00 6.01
1386 1428 1.486439 GCATGAGAGCTCTTAGACGC 58.514 55.000 19.36 13.87 0.00 5.19
1387 1429 1.332065 TCGCATGAGAGCTCTTAGACG 59.668 52.381 19.36 20.00 0.00 4.18
1388 1430 3.428746 TTCGCATGAGAGCTCTTAGAC 57.571 47.619 19.36 8.98 0.00 2.59
1389 1431 4.456280 TTTTCGCATGAGAGCTCTTAGA 57.544 40.909 19.36 10.18 0.00 2.10
1390 1432 4.085158 CGATTTTCGCATGAGAGCTCTTAG 60.085 45.833 19.36 11.83 31.14 2.18
1391 1433 3.798878 CGATTTTCGCATGAGAGCTCTTA 59.201 43.478 19.36 15.09 31.14 2.10
1400 1442 0.107703 AGGCTCCGATTTTCGCATGA 60.108 50.000 0.00 0.00 38.82 3.07
1621 1700 2.205022 TGGCAAAGAGATGACCTTGG 57.795 50.000 0.00 0.00 0.00 3.61
1638 1717 0.108329 AGTTACCAACGGCGAGATGG 60.108 55.000 16.62 20.54 46.99 3.51
1686 1770 1.179152 TCACGCTGTCCGAGGAATTA 58.821 50.000 0.00 0.00 41.02 1.40
1737 1826 7.692908 ACATAAACGTTGAATGGAAAAGTTG 57.307 32.000 21.38 2.42 31.11 3.16
1779 1870 4.992381 AAAGAACTTGACTGCGTACATC 57.008 40.909 0.00 0.00 0.00 3.06
1814 1905 0.037605 GGGTTGAGACGTGTAGGGTG 60.038 60.000 0.00 0.00 0.00 4.61
1844 1944 1.666888 GGTTTCAGGTCTTTGCATGCG 60.667 52.381 14.09 0.00 0.00 4.73
1852 1952 7.342026 ACAAGACATAAAAAGGTTTCAGGTCTT 59.658 33.333 9.51 9.51 39.51 3.01
1870 1970 4.283722 ACGAAGGAGTAGGAAACAAGACAT 59.716 41.667 0.00 0.00 0.00 3.06
1985 2086 7.852971 TTAATAAAGTGGCTAGCATAAACGT 57.147 32.000 18.24 4.49 0.00 3.99
2002 2103 4.736168 GCTCGTGCCAATGCCATTAATAAA 60.736 41.667 0.00 0.00 36.33 1.40
2008 2109 0.394216 TAGCTCGTGCCAATGCCATT 60.394 50.000 5.73 0.00 40.80 3.16
2009 2110 0.179009 ATAGCTCGTGCCAATGCCAT 60.179 50.000 5.73 0.00 40.80 4.40
2025 2126 3.792401 TCCAAGTATCCGTGCAACATAG 58.208 45.455 0.00 0.00 35.74 2.23
2026 2127 3.897141 TCCAAGTATCCGTGCAACATA 57.103 42.857 0.00 0.00 35.74 2.29
2027 2128 2.779755 TCCAAGTATCCGTGCAACAT 57.220 45.000 0.00 0.00 35.74 2.71
2028 2129 2.779755 ATCCAAGTATCCGTGCAACA 57.220 45.000 0.00 0.00 35.74 3.33
2029 2130 3.527533 TGTATCCAAGTATCCGTGCAAC 58.472 45.455 0.00 0.00 0.00 4.17
2030 2131 3.897141 TGTATCCAAGTATCCGTGCAA 57.103 42.857 0.00 0.00 0.00 4.08
2031 2132 5.621329 CGATATGTATCCAAGTATCCGTGCA 60.621 44.000 0.00 0.00 0.00 4.57
2032 2133 4.798907 CGATATGTATCCAAGTATCCGTGC 59.201 45.833 0.00 0.00 0.00 5.34
2033 2134 5.124936 TCCGATATGTATCCAAGTATCCGTG 59.875 44.000 0.00 0.00 0.00 4.94
2034 2135 5.258841 TCCGATATGTATCCAAGTATCCGT 58.741 41.667 0.00 0.00 0.00 4.69
2035 2136 5.830000 TCCGATATGTATCCAAGTATCCG 57.170 43.478 0.00 0.00 0.00 4.18
2036 2137 7.013083 ACGTATCCGATATGTATCCAAGTATCC 59.987 40.741 10.96 0.00 37.88 2.59
2037 2138 7.856398 CACGTATCCGATATGTATCCAAGTATC 59.144 40.741 12.06 0.00 37.88 2.24
2038 2139 7.555195 TCACGTATCCGATATGTATCCAAGTAT 59.445 37.037 12.06 0.00 37.88 2.12
2039 2140 6.880529 TCACGTATCCGATATGTATCCAAGTA 59.119 38.462 12.06 0.00 37.88 2.24
2040 2141 5.708697 TCACGTATCCGATATGTATCCAAGT 59.291 40.000 12.06 0.00 37.88 3.16
2041 2142 6.190954 TCACGTATCCGATATGTATCCAAG 57.809 41.667 12.06 1.30 37.88 3.61
2042 2143 6.769134 ATCACGTATCCGATATGTATCCAA 57.231 37.500 12.06 0.00 37.88 3.53
2043 2144 6.018507 CGTATCACGTATCCGATATGTATCCA 60.019 42.308 12.06 0.00 36.74 3.41
2044 2145 6.361114 CGTATCACGTATCCGATATGTATCC 58.639 44.000 12.06 2.34 36.74 2.59
2045 2146 6.018425 ACCGTATCACGTATCCGATATGTATC 60.018 42.308 12.06 4.22 40.58 2.24
2046 2147 5.819379 ACCGTATCACGTATCCGATATGTAT 59.181 40.000 12.06 9.24 40.58 2.29
2047 2148 5.063817 CACCGTATCACGTATCCGATATGTA 59.936 44.000 12.06 3.61 40.58 2.29
2048 2149 4.005650 ACCGTATCACGTATCCGATATGT 58.994 43.478 7.35 7.35 40.58 2.29
2049 2150 4.093850 TCACCGTATCACGTATCCGATATG 59.906 45.833 6.13 6.13 40.58 1.78
2050 2151 4.256110 TCACCGTATCACGTATCCGATAT 58.744 43.478 0.00 0.00 40.58 1.63
2051 2152 3.663025 TCACCGTATCACGTATCCGATA 58.337 45.455 0.00 0.00 40.58 2.92
2052 2153 2.497138 TCACCGTATCACGTATCCGAT 58.503 47.619 0.00 0.00 40.58 4.18
2053 2154 1.952193 TCACCGTATCACGTATCCGA 58.048 50.000 0.00 0.00 40.58 4.55
2054 2155 2.983402 ATCACCGTATCACGTATCCG 57.017 50.000 0.00 0.00 40.58 4.18
2055 2156 3.740590 CGTATCACCGTATCACGTATCC 58.259 50.000 0.00 0.00 40.58 2.59
2056 2157 3.159026 GCGTATCACCGTATCACGTATC 58.841 50.000 0.00 0.00 40.58 2.24
2057 2158 2.095567 GGCGTATCACCGTATCACGTAT 60.096 50.000 0.00 0.00 40.58 3.06
2058 2159 1.264020 GGCGTATCACCGTATCACGTA 59.736 52.381 0.00 0.00 40.58 3.57
2059 2160 0.029834 GGCGTATCACCGTATCACGT 59.970 55.000 0.00 0.00 40.58 4.49
2060 2161 0.662374 GGGCGTATCACCGTATCACG 60.662 60.000 0.00 0.00 42.11 4.35
2061 2162 0.662374 CGGGCGTATCACCGTATCAC 60.662 60.000 0.00 0.00 44.85 3.06
2062 2163 1.655885 CGGGCGTATCACCGTATCA 59.344 57.895 0.00 0.00 44.85 2.15
2063 2164 4.546637 CGGGCGTATCACCGTATC 57.453 61.111 0.00 0.00 44.85 2.24
2068 2169 0.386478 GTCGTATCGGGCGTATCACC 60.386 60.000 0.00 0.00 0.00 4.02
2069 2170 0.308684 TGTCGTATCGGGCGTATCAC 59.691 55.000 0.00 0.00 0.00 3.06
2070 2171 1.023502 TTGTCGTATCGGGCGTATCA 58.976 50.000 0.00 0.00 0.00 2.15
2071 2172 2.342910 ATTGTCGTATCGGGCGTATC 57.657 50.000 0.00 0.00 0.00 2.24
2072 2173 2.806608 AATTGTCGTATCGGGCGTAT 57.193 45.000 0.00 0.00 0.00 3.06
2073 2174 2.582728 AAATTGTCGTATCGGGCGTA 57.417 45.000 0.00 0.00 0.00 4.42
2074 2175 1.662122 GAAAATTGTCGTATCGGGCGT 59.338 47.619 0.00 0.00 0.00 5.68
2075 2176 1.931172 AGAAAATTGTCGTATCGGGCG 59.069 47.619 0.00 0.00 0.00 6.13
2076 2177 5.473796 TTTAGAAAATTGTCGTATCGGGC 57.526 39.130 0.00 0.00 0.00 6.13
2077 2178 7.524065 AGTTTTTAGAAAATTGTCGTATCGGG 58.476 34.615 0.00 0.00 0.00 5.14
2078 2179 9.685005 CTAGTTTTTAGAAAATTGTCGTATCGG 57.315 33.333 0.00 0.00 0.00 4.18
2079 2180 9.685005 CCTAGTTTTTAGAAAATTGTCGTATCG 57.315 33.333 0.00 0.00 0.00 2.92
2153 2254 9.389570 CGTTTCCTATCAAAAACTCGTTATTTT 57.610 29.630 0.00 0.00 34.06 1.82
2154 2255 8.562052 ACGTTTCCTATCAAAAACTCGTTATTT 58.438 29.630 0.00 0.00 34.06 1.40
2155 2256 8.091385 ACGTTTCCTATCAAAAACTCGTTATT 57.909 30.769 0.00 0.00 34.06 1.40
2156 2257 7.662604 ACGTTTCCTATCAAAAACTCGTTAT 57.337 32.000 0.00 0.00 34.06 1.89
2157 2258 7.867403 AGTACGTTTCCTATCAAAAACTCGTTA 59.133 33.333 0.00 0.00 34.06 3.18
2158 2259 5.996669 ACGTTTCCTATCAAAAACTCGTT 57.003 34.783 0.00 0.00 34.06 3.85
2159 2260 6.145048 CAGTACGTTTCCTATCAAAAACTCGT 59.855 38.462 0.00 0.00 34.06 4.18
2160 2261 6.145048 ACAGTACGTTTCCTATCAAAAACTCG 59.855 38.462 0.00 0.00 34.06 4.18
2161 2262 7.042254 ACACAGTACGTTTCCTATCAAAAACTC 60.042 37.037 0.00 0.00 34.06 3.01
2162 2263 6.764560 ACACAGTACGTTTCCTATCAAAAACT 59.235 34.615 0.00 0.00 34.06 2.66
2163 2264 6.951643 ACACAGTACGTTTCCTATCAAAAAC 58.048 36.000 0.00 0.00 33.12 2.43
2164 2265 7.556733 AACACAGTACGTTTCCTATCAAAAA 57.443 32.000 0.00 0.00 0.00 1.94
2165 2266 8.836268 ATAACACAGTACGTTTCCTATCAAAA 57.164 30.769 0.00 0.00 0.00 2.44
2166 2267 8.836268 AATAACACAGTACGTTTCCTATCAAA 57.164 30.769 0.00 0.00 0.00 2.69
2167 2268 9.926158 TTAATAACACAGTACGTTTCCTATCAA 57.074 29.630 0.00 0.00 0.00 2.57
2168 2269 9.926158 TTTAATAACACAGTACGTTTCCTATCA 57.074 29.630 0.00 0.00 0.00 2.15
2171 2272 9.979578 TTCTTTAATAACACAGTACGTTTCCTA 57.020 29.630 0.00 0.00 0.00 2.94
2172 2273 8.891671 TTCTTTAATAACACAGTACGTTTCCT 57.108 30.769 0.00 0.00 0.00 3.36
2189 2290 9.136323 AGGTGTGAAGACTTCAATTTCTTTAAT 57.864 29.630 19.32 0.00 42.15 1.40
2190 2291 8.519799 AGGTGTGAAGACTTCAATTTCTTTAA 57.480 30.769 19.32 0.00 42.15 1.52
2191 2292 9.052759 GTAGGTGTGAAGACTTCAATTTCTTTA 57.947 33.333 19.32 4.22 42.15 1.85
2192 2293 7.254795 CGTAGGTGTGAAGACTTCAATTTCTTT 60.255 37.037 19.32 5.07 42.15 2.52
2193 2294 6.202954 CGTAGGTGTGAAGACTTCAATTTCTT 59.797 38.462 19.32 9.05 42.15 2.52
2194 2295 5.696724 CGTAGGTGTGAAGACTTCAATTTCT 59.303 40.000 19.32 15.32 42.15 2.52
2195 2296 5.465724 ACGTAGGTGTGAAGACTTCAATTTC 59.534 40.000 19.32 7.90 42.15 2.17
2196 2297 5.365619 ACGTAGGTGTGAAGACTTCAATTT 58.634 37.500 19.32 8.37 42.15 1.82
2197 2298 4.957296 ACGTAGGTGTGAAGACTTCAATT 58.043 39.130 19.32 8.06 42.15 2.32
2198 2299 4.602340 ACGTAGGTGTGAAGACTTCAAT 57.398 40.909 19.32 8.69 42.15 2.57
2199 2300 4.338964 TGTACGTAGGTGTGAAGACTTCAA 59.661 41.667 19.32 7.58 42.15 2.69
2200 2301 3.884693 TGTACGTAGGTGTGAAGACTTCA 59.115 43.478 13.99 13.99 37.33 3.02
2201 2302 4.214971 TCTGTACGTAGGTGTGAAGACTTC 59.785 45.833 8.34 8.34 0.00 3.01
2202 2303 4.139786 TCTGTACGTAGGTGTGAAGACTT 58.860 43.478 0.00 0.00 0.00 3.01
2203 2304 3.748083 TCTGTACGTAGGTGTGAAGACT 58.252 45.455 0.00 0.00 0.00 3.24
2204 2305 4.494350 TTCTGTACGTAGGTGTGAAGAC 57.506 45.455 0.00 0.00 0.00 3.01
2205 2306 5.466819 CAATTCTGTACGTAGGTGTGAAGA 58.533 41.667 0.00 0.00 0.00 2.87
2206 2307 4.625742 CCAATTCTGTACGTAGGTGTGAAG 59.374 45.833 0.00 0.00 0.00 3.02
2207 2308 4.281435 TCCAATTCTGTACGTAGGTGTGAA 59.719 41.667 0.00 0.00 0.00 3.18
2208 2309 3.827876 TCCAATTCTGTACGTAGGTGTGA 59.172 43.478 0.00 0.00 0.00 3.58
2209 2310 4.082408 TCTCCAATTCTGTACGTAGGTGTG 60.082 45.833 0.00 0.00 0.00 3.82
2210 2311 4.084287 TCTCCAATTCTGTACGTAGGTGT 58.916 43.478 0.00 0.00 0.00 4.16
2211 2312 4.440250 CCTCTCCAATTCTGTACGTAGGTG 60.440 50.000 0.00 0.00 0.00 4.00
2212 2313 3.700038 CCTCTCCAATTCTGTACGTAGGT 59.300 47.826 0.00 0.00 0.00 3.08
2213 2314 3.952323 TCCTCTCCAATTCTGTACGTAGG 59.048 47.826 0.00 0.00 0.00 3.18
2214 2315 4.641094 AGTCCTCTCCAATTCTGTACGTAG 59.359 45.833 0.00 0.00 0.00 3.51
2215 2316 4.398358 CAGTCCTCTCCAATTCTGTACGTA 59.602 45.833 0.00 0.00 0.00 3.57
2216 2317 3.193691 CAGTCCTCTCCAATTCTGTACGT 59.806 47.826 0.00 0.00 0.00 3.57
2217 2318 3.429547 CCAGTCCTCTCCAATTCTGTACG 60.430 52.174 0.00 0.00 0.00 3.67
2218 2319 3.769844 TCCAGTCCTCTCCAATTCTGTAC 59.230 47.826 0.00 0.00 0.00 2.90
2219 2320 4.026744 CTCCAGTCCTCTCCAATTCTGTA 58.973 47.826 0.00 0.00 0.00 2.74
2220 2321 2.836981 CTCCAGTCCTCTCCAATTCTGT 59.163 50.000 0.00 0.00 0.00 3.41
2221 2322 2.419851 GCTCCAGTCCTCTCCAATTCTG 60.420 54.545 0.00 0.00 0.00 3.02
2222 2323 1.836802 GCTCCAGTCCTCTCCAATTCT 59.163 52.381 0.00 0.00 0.00 2.40
2223 2324 1.836802 AGCTCCAGTCCTCTCCAATTC 59.163 52.381 0.00 0.00 0.00 2.17
2224 2325 1.558756 CAGCTCCAGTCCTCTCCAATT 59.441 52.381 0.00 0.00 0.00 2.32
2225 2326 1.202330 CAGCTCCAGTCCTCTCCAAT 58.798 55.000 0.00 0.00 0.00 3.16
2226 2327 0.115152 TCAGCTCCAGTCCTCTCCAA 59.885 55.000 0.00 0.00 0.00 3.53
2227 2328 0.324183 CTCAGCTCCAGTCCTCTCCA 60.324 60.000 0.00 0.00 0.00 3.86
2228 2329 0.033601 TCTCAGCTCCAGTCCTCTCC 60.034 60.000 0.00 0.00 0.00 3.71
2229 2330 1.846007 TTCTCAGCTCCAGTCCTCTC 58.154 55.000 0.00 0.00 0.00 3.20
2230 2331 2.548464 ATTCTCAGCTCCAGTCCTCT 57.452 50.000 0.00 0.00 0.00 3.69
2231 2332 3.625649 AAATTCTCAGCTCCAGTCCTC 57.374 47.619 0.00 0.00 0.00 3.71
2232 2333 5.435291 CATAAAATTCTCAGCTCCAGTCCT 58.565 41.667 0.00 0.00 0.00 3.85
2233 2334 4.578105 CCATAAAATTCTCAGCTCCAGTCC 59.422 45.833 0.00 0.00 0.00 3.85
2234 2335 5.431765 TCCATAAAATTCTCAGCTCCAGTC 58.568 41.667 0.00 0.00 0.00 3.51
2235 2336 5.190528 TCTCCATAAAATTCTCAGCTCCAGT 59.809 40.000 0.00 0.00 0.00 4.00
2236 2337 5.678583 TCTCCATAAAATTCTCAGCTCCAG 58.321 41.667 0.00 0.00 0.00 3.86
2237 2338 5.190528 ACTCTCCATAAAATTCTCAGCTCCA 59.809 40.000 0.00 0.00 0.00 3.86
2238 2339 5.679601 ACTCTCCATAAAATTCTCAGCTCC 58.320 41.667 0.00 0.00 0.00 4.70
2239 2340 6.038050 CCAACTCTCCATAAAATTCTCAGCTC 59.962 42.308 0.00 0.00 0.00 4.09
2240 2341 5.884792 CCAACTCTCCATAAAATTCTCAGCT 59.115 40.000 0.00 0.00 0.00 4.24
2241 2342 5.882557 TCCAACTCTCCATAAAATTCTCAGC 59.117 40.000 0.00 0.00 0.00 4.26
2242 2343 7.279758 GTCTCCAACTCTCCATAAAATTCTCAG 59.720 40.741 0.00 0.00 0.00 3.35
2243 2344 7.106239 GTCTCCAACTCTCCATAAAATTCTCA 58.894 38.462 0.00 0.00 0.00 3.27
2244 2345 6.540551 GGTCTCCAACTCTCCATAAAATTCTC 59.459 42.308 0.00 0.00 0.00 2.87
2245 2346 6.216456 AGGTCTCCAACTCTCCATAAAATTCT 59.784 38.462 0.00 0.00 0.00 2.40
2246 2347 6.317391 CAGGTCTCCAACTCTCCATAAAATTC 59.683 42.308 0.00 0.00 0.00 2.17
2247 2348 6.183347 CAGGTCTCCAACTCTCCATAAAATT 58.817 40.000 0.00 0.00 0.00 1.82
2248 2349 5.749462 CAGGTCTCCAACTCTCCATAAAAT 58.251 41.667 0.00 0.00 0.00 1.82
2249 2350 4.565652 GCAGGTCTCCAACTCTCCATAAAA 60.566 45.833 0.00 0.00 0.00 1.52
2250 2351 3.055094 GCAGGTCTCCAACTCTCCATAAA 60.055 47.826 0.00 0.00 0.00 1.40
2251 2352 2.501723 GCAGGTCTCCAACTCTCCATAA 59.498 50.000 0.00 0.00 0.00 1.90
2252 2353 2.111384 GCAGGTCTCCAACTCTCCATA 58.889 52.381 0.00 0.00 0.00 2.74
2253 2354 0.908198 GCAGGTCTCCAACTCTCCAT 59.092 55.000 0.00 0.00 0.00 3.41
2254 2355 1.536073 CGCAGGTCTCCAACTCTCCA 61.536 60.000 0.00 0.00 0.00 3.86
2255 2356 1.216710 CGCAGGTCTCCAACTCTCC 59.783 63.158 0.00 0.00 0.00 3.71
2256 2357 1.446966 GCGCAGGTCTCCAACTCTC 60.447 63.158 0.30 0.00 0.00 3.20
2257 2358 2.659610 GCGCAGGTCTCCAACTCT 59.340 61.111 0.30 0.00 0.00 3.24
2258 2359 2.811317 CGCGCAGGTCTCCAACTC 60.811 66.667 8.75 0.00 0.00 3.01
2259 2360 4.379243 CCGCGCAGGTCTCCAACT 62.379 66.667 8.75 0.00 34.51 3.16
2283 2384 2.669569 TTGGAACAGGCGAGCAGC 60.670 61.111 0.00 0.00 42.39 5.25
2284 2385 2.037136 CCTTGGAACAGGCGAGCAG 61.037 63.158 0.00 0.00 42.39 4.24
2285 2386 2.032528 CCTTGGAACAGGCGAGCA 59.967 61.111 0.00 0.00 42.39 4.26
2286 2387 1.743252 CTCCTTGGAACAGGCGAGC 60.743 63.158 0.00 0.00 42.39 5.03
2287 2388 0.390472 GACTCCTTGGAACAGGCGAG 60.390 60.000 0.00 0.00 42.39 5.03
2288 2389 1.671742 GACTCCTTGGAACAGGCGA 59.328 57.895 0.00 0.00 42.39 5.54
2289 2390 1.738099 CGACTCCTTGGAACAGGCG 60.738 63.158 0.00 0.00 42.39 5.52
2290 2391 0.390472 CTCGACTCCTTGGAACAGGC 60.390 60.000 0.00 0.00 42.39 4.85
2291 2392 0.390472 GCTCGACTCCTTGGAACAGG 60.390 60.000 0.00 0.00 42.39 4.00
2292 2393 0.605589 AGCTCGACTCCTTGGAACAG 59.394 55.000 0.00 0.00 42.39 3.16
2293 2394 0.318441 CAGCTCGACTCCTTGGAACA 59.682 55.000 0.00 0.00 0.00 3.18
2294 2395 0.390472 CCAGCTCGACTCCTTGGAAC 60.390 60.000 0.00 0.00 0.00 3.62
2295 2396 1.975327 CCAGCTCGACTCCTTGGAA 59.025 57.895 0.00 0.00 0.00 3.53
2296 2397 2.650116 GCCAGCTCGACTCCTTGGA 61.650 63.158 0.00 0.00 0.00 3.53
2297 2398 2.125350 GCCAGCTCGACTCCTTGG 60.125 66.667 0.00 0.00 0.00 3.61
2298 2399 2.125350 GGCCAGCTCGACTCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
2299 2400 2.604686 TGGCCAGCTCGACTCCTT 60.605 61.111 0.00 0.00 0.00 3.36
2300 2401 3.073735 CTGGCCAGCTCGACTCCT 61.074 66.667 22.33 0.00 0.00 3.69
2310 2411 1.684983 CATAAATTCCCAGCTGGCCAG 59.315 52.381 29.34 29.34 0.00 4.85
2311 2412 1.287442 TCATAAATTCCCAGCTGGCCA 59.713 47.619 28.39 15.91 0.00 5.36
2312 2413 1.683385 GTCATAAATTCCCAGCTGGCC 59.317 52.381 28.39 0.00 0.00 5.36
2313 2414 1.334869 CGTCATAAATTCCCAGCTGGC 59.665 52.381 28.39 8.41 0.00 4.85
2314 2415 2.643551 ACGTCATAAATTCCCAGCTGG 58.356 47.619 26.87 26.87 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.