>input_sequence_83541
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------ATGG
CGTCGACGGCGAGGATAACGAGGGCCGCGCTGCTCGTCGCCGCCGTCGCGTTGATGCAGTGCTGCAACGCGGTCCTCGCG
GCGAGGTTGCTGGAAGGGGACGGCGTTGACGTGTGGCTGCGGCAGGGCGCCGGGTCGCTGATCATGCAGGCCCTGCCCAG
GGGCGGCTCGCCGCCGGGCGCAGGCAACTCGTGCTGGAACGATCCCAAACACCCCCCGTCGTCGGGGAGCTGCCACGGCT
AGCCGCCGT----CCGGCTGGCTGGCAATACACCTCGAACCTGGCTGTGGCTCGCCCGCCGTATAGCTCCTCCCGACGTT
GACAAGCTTGTTTAG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr4B_1_TraesCS4B01G279600
TTAGATATCATAAGCGTCGCAATACCTTCCATCAATGATGGTGTTCCGTGTCTCCAAGTCTGATCAGGGAGGCGCCGCGC
GAGTCGAATAGCTAGCTAGGAAACCGACCGGGGAGGTTTATTGATTACGTGACCGGAAACTCCGTCCGTCCATTTGTGCG
GAACACAGACT----TATGAAATGTGGAAATTTTGGTTGAAATTTGATTTGGGTTGGTT---AAACCAGAACTAGTATAG
GACTATATTCTTGCATTATGTGGTCACCCCGCTCCTCCGCTGCGCTGAGAGGCCCACAGGCAGTGTGTGGTGTACGTTGT
TCCCCTGGGTTTTTCTCCCGTGCTGATCTGAGTTTGGACATACCGACCACGTATCTGACGCTTTTTTTTTTGAGGGTATC
TGACGCTTTTGGGGCACAGGGGTGTGGGGCACAGGGGTGTGCGGTTTCTGGCCGGTTGGGGGCGATCAGCCTCCAAGTCG
CCACTTTCCCGGAAGCTGTTGTTGCTCCCAAGTTGATCGCTGCACCGGTGCAGCAGCAGCACTGATGCCTGAACACGACC
GGACTGAAACTCTC-------CCAAGATGCTACGGTCCTGGTCTGGTCGATCGACAGATCAAATTCTACGATGCTGCTCC
AGCATTTAATCTGTTCTTTTTTTCTTTTTTTTTTGCAGGCACATTTAATCTGTTCAGCAACTCAGAAAATTATTCGGGCC
GCCTTAAACGCGTACGTACGTATAGGACCCGGTAAAAAAGTCGAGTAGTA--------ACTACTACTACAACAGAGTATA
GAATAGACCCGGTCCGGTCCTTGGTTTTGACGGTTAACCATGCATGCATACCAGCATACGCACTGAACAAGCAGTATAAA
ACGGAGCCATGAGCTCGCCCCTCCCCCACCAAGCAGCCGAGTTCAAGTGCTCGTGTTTCTCCACCTGC--------TGTC
ACCCTACTCAACTGGCAAGCGGCAAGTT------GCCGATCATAACCCCGGCCCGATAGAAATCCGCCCAAGGAAAATGG
CGTCGACGGCGAGGATAACGAGGGCCGCGCTGCTCGTCGCCGCCGTCGCGTTGATGCAGTGCTGCAACGCGGTCCTCGCG
GCGAGGTTGCTGGAAGGGGACGGCGTTGACGTGTGGCTGCGGCAGGGCGCCGGGTCGCTGATCATGCAGGCCCTGCCCAG
GGGCGGCTCGCCGCCGGGCGCAGGCAACTCGTGCTGGAACGATCCCAAACACCCCCCGTCGTCGGGGAGCTGCCACGGCT
AGCCGCCGT----CCGGCTGGCTGGCAATACACCTCGAACCTGGCTGTGGCTCGCCCGCCGTATAGCTCCTCCCGACGTT
GACAAGCTTGTTTAGATTGATGTTCGTTCATTCGTTTGCTCCCG-TTCGTTTGTACAGTGACACCTCGCGTCTAAGAGCT
CTCATGCGAAAATCGGAGCCTTGGAAGCTGATT----------------------------GTAGTGAAT----AATAAA
CTTCAATACAACGTAGACGTAAGGTCTTGTAACCGAGCTGATTAGTCAATTAATTAACAGGTCAACCTGTGCAGAAAGAT
TTCCACGGCATGCGGAGGACTTT----GCTTCCAC-TTTGAGCTCGTTGATCGGGTCCATTTGTTGCACTTCGATAGGTC
AGCATTTGCCGAATGTTGTCCAAGGTCATCTCTTTGCCATCT----CGCCGTTGGTAACTGAATATCGGTAGTAAAA-GC
ATGATGTCTTAATTCCTCGGAC-AGCGTGAACAGTCTAGTT----TCAACCTGAACGACATGATCC-AACTTTTCCATTC
AACGTTTATGTTCTTTGTTTATTCAAA-AGATGTACGCAGTCAAGTTCTTTTGGCCCAAAATACC---ACCCTAC-----
-ACGTCTCAACCCACGTACGGACCGCATGCAAAGACCTGAAACCTTTTTATGTCTTGTTTCCTACTCCTTCGTACAAAAT
ATAAGGCGTTTTT-TAGGCTCCTTTATCCTACAAAAAAGGTCTTATATTTTGATACGGAGACAATAGTTTTTTTTGAAAA
AAAAAACGTTTATGCTAGCCACTTTATTAATGGCATTGGCACGAGCTATGTTGCACGGATACTTGGATACATATCGGATA
CGTGATACGGTGATACGCCCGATACGACAATTTTCTAAAAACTAGGATATAGGAATACGTTTGTATATACATATTAATTA
TTAAAGATATGAAAAAATAACGAGTTTTTGATAGGAAACGTACTGTGTTATTAAAGAAATTGAAGTCTTCACACCTACGT
ACAGAATTGGAGAGGACTGGAGCTGAGAATTTTATGGAGAGTTGGAGACCTGCGCGGGCTGCGGCTGCTCGCCTGTTCCA
AGGAGTCGAGCTGGCCAGCTGGGAATTTATGACGT
>chr4D_1
TTAGATATCATAAGCGCTGCAATGCCTTCCATCAATGATGGTGTTCCGTGTCTCCAAGTCCGATCAGGGAGGCGCCGCGC
GAGTCGAATAGCTAGCTAGGAAACCGACCGGGGAGGTTTATTGATTACCTTACCGGAAACCCTGTCCGTCCATTTGTGCG
GATCACAGACTTACTTATAAAATGTGGAAATTTTGGCCGAAATTTGACTTCCGGTTGGTTAAAAACCAGAACTAGTAT--
--CTATATTCTTGCATTATGTGGTCACCCTGCTCCTCCGCTGCGCTGAGAGGCCTGCAGGCAGTGTGTGGTGTACGTTGT
TTCCCTGGGTTTTTCTCCCGTGGTGATCTGAGTTTGGACAAGCC------------------------------------
--------------------------------------------------------------------------------
----------------------------------GATCGCTGCACCGGTGCAGCA-----------------ACAAGACC
GGGCTGAAACTGTCCATTTCTCCAAGATGCTGCGGTCCTGGTCTGGT-GACCGATAGATCAAATTCTACGATGCTGCGTG
CGTACGTA------------------------------------------------------------------------
----------CGTACGTACGTATAGGACCCGATAAAAAAGTCGAGTAGTACAAGCACCACCACCACCACTACAGACTATA
GAACGGACCCGGTCCGGTCCTCCGTTTTGACGGTTAACCATTGCATGCGTACGTACGCACCGAACAACAAGTACTATAAA
ACAGAACCACGAGCTTGCCTCTCTTGCACCAACTGGCCAGCAAGTTGAAGCGTTTGTCCGATCCGCTTCGGCCACTTGCT
AACTTTCTCAATCCGCAAGCCGCAAGTTGCTGTTGCCGATCATAACCCCGGCCCAGTAGAAATCAACCCAAGG-AAATGG
CGTCGGCGGAAAGGATAACGAGGGCCGCGCTGCTGGTCACCGCGGCCGTGTTGATGCAGTGCTGCAACGCGGCCCTCGCG
GCGAGGTTGCTCGAAGGGGACGGCGG------GTGGCTGCGGCGGGGCGCCGGGTCGCTGATCATGGAGGTCCTGCCCAG
GT-----------------GCAGGCAACTCGTGCTGGAACGATCCCAAACACCCCCCGTCGTCGGGGAGCTGCCACGGCT
AGCCGCC---------------------------TCGAACCTGGCTGTAGCG----------------------GACATT
GACATGCTTGTGTAGATTAATATTGGTTCATTCATTTGCTCCCG-TTCGTTTGTACA-----------------AGAGCT
TACACGCGAAAATCGGAGCCTTGGAAGCTAATTAACAGAGCTCA----------TGCTATAGCAGTGAACAATAAATAAA
CTTCAATAAAACGTAGACGTAAGATCTTGTAACCGAGCTGATTAGTTAATTGATTAACAGATCAACCTGTGCAGAAAGAT
TTCCACGGCATGCGGAGGACTTTAATTGCTTCCACTTTTGAGTTCGTTGATCAGGTCCATTTGTTGTTGCACTTC-GGTC
AGCACTTGCCGAATGTTGTTCAAGGTCATCTCTTTGACATAT----CGCCGTTGGTAACTGAATATCGGTAGTAAAAAGC
ATGGTGTCTGAATTCCTCAGGC-AGCGTGAACAGTCTAGTT----TCAACCTGAACGACATGATCGAAACTTTTCCATTC
AACGTTTATGTTCTTTGTTTATTCAAATATATGTACGCAGTCAAGTTCTTTTGGCCCCAAATACTAGGTACTATACTCTA
TACGTCTCAACCCACGTACGGACTGCATGCAGAGACCTGAAACCA--TTTTGTTTTGTTTCCTA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr4A_1198
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CTGGAACGATCCCAAACACCCGCCGTCGTCGGGGAGCTGCCACGGCT
AGCCGCCGGCCGCCCGGCCGGCTGGCAAGAGGCCTCGAACCTGGCTGTAGCG----------------------GACATT
GACATGCTTGTGTAGACTGATATTCGTTCATTCATTTGCTCCCGGTTCGTTTGTAC-----------------AAGAGCT
CCCATGCGAAAACCGGAGCCTTGGAAGCTAATAGCAGAGCTGATCACATTCTAGTGCTATCGTAGTGAAT----AATAAA
CTTCAATAAAACGTAGACGTGAGGTCTTGTAACCGAGCTGATTAGTTTATTAATTAACGGGTCAACCTGTGCAGAAAGAT
TTCCACGGCATGCCGAGGACTTT----GCTTCCAC-TTTGAGCTCGTTGTTCAGGTCCATTTGTTGCACTTCGATAGGCC
AGCATTTGCCGATC---GTTCAAGGTCATCTCTTTGACATCTCGCGCGCCGTTGGTAACTGAATATCGCTAGTAAAAAGC
ATGATGTCTGAATTCCTCGGACAAGCGTGAACAGTCTAGTTCAATTCAACCTGAACGACA--------------------
--------TGTTCTTTGTTTATTCAAA-ATATGTAGGCAGTCAAGTTCTTTTGGCCCAAAATACTAGTACTCTAC-----
-ACGTCTCAAACAACGTACGGACTGCATGCAGAGACCTGAGAACTTTTTTTGTCTTGTTTCCTACTCCGTGT---AAAAT
ATAAGACATTTTTGTAGGCTAGTTTATCCT--AAAAAAGGTCTTATATTTTGATATTGGGGCAGTATTTTTTTCTGAAAA
AAAAA-CGTTTATGCTAGCCACGTTATTCGTGGCATTGGCACGAG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>SNPs
----------------SS-----S------------------------------------S-------------------
------------------------------------------------S-S---------S-S-----------------
--S---------------S-----------------SS---------S--SS-S-S-S--------------------SS
SS---------------------------S------------------------SS------------------------
-S--------------------S-----------------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------SSSSSSSSSSSSSSSSS---S----
--S--------S-------------------S---------------S--S---S----------------------SSS
S-S-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------------S----------------------------S--S--S--S-----S----
---SS----------------SS------------------SSSSSSSSSS-SSSSSSSS-SSSS------S-S------
--S--S---S-----S---S---SSS------SSS---SSSSSSSS-SSSSSS-SS-S-SSSS-SSSS----------SS
-S-S-S-----SSS------S---------------------------------SS--------SS-------S------
-----S---SS-----------------------S---S----S-S--S-----------------------S-------
-----------S-------------SSSSSSS-----------S----------------------S---S---------
-SSSSSSSSSSSSSSSSSS-------------------------------------------------------------
--------S---------S---------S-SS----------------S--SSSSSSSSSSSSSSSSSSSSSSS---S--
----S------S---------S-----------S-----------------------SSSSSSSSSSSSSSSS-------
-S---------------------------S--------------------------------------------------
--------S-------------------------------------S---------------------------------
----------------------------------------------------S---------------------------
-------------------S----------------S-------------------------------------------
---------S-------------------------------------------------------S--------------
-----------------------------S----------------------------------S---------------
-----------------------S-------S-----------------S------------------S-SSSSS-----
-----S-S------------SS--------SS-----------------------SS-S-S--S--S------S------
-----S----------------S-----SS---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_572
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ACACGACC
GGACTGAAACTC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_2160
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
CGTGATACGGTGATACGCC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
