Multiple sequence alignment - TraesCS4B01G277700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G277700 chr4B 100.000 2446 0 0 1 2446 559289220 559286775 0.000000e+00 4518
1 TraesCS4B01G277700 chr4B 91.522 460 34 3 1 459 600915088 600914633 1.600000e-176 628
2 TraesCS4B01G277700 chr4B 90.948 464 37 2 1 463 115363609 115364068 9.610000e-174 619
3 TraesCS4B01G277700 chr4B 90.733 464 38 2 1 463 622438462 622438003 4.470000e-172 614
4 TraesCS4B01G277700 chr4D 92.237 1842 70 35 643 2444 446916881 446915073 0.000000e+00 2542
5 TraesCS4B01G277700 chr4A 88.562 1906 106 50 546 2395 20259472 20261321 0.000000e+00 2209
6 TraesCS4B01G277700 chr7B 91.957 460 32 2 1 459 577803003 577803458 7.370000e-180 640
7 TraesCS4B01G277700 chr7B 91.522 460 34 2 1 459 189490411 189489956 1.600000e-176 628
8 TraesCS4B01G277700 chr7B 91.087 460 36 2 1 459 362401928 362402383 3.460000e-173 617
9 TraesCS4B01G277700 chr7B 92.727 110 7 1 2019 2128 79312992 79312884 9.050000e-35 158
10 TraesCS4B01G277700 chr5B 91.522 460 34 2 1 459 233809460 233809005 1.600000e-176 628
11 TraesCS4B01G277700 chrUn 91.126 462 36 3 1 461 36480354 36479897 2.670000e-174 621
12 TraesCS4B01G277700 chrUn 90.733 464 38 2 1 463 60350655 60350196 4.470000e-172 614
13 TraesCS4B01G277700 chr2D 96.262 107 0 4 2023 2128 122055648 122055545 3.230000e-39 172
14 TraesCS4B01G277700 chr6D 95.413 109 2 3 2023 2129 34401778 34401671 1.160000e-38 171
15 TraesCS4B01G277700 chr6B 95.413 109 2 3 2023 2129 71153628 71153521 1.160000e-38 171
16 TraesCS4B01G277700 chr6A 96.154 104 4 0 2026 2129 38556630 38556527 1.160000e-38 171
17 TraesCS4B01G277700 chr2B 96.226 106 1 3 2023 2127 175075327 175075224 1.160000e-38 171
18 TraesCS4B01G277700 chr7A 91.667 120 7 3 2013 2130 26296215 26296097 1.950000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G277700 chr4B 559286775 559289220 2445 True 4518 4518 100.000 1 2446 1 chr4B.!!$R1 2445
1 TraesCS4B01G277700 chr4D 446915073 446916881 1808 True 2542 2542 92.237 643 2444 1 chr4D.!!$R1 1801
2 TraesCS4B01G277700 chr4A 20259472 20261321 1849 False 2209 2209 88.562 546 2395 1 chr4A.!!$F1 1849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 348 0.033504 CGAAATGGATCGACCCGGAT 59.966 55.0 0.73 0.0 45.48 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 1523 0.106569 CAGGGCATGAAGGGCATACA 60.107 55.0 0.0 0.0 34.82 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.811317 GCGGTCGCAGTTCCAGAG 60.811 66.667 10.67 0.00 41.49 3.35
22 23 2.125912 CGGTCGCAGTTCCAGAGG 60.126 66.667 0.00 0.00 0.00 3.69
23 24 2.435059 GGTCGCAGTTCCAGAGGC 60.435 66.667 0.00 0.00 0.00 4.70
24 25 2.435059 GTCGCAGTTCCAGAGGCC 60.435 66.667 0.00 0.00 0.00 5.19
25 26 3.706373 TCGCAGTTCCAGAGGCCC 61.706 66.667 0.00 0.00 0.00 5.80
26 27 4.020617 CGCAGTTCCAGAGGCCCA 62.021 66.667 0.00 0.00 0.00 5.36
27 28 2.679716 GCAGTTCCAGAGGCCCAT 59.320 61.111 0.00 0.00 0.00 4.00
28 29 1.751927 GCAGTTCCAGAGGCCCATG 60.752 63.158 0.00 0.00 0.00 3.66
29 30 1.077212 CAGTTCCAGAGGCCCATGG 60.077 63.158 16.27 16.27 37.97 3.66
62 63 3.788766 CGGCCGGCGAGTTTCTTG 61.789 66.667 22.54 0.00 0.00 3.02
63 64 3.431725 GGCCGGCGAGTTTCTTGG 61.432 66.667 22.54 0.00 0.00 3.61
64 65 4.103103 GCCGGCGAGTTTCTTGGC 62.103 66.667 12.58 0.00 37.12 4.52
65 66 2.358737 CCGGCGAGTTTCTTGGCT 60.359 61.111 9.30 0.00 38.16 4.75
66 67 1.079405 CCGGCGAGTTTCTTGGCTA 60.079 57.895 9.30 0.00 38.16 3.93
67 68 1.084370 CCGGCGAGTTTCTTGGCTAG 61.084 60.000 9.30 0.00 38.16 3.42
68 69 1.084370 CGGCGAGTTTCTTGGCTAGG 61.084 60.000 0.00 0.00 38.16 3.02
69 70 0.744771 GGCGAGTTTCTTGGCTAGGG 60.745 60.000 0.00 0.00 37.44 3.53
70 71 0.036294 GCGAGTTTCTTGGCTAGGGT 60.036 55.000 0.00 0.00 0.00 4.34
71 72 1.610886 GCGAGTTTCTTGGCTAGGGTT 60.611 52.381 0.00 0.00 0.00 4.11
72 73 2.779506 CGAGTTTCTTGGCTAGGGTTT 58.220 47.619 0.00 0.00 0.00 3.27
73 74 2.484264 CGAGTTTCTTGGCTAGGGTTTG 59.516 50.000 0.00 0.00 0.00 2.93
74 75 2.820197 GAGTTTCTTGGCTAGGGTTTGG 59.180 50.000 0.00 0.00 0.00 3.28
75 76 1.893137 GTTTCTTGGCTAGGGTTTGGG 59.107 52.381 0.00 0.00 0.00 4.12
76 77 1.451449 TTCTTGGCTAGGGTTTGGGA 58.549 50.000 0.00 0.00 0.00 4.37
77 78 0.991920 TCTTGGCTAGGGTTTGGGAG 59.008 55.000 0.00 0.00 0.00 4.30
78 79 0.681243 CTTGGCTAGGGTTTGGGAGC 60.681 60.000 0.00 0.00 0.00 4.70
79 80 1.431195 TTGGCTAGGGTTTGGGAGCA 61.431 55.000 0.00 0.00 36.63 4.26
80 81 1.077429 GGCTAGGGTTTGGGAGCAG 60.077 63.158 0.00 0.00 36.63 4.24
81 82 1.077429 GCTAGGGTTTGGGAGCAGG 60.077 63.158 0.00 0.00 34.96 4.85
82 83 1.077429 CTAGGGTTTGGGAGCAGGC 60.077 63.158 0.00 0.00 0.00 4.85
83 84 2.876368 CTAGGGTTTGGGAGCAGGCG 62.876 65.000 0.00 0.00 0.00 5.52
100 101 4.388499 GCTGCCGGGTTTCGAGGA 62.388 66.667 2.18 0.00 42.43 3.71
101 102 2.125512 CTGCCGGGTTTCGAGGAG 60.126 66.667 2.18 0.00 42.43 3.69
102 103 3.665675 CTGCCGGGTTTCGAGGAGG 62.666 68.421 2.18 0.00 42.43 4.30
104 105 4.468689 CCGGGTTTCGAGGAGGCC 62.469 72.222 0.00 0.00 42.43 5.19
105 106 4.814294 CGGGTTTCGAGGAGGCCG 62.814 72.222 0.00 0.00 42.43 6.13
126 127 4.250305 GGTGGCGTGGGACAGTGT 62.250 66.667 0.00 0.00 41.80 3.55
127 128 2.972505 GTGGCGTGGGACAGTGTG 60.973 66.667 0.00 0.00 41.80 3.82
128 129 4.248842 TGGCGTGGGACAGTGTGG 62.249 66.667 0.00 0.00 41.80 4.17
129 130 3.936203 GGCGTGGGACAGTGTGGA 61.936 66.667 0.00 0.00 41.80 4.02
130 131 2.665185 GCGTGGGACAGTGTGGAC 60.665 66.667 0.00 0.00 41.80 4.02
131 132 2.355837 CGTGGGACAGTGTGGACG 60.356 66.667 0.00 1.96 41.80 4.79
132 133 2.852180 CGTGGGACAGTGTGGACGA 61.852 63.158 0.00 0.00 41.80 4.20
133 134 1.300697 GTGGGACAGTGTGGACGAC 60.301 63.158 0.00 0.00 41.80 4.34
134 135 2.049433 GGGACAGTGTGGACGACG 60.049 66.667 0.00 0.00 0.00 5.12
135 136 2.558286 GGGACAGTGTGGACGACGA 61.558 63.158 0.00 0.00 0.00 4.20
136 137 1.371389 GGACAGTGTGGACGACGAC 60.371 63.158 0.00 0.00 0.00 4.34
137 138 1.371389 GACAGTGTGGACGACGACC 60.371 63.158 9.52 9.52 0.00 4.79
138 139 2.049433 CAGTGTGGACGACGACCC 60.049 66.667 13.72 8.76 0.00 4.46
139 140 3.667282 AGTGTGGACGACGACCCG 61.667 66.667 13.72 0.00 0.00 5.28
140 141 3.969802 GTGTGGACGACGACCCGT 61.970 66.667 13.72 0.00 46.43 5.28
149 150 4.353437 ACGACCCGTCCACGCTTC 62.353 66.667 0.00 0.00 33.69 3.86
151 152 4.754667 GACCCGTCCACGCTTCCC 62.755 72.222 0.00 0.00 38.18 3.97
154 155 4.003788 CCGTCCACGCTTCCCACT 62.004 66.667 0.00 0.00 38.18 4.00
155 156 2.030562 CGTCCACGCTTCCCACTT 59.969 61.111 0.00 0.00 0.00 3.16
156 157 1.290955 CGTCCACGCTTCCCACTTA 59.709 57.895 0.00 0.00 0.00 2.24
157 158 0.320073 CGTCCACGCTTCCCACTTAA 60.320 55.000 0.00 0.00 0.00 1.85
158 159 1.874739 CGTCCACGCTTCCCACTTAAA 60.875 52.381 0.00 0.00 0.00 1.52
159 160 2.223745 GTCCACGCTTCCCACTTAAAA 58.776 47.619 0.00 0.00 0.00 1.52
160 161 2.619646 GTCCACGCTTCCCACTTAAAAA 59.380 45.455 0.00 0.00 0.00 1.94
189 190 2.503158 CGTTCGACGTGCGGATGA 60.503 61.111 2.03 0.00 36.59 2.92
190 191 2.774951 CGTTCGACGTGCGGATGAC 61.775 63.158 2.03 0.00 36.59 3.06
191 192 1.731613 GTTCGACGTGCGGATGACA 60.732 57.895 2.03 0.00 41.33 3.58
192 193 1.443702 TTCGACGTGCGGATGACAG 60.444 57.895 2.03 0.00 41.33 3.51
193 194 1.858372 TTCGACGTGCGGATGACAGA 61.858 55.000 2.03 0.00 41.33 3.41
194 195 1.869574 CGACGTGCGGATGACAGAG 60.870 63.158 2.03 0.00 36.03 3.35
195 196 1.517257 GACGTGCGGATGACAGAGG 60.517 63.158 2.03 0.00 0.00 3.69
196 197 2.202797 CGTGCGGATGACAGAGGG 60.203 66.667 0.00 0.00 0.00 4.30
197 198 2.187946 GTGCGGATGACAGAGGGG 59.812 66.667 0.00 0.00 0.00 4.79
198 199 3.083349 TGCGGATGACAGAGGGGG 61.083 66.667 0.00 0.00 0.00 5.40
199 200 4.554036 GCGGATGACAGAGGGGGC 62.554 72.222 0.00 0.00 0.00 5.80
200 201 3.866582 CGGATGACAGAGGGGGCC 61.867 72.222 0.00 0.00 0.00 5.80
201 202 3.866582 GGATGACAGAGGGGGCCG 61.867 72.222 0.00 0.00 0.00 6.13
202 203 4.554036 GATGACAGAGGGGGCCGC 62.554 72.222 13.58 13.58 0.00 6.53
222 223 2.787249 GCTCGTGCGCATTGATGT 59.213 55.556 15.91 0.00 0.00 3.06
223 224 1.135315 GCTCGTGCGCATTGATGTT 59.865 52.632 15.91 0.00 0.00 2.71
224 225 1.129879 GCTCGTGCGCATTGATGTTG 61.130 55.000 15.91 4.33 0.00 3.33
225 226 0.521867 CTCGTGCGCATTGATGTTGG 60.522 55.000 15.91 0.00 0.00 3.77
226 227 2.153945 CGTGCGCATTGATGTTGGC 61.154 57.895 15.91 0.00 0.00 4.52
227 228 1.806758 GTGCGCATTGATGTTGGCC 60.807 57.895 15.91 0.00 0.00 5.36
228 229 2.580326 GCGCATTGATGTTGGCCG 60.580 61.111 0.30 0.00 0.00 6.13
229 230 2.102749 CGCATTGATGTTGGCCGG 59.897 61.111 0.00 0.00 0.00 6.13
230 231 2.699768 CGCATTGATGTTGGCCGGT 61.700 57.895 1.90 0.00 0.00 5.28
231 232 1.153784 GCATTGATGTTGGCCGGTG 60.154 57.895 1.90 0.00 0.00 4.94
232 233 1.512230 CATTGATGTTGGCCGGTGG 59.488 57.895 1.90 0.00 0.00 4.61
233 234 1.682005 ATTGATGTTGGCCGGTGGG 60.682 57.895 1.90 0.00 0.00 4.61
234 235 2.148723 ATTGATGTTGGCCGGTGGGA 62.149 55.000 1.90 0.00 34.06 4.37
235 236 2.438434 GATGTTGGCCGGTGGGAG 60.438 66.667 1.90 0.00 34.06 4.30
236 237 3.995506 GATGTTGGCCGGTGGGAGG 62.996 68.421 1.90 0.00 34.06 4.30
238 239 3.324108 GTTGGCCGGTGGGAGGTA 61.324 66.667 1.90 0.00 34.06 3.08
239 240 3.006728 TTGGCCGGTGGGAGGTAG 61.007 66.667 1.90 0.00 34.06 3.18
242 243 3.782443 GCCGGTGGGAGGTAGGTG 61.782 72.222 1.90 0.00 34.06 4.00
243 244 3.081409 CCGGTGGGAGGTAGGTGG 61.081 72.222 0.00 0.00 34.06 4.61
244 245 3.782443 CGGTGGGAGGTAGGTGGC 61.782 72.222 0.00 0.00 0.00 5.01
245 246 3.408853 GGTGGGAGGTAGGTGGCC 61.409 72.222 0.00 0.00 0.00 5.36
246 247 3.782443 GTGGGAGGTAGGTGGCCG 61.782 72.222 0.00 0.00 0.00 6.13
250 251 4.162690 GAGGTAGGTGGCCGCCTG 62.163 72.222 42.20 0.00 39.60 4.85
294 295 4.364409 GCGCGTCCGTTTGGTGTC 62.364 66.667 8.43 0.00 36.67 3.67
295 296 3.708734 CGCGTCCGTTTGGTGTCC 61.709 66.667 0.00 0.00 36.30 4.02
296 297 3.708734 GCGTCCGTTTGGTGTCCG 61.709 66.667 0.00 0.00 36.30 4.79
297 298 2.279650 CGTCCGTTTGGTGTCCGT 60.280 61.111 0.00 0.00 36.30 4.69
298 299 2.305127 CGTCCGTTTGGTGTCCGTC 61.305 63.158 0.00 0.00 36.30 4.79
299 300 2.027897 TCCGTTTGGTGTCCGTCG 59.972 61.111 0.00 0.00 36.30 5.12
300 301 3.708734 CCGTTTGGTGTCCGTCGC 61.709 66.667 0.00 0.00 0.00 5.19
301 302 4.054455 CGTTTGGTGTCCGTCGCG 62.054 66.667 0.00 0.00 0.00 5.87
302 303 2.659244 GTTTGGTGTCCGTCGCGA 60.659 61.111 3.71 3.71 0.00 5.87
303 304 2.659244 TTTGGTGTCCGTCGCGAC 60.659 61.111 28.96 28.96 0.00 5.19
304 305 4.651008 TTGGTGTCCGTCGCGACC 62.651 66.667 31.84 18.82 31.35 4.79
307 308 4.651008 GTGTCCGTCGCGACCCAA 62.651 66.667 31.84 15.56 31.35 4.12
308 309 3.914117 TGTCCGTCGCGACCCAAA 61.914 61.111 31.84 12.15 31.35 3.28
309 310 3.408851 GTCCGTCGCGACCCAAAC 61.409 66.667 31.84 20.10 0.00 2.93
310 311 4.668118 TCCGTCGCGACCCAAACC 62.668 66.667 31.84 7.13 0.00 3.27
321 322 3.601685 CCAAACCCGGCGCAAGTT 61.602 61.111 10.83 6.41 41.68 2.66
322 323 2.415426 CAAACCCGGCGCAAGTTT 59.585 55.556 10.83 12.71 41.68 2.66
323 324 1.948635 CAAACCCGGCGCAAGTTTG 60.949 57.895 24.85 24.85 42.93 2.93
332 333 4.607024 GCAAGTTTGCGCTCGAAA 57.393 50.000 9.73 0.00 45.11 3.46
333 334 3.092081 GCAAGTTTGCGCTCGAAAT 57.908 47.368 9.73 0.00 45.11 2.17
334 335 0.704551 GCAAGTTTGCGCTCGAAATG 59.295 50.000 9.73 1.98 45.11 2.32
335 336 1.330306 CAAGTTTGCGCTCGAAATGG 58.670 50.000 9.73 0.00 0.00 3.16
336 337 1.069296 CAAGTTTGCGCTCGAAATGGA 60.069 47.619 9.73 0.00 0.00 3.41
337 338 1.453155 AGTTTGCGCTCGAAATGGAT 58.547 45.000 9.73 0.00 0.00 3.41
338 339 1.398390 AGTTTGCGCTCGAAATGGATC 59.602 47.619 9.73 0.00 0.00 3.36
339 340 0.373370 TTTGCGCTCGAAATGGATCG 59.627 50.000 9.73 0.00 44.04 3.69
341 342 1.145759 TGCGCTCGAAATGGATCGAC 61.146 55.000 9.73 0.00 46.12 4.20
342 343 1.822250 GCGCTCGAAATGGATCGACC 61.822 60.000 0.00 0.00 46.12 4.79
343 344 1.215655 CGCTCGAAATGGATCGACCC 61.216 60.000 0.00 0.00 46.12 4.46
344 345 1.215655 GCTCGAAATGGATCGACCCG 61.216 60.000 0.00 0.00 46.12 5.28
345 346 0.597637 CTCGAAATGGATCGACCCGG 60.598 60.000 0.00 0.00 46.12 5.73
346 347 1.038681 TCGAAATGGATCGACCCGGA 61.039 55.000 0.73 0.00 46.12 5.14
347 348 0.033504 CGAAATGGATCGACCCGGAT 59.966 55.000 0.73 0.00 45.48 4.18
348 349 1.271379 CGAAATGGATCGACCCGGATA 59.729 52.381 0.73 0.00 45.48 2.59
349 350 2.685100 GAAATGGATCGACCCGGATAC 58.315 52.381 0.73 0.00 38.00 2.24
350 351 1.712056 AATGGATCGACCCGGATACA 58.288 50.000 0.73 0.00 41.35 2.29
351 352 1.712056 ATGGATCGACCCGGATACAA 58.288 50.000 0.73 0.00 40.52 2.41
352 353 1.487300 TGGATCGACCCGGATACAAA 58.513 50.000 0.73 0.00 34.34 2.83
353 354 1.832366 TGGATCGACCCGGATACAAAA 59.168 47.619 0.73 0.00 34.34 2.44
354 355 2.207590 GGATCGACCCGGATACAAAAC 58.792 52.381 0.73 0.00 0.00 2.43
355 356 1.856597 GATCGACCCGGATACAAAACG 59.143 52.381 0.73 0.00 0.00 3.60
356 357 0.108709 TCGACCCGGATACAAAACGG 60.109 55.000 0.73 0.00 46.79 4.44
364 365 4.258935 CGGATACAAAACGGACAGAATG 57.741 45.455 0.00 0.00 46.00 2.67
365 366 3.063452 CGGATACAAAACGGACAGAATGG 59.937 47.826 0.00 0.00 43.62 3.16
366 367 3.377172 GGATACAAAACGGACAGAATGGG 59.623 47.826 0.00 0.00 43.62 4.00
367 368 2.358322 ACAAAACGGACAGAATGGGT 57.642 45.000 0.00 0.00 43.62 4.51
368 369 2.227194 ACAAAACGGACAGAATGGGTC 58.773 47.619 0.00 0.00 43.62 4.46
373 374 4.645809 GACAGAATGGGTCCAGGC 57.354 61.111 0.00 0.00 43.62 4.85
374 375 1.077429 GACAGAATGGGTCCAGGCC 60.077 63.158 0.00 0.00 43.62 5.19
375 376 2.124570 CAGAATGGGTCCAGGCCG 60.125 66.667 0.00 0.00 0.00 6.13
376 377 2.610859 AGAATGGGTCCAGGCCGT 60.611 61.111 0.00 0.00 0.00 5.68
377 378 2.124695 GAATGGGTCCAGGCCGTC 60.125 66.667 0.00 0.00 0.00 4.79
378 379 4.096003 AATGGGTCCAGGCCGTCG 62.096 66.667 0.00 0.00 0.00 5.12
398 399 2.354539 CGTTGGCCGCCTTGTTTG 60.355 61.111 11.61 0.00 0.00 2.93
399 400 2.811799 GTTGGCCGCCTTGTTTGT 59.188 55.556 11.61 0.00 0.00 2.83
400 401 1.142965 GTTGGCCGCCTTGTTTGTT 59.857 52.632 11.61 0.00 0.00 2.83
401 402 0.874175 GTTGGCCGCCTTGTTTGTTC 60.874 55.000 11.61 0.00 0.00 3.18
402 403 2.022240 TTGGCCGCCTTGTTTGTTCC 62.022 55.000 11.61 0.00 0.00 3.62
403 404 2.200337 GGCCGCCTTGTTTGTTCCT 61.200 57.895 0.71 0.00 0.00 3.36
404 405 1.739667 GCCGCCTTGTTTGTTCCTT 59.260 52.632 0.00 0.00 0.00 3.36
405 406 0.104120 GCCGCCTTGTTTGTTCCTTT 59.896 50.000 0.00 0.00 0.00 3.11
406 407 1.472552 GCCGCCTTGTTTGTTCCTTTT 60.473 47.619 0.00 0.00 0.00 2.27
407 408 2.200899 CCGCCTTGTTTGTTCCTTTTG 58.799 47.619 0.00 0.00 0.00 2.44
408 409 1.592543 CGCCTTGTTTGTTCCTTTTGC 59.407 47.619 0.00 0.00 0.00 3.68
409 410 1.939934 GCCTTGTTTGTTCCTTTTGCC 59.060 47.619 0.00 0.00 0.00 4.52
410 411 2.419990 GCCTTGTTTGTTCCTTTTGCCT 60.420 45.455 0.00 0.00 0.00 4.75
411 412 3.457234 CCTTGTTTGTTCCTTTTGCCTC 58.543 45.455 0.00 0.00 0.00 4.70
412 413 3.118811 CCTTGTTTGTTCCTTTTGCCTCA 60.119 43.478 0.00 0.00 0.00 3.86
413 414 4.502962 CTTGTTTGTTCCTTTTGCCTCAA 58.497 39.130 0.00 0.00 0.00 3.02
414 415 4.543590 TGTTTGTTCCTTTTGCCTCAAA 57.456 36.364 0.00 0.00 0.00 2.69
415 416 4.249661 TGTTTGTTCCTTTTGCCTCAAAC 58.750 39.130 10.35 10.35 42.38 2.93
416 417 2.861462 TGTTCCTTTTGCCTCAAACG 57.139 45.000 0.00 0.00 32.79 3.60
417 418 1.407258 TGTTCCTTTTGCCTCAAACGG 59.593 47.619 8.09 8.09 41.94 4.44
418 419 1.679153 GTTCCTTTTGCCTCAAACGGA 59.321 47.619 11.83 11.83 45.56 4.69
419 420 2.286365 TCCTTTTGCCTCAAACGGAT 57.714 45.000 11.83 0.00 43.52 4.18
420 421 3.426787 TCCTTTTGCCTCAAACGGATA 57.573 42.857 11.83 0.00 43.52 2.59
421 422 3.343617 TCCTTTTGCCTCAAACGGATAG 58.656 45.455 11.83 0.00 43.52 2.08
422 423 2.423538 CCTTTTGCCTCAAACGGATAGG 59.576 50.000 8.58 1.90 42.80 2.57
423 424 2.122783 TTTGCCTCAAACGGATAGGG 57.877 50.000 0.00 0.00 0.00 3.53
424 425 0.393808 TTGCCTCAAACGGATAGGGC 60.394 55.000 0.00 0.00 39.93 5.19
425 426 1.526225 GCCTCAAACGGATAGGGCC 60.526 63.158 0.00 0.00 34.19 5.80
433 434 2.122989 GGATAGGGCCGGACAGGA 60.123 66.667 11.00 0.00 45.00 3.86
434 435 1.536662 GGATAGGGCCGGACAGGAT 60.537 63.158 11.00 0.00 45.00 3.24
435 436 0.252103 GGATAGGGCCGGACAGGATA 60.252 60.000 11.00 0.00 45.00 2.59
436 437 1.640917 GATAGGGCCGGACAGGATAA 58.359 55.000 11.00 0.00 45.00 1.75
437 438 1.550976 GATAGGGCCGGACAGGATAAG 59.449 57.143 11.00 0.00 45.00 1.73
438 439 0.471211 TAGGGCCGGACAGGATAAGG 60.471 60.000 11.00 0.00 45.00 2.69
439 440 2.070650 GGGCCGGACAGGATAAGGT 61.071 63.158 11.00 0.00 45.00 3.50
440 441 1.146263 GGCCGGACAGGATAAGGTG 59.854 63.158 5.05 0.00 45.00 4.00
441 442 1.146263 GCCGGACAGGATAAGGTGG 59.854 63.158 5.05 0.00 45.00 4.61
442 443 1.623542 GCCGGACAGGATAAGGTGGT 61.624 60.000 5.05 0.00 45.00 4.16
443 444 0.178068 CCGGACAGGATAAGGTGGTG 59.822 60.000 0.00 0.00 45.00 4.17
444 445 0.462047 CGGACAGGATAAGGTGGTGC 60.462 60.000 0.00 0.00 0.00 5.01
445 446 0.462047 GGACAGGATAAGGTGGTGCG 60.462 60.000 0.00 0.00 0.00 5.34
446 447 0.462047 GACAGGATAAGGTGGTGCGG 60.462 60.000 0.00 0.00 0.00 5.69
447 448 1.198759 ACAGGATAAGGTGGTGCGGT 61.199 55.000 0.00 0.00 0.00 5.68
448 449 0.744414 CAGGATAAGGTGGTGCGGTG 60.744 60.000 0.00 0.00 0.00 4.94
449 450 1.451387 GGATAAGGTGGTGCGGTGG 60.451 63.158 0.00 0.00 0.00 4.61
450 451 1.600107 GATAAGGTGGTGCGGTGGA 59.400 57.895 0.00 0.00 0.00 4.02
451 452 0.462047 GATAAGGTGGTGCGGTGGAG 60.462 60.000 0.00 0.00 0.00 3.86
452 453 1.198759 ATAAGGTGGTGCGGTGGAGT 61.199 55.000 0.00 0.00 0.00 3.85
453 454 1.412453 TAAGGTGGTGCGGTGGAGTT 61.412 55.000 0.00 0.00 0.00 3.01
454 455 2.958578 AAGGTGGTGCGGTGGAGTTG 62.959 60.000 0.00 0.00 0.00 3.16
455 456 2.978010 GTGGTGCGGTGGAGTTGG 60.978 66.667 0.00 0.00 0.00 3.77
456 457 4.947147 TGGTGCGGTGGAGTTGGC 62.947 66.667 0.00 0.00 0.00 4.52
458 459 4.643387 GTGCGGTGGAGTTGGCCT 62.643 66.667 3.32 0.00 0.00 5.19
459 460 3.884774 TGCGGTGGAGTTGGCCTT 61.885 61.111 3.32 0.00 0.00 4.35
460 461 2.349755 GCGGTGGAGTTGGCCTTA 59.650 61.111 3.32 0.00 0.00 2.69
461 462 1.745489 GCGGTGGAGTTGGCCTTAG 60.745 63.158 3.32 0.00 0.00 2.18
462 463 1.980052 CGGTGGAGTTGGCCTTAGA 59.020 57.895 3.32 0.00 0.00 2.10
463 464 0.391263 CGGTGGAGTTGGCCTTAGAC 60.391 60.000 3.32 0.00 0.00 2.59
464 465 0.035343 GGTGGAGTTGGCCTTAGACC 60.035 60.000 3.32 1.79 0.00 3.85
465 466 0.035343 GTGGAGTTGGCCTTAGACCC 60.035 60.000 3.32 0.00 0.00 4.46
466 467 1.221021 GGAGTTGGCCTTAGACCCG 59.779 63.158 3.32 0.00 0.00 5.28
467 468 1.262640 GGAGTTGGCCTTAGACCCGA 61.263 60.000 3.32 0.00 0.00 5.14
468 469 0.831307 GAGTTGGCCTTAGACCCGAT 59.169 55.000 3.32 0.00 0.00 4.18
469 470 0.541863 AGTTGGCCTTAGACCCGATG 59.458 55.000 3.32 0.00 0.00 3.84
470 471 0.463833 GTTGGCCTTAGACCCGATGG 60.464 60.000 3.32 0.00 37.80 3.51
481 482 4.457496 CCGATGGGCGCACAGACT 62.457 66.667 21.09 0.00 39.11 3.24
482 483 3.190849 CGATGGGCGCACAGACTG 61.191 66.667 21.09 3.31 0.00 3.51
483 484 3.503363 GATGGGCGCACAGACTGC 61.503 66.667 21.09 0.46 43.21 4.40
491 492 4.056125 CACAGACTGCGAGCCGGA 62.056 66.667 5.05 0.00 0.00 5.14
492 493 3.071206 ACAGACTGCGAGCCGGAT 61.071 61.111 5.05 0.00 0.00 4.18
493 494 2.185350 CAGACTGCGAGCCGGATT 59.815 61.111 5.05 0.00 0.00 3.01
494 495 2.169789 CAGACTGCGAGCCGGATTG 61.170 63.158 5.05 3.02 0.00 2.67
495 496 3.567797 GACTGCGAGCCGGATTGC 61.568 66.667 25.31 25.31 0.00 3.56
496 497 4.087892 ACTGCGAGCCGGATTGCT 62.088 61.111 30.84 10.80 46.37 3.91
497 498 3.570638 CTGCGAGCCGGATTGCTG 61.571 66.667 30.84 26.49 42.95 4.41
500 501 3.570638 CGAGCCGGATTGCTGCTG 61.571 66.667 5.05 0.00 42.95 4.41
501 502 3.885521 GAGCCGGATTGCTGCTGC 61.886 66.667 5.05 8.89 42.95 5.25
540 541 4.803426 GTGACCCGAGCGAGCCAG 62.803 72.222 0.00 0.00 0.00 4.85
574 578 4.690719 CCGGCGCTACACCCACAA 62.691 66.667 7.64 0.00 0.00 3.33
582 586 0.816018 CTACACCCACAAACACGGCA 60.816 55.000 0.00 0.00 0.00 5.69
584 588 1.251527 ACACCCACAAACACGGCAAA 61.252 50.000 0.00 0.00 0.00 3.68
591 595 0.995728 CAAACACGGCAAAACCACAC 59.004 50.000 0.00 0.00 39.03 3.82
592 596 0.456995 AAACACGGCAAAACCACACG 60.457 50.000 0.00 0.00 39.03 4.49
593 597 2.025441 CACGGCAAAACCACACGG 59.975 61.111 0.00 0.00 39.03 4.94
594 598 3.894947 ACGGCAAAACCACACGGC 61.895 61.111 0.00 0.00 39.03 5.68
595 599 4.639171 CGGCAAAACCACACGGCC 62.639 66.667 0.00 0.00 39.03 6.13
596 600 4.293648 GGCAAAACCACACGGCCC 62.294 66.667 0.00 0.00 38.70 5.80
597 601 4.293648 GCAAAACCACACGGCCCC 62.294 66.667 0.00 0.00 34.57 5.80
598 602 2.835431 CAAAACCACACGGCCCCA 60.835 61.111 0.00 0.00 34.57 4.96
599 603 2.520741 AAAACCACACGGCCCCAG 60.521 61.111 0.00 0.00 34.57 4.45
642 649 6.187727 TCTCTCTCTTTATCTCTCCTCTCC 57.812 45.833 0.00 0.00 0.00 3.71
646 653 4.105697 TCTCTTTATCTCTCCTCTCCCTCC 59.894 50.000 0.00 0.00 0.00 4.30
824 845 4.740822 GGCAATCACCGCCCACCT 62.741 66.667 0.00 0.00 44.22 4.00
825 846 2.270850 GCAATCACCGCCCACCTA 59.729 61.111 0.00 0.00 0.00 3.08
848 869 1.437625 GCTCTCGCTCTGCTTTTCTT 58.562 50.000 0.00 0.00 0.00 2.52
979 1009 2.383855 GAGATCTGGTGACCTAGCTGT 58.616 52.381 0.00 0.00 0.00 4.40
986 1016 2.351244 TGACCTAGCTGTGCGGAGG 61.351 63.158 0.00 10.54 40.64 4.30
1451 1494 0.612744 TCTTCATGCCATGACCGTCA 59.387 50.000 6.94 3.10 39.39 4.35
1475 1518 0.108615 ACAGCTCCGTCTGCACATAC 60.109 55.000 0.00 0.00 37.59 2.39
1476 1519 0.174389 CAGCTCCGTCTGCACATACT 59.826 55.000 0.00 0.00 0.00 2.12
1477 1520 1.405463 CAGCTCCGTCTGCACATACTA 59.595 52.381 0.00 0.00 0.00 1.82
1478 1521 2.035193 CAGCTCCGTCTGCACATACTAT 59.965 50.000 0.00 0.00 0.00 2.12
1479 1522 3.253432 CAGCTCCGTCTGCACATACTATA 59.747 47.826 0.00 0.00 0.00 1.31
1480 1523 4.082517 CAGCTCCGTCTGCACATACTATAT 60.083 45.833 0.00 0.00 0.00 0.86
1481 1524 4.082517 AGCTCCGTCTGCACATACTATATG 60.083 45.833 0.00 0.00 0.00 1.78
1482 1525 4.321304 GCTCCGTCTGCACATACTATATGT 60.321 45.833 0.00 0.00 0.00 2.29
1483 1526 5.106277 GCTCCGTCTGCACATACTATATGTA 60.106 44.000 1.27 0.00 35.37 2.29
1484 1527 6.404844 GCTCCGTCTGCACATACTATATGTAT 60.405 42.308 1.27 0.00 42.18 2.29
1511 1555 4.119363 GCCCTGATGCTGCTCCCA 62.119 66.667 0.00 0.00 0.00 4.37
1595 1643 4.704833 GCGCACAAGGCCAGGAGA 62.705 66.667 5.01 0.00 40.31 3.71
1605 1653 1.445095 GCCAGGAGATCGAGCACAT 59.555 57.895 2.38 0.00 0.00 3.21
1697 1757 2.558359 GACAGAAACCAAACATGGAGGG 59.442 50.000 1.10 0.00 0.00 4.30
1802 1865 2.058595 CGGGTCCGAAGAGGTGGAT 61.059 63.158 2.83 0.00 42.83 3.41
1817 1880 5.192722 AGAGGTGGATAGATGGATCGAGATA 59.807 44.000 0.00 0.00 0.00 1.98
1842 1907 1.400494 GTTCACGCTCTCTCTCTCTCC 59.600 57.143 0.00 0.00 0.00 3.71
1930 2001 3.897325 TCGTCAATCTATGCCGTGATAC 58.103 45.455 0.00 0.00 0.00 2.24
1942 2013 2.103263 GCCGTGATACTTTCTCCTGGAT 59.897 50.000 0.00 0.00 0.00 3.41
1943 2014 3.321111 GCCGTGATACTTTCTCCTGGATA 59.679 47.826 0.00 0.00 0.00 2.59
1948 2019 6.255887 CGTGATACTTTCTCCTGGATAAACAC 59.744 42.308 12.27 12.27 0.00 3.32
1956 2027 2.500098 TCCTGGATAAACACCTTCCTCG 59.500 50.000 0.00 0.00 0.00 4.63
1957 2028 2.280628 CTGGATAAACACCTTCCTCGC 58.719 52.381 0.00 0.00 0.00 5.03
1968 2039 1.167851 CTTCCTCGCCATTTTGCTCA 58.832 50.000 0.00 0.00 0.00 4.26
1969 2040 1.541147 CTTCCTCGCCATTTTGCTCAA 59.459 47.619 0.00 0.00 0.00 3.02
1988 2060 4.665212 TCAATTCGAGCATGCTTCATTTC 58.335 39.130 23.61 7.00 0.00 2.17
1993 2065 2.351418 CGAGCATGCTTCATTTCCGTAA 59.649 45.455 23.61 0.00 0.00 3.18
2022 2094 5.554822 TTCAATATGCGAAACTAACCACC 57.445 39.130 0.00 0.00 0.00 4.61
2025 2097 4.957759 ATATGCGAAACTAACCACCAAC 57.042 40.909 0.00 0.00 0.00 3.77
2112 2184 1.686355 ATCTCTCAGGCGTCGATTCT 58.314 50.000 0.00 0.00 0.00 2.40
2200 2280 3.620488 GATGGAGCCTGTAATTGTTCCA 58.380 45.455 2.28 2.28 38.90 3.53
2437 2526 2.170607 GGCTTGAACAGTAGCAGGGATA 59.829 50.000 0.00 0.00 39.15 2.59
2440 2529 4.202305 GCTTGAACAGTAGCAGGGATATCT 60.202 45.833 2.05 0.00 37.35 1.98
2441 2530 5.537188 CTTGAACAGTAGCAGGGATATCTC 58.463 45.833 2.05 0.00 0.00 2.75
2443 2532 3.913370 ACAGTAGCAGGGATATCTCCT 57.087 47.619 0.00 2.95 41.74 3.69
2445 2534 4.156477 ACAGTAGCAGGGATATCTCCTTC 58.844 47.826 9.37 6.05 41.74 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.811317 CTCTGGAACTGCGACCGC 60.811 66.667 7.53 7.53 42.35 5.68
6 7 2.435059 GCCTCTGGAACTGCGACC 60.435 66.667 0.00 0.00 0.00 4.79
7 8 2.435059 GGCCTCTGGAACTGCGAC 60.435 66.667 0.00 0.00 0.00 5.19
8 9 3.706373 GGGCCTCTGGAACTGCGA 61.706 66.667 0.84 0.00 0.00 5.10
9 10 3.335356 ATGGGCCTCTGGAACTGCG 62.335 63.158 4.53 0.00 0.00 5.18
10 11 1.751927 CATGGGCCTCTGGAACTGC 60.752 63.158 4.53 0.00 0.00 4.40
11 12 1.077212 CCATGGGCCTCTGGAACTG 60.077 63.158 17.74 0.00 34.24 3.16
12 13 2.988839 GCCATGGGCCTCTGGAACT 61.989 63.158 24.38 0.00 44.06 3.01
13 14 2.440980 GCCATGGGCCTCTGGAAC 60.441 66.667 24.38 8.28 44.06 3.62
45 46 3.788766 CAAGAAACTCGCCGGCCG 61.789 66.667 23.46 21.04 38.61 6.13
46 47 3.431725 CCAAGAAACTCGCCGGCC 61.432 66.667 23.46 5.24 0.00 6.13
47 48 4.103103 GCCAAGAAACTCGCCGGC 62.103 66.667 19.07 19.07 0.00 6.13
48 49 1.079405 TAGCCAAGAAACTCGCCGG 60.079 57.895 0.00 0.00 0.00 6.13
49 50 1.084370 CCTAGCCAAGAAACTCGCCG 61.084 60.000 0.00 0.00 0.00 6.46
50 51 0.744771 CCCTAGCCAAGAAACTCGCC 60.745 60.000 0.00 0.00 0.00 5.54
51 52 0.036294 ACCCTAGCCAAGAAACTCGC 60.036 55.000 0.00 0.00 0.00 5.03
52 53 2.474410 AACCCTAGCCAAGAAACTCG 57.526 50.000 0.00 0.00 0.00 4.18
53 54 2.820197 CCAAACCCTAGCCAAGAAACTC 59.180 50.000 0.00 0.00 0.00 3.01
54 55 2.490902 CCCAAACCCTAGCCAAGAAACT 60.491 50.000 0.00 0.00 0.00 2.66
55 56 1.893137 CCCAAACCCTAGCCAAGAAAC 59.107 52.381 0.00 0.00 0.00 2.78
56 57 1.783979 TCCCAAACCCTAGCCAAGAAA 59.216 47.619 0.00 0.00 0.00 2.52
57 58 1.354368 CTCCCAAACCCTAGCCAAGAA 59.646 52.381 0.00 0.00 0.00 2.52
58 59 0.991920 CTCCCAAACCCTAGCCAAGA 59.008 55.000 0.00 0.00 0.00 3.02
59 60 0.681243 GCTCCCAAACCCTAGCCAAG 60.681 60.000 0.00 0.00 0.00 3.61
60 61 1.382629 GCTCCCAAACCCTAGCCAA 59.617 57.895 0.00 0.00 0.00 4.52
61 62 1.850289 TGCTCCCAAACCCTAGCCA 60.850 57.895 0.00 0.00 33.99 4.75
62 63 1.077429 CTGCTCCCAAACCCTAGCC 60.077 63.158 0.00 0.00 33.99 3.93
63 64 1.077429 CCTGCTCCCAAACCCTAGC 60.077 63.158 0.00 0.00 35.51 3.42
64 65 1.077429 GCCTGCTCCCAAACCCTAG 60.077 63.158 0.00 0.00 0.00 3.02
65 66 2.966732 CGCCTGCTCCCAAACCCTA 61.967 63.158 0.00 0.00 0.00 3.53
66 67 4.351054 CGCCTGCTCCCAAACCCT 62.351 66.667 0.00 0.00 0.00 4.34
83 84 4.388499 TCCTCGAAACCCGGCAGC 62.388 66.667 0.00 0.00 39.14 5.25
84 85 2.125512 CTCCTCGAAACCCGGCAG 60.126 66.667 0.00 0.00 39.14 4.85
85 86 3.702048 CCTCCTCGAAACCCGGCA 61.702 66.667 0.00 0.00 39.14 5.69
87 88 4.468689 GGCCTCCTCGAAACCCGG 62.469 72.222 0.00 0.00 39.14 5.73
88 89 4.814294 CGGCCTCCTCGAAACCCG 62.814 72.222 0.00 0.00 40.25 5.28
109 110 4.250305 ACACTGTCCCACGCCACC 62.250 66.667 0.00 0.00 0.00 4.61
110 111 2.972505 CACACTGTCCCACGCCAC 60.973 66.667 0.00 0.00 0.00 5.01
111 112 4.248842 CCACACTGTCCCACGCCA 62.249 66.667 0.00 0.00 0.00 5.69
112 113 3.936203 TCCACACTGTCCCACGCC 61.936 66.667 0.00 0.00 0.00 5.68
113 114 2.665185 GTCCACACTGTCCCACGC 60.665 66.667 0.00 0.00 0.00 5.34
114 115 2.355837 CGTCCACACTGTCCCACG 60.356 66.667 0.00 0.00 0.00 4.94
115 116 1.300697 GTCGTCCACACTGTCCCAC 60.301 63.158 0.00 0.00 0.00 4.61
116 117 2.852180 CGTCGTCCACACTGTCCCA 61.852 63.158 0.00 0.00 0.00 4.37
117 118 2.049433 CGTCGTCCACACTGTCCC 60.049 66.667 0.00 0.00 0.00 4.46
118 119 1.371389 GTCGTCGTCCACACTGTCC 60.371 63.158 0.00 0.00 0.00 4.02
119 120 1.371389 GGTCGTCGTCCACACTGTC 60.371 63.158 3.49 0.00 0.00 3.51
120 121 2.726274 GGTCGTCGTCCACACTGT 59.274 61.111 3.49 0.00 0.00 3.55
121 122 2.049433 GGGTCGTCGTCCACACTG 60.049 66.667 10.68 0.00 0.00 3.66
122 123 3.667282 CGGGTCGTCGTCCACACT 61.667 66.667 10.68 0.00 0.00 3.55
123 124 3.969802 ACGGGTCGTCGTCCACAC 61.970 66.667 10.68 0.00 39.34 3.82
132 133 4.353437 GAAGCGTGGACGGGTCGT 62.353 66.667 0.71 0.00 45.10 4.34
134 135 4.754667 GGGAAGCGTGGACGGGTC 62.755 72.222 0.71 0.00 40.23 4.46
137 138 2.162338 TAAGTGGGAAGCGTGGACGG 62.162 60.000 0.71 0.00 40.23 4.79
138 139 0.320073 TTAAGTGGGAAGCGTGGACG 60.320 55.000 0.00 0.00 43.27 4.79
139 140 1.886886 TTTAAGTGGGAAGCGTGGAC 58.113 50.000 0.00 0.00 0.00 4.02
140 141 2.642154 TTTTAAGTGGGAAGCGTGGA 57.358 45.000 0.00 0.00 0.00 4.02
173 174 1.674611 CTGTCATCCGCACGTCGAAC 61.675 60.000 0.00 0.00 41.67 3.95
174 175 1.443702 CTGTCATCCGCACGTCGAA 60.444 57.895 0.00 0.00 41.67 3.71
175 176 2.178273 CTGTCATCCGCACGTCGA 59.822 61.111 0.00 0.00 41.67 4.20
176 177 1.869574 CTCTGTCATCCGCACGTCG 60.870 63.158 0.00 0.00 38.08 5.12
177 178 1.517257 CCTCTGTCATCCGCACGTC 60.517 63.158 0.00 0.00 0.00 4.34
178 179 2.573869 CCTCTGTCATCCGCACGT 59.426 61.111 0.00 0.00 0.00 4.49
179 180 2.202797 CCCTCTGTCATCCGCACG 60.203 66.667 0.00 0.00 0.00 5.34
180 181 2.187946 CCCCTCTGTCATCCGCAC 59.812 66.667 0.00 0.00 0.00 5.34
181 182 3.083349 CCCCCTCTGTCATCCGCA 61.083 66.667 0.00 0.00 0.00 5.69
182 183 4.554036 GCCCCCTCTGTCATCCGC 62.554 72.222 0.00 0.00 0.00 5.54
183 184 3.866582 GGCCCCCTCTGTCATCCG 61.867 72.222 0.00 0.00 0.00 4.18
184 185 3.866582 CGGCCCCCTCTGTCATCC 61.867 72.222 0.00 0.00 0.00 3.51
185 186 4.554036 GCGGCCCCCTCTGTCATC 62.554 72.222 0.00 0.00 0.00 2.92
205 206 1.129879 CAACATCAATGCGCACGAGC 61.130 55.000 14.90 0.00 37.71 5.03
206 207 0.521867 CCAACATCAATGCGCACGAG 60.522 55.000 14.90 5.59 0.00 4.18
207 208 1.501292 CCAACATCAATGCGCACGA 59.499 52.632 14.90 13.87 0.00 4.35
208 209 2.153945 GCCAACATCAATGCGCACG 61.154 57.895 14.90 7.41 0.00 5.34
209 210 1.806758 GGCCAACATCAATGCGCAC 60.807 57.895 14.90 0.00 0.00 5.34
210 211 2.572812 GGCCAACATCAATGCGCA 59.427 55.556 14.96 14.96 0.00 6.09
211 212 2.580326 CGGCCAACATCAATGCGC 60.580 61.111 2.24 0.00 0.00 6.09
212 213 2.102749 CCGGCCAACATCAATGCG 59.897 61.111 2.24 0.00 0.00 4.73
213 214 1.153784 CACCGGCCAACATCAATGC 60.154 57.895 0.00 0.00 0.00 3.56
214 215 1.512230 CCACCGGCCAACATCAATG 59.488 57.895 0.00 0.00 0.00 2.82
215 216 1.682005 CCCACCGGCCAACATCAAT 60.682 57.895 0.00 0.00 0.00 2.57
216 217 2.282816 CCCACCGGCCAACATCAA 60.283 61.111 0.00 0.00 0.00 2.57
217 218 3.253061 TCCCACCGGCCAACATCA 61.253 61.111 0.00 0.00 0.00 3.07
218 219 2.438434 CTCCCACCGGCCAACATC 60.438 66.667 0.00 0.00 0.00 3.06
219 220 4.047125 CCTCCCACCGGCCAACAT 62.047 66.667 0.00 0.00 0.00 2.71
221 222 3.324108 TACCTCCCACCGGCCAAC 61.324 66.667 0.00 0.00 0.00 3.77
222 223 3.006728 CTACCTCCCACCGGCCAA 61.007 66.667 0.00 0.00 0.00 4.52
225 226 3.782443 CACCTACCTCCCACCGGC 61.782 72.222 0.00 0.00 0.00 6.13
226 227 3.081409 CCACCTACCTCCCACCGG 61.081 72.222 0.00 0.00 0.00 5.28
227 228 3.782443 GCCACCTACCTCCCACCG 61.782 72.222 0.00 0.00 0.00 4.94
228 229 3.408853 GGCCACCTACCTCCCACC 61.409 72.222 0.00 0.00 0.00 4.61
229 230 3.782443 CGGCCACCTACCTCCCAC 61.782 72.222 2.24 0.00 0.00 4.61
233 234 4.162690 CAGGCGGCCACCTACCTC 62.163 72.222 23.09 0.00 38.26 3.85
277 278 4.364409 GACACCAAACGGACGCGC 62.364 66.667 5.73 0.00 0.00 6.86
278 279 3.708734 GGACACCAAACGGACGCG 61.709 66.667 3.53 3.53 0.00 6.01
279 280 3.708734 CGGACACCAAACGGACGC 61.709 66.667 0.00 0.00 0.00 5.19
280 281 2.279650 ACGGACACCAAACGGACG 60.280 61.111 0.00 0.00 0.00 4.79
281 282 2.305127 CGACGGACACCAAACGGAC 61.305 63.158 0.00 0.00 0.00 4.79
282 283 2.027897 CGACGGACACCAAACGGA 59.972 61.111 0.00 0.00 0.00 4.69
283 284 3.708734 GCGACGGACACCAAACGG 61.709 66.667 0.00 0.00 0.00 4.44
284 285 4.054455 CGCGACGGACACCAAACG 62.054 66.667 0.00 0.00 0.00 3.60
285 286 2.659244 TCGCGACGGACACCAAAC 60.659 61.111 3.71 0.00 0.00 2.93
286 287 2.659244 GTCGCGACGGACACCAAA 60.659 61.111 25.19 0.00 36.91 3.28
287 288 4.651008 GGTCGCGACGGACACCAA 62.651 66.667 30.99 0.00 38.70 3.67
290 291 4.651008 TTGGGTCGCGACGGACAC 62.651 66.667 30.99 17.52 40.81 3.67
291 292 3.914117 TTTGGGTCGCGACGGACA 61.914 61.111 30.99 25.40 38.70 4.02
292 293 3.408851 GTTTGGGTCGCGACGGAC 61.409 66.667 30.99 23.28 36.18 4.79
293 294 4.668118 GGTTTGGGTCGCGACGGA 62.668 66.667 30.99 18.10 0.00 4.69
304 305 3.145422 AAACTTGCGCCGGGTTTGG 62.145 57.895 17.28 0.00 32.84 3.28
305 306 1.948635 CAAACTTGCGCCGGGTTTG 60.949 57.895 24.29 24.29 42.01 2.93
306 307 2.415426 CAAACTTGCGCCGGGTTT 59.585 55.556 4.18 10.66 34.10 3.27
307 308 4.279043 GCAAACTTGCGCCGGGTT 62.279 61.111 4.18 4.28 45.11 4.11
316 317 1.069296 TCCATTTCGAGCGCAAACTTG 60.069 47.619 11.47 0.00 0.00 3.16
317 318 1.234821 TCCATTTCGAGCGCAAACTT 58.765 45.000 11.47 0.00 0.00 2.66
318 319 1.398390 GATCCATTTCGAGCGCAAACT 59.602 47.619 11.47 0.00 0.00 2.66
319 320 1.815132 GATCCATTTCGAGCGCAAAC 58.185 50.000 11.47 0.00 0.00 2.93
320 321 0.373370 CGATCCATTTCGAGCGCAAA 59.627 50.000 11.47 1.09 41.62 3.68
321 322 0.459411 TCGATCCATTTCGAGCGCAA 60.459 50.000 11.47 0.00 42.81 4.85
322 323 1.140804 TCGATCCATTTCGAGCGCA 59.859 52.632 11.47 0.00 42.81 6.09
323 324 4.012554 TCGATCCATTTCGAGCGC 57.987 55.556 0.00 0.00 42.81 5.92
327 328 1.038681 TCCGGGTCGATCCATTTCGA 61.039 55.000 16.61 0.00 45.27 3.71
328 329 0.033504 ATCCGGGTCGATCCATTTCG 59.966 55.000 16.61 0.00 40.46 3.46
329 330 2.036733 TGTATCCGGGTCGATCCATTTC 59.963 50.000 16.61 1.34 38.11 2.17
330 331 2.043992 TGTATCCGGGTCGATCCATTT 58.956 47.619 16.61 0.15 38.11 2.32
331 332 1.712056 TGTATCCGGGTCGATCCATT 58.288 50.000 16.61 0.55 38.11 3.16
332 333 1.712056 TTGTATCCGGGTCGATCCAT 58.288 50.000 16.61 3.97 38.11 3.41
333 334 1.487300 TTTGTATCCGGGTCGATCCA 58.513 50.000 16.61 0.00 38.11 3.41
334 335 2.207590 GTTTTGTATCCGGGTCGATCC 58.792 52.381 4.00 4.00 0.00 3.36
335 336 1.856597 CGTTTTGTATCCGGGTCGATC 59.143 52.381 0.00 0.00 0.00 3.69
336 337 1.472026 CCGTTTTGTATCCGGGTCGAT 60.472 52.381 0.00 0.00 38.09 3.59
337 338 0.108709 CCGTTTTGTATCCGGGTCGA 60.109 55.000 0.00 0.00 38.09 4.20
338 339 0.108709 TCCGTTTTGTATCCGGGTCG 60.109 55.000 0.00 0.00 41.98 4.79
339 340 1.338011 TGTCCGTTTTGTATCCGGGTC 60.338 52.381 0.00 0.00 41.98 4.46
340 341 0.686224 TGTCCGTTTTGTATCCGGGT 59.314 50.000 0.00 0.00 41.98 5.28
341 342 1.066716 TCTGTCCGTTTTGTATCCGGG 60.067 52.381 0.00 0.00 41.98 5.73
342 343 2.373540 TCTGTCCGTTTTGTATCCGG 57.626 50.000 0.00 0.00 43.03 5.14
343 344 3.063452 CCATTCTGTCCGTTTTGTATCCG 59.937 47.826 0.00 0.00 0.00 4.18
344 345 3.377172 CCCATTCTGTCCGTTTTGTATCC 59.623 47.826 0.00 0.00 0.00 2.59
345 346 4.007659 ACCCATTCTGTCCGTTTTGTATC 58.992 43.478 0.00 0.00 0.00 2.24
346 347 4.007659 GACCCATTCTGTCCGTTTTGTAT 58.992 43.478 0.00 0.00 0.00 2.29
347 348 3.404899 GACCCATTCTGTCCGTTTTGTA 58.595 45.455 0.00 0.00 0.00 2.41
348 349 2.227194 GACCCATTCTGTCCGTTTTGT 58.773 47.619 0.00 0.00 0.00 2.83
349 350 1.539827 GGACCCATTCTGTCCGTTTTG 59.460 52.381 0.00 0.00 42.63 2.44
350 351 1.905637 GGACCCATTCTGTCCGTTTT 58.094 50.000 0.00 0.00 42.63 2.43
351 352 3.644861 GGACCCATTCTGTCCGTTT 57.355 52.632 0.00 0.00 42.63 3.60
356 357 1.077429 GGCCTGGACCCATTCTGTC 60.077 63.158 0.00 0.00 0.00 3.51
357 358 2.971598 CGGCCTGGACCCATTCTGT 61.972 63.158 0.00 0.00 0.00 3.41
358 359 2.124570 CGGCCTGGACCCATTCTG 60.125 66.667 0.00 0.00 0.00 3.02
359 360 2.610859 ACGGCCTGGACCCATTCT 60.611 61.111 0.00 0.00 0.00 2.40
360 361 2.124695 GACGGCCTGGACCCATTC 60.125 66.667 0.00 0.00 0.00 2.67
361 362 4.096003 CGACGGCCTGGACCCATT 62.096 66.667 0.00 0.00 0.00 3.16
382 383 0.874175 GAACAAACAAGGCGGCCAAC 60.874 55.000 23.09 0.00 0.00 3.77
383 384 1.439644 GAACAAACAAGGCGGCCAA 59.560 52.632 23.09 0.00 0.00 4.52
384 385 2.494530 GGAACAAACAAGGCGGCCA 61.495 57.895 23.09 0.00 0.00 5.36
385 386 1.744320 AAGGAACAAACAAGGCGGCC 61.744 55.000 12.11 12.11 0.00 6.13
386 387 0.104120 AAAGGAACAAACAAGGCGGC 59.896 50.000 0.00 0.00 0.00 6.53
387 388 2.200899 CAAAAGGAACAAACAAGGCGG 58.799 47.619 0.00 0.00 0.00 6.13
388 389 1.592543 GCAAAAGGAACAAACAAGGCG 59.407 47.619 0.00 0.00 0.00 5.52
389 390 1.939934 GGCAAAAGGAACAAACAAGGC 59.060 47.619 0.00 0.00 0.00 4.35
390 391 3.118811 TGAGGCAAAAGGAACAAACAAGG 60.119 43.478 0.00 0.00 0.00 3.61
391 392 4.122143 TGAGGCAAAAGGAACAAACAAG 57.878 40.909 0.00 0.00 0.00 3.16
392 393 4.543590 TTGAGGCAAAAGGAACAAACAA 57.456 36.364 0.00 0.00 0.00 2.83
393 394 4.249661 GTTTGAGGCAAAAGGAACAAACA 58.750 39.130 0.00 0.00 43.25 2.83
394 395 3.305897 CGTTTGAGGCAAAAGGAACAAAC 59.694 43.478 0.00 0.00 41.60 2.93
395 396 3.516615 CGTTTGAGGCAAAAGGAACAAA 58.483 40.909 0.00 0.00 35.03 2.83
396 397 3.157932 CGTTTGAGGCAAAAGGAACAA 57.842 42.857 0.00 0.00 35.03 2.83
397 398 2.861462 CGTTTGAGGCAAAAGGAACA 57.139 45.000 0.00 0.00 35.03 3.18
402 403 2.423538 CCCTATCCGTTTGAGGCAAAAG 59.576 50.000 0.00 0.00 35.03 2.27
403 404 2.442413 CCCTATCCGTTTGAGGCAAAA 58.558 47.619 0.00 0.00 35.03 2.44
404 405 1.953311 GCCCTATCCGTTTGAGGCAAA 60.953 52.381 0.00 0.00 40.20 3.68
405 406 0.393808 GCCCTATCCGTTTGAGGCAA 60.394 55.000 0.00 0.00 40.20 4.52
406 407 1.223487 GCCCTATCCGTTTGAGGCA 59.777 57.895 0.00 0.00 40.20 4.75
407 408 1.526225 GGCCCTATCCGTTTGAGGC 60.526 63.158 0.00 0.00 39.73 4.70
408 409 1.227556 CGGCCCTATCCGTTTGAGG 60.228 63.158 0.00 0.00 44.18 3.86
409 410 4.438346 CGGCCCTATCCGTTTGAG 57.562 61.111 0.00 0.00 44.18 3.02
416 417 0.252103 TATCCTGTCCGGCCCTATCC 60.252 60.000 0.00 0.00 0.00 2.59
417 418 1.550976 CTTATCCTGTCCGGCCCTATC 59.449 57.143 0.00 0.00 0.00 2.08
418 419 1.645710 CTTATCCTGTCCGGCCCTAT 58.354 55.000 0.00 0.00 0.00 2.57
419 420 0.471211 CCTTATCCTGTCCGGCCCTA 60.471 60.000 0.00 0.00 0.00 3.53
420 421 1.766461 CCTTATCCTGTCCGGCCCT 60.766 63.158 0.00 0.00 0.00 5.19
421 422 2.070650 ACCTTATCCTGTCCGGCCC 61.071 63.158 0.00 0.00 0.00 5.80
422 423 1.146263 CACCTTATCCTGTCCGGCC 59.854 63.158 0.00 0.00 0.00 6.13
423 424 1.146263 CCACCTTATCCTGTCCGGC 59.854 63.158 0.00 0.00 0.00 6.13
424 425 0.178068 CACCACCTTATCCTGTCCGG 59.822 60.000 0.00 0.00 0.00 5.14
425 426 0.462047 GCACCACCTTATCCTGTCCG 60.462 60.000 0.00 0.00 0.00 4.79
426 427 0.462047 CGCACCACCTTATCCTGTCC 60.462 60.000 0.00 0.00 0.00 4.02
427 428 0.462047 CCGCACCACCTTATCCTGTC 60.462 60.000 0.00 0.00 0.00 3.51
428 429 1.198759 ACCGCACCACCTTATCCTGT 61.199 55.000 0.00 0.00 0.00 4.00
429 430 0.744414 CACCGCACCACCTTATCCTG 60.744 60.000 0.00 0.00 0.00 3.86
430 431 1.602237 CACCGCACCACCTTATCCT 59.398 57.895 0.00 0.00 0.00 3.24
431 432 1.451387 CCACCGCACCACCTTATCC 60.451 63.158 0.00 0.00 0.00 2.59
432 433 0.462047 CTCCACCGCACCACCTTATC 60.462 60.000 0.00 0.00 0.00 1.75
433 434 1.198759 ACTCCACCGCACCACCTTAT 61.199 55.000 0.00 0.00 0.00 1.73
434 435 1.412453 AACTCCACCGCACCACCTTA 61.412 55.000 0.00 0.00 0.00 2.69
435 436 2.752807 AACTCCACCGCACCACCTT 61.753 57.895 0.00 0.00 0.00 3.50
436 437 3.168528 AACTCCACCGCACCACCT 61.169 61.111 0.00 0.00 0.00 4.00
437 438 2.978010 CAACTCCACCGCACCACC 60.978 66.667 0.00 0.00 0.00 4.61
438 439 2.978010 CCAACTCCACCGCACCAC 60.978 66.667 0.00 0.00 0.00 4.16
439 440 4.947147 GCCAACTCCACCGCACCA 62.947 66.667 0.00 0.00 0.00 4.17
441 442 2.741486 TAAGGCCAACTCCACCGCAC 62.741 60.000 5.01 0.00 0.00 5.34
442 443 2.463589 CTAAGGCCAACTCCACCGCA 62.464 60.000 5.01 0.00 0.00 5.69
443 444 1.745489 CTAAGGCCAACTCCACCGC 60.745 63.158 5.01 0.00 0.00 5.68
444 445 0.391263 GTCTAAGGCCAACTCCACCG 60.391 60.000 5.01 0.00 0.00 4.94
445 446 0.035343 GGTCTAAGGCCAACTCCACC 60.035 60.000 5.01 0.00 0.00 4.61
446 447 0.035343 GGGTCTAAGGCCAACTCCAC 60.035 60.000 5.01 0.00 0.00 4.02
447 448 1.550130 CGGGTCTAAGGCCAACTCCA 61.550 60.000 5.01 0.00 0.00 3.86
448 449 1.221021 CGGGTCTAAGGCCAACTCC 59.779 63.158 5.01 0.00 0.00 3.85
449 450 0.831307 ATCGGGTCTAAGGCCAACTC 59.169 55.000 5.01 0.00 0.00 3.01
450 451 0.541863 CATCGGGTCTAAGGCCAACT 59.458 55.000 5.01 0.00 0.00 3.16
451 452 0.463833 CCATCGGGTCTAAGGCCAAC 60.464 60.000 5.01 0.00 0.00 3.77
452 453 1.632018 CCCATCGGGTCTAAGGCCAA 61.632 60.000 5.01 0.00 38.25 4.52
453 454 2.070039 CCCATCGGGTCTAAGGCCA 61.070 63.158 5.01 0.00 38.25 5.36
454 455 2.829592 CCCATCGGGTCTAAGGCC 59.170 66.667 0.00 0.00 38.25 5.19
455 456 2.111251 GCCCATCGGGTCTAAGGC 59.889 66.667 0.06 0.00 46.51 4.35
456 457 2.421739 CGCCCATCGGGTCTAAGG 59.578 66.667 0.06 0.00 46.51 2.69
457 458 2.280186 GCGCCCATCGGGTCTAAG 60.280 66.667 0.00 0.00 46.51 2.18
458 459 3.078196 TGCGCCCATCGGGTCTAA 61.078 61.111 4.18 0.00 46.51 2.10
459 460 3.845259 GTGCGCCCATCGGGTCTA 61.845 66.667 4.18 0.00 46.51 2.59
464 465 4.457496 AGTCTGTGCGCCCATCGG 62.457 66.667 4.18 0.00 38.94 4.18
465 466 3.190849 CAGTCTGTGCGCCCATCG 61.191 66.667 4.18 0.00 42.12 3.84
466 467 3.503363 GCAGTCTGTGCGCCCATC 61.503 66.667 4.18 0.00 43.99 3.51
474 475 2.842394 AATCCGGCTCGCAGTCTGTG 62.842 60.000 7.09 7.09 0.00 3.66
475 476 2.650116 AATCCGGCTCGCAGTCTGT 61.650 57.895 0.00 0.00 0.00 3.41
476 477 2.169789 CAATCCGGCTCGCAGTCTG 61.170 63.158 0.00 0.00 0.00 3.51
477 478 2.185350 CAATCCGGCTCGCAGTCT 59.815 61.111 0.00 0.00 0.00 3.24
478 479 3.567797 GCAATCCGGCTCGCAGTC 61.568 66.667 0.00 0.00 0.00 3.51
479 480 4.087892 AGCAATCCGGCTCGCAGT 62.088 61.111 0.00 0.00 41.05 4.40
480 481 3.570638 CAGCAATCCGGCTCGCAG 61.571 66.667 0.00 0.00 43.68 5.18
483 484 3.570638 CAGCAGCAATCCGGCTCG 61.571 66.667 0.00 0.00 43.34 5.03
484 485 3.885521 GCAGCAGCAATCCGGCTC 61.886 66.667 0.00 0.00 43.34 4.70
523 524 4.803426 CTGGCTCGCTCGGGTCAC 62.803 72.222 0.00 0.00 0.00 3.67
563 564 0.816018 TGCCGTGTTTGTGGGTGTAG 60.816 55.000 0.00 0.00 0.00 2.74
564 565 0.393944 TTGCCGTGTTTGTGGGTGTA 60.394 50.000 0.00 0.00 0.00 2.90
574 578 1.137825 CGTGTGGTTTTGCCGTGTT 59.862 52.632 0.00 0.00 41.21 3.32
582 586 2.520741 CTGGGGCCGTGTGGTTTT 60.521 61.111 0.00 0.00 37.67 2.43
646 653 1.696884 GCATAAAGGAGAGAGAGGGGG 59.303 57.143 0.00 0.00 0.00 5.40
811 832 3.480133 GGCTAGGTGGGCGGTGAT 61.480 66.667 0.00 0.00 0.00 3.06
817 838 4.228567 GAGAGCGGCTAGGTGGGC 62.229 72.222 0.60 0.00 0.00 5.36
818 839 3.905678 CGAGAGCGGCTAGGTGGG 61.906 72.222 0.60 0.00 0.00 4.61
848 869 2.508526 GAGGGAGAAGAAAGCAAAGCA 58.491 47.619 0.00 0.00 0.00 3.91
901 930 1.949847 GCAGGCTAGCTCGAGGACAA 61.950 60.000 15.72 0.00 0.00 3.18
1030 1060 4.154347 GTGGAGGAGGAGCGCCAG 62.154 72.222 9.88 0.00 36.29 4.85
1475 1518 4.080129 AGGGCATGAAGGGCATACATATAG 60.080 45.833 0.00 0.00 34.82 1.31
1476 1519 3.851976 AGGGCATGAAGGGCATACATATA 59.148 43.478 0.00 0.00 34.82 0.86
1477 1520 2.651334 AGGGCATGAAGGGCATACATAT 59.349 45.455 0.00 0.00 34.82 1.78
1478 1521 2.065007 AGGGCATGAAGGGCATACATA 58.935 47.619 0.00 0.00 34.82 2.29
1479 1522 0.855598 AGGGCATGAAGGGCATACAT 59.144 50.000 0.00 0.00 34.82 2.29
1480 1523 0.106569 CAGGGCATGAAGGGCATACA 60.107 55.000 0.00 0.00 34.82 2.29
1481 1524 0.183492 TCAGGGCATGAAGGGCATAC 59.817 55.000 0.00 0.00 34.82 2.39
1482 1525 1.151760 ATCAGGGCATGAAGGGCATA 58.848 50.000 5.73 0.00 42.53 3.14
1483 1526 0.469331 CATCAGGGCATGAAGGGCAT 60.469 55.000 5.73 0.00 42.53 4.40
1484 1527 1.076559 CATCAGGGCATGAAGGGCA 60.077 57.895 5.73 0.00 42.53 5.36
1485 1528 2.496291 GCATCAGGGCATGAAGGGC 61.496 63.158 5.73 7.00 42.53 5.19
1486 1529 1.107538 CAGCATCAGGGCATGAAGGG 61.108 60.000 5.73 0.00 42.53 3.95
1487 1530 1.735376 GCAGCATCAGGGCATGAAGG 61.735 60.000 5.73 2.65 42.53 3.46
1488 1531 0.752009 AGCAGCATCAGGGCATGAAG 60.752 55.000 5.73 2.24 42.53 3.02
1489 1532 0.750546 GAGCAGCATCAGGGCATGAA 60.751 55.000 5.73 0.00 42.53 2.57
1490 1533 1.153025 GAGCAGCATCAGGGCATGA 60.153 57.895 3.57 3.57 43.70 3.07
1491 1534 2.194212 GGAGCAGCATCAGGGCATG 61.194 63.158 0.00 0.00 35.83 4.06
1492 1535 2.195139 GGAGCAGCATCAGGGCAT 59.805 61.111 0.00 0.00 35.83 4.40
1493 1536 4.119363 GGGAGCAGCATCAGGGCA 62.119 66.667 0.00 0.00 35.83 5.36
1494 1537 3.650298 TTGGGAGCAGCATCAGGGC 62.650 63.158 0.00 0.00 0.00 5.19
1511 1555 1.153706 CGTAATGGCGGACCGAGTT 60.154 57.895 20.50 10.86 39.70 3.01
1605 1653 4.641645 CCCTCTGGTTGCCGTGCA 62.642 66.667 0.00 0.00 36.47 4.57
1678 1738 2.597455 ACCCTCCATGTTTGGTTTCTG 58.403 47.619 0.00 0.00 44.06 3.02
1697 1757 9.042008 ACAATGTTATTACATACATCGAGGAAC 57.958 33.333 3.06 0.00 44.14 3.62
1802 1865 5.995897 TGAACGAACTATCTCGATCCATCTA 59.004 40.000 0.00 0.00 41.44 1.98
1817 1880 1.198178 GAGAGAGAGCGTGAACGAACT 59.802 52.381 7.10 4.58 43.02 3.01
1842 1907 1.813786 ACTCGAGAAGGAGAAGAACCG 59.186 52.381 21.68 0.00 37.49 4.44
1930 2001 4.944317 GGAAGGTGTTTATCCAGGAGAAAG 59.056 45.833 9.65 0.00 33.30 2.62
1942 2013 2.871096 AATGGCGAGGAAGGTGTTTA 57.129 45.000 0.00 0.00 0.00 2.01
1943 2014 1.995376 AAATGGCGAGGAAGGTGTTT 58.005 45.000 0.00 0.00 0.00 2.83
1948 2019 0.453390 GAGCAAAATGGCGAGGAAGG 59.547 55.000 0.00 0.00 39.27 3.46
1968 2039 3.488047 CGGAAATGAAGCATGCTCGAATT 60.488 43.478 22.93 17.23 0.00 2.17
1969 2040 2.032550 CGGAAATGAAGCATGCTCGAAT 59.967 45.455 22.93 12.09 0.00 3.34
1998 2070 6.824196 TGGTGGTTAGTTTCGCATATTGAATA 59.176 34.615 0.00 0.00 0.00 1.75
2000 2072 5.004448 TGGTGGTTAGTTTCGCATATTGAA 58.996 37.500 0.00 0.00 0.00 2.69
2004 2076 3.372822 CGTTGGTGGTTAGTTTCGCATAT 59.627 43.478 0.00 0.00 0.00 1.78
2010 2082 1.070376 GCGTCGTTGGTGGTTAGTTTC 60.070 52.381 0.00 0.00 0.00 2.78
2022 2094 3.295228 CTCGGCCAAAGCGTCGTTG 62.295 63.158 2.24 0.00 41.24 4.10
2025 2097 3.777925 CACTCGGCCAAAGCGTCG 61.778 66.667 2.24 0.00 41.24 5.12
2239 2320 3.552890 GGAGATTGTTTCTTTGGGTGTGC 60.553 47.826 0.00 0.00 33.74 4.57
2295 2383 1.951209 TGTGCTGGGAAGATGGAGTA 58.049 50.000 0.00 0.00 0.00 2.59
2351 2440 3.189702 TGTACGCGCTCATACTATATGCA 59.810 43.478 5.73 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.