>input_sequence_80111
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---------------------------------------------------------------------ATGGGCTGGGC
GAGCCGGCGCGGCCTCGCCCTGGCGCTCCTCCTCCACCTCCTCTTCCTCGCCGCTGCCCTCGGTAAGACAGCCAGCGACA
TGCACTTTCTCCGTGTTTCTTCGGCATTATATACATGGCGAGCTCTAGCTCACACGTACGTG---CGCACATGTGCG--T
GTCTCCTGCAGGTGGGTGCGCAGCGACGAGCCGGAGGAGCGGCAGCAGCGGCGGTAAAGCAGCGCTTGAGCAGTACTCGT
GGGGGGACCCTGCGGAGGCGGCGCGGCGGAGGGAGCTGGTGGGCCCGGGATCGTCGCCGCCGACGTGCCGGAGCCGGTGC
GGGCGGTGCCACCCGTGCCGGCCGGTGCACGTGGCCATCCAGCCCGGCGTCAGCTTCCCGCTCGAGTACTACCCGGAGGC
CTGGCGCTGCAAGTGCGGCGACAGGCTCTTCATGCCATGA----------------------------------------
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>chr4B_1_TraesCS4B01G277700
CTTTGCGGTCGCAGTTCCAGAGGCCCATGGCTGCGGGCGGGCGGCCGGCCGGCGAGTTTCTTGGCTAGGGTTTGGGAGCA
GGCGCTGCCGGGTTTCGAGGAGGCCGCGGGGTGGCGTGGGACAGTGTGGACGACGACCCGTCCACGCTTCCCACTTAAAA
AAGGACGGCGCCCGTTCGACGTGCGGATGACAGAGGGGGCCGCCCGCTCGTGCGCATTGATGTTGGCCGGTGGGAGGTAG
GTGGCCGCCTGCCACGCGGCCTCGACGCGGACGATGCGCGCGTCCGTTTGGTGTCCGTCGCGACCCAAACCCGGCGCAAG
TTTGCGCTCGAAATGGATCGACCCGGATACAAAACGGACAGAATGGGTCCAGGCCGTCGCGCGTTGGCCGCCTTGTTTGT
TCCTTTTGCCTCAAACGGATAGGGCCGGACAGGATAAGGTGGTGCGGTGGAGTTGGCCTTAGACCCGATGGGCGCACAGA
CTGCGAGCCGGATTGCTGCTGCCGCCGCTTGGCCCGGCCGCGCGTGACCCGAGCGAGCCAGCCACCACGCGGTGGCGCCG
GCGCT---ACACCCACAAACACGGCAAAACCACACGGCCCCAGCCGGCCCCAGCTCTGGATTTCTCTCTCT---TTATCT
CTCCTCTCCCTCCCCC---------CTCTCTCTCCTTTATGCCTCCGGCGCTGCAGAGCCCGCACGCACGGTCCATGACT
ACTCCGTGCGTGCGTGCGGATTGACTCGCGCGCGCACACAAACGCC-----ACTCCACCCCCTTCCGTCCGCGTCAGTCC
CCCTCGTGCACCGCAGCAGCAGCCAGCGGCAATCACCGCCCACCTAGCCGCTCTCGCTCTGCTTTTCTTGCTTTGCTTTC
TTCTCCC-----TC---CTGCTCCCCCCTCACCGGTCACCACCTCCGGCTTGTCCTCGAGCTAGCCTGCCAGGCGCGACA
CCGACGCCGGCCGCTGGGTGGGTG-TACGAGATCTGGTGACCTAGCTGTGCGGAGGCGCTCGGCCACCCATGGGCTGGGC
GAGCCGGCGCGGCCTCGCCCTGGCGCTCCTCCTCCACCTCCTCTTCCTCGCCGCTGCCCTCGGTAAGACAGCCAGCGACA
TGCACTTTCTCCGTGTTTCTTCGGCATTATATACATGGCGAGCTCTAGCTCACACGTACGTG---CGCACATGTGCG--T
GTCTCCTGCAGGTGGGTGCGCAGCGACGAGCCGGAGGAGCGGCAGCAGCGGCGGTAAAGCAGCGCTTGAGCAGTACTCGT
GGGGGGACCCTGCGGAGGCGGCGCGGCGGAGGGAGCTGGTGGGCCCGGGATCGTCGCCGCCGACGTGCCGGAGCCGGTGC
GGGCGGTGCCACCCGTGCCGGCCGGTGCACGTGGCCATCCAGCCCGGCGTCAGCTTCCCGCTCGAGTACTACCCGGAGGC
CTGGCGCTGCAAGTGCGGCGACAGGCTCTTCATGCCATGA--------CCGTCAGCCCACAGCTCCGTCTGCACATACTA
TATGTATGCCCTTCATGCCC-TGATGCTGCTCCCAACTCGGTCCGCCATTACGGCTGCTTCAGCTCACTCGCGGGAGCTA
GCTCTTCAAGGCTACGGCG----GCGCGCACAAGGCCAGGAGATCGAGCACATGCACGGCAACCAGAGGGATCTAGCTAG
AGAAGAAGA------------GGGAGCAGAGCGCAGAGAGATCCATGGAATCATGGACAGAAACCAAACATGGAGGGTTC
CTC---GATGTATGTAATAACATTGTTCAGTTCTTGGAGATTTTAACCAGTGTGATGTTGTAATTAGCTAGCCGGTCGTG
TCTTGTCGGGTCCGAAGAGGTGGATAGATGGATCGAGATAGTTCGTTCA--CGCTCTCTCTCTCTCCGGTTCTTCTCCTT
CTCGAGTC------GCCAAGCCAACTTCCGGTTTTGAGGAGTGATTTTCCAACTAATTTTCGTCAATCTATGCCGTGATA
CTTTCTCCTGGATAAACACCTTCCTCGCCATTTTGCTCAA-TTCGAGCATGCTTCATTTCCGTAAAAAATATTCAATATG
CGAAACTAACCACCAACGACGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGT
TCGAATCTCTCAGGCGTCGATTCTTTTTCTTC-TTATTTTTTACGCTGGATGTCTCCAAATTTT----AATTCCCACCA-
--GCGTTTTCCATGTCTGGATGGAGCCTGTAATTGTTCCAGGGATTCCCTGGATCTTGTGGCCGGTGCACG-CACCACAG
CACACCCAAAGAAAC-------AATCTCCCCCATGAAAAACTTCAGAACAATTTCTTATCCTTACTCCATCTTC-CCAGC
ACAAGCGCACTCCATGGCAGGGCATGTGCCTCGCAGAGCTGCATATAGTATGAGCGCGTACAGAAAACCATGGATAGGCG
CCCGGGCAAGCCCCCAAAAGATCAGGCTTGAACAGTAGCAGGGATATCTCCTTC
>chr4A_546
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-----------------------------------------------------------------CACGCGGTGACGCCG
GCGGCACCACACCCACAGACACGGCGAGACCACA----------CGGCCCCAGCTCTGGATTTCTCTCTCTATATTATCT
CTCCTCTCACTCTCCCCCCCTCTCTCCCTCTCTCCTTTATGGCTCCGGCGCTGCAGAGCCCGCACGCACAGTCCATGACT
ACTCCGTGCGTGCGTGCGGATTGACTCGCGCGCGCACACAAACGCCACTCCACCCCACCCCCTTCCGTCCGCGTCAGTCC
CCCTCGTGCACCGCAGCAGCAGCCAGCGGCATTCAGC---------GCCGCTCTCGCTCTGCTTTTCTCGCTTTGCTTTC
TTCTCCC-----TCCTGCTGCTCCCCCCTCGCCGGTCACCACCTCCGGCCTGTCCTCGAGCTAGCCTGCCAGGCGCGACA
CAGACGCCGGACGCTCGGTGGGTGATACGAGATCTGGTGGGCTAGCTGAGCGGAGACGCTCGGCCACCTATGGGCTGGGC
GAGCCGGCGCGGCCTCGCCGCGGCGCTCCTCCTCCACCTCCTCTTCCTCGCCGCTGCCCTCGGTAAGACAGCCAGCGACA
TGCACTTTCTCCGTGTTTCTTCGGCATTATATACAAGGCGAGCTCTAGCTCACACGTACGTGCGCCGCGCATGTGTA--T
GTCTCCTGCAGGTGGGTGCGCCGCGACGAGCCGGAGGAGCGGCAGCAGCGGCGGTAGAGCAGCGCTGGAGCAGTACTCGT
GGGAGGACCCTGCGGAGGCGGCGCGGCGGAGGGAGCTGGTGGGCCCGGGCTCGTCGCCGCCGACGTGCCGGAGCCGGTGC
GGGCGGTGCCACCCGTGCCGGCCGGTGCACGTGGCCATCCAGCCCGGCGTCAGCTTCCCGCTCGAGTACTACCCGGAGGC
CTGGCGCTGCAAGTGCGGCGACAGGCTCTTCATGCCATGA--------CCGCCCGTCCACGGCTCCGTCTGCACATATAT
GTATG------------CCC-TGATGCTGCTCCCGGCTCGGTCCGCCATTACGGCTGCTTCAGCTCACTCACGGGAGCTA
GCTCCTCAAGGCCACGGCTGCCTGCGCGCACAAGGCCAGGAGGTCCAGCACACGCACGGCAACCAGAGGGATCTAGCTAG
AGAAGAAGAAGAAGAAGAAGAGGGAGCGGAGCGCAGAGAGATCCATGGAACCATGGAAAGAAACCAAACATGGAGGCTTC
CTCCTCGATGTATGTAATAACATTGTTCAGTTCTTGGAGATTTTAACCAGTGTCTTGTC---------------------
----GTCGCGTCCGAAGAGGTGGAGAGATGGATCGAGATTGTTCGTTCA--CG--CTCTCTCTCTCTGGTTCTTCTCCTT
GTCGAGTC------GCCAAGCCAACTTCCGGTTTTGAGGAGTGATTTTCCGACTAATTTTCGTTAATCTATGATGT-ATA
TTTCCTCATGGAC-AACATCTTCCTCATCATTTTGCTCTG-TTCGAGCATGCTTCCTTA-CGTATAAAAGAGCCAGTATG
CCAAACTAGCCACAAAAGACGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGT
TCGAATCTCTCAGGCGTCGATTG-TTTCCCTC-CTTTTTTTTACGCTGGATCTCTCCAAATTTTCACTTCCTGCTACTAC
ACGCGTTTTCCATGTCTGGATGGAGCCTGTAATTGTTCTTGGGATTCCCTGGATCTTGTGGCCAGTTCAATACACCACAC
CACACCCAAAGAAACAAGAAACAATCTCCCCCATGAAAAAGTTCAGAACAATTTCTTATCCTCACTCCATCCGTTCCAGC
ACAAGCGCACTCCATGGCAGGGCATGTGCCTCGTAGAGCCGCATATAGTATGAGCGCGTACAGAAAACCATGGCTAGGCC
CCC---------------------------------------------------
>chr4D_643
CCTCACCTC-----------------------------------------------------------------------
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-----------------------CTCTCTCTCTCCTTTATGCCTCCGGCGCTGCAGAGCCCGCACGCACGGTCCATGACT
ACTCCGTGCGTGCGTGCGGATTGACTCGCGCGCACACACAAACGCCACTCCACTCCACCCCCTTCCGTCCGCGTCAGTCC
CCCTCGTGCACGGCAGCAGCACCCAGCGGCATTCAGC---------GCCGCTCTCGCTCTGCTTT--------------C
TTCTCCCTCCTGTC---CTGCTCCCCCCTCACCGGTCACCACCTCCGGCCCGTCCTCGAGCTAGCCCGCCAGGCGCGACA
CCTACGCCGGCCGCTGGGTGGGTG-TACGAGATCTGGTGACCTAGCTGAGCGGAGACGCTCGGCCACCCATGGGCTGGGC
GAGCCGGCGCGGCCTCGCCGCGGCGCTCCTCCTGCACCTCCTCTTCCTCGCCGCTGCCCTCGGTAAGACAGCCAGCGACA
TGCACTTTCTCCGTGTTTCTACGGCATTACATACATGGCGAGCTCTAGCTCACACGTACGCGCGC---ACATGTGCGTGT
GTCTCCTGCAGGTGGGTGCGCCGCGACGAGCCGGTGGAGCGGCGGCGGCGGCGGTAAAGCAGCCCTTGAGCAGTACTCGT
GGGTGGAGCCTGCGGAGGAGGCGCGGCGGAGGGAGCTGGTGGGCCCGGGCTCGTCGCCGCCGACGTGCCGGAGCCGGTGC
GGGCGGTGCCACCCGTGCCGGCCGGTGCACGTGGCCATCCAGCCCGGCGTCAGCTTCCCGCTCGAGTACTACCCGGAGGC
CTGGCGCTGCAAGTGCGGCGACAGGCTCTTCATGCCATGAGCCCATGACCGTCCGCCCACAGCTCCGTCTGCACATATAT
GTATG------------CCCTTGATGCTGCTCCCGACTCGGTCCGCCATTACGGCTGCTTCAGCTCACTCGCGGGAGCTA
GCTCTTCAAGGCTACGGCG----GCGCGCACAAGGCCAGGAGGTCGAGCACACGCACGGCAACCAGAGGGATCTAGCTAG
AGAAGA---------AGAAGAGGGAGCAGAGCGCAGAGAGATCCATGGAATCATGGGAAGAAACCAAACATGGAGGCTTC
CTCCTCGATGTATGTAATAACATTGTTCAGTTCTTGGAGATTTTAACCAGTGTGATGTTGTAATTAGCTAGCCGGTCGTG
TCTTGTCGGGTCCGAAGAGGTGGAGAGATGGATCGAGATTGTTCGTTCACGCGCTCTCTCTCTCTCTGGTTCTTCTCCTT
CTCGAGTCGCCAAGGCCAAGCCAACTTCCGGTTTTGAGGAGTGATTTTCCAATTAATTTTCGTCAATCTATGCCGTGATA
TTTTCTCCTGGAC-GACATCTTCCTCATCATTTTGCTCTGTTTCGAGCATGCTTCCTTT-CGTAGAAAAGGCTCAGTATG
CCCGTGTAAATACAAAAGACGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGT
TCGAATCTCTCAGGCGTCGATTCCTTTTCTCCTTTATTTTTAACGCTGGATGTCTCCAAACTTTTACTAATTCCCACCA-
--GCGTTTTCCATGTCTGGATGGAGCCTGTAATTGTTCCTGGGATT-CCTGGATCTTGTGGCCGGTGCACG-CACCACAC
CACACCGAAAGAAAC-------AATCTCCCCCATGAAGAACTTCAGAACAATTTCTTATCCTCACTCCATCTTC-CCAGC
ACAAGCGCACTCCATGGCAGGGCATGTGCCTCGCAGAGCCGCATATAGTATGAGCGCGTACAGAAAACCATGGATAGGCG
CCCGGGCAAGCCCCCAAAAGATCAGGCTTGAACAGTAGCAGGGATTTCCTCCT-
>SNPs
-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----
---SS------------S-------S-S------SSSSSSSSSS------------------------------------
--------S---S-------------------------------------------------------------------
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-------------------------------S---S-SSSSSSSSS----------------------S-----------
-------------------------------------------------S------------------------------
------------------------------------------------S------S------------------------
-------------------SS-----------------------------------------------------------
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---------------------S----------------------------------------------------------
---S---------------------------------------------S------------------------------
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-----------------------------------------------------S-----------------------SSS
SSSSSSSSSSSSSSSSS-----------------S---------------------------------------------
------------------------------------------S---------S---------------------------
---------------------------------------------------------S------------------S---
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------------------------S--------------S--------------------------S-------------
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S-----------SS----S-------SS----------SS---------------S---S----S----S-S---S----
-S-----------S--S---------------------------------------------------------------
-----------------------S--------------------------------------------------------
---------------------------------------S---------------------------------------S
--------------------------------------------------------------S-----------------
---------------------------------------S----------------------------------------
---------------------------------------------S--SS-S-S
>forward_348
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--------CGAAATGGATCGACCCGGAT----------------------------------------------------
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>reverse_1523
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--TGTATGCCCTTCATGCCCTG----------------------------------------------------------
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