Multiple sequence alignment - TraesCS4B01G272900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G272900 chr4B 100.000 2816 0 0 1 2816 550519802 550522617 0.000000e+00 5201.0
1 TraesCS4B01G272900 chr4B 99.123 114 1 0 644 757 550520408 550520521 3.680000e-49 206.0
2 TraesCS4B01G272900 chr4B 99.123 114 1 0 607 720 550520445 550520558 3.680000e-49 206.0
3 TraesCS4B01G272900 chr4B 98.701 77 1 0 681 757 550520408 550520484 1.360000e-28 137.0
4 TraesCS4B01G272900 chr4B 98.701 77 1 0 607 683 550520482 550520558 1.360000e-28 137.0
5 TraesCS4B01G272900 chr4B 97.500 40 1 0 718 757 550520408 550520447 5.030000e-08 69.4
6 TraesCS4B01G272900 chr4B 97.500 40 1 0 607 646 550520519 550520558 5.030000e-08 69.4
7 TraesCS4B01G272900 chr4D 94.762 1279 37 11 718 1972 442434891 442436163 0.000000e+00 1964.0
8 TraesCS4B01G272900 chr4D 86.576 812 88 13 1993 2791 442436446 442437249 0.000000e+00 876.0
9 TraesCS4B01G272900 chr4D 100.000 84 0 0 554 637 442434838 442434921 3.760000e-34 156.0
10 TraesCS4B01G272900 chr4D 80.451 133 14 5 398 530 442433479 442433599 1.070000e-14 91.6
11 TraesCS4B01G272900 chr4D 96.774 31 1 0 644 674 442434891 442434921 5.000000e-03 52.8
12 TraesCS4B01G272900 chr4D 96.774 31 1 0 681 711 442434891 442434921 5.000000e-03 52.8
13 TraesCS4B01G272900 chr4A 94.264 1203 40 9 721 1910 24912380 24911194 0.000000e+00 1812.0
14 TraesCS4B01G272900 chr4A 80.899 267 28 9 394 637 24912619 24912353 3.700000e-44 189.0
15 TraesCS4B01G272900 chr4A 84.663 163 16 6 243 398 445992499 445992339 1.350000e-33 154.0
16 TraesCS4B01G272900 chr4A 100.000 28 0 0 684 711 24912380 24912353 5.000000e-03 52.8
17 TraesCS4B01G272900 chr4A 100.000 28 0 0 647 674 24912380 24912353 5.000000e-03 52.8
18 TraesCS4B01G272900 chr7A 96.341 246 9 0 1 246 671410065 671409820 3.380000e-109 405.0
19 TraesCS4B01G272900 chr2D 95.528 246 11 0 1 246 82870643 82870398 7.310000e-106 394.0
20 TraesCS4B01G272900 chr5B 95.556 225 9 1 1 224 696238755 696238531 2.670000e-95 359.0
21 TraesCS4B01G272900 chr5B 95.089 224 11 0 18 241 473808236 473808459 1.240000e-93 353.0
22 TraesCS4B01G272900 chr5B 85.987 157 16 3 245 396 210907366 210907211 2.240000e-36 163.0
23 TraesCS4B01G272900 chr3A 89.344 244 25 1 1 244 377789399 377789157 3.520000e-79 305.0
24 TraesCS4B01G272900 chr3A 84.810 158 16 5 246 397 42955437 42955282 4.860000e-33 152.0
25 TraesCS4B01G272900 chr5A 87.705 244 29 1 1 244 342225451 342225209 1.650000e-72 283.0
26 TraesCS4B01G272900 chr5A 85.161 155 15 5 247 395 46228544 46228696 4.860000e-33 152.0
27 TraesCS4B01G272900 chr5A 85.065 154 17 3 247 395 190827533 190827685 4.860000e-33 152.0
28 TraesCS4B01G272900 chr5A 83.951 162 18 5 245 400 11384990 11385149 6.280000e-32 148.0
29 TraesCS4B01G272900 chr5A 84.375 160 16 6 243 395 634785165 634785008 6.280000e-32 148.0
30 TraesCS4B01G272900 chr6A 84.906 159 15 6 243 394 135420207 135420363 4.860000e-33 152.0
31 TraesCS4B01G272900 chr3B 84.810 158 15 6 243 393 349710311 349710156 1.750000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G272900 chr4B 550519802 550522617 2815 False 860.828571 5201 98.664000 1 2816 7 chr4B.!!$F1 2815
1 TraesCS4B01G272900 chr4D 442433479 442437249 3770 False 532.200000 1964 92.556167 398 2791 6 chr4D.!!$F1 2393
2 TraesCS4B01G272900 chr4A 24911194 24912619 1425 True 526.650000 1812 93.790750 394 1910 4 chr4A.!!$R2 1516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 1885 0.0293 GCACGCGCATACATTCCATT 59.971 50.0 5.73 0.0 38.36 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2181 3728 0.034337 TTTTCTTCCTCGGGGTGACG 59.966 55.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.996734 CCATTGGTGGCGGCCTTT 60.997 61.111 21.46 0.00 39.01 3.11
18 19 2.582493 CCATTGGTGGCGGCCTTTT 61.582 57.895 21.46 0.00 39.01 2.27
19 20 1.254284 CCATTGGTGGCGGCCTTTTA 61.254 55.000 21.46 3.75 39.01 1.52
20 21 0.823460 CATTGGTGGCGGCCTTTTAT 59.177 50.000 21.46 6.04 0.00 1.40
21 22 0.823460 ATTGGTGGCGGCCTTTTATG 59.177 50.000 21.46 0.00 0.00 1.90
22 23 1.254284 TTGGTGGCGGCCTTTTATGG 61.254 55.000 21.46 0.00 0.00 2.74
23 24 1.680989 GGTGGCGGCCTTTTATGGT 60.681 57.895 21.46 0.00 0.00 3.55
24 25 1.510844 GTGGCGGCCTTTTATGGTG 59.489 57.895 21.46 0.00 0.00 4.17
25 26 2.347322 TGGCGGCCTTTTATGGTGC 61.347 57.895 21.46 0.00 0.00 5.01
26 27 2.347322 GGCGGCCTTTTATGGTGCA 61.347 57.895 12.87 0.00 34.07 4.57
27 28 1.153842 GCGGCCTTTTATGGTGCAC 60.154 57.895 8.80 8.80 33.14 4.57
28 29 1.510844 CGGCCTTTTATGGTGCACC 59.489 57.895 29.67 29.67 0.00 5.01
39 40 0.950836 TGGTGCACCAACTCATTTCG 59.049 50.000 36.10 0.00 44.35 3.46
40 41 1.234821 GGTGCACCAACTCATTTCGA 58.765 50.000 31.23 0.00 35.64 3.71
41 42 1.606668 GGTGCACCAACTCATTTCGAA 59.393 47.619 31.23 0.00 35.64 3.71
42 43 2.604614 GGTGCACCAACTCATTTCGAAC 60.605 50.000 31.23 0.00 35.64 3.95
43 44 2.032799 GTGCACCAACTCATTTCGAACA 59.967 45.455 5.22 0.00 0.00 3.18
44 45 2.685388 TGCACCAACTCATTTCGAACAA 59.315 40.909 0.00 0.00 0.00 2.83
45 46 3.129462 TGCACCAACTCATTTCGAACAAA 59.871 39.130 0.00 0.00 0.00 2.83
46 47 3.485743 GCACCAACTCATTTCGAACAAAC 59.514 43.478 0.00 0.00 0.00 2.93
47 48 4.041723 CACCAACTCATTTCGAACAAACC 58.958 43.478 0.00 0.00 0.00 3.27
48 49 3.697045 ACCAACTCATTTCGAACAAACCA 59.303 39.130 0.00 0.00 0.00 3.67
49 50 4.158764 ACCAACTCATTTCGAACAAACCAA 59.841 37.500 0.00 0.00 0.00 3.67
50 51 5.105752 CCAACTCATTTCGAACAAACCAAA 58.894 37.500 0.00 0.00 0.00 3.28
51 52 5.752955 CCAACTCATTTCGAACAAACCAAAT 59.247 36.000 0.00 0.00 0.00 2.32
52 53 6.074356 CCAACTCATTTCGAACAAACCAAATC 60.074 38.462 0.00 0.00 0.00 2.17
53 54 5.528870 ACTCATTTCGAACAAACCAAATCC 58.471 37.500 0.00 0.00 0.00 3.01
54 55 5.301805 ACTCATTTCGAACAAACCAAATCCT 59.698 36.000 0.00 0.00 0.00 3.24
55 56 5.768317 TCATTTCGAACAAACCAAATCCTC 58.232 37.500 0.00 0.00 0.00 3.71
56 57 4.577834 TTTCGAACAAACCAAATCCTCC 57.422 40.909 0.00 0.00 0.00 4.30
57 58 3.216187 TCGAACAAACCAAATCCTCCA 57.784 42.857 0.00 0.00 0.00 3.86
58 59 3.556999 TCGAACAAACCAAATCCTCCAA 58.443 40.909 0.00 0.00 0.00 3.53
59 60 3.954904 TCGAACAAACCAAATCCTCCAAA 59.045 39.130 0.00 0.00 0.00 3.28
60 61 4.402793 TCGAACAAACCAAATCCTCCAAAA 59.597 37.500 0.00 0.00 0.00 2.44
61 62 4.506288 CGAACAAACCAAATCCTCCAAAAC 59.494 41.667 0.00 0.00 0.00 2.43
62 63 5.423886 GAACAAACCAAATCCTCCAAAACA 58.576 37.500 0.00 0.00 0.00 2.83
63 64 5.022282 ACAAACCAAATCCTCCAAAACAG 57.978 39.130 0.00 0.00 0.00 3.16
64 65 3.751479 AACCAAATCCTCCAAAACAGC 57.249 42.857 0.00 0.00 0.00 4.40
65 66 2.676748 ACCAAATCCTCCAAAACAGCA 58.323 42.857 0.00 0.00 0.00 4.41
66 67 3.242011 ACCAAATCCTCCAAAACAGCAT 58.758 40.909 0.00 0.00 0.00 3.79
67 68 3.259123 ACCAAATCCTCCAAAACAGCATC 59.741 43.478 0.00 0.00 0.00 3.91
68 69 3.258872 CCAAATCCTCCAAAACAGCATCA 59.741 43.478 0.00 0.00 0.00 3.07
69 70 4.081309 CCAAATCCTCCAAAACAGCATCAT 60.081 41.667 0.00 0.00 0.00 2.45
70 71 4.996788 AATCCTCCAAAACAGCATCATC 57.003 40.909 0.00 0.00 0.00 2.92
71 72 3.438216 TCCTCCAAAACAGCATCATCA 57.562 42.857 0.00 0.00 0.00 3.07
72 73 3.084039 TCCTCCAAAACAGCATCATCAC 58.916 45.455 0.00 0.00 0.00 3.06
73 74 2.821378 CCTCCAAAACAGCATCATCACA 59.179 45.455 0.00 0.00 0.00 3.58
74 75 3.256383 CCTCCAAAACAGCATCATCACAA 59.744 43.478 0.00 0.00 0.00 3.33
75 76 4.482386 CTCCAAAACAGCATCATCACAAG 58.518 43.478 0.00 0.00 0.00 3.16
76 77 4.143543 TCCAAAACAGCATCATCACAAGA 58.856 39.130 0.00 0.00 0.00 3.02
77 78 4.216902 TCCAAAACAGCATCATCACAAGAG 59.783 41.667 0.00 0.00 0.00 2.85
78 79 3.844577 AAACAGCATCATCACAAGAGC 57.155 42.857 0.00 0.00 0.00 4.09
79 80 2.783609 ACAGCATCATCACAAGAGCT 57.216 45.000 0.00 0.00 0.00 4.09
80 81 2.630158 ACAGCATCATCACAAGAGCTC 58.370 47.619 5.27 5.27 0.00 4.09
81 82 2.236644 ACAGCATCATCACAAGAGCTCT 59.763 45.455 11.45 11.45 0.00 4.09
82 83 2.609916 CAGCATCATCACAAGAGCTCTG 59.390 50.000 19.06 13.84 0.00 3.35
83 84 1.331138 GCATCATCACAAGAGCTCTGC 59.669 52.381 19.06 10.08 0.00 4.26
84 85 1.941294 CATCATCACAAGAGCTCTGCC 59.059 52.381 19.06 0.00 0.00 4.85
85 86 0.251354 TCATCACAAGAGCTCTGCCC 59.749 55.000 19.06 0.00 0.00 5.36
86 87 0.252479 CATCACAAGAGCTCTGCCCT 59.748 55.000 19.06 0.00 0.00 5.19
87 88 0.540923 ATCACAAGAGCTCTGCCCTC 59.459 55.000 19.06 0.00 0.00 4.30
88 89 1.078567 CACAAGAGCTCTGCCCTCC 60.079 63.158 19.06 0.00 0.00 4.30
89 90 1.229464 ACAAGAGCTCTGCCCTCCT 60.229 57.895 19.06 0.00 0.00 3.69
90 91 1.264045 ACAAGAGCTCTGCCCTCCTC 61.264 60.000 19.06 0.00 0.00 3.71
91 92 1.688884 AAGAGCTCTGCCCTCCTCC 60.689 63.158 19.06 0.00 0.00 4.30
92 93 2.042025 GAGCTCTGCCCTCCTCCT 60.042 66.667 6.43 0.00 0.00 3.69
93 94 1.688884 GAGCTCTGCCCTCCTCCTT 60.689 63.158 6.43 0.00 0.00 3.36
94 95 1.229788 AGCTCTGCCCTCCTCCTTT 60.230 57.895 0.00 0.00 0.00 3.11
95 96 1.077858 GCTCTGCCCTCCTCCTTTG 60.078 63.158 0.00 0.00 0.00 2.77
96 97 1.846712 GCTCTGCCCTCCTCCTTTGT 61.847 60.000 0.00 0.00 0.00 2.83
97 98 0.695347 CTCTGCCCTCCTCCTTTGTT 59.305 55.000 0.00 0.00 0.00 2.83
98 99 1.074566 CTCTGCCCTCCTCCTTTGTTT 59.925 52.381 0.00 0.00 0.00 2.83
99 100 1.073923 TCTGCCCTCCTCCTTTGTTTC 59.926 52.381 0.00 0.00 0.00 2.78
100 101 0.850100 TGCCCTCCTCCTTTGTTTCA 59.150 50.000 0.00 0.00 0.00 2.69
101 102 1.202927 TGCCCTCCTCCTTTGTTTCAG 60.203 52.381 0.00 0.00 0.00 3.02
102 103 1.539157 CCCTCCTCCTTTGTTTCAGC 58.461 55.000 0.00 0.00 0.00 4.26
103 104 1.074566 CCCTCCTCCTTTGTTTCAGCT 59.925 52.381 0.00 0.00 0.00 4.24
104 105 2.305927 CCCTCCTCCTTTGTTTCAGCTA 59.694 50.000 0.00 0.00 0.00 3.32
105 106 3.604582 CCTCCTCCTTTGTTTCAGCTAG 58.395 50.000 0.00 0.00 0.00 3.42
106 107 3.261897 CCTCCTCCTTTGTTTCAGCTAGA 59.738 47.826 0.00 0.00 0.00 2.43
107 108 4.263068 CCTCCTCCTTTGTTTCAGCTAGAA 60.263 45.833 0.00 0.00 0.00 2.10
108 109 4.899502 TCCTCCTTTGTTTCAGCTAGAAG 58.100 43.478 0.00 0.00 37.57 2.85
109 110 4.593206 TCCTCCTTTGTTTCAGCTAGAAGA 59.407 41.667 0.00 0.00 37.57 2.87
110 111 5.249393 TCCTCCTTTGTTTCAGCTAGAAGAT 59.751 40.000 0.00 0.00 37.57 2.40
111 112 5.353678 CCTCCTTTGTTTCAGCTAGAAGATG 59.646 44.000 0.00 0.00 37.57 2.90
112 113 5.248640 TCCTTTGTTTCAGCTAGAAGATGG 58.751 41.667 0.00 0.00 37.57 3.51
113 114 5.013079 TCCTTTGTTTCAGCTAGAAGATGGA 59.987 40.000 0.00 0.00 37.57 3.41
114 115 5.884792 CCTTTGTTTCAGCTAGAAGATGGAT 59.115 40.000 0.00 0.00 37.57 3.41
115 116 6.183360 CCTTTGTTTCAGCTAGAAGATGGATG 60.183 42.308 0.00 0.00 37.57 3.51
116 117 5.682234 TGTTTCAGCTAGAAGATGGATGA 57.318 39.130 0.00 0.00 37.57 2.92
117 118 6.053632 TGTTTCAGCTAGAAGATGGATGAA 57.946 37.500 0.00 0.00 42.23 2.57
118 119 5.877012 TGTTTCAGCTAGAAGATGGATGAAC 59.123 40.000 0.00 0.00 43.41 3.18
119 120 4.679373 TCAGCTAGAAGATGGATGAACC 57.321 45.455 0.00 0.00 31.19 3.62
120 121 5.045651 TTTCAGCTAGAAGATGGATGAACCA 60.046 40.000 0.00 0.00 43.41 3.67
121 122 6.522286 TTTCAGCTAGAAGATGGATGAACCAA 60.522 38.462 0.00 0.00 43.41 3.67
122 123 7.802037 TTTCAGCTAGAAGATGGATGAACCAAT 60.802 37.037 0.00 0.00 43.41 3.16
128 129 3.594453 TGGATGAACCAATCAGGCC 57.406 52.632 0.00 0.00 46.75 5.19
129 130 0.033208 TGGATGAACCAATCAGGCCC 60.033 55.000 0.00 0.00 46.75 5.80
130 131 0.756815 GGATGAACCAATCAGGCCCC 60.757 60.000 0.00 0.00 42.53 5.80
131 132 0.033208 GATGAACCAATCAGGCCCCA 60.033 55.000 0.00 0.00 42.53 4.96
132 133 0.324645 ATGAACCAATCAGGCCCCAC 60.325 55.000 0.00 0.00 42.53 4.61
133 134 1.076549 GAACCAATCAGGCCCCACA 59.923 57.895 0.00 0.00 43.14 4.17
134 135 0.324645 GAACCAATCAGGCCCCACAT 60.325 55.000 0.00 0.00 43.14 3.21
135 136 0.615544 AACCAATCAGGCCCCACATG 60.616 55.000 0.00 0.00 43.14 3.21
136 137 1.000739 CCAATCAGGCCCCACATGT 59.999 57.895 0.00 0.00 0.00 3.21
137 138 0.615544 CCAATCAGGCCCCACATGTT 60.616 55.000 0.00 0.00 0.00 2.71
138 139 1.269012 CAATCAGGCCCCACATGTTT 58.731 50.000 0.00 0.00 0.00 2.83
139 140 1.624813 CAATCAGGCCCCACATGTTTT 59.375 47.619 0.00 0.00 0.00 2.43
140 141 2.830923 CAATCAGGCCCCACATGTTTTA 59.169 45.455 0.00 0.00 0.00 1.52
141 142 2.214376 TCAGGCCCCACATGTTTTAG 57.786 50.000 0.00 0.00 0.00 1.85
142 143 0.532115 CAGGCCCCACATGTTTTAGC 59.468 55.000 0.00 0.00 0.00 3.09
143 144 0.965363 AGGCCCCACATGTTTTAGCG 60.965 55.000 0.00 0.00 0.00 4.26
144 145 1.248101 GGCCCCACATGTTTTAGCGT 61.248 55.000 0.00 0.00 0.00 5.07
145 146 0.109319 GCCCCACATGTTTTAGCGTG 60.109 55.000 0.00 0.00 0.00 5.34
146 147 0.525761 CCCCACATGTTTTAGCGTGG 59.474 55.000 0.00 0.00 46.93 4.94
147 148 1.243902 CCCACATGTTTTAGCGTGGT 58.756 50.000 0.00 0.00 46.13 4.16
148 149 1.199097 CCCACATGTTTTAGCGTGGTC 59.801 52.381 0.00 0.00 46.13 4.02
149 150 1.199097 CCACATGTTTTAGCGTGGTCC 59.801 52.381 0.00 0.00 43.23 4.46
150 151 2.151202 CACATGTTTTAGCGTGGTCCT 58.849 47.619 0.00 0.00 0.00 3.85
151 152 2.095768 CACATGTTTTAGCGTGGTCCTG 60.096 50.000 0.00 0.00 0.00 3.86
152 153 1.468520 CATGTTTTAGCGTGGTCCTGG 59.531 52.381 0.00 0.00 0.00 4.45
153 154 0.250553 TGTTTTAGCGTGGTCCTGGG 60.251 55.000 0.00 0.00 0.00 4.45
154 155 0.958876 GTTTTAGCGTGGTCCTGGGG 60.959 60.000 0.00 0.00 0.00 4.96
155 156 2.132089 TTTTAGCGTGGTCCTGGGGG 62.132 60.000 0.00 0.00 0.00 5.40
176 177 4.268720 GGTTCCACACCTTTGCCA 57.731 55.556 0.00 0.00 43.29 4.92
177 178 2.745379 GGTTCCACACCTTTGCCAT 58.255 52.632 0.00 0.00 43.29 4.40
178 179 0.603065 GGTTCCACACCTTTGCCATC 59.397 55.000 0.00 0.00 43.29 3.51
179 180 1.327303 GTTCCACACCTTTGCCATCA 58.673 50.000 0.00 0.00 0.00 3.07
180 181 1.686052 GTTCCACACCTTTGCCATCAA 59.314 47.619 0.00 0.00 0.00 2.57
181 182 2.299867 GTTCCACACCTTTGCCATCAAT 59.700 45.455 0.00 0.00 31.33 2.57
182 183 2.607499 TCCACACCTTTGCCATCAATT 58.393 42.857 0.00 0.00 31.33 2.32
183 184 2.971330 TCCACACCTTTGCCATCAATTT 59.029 40.909 0.00 0.00 31.33 1.82
184 185 3.006752 TCCACACCTTTGCCATCAATTTC 59.993 43.478 0.00 0.00 31.33 2.17
185 186 3.328505 CACACCTTTGCCATCAATTTCC 58.671 45.455 0.00 0.00 31.33 3.13
186 187 2.971330 ACACCTTTGCCATCAATTTCCA 59.029 40.909 0.00 0.00 31.33 3.53
187 188 3.583966 ACACCTTTGCCATCAATTTCCAT 59.416 39.130 0.00 0.00 31.33 3.41
188 189 4.776837 ACACCTTTGCCATCAATTTCCATA 59.223 37.500 0.00 0.00 31.33 2.74
189 190 5.105228 ACACCTTTGCCATCAATTTCCATAG 60.105 40.000 0.00 0.00 31.33 2.23
190 191 4.406649 ACCTTTGCCATCAATTTCCATAGG 59.593 41.667 0.00 0.00 31.33 2.57
191 192 4.650588 CCTTTGCCATCAATTTCCATAGGA 59.349 41.667 0.00 0.00 31.33 2.94
192 193 5.306160 CCTTTGCCATCAATTTCCATAGGAT 59.694 40.000 0.00 0.00 31.33 3.24
193 194 6.409524 TTTGCCATCAATTTCCATAGGATC 57.590 37.500 0.00 0.00 31.33 3.36
194 195 5.064314 TGCCATCAATTTCCATAGGATCA 57.936 39.130 0.00 0.00 0.00 2.92
195 196 4.828939 TGCCATCAATTTCCATAGGATCAC 59.171 41.667 0.00 0.00 0.00 3.06
196 197 5.075493 GCCATCAATTTCCATAGGATCACT 58.925 41.667 0.00 0.00 0.00 3.41
197 198 5.048224 GCCATCAATTTCCATAGGATCACTG 60.048 44.000 0.00 0.00 0.00 3.66
198 199 5.048224 CCATCAATTTCCATAGGATCACTGC 60.048 44.000 0.00 0.00 0.00 4.40
199 200 5.114764 TCAATTTCCATAGGATCACTGCA 57.885 39.130 0.00 0.00 0.00 4.41
200 201 5.698104 TCAATTTCCATAGGATCACTGCAT 58.302 37.500 0.00 0.00 0.00 3.96
201 202 5.533528 TCAATTTCCATAGGATCACTGCATG 59.466 40.000 0.00 0.00 0.00 4.06
202 203 4.776435 TTTCCATAGGATCACTGCATGA 57.224 40.909 0.00 0.00 43.13 3.07
223 224 2.777969 GCAGGAGCAGAAGACATGG 58.222 57.895 0.00 0.00 41.58 3.66
224 225 0.251354 GCAGGAGCAGAAGACATGGA 59.749 55.000 0.00 0.00 41.58 3.41
225 226 1.339438 GCAGGAGCAGAAGACATGGAA 60.339 52.381 0.00 0.00 41.58 3.53
226 227 2.354259 CAGGAGCAGAAGACATGGAAC 58.646 52.381 0.00 0.00 0.00 3.62
227 228 1.066573 AGGAGCAGAAGACATGGAACG 60.067 52.381 0.00 0.00 0.00 3.95
228 229 1.066858 GGAGCAGAAGACATGGAACGA 60.067 52.381 0.00 0.00 0.00 3.85
229 230 2.612972 GGAGCAGAAGACATGGAACGAA 60.613 50.000 0.00 0.00 0.00 3.85
230 231 3.265791 GAGCAGAAGACATGGAACGAAT 58.734 45.455 0.00 0.00 0.00 3.34
231 232 3.265791 AGCAGAAGACATGGAACGAATC 58.734 45.455 0.00 0.00 0.00 2.52
243 244 4.664150 GGAACGAATCCTCATCTTCTCT 57.336 45.455 5.00 0.00 45.56 3.10
244 245 5.776173 GGAACGAATCCTCATCTTCTCTA 57.224 43.478 5.00 0.00 45.56 2.43
245 246 5.525199 GGAACGAATCCTCATCTTCTCTAC 58.475 45.833 5.00 0.00 45.56 2.59
246 247 4.822036 ACGAATCCTCATCTTCTCTACG 57.178 45.455 0.00 0.00 0.00 3.51
247 248 4.452825 ACGAATCCTCATCTTCTCTACGA 58.547 43.478 0.00 0.00 0.00 3.43
248 249 4.513692 ACGAATCCTCATCTTCTCTACGAG 59.486 45.833 0.00 0.00 0.00 4.18
249 250 4.612712 CGAATCCTCATCTTCTCTACGAGC 60.613 50.000 0.00 0.00 0.00 5.03
250 251 3.283259 TCCTCATCTTCTCTACGAGCA 57.717 47.619 0.00 0.00 0.00 4.26
251 252 3.210227 TCCTCATCTTCTCTACGAGCAG 58.790 50.000 0.00 0.00 0.00 4.24
252 253 2.293122 CCTCATCTTCTCTACGAGCAGG 59.707 54.545 0.00 0.00 0.00 4.85
253 254 2.293122 CTCATCTTCTCTACGAGCAGGG 59.707 54.545 0.00 0.00 0.00 4.45
254 255 1.339610 CATCTTCTCTACGAGCAGGGG 59.660 57.143 0.00 0.00 0.00 4.79
255 256 0.624254 TCTTCTCTACGAGCAGGGGA 59.376 55.000 0.00 0.00 0.00 4.81
256 257 0.741915 CTTCTCTACGAGCAGGGGAC 59.258 60.000 0.00 0.00 0.00 4.46
257 258 0.331954 TTCTCTACGAGCAGGGGACT 59.668 55.000 0.00 0.00 46.44 3.85
258 259 1.210538 TCTCTACGAGCAGGGGACTA 58.789 55.000 0.00 0.00 40.21 2.59
259 260 1.562942 TCTCTACGAGCAGGGGACTAA 59.437 52.381 0.00 0.00 40.21 2.24
260 261 2.175069 TCTCTACGAGCAGGGGACTAAT 59.825 50.000 0.00 0.00 40.21 1.73
261 262 3.393609 TCTCTACGAGCAGGGGACTAATA 59.606 47.826 0.00 0.00 40.21 0.98
262 263 3.752665 TCTACGAGCAGGGGACTAATAG 58.247 50.000 0.00 0.00 40.21 1.73
263 264 1.705873 ACGAGCAGGGGACTAATAGG 58.294 55.000 0.00 0.00 40.21 2.57
264 265 0.318762 CGAGCAGGGGACTAATAGGC 59.681 60.000 0.00 0.00 40.21 3.93
265 266 0.318762 GAGCAGGGGACTAATAGGCG 59.681 60.000 0.00 0.00 40.21 5.52
266 267 0.105658 AGCAGGGGACTAATAGGCGA 60.106 55.000 0.00 0.00 40.21 5.54
267 268 0.756903 GCAGGGGACTAATAGGCGAA 59.243 55.000 0.00 0.00 40.21 4.70
268 269 1.348036 GCAGGGGACTAATAGGCGAAT 59.652 52.381 0.00 0.00 40.21 3.34
269 270 2.613223 GCAGGGGACTAATAGGCGAATC 60.613 54.545 0.00 0.00 40.21 2.52
270 271 1.893801 AGGGGACTAATAGGCGAATCG 59.106 52.381 0.00 0.00 40.61 3.34
271 272 1.067071 GGGGACTAATAGGCGAATCGG 60.067 57.143 4.35 0.00 0.00 4.18
282 283 2.005188 GCGAATCGGCAAGTTAATCG 57.995 50.000 4.35 0.00 0.00 3.34
283 284 1.332904 GCGAATCGGCAAGTTAATCGG 60.333 52.381 4.35 0.00 0.00 4.18
284 285 1.931172 CGAATCGGCAAGTTAATCGGT 59.069 47.619 0.00 0.00 0.00 4.69
285 286 2.034001 CGAATCGGCAAGTTAATCGGTC 60.034 50.000 0.00 0.00 0.00 4.79
286 287 2.684001 ATCGGCAAGTTAATCGGTCA 57.316 45.000 0.00 0.00 0.00 4.02
287 288 2.684001 TCGGCAAGTTAATCGGTCAT 57.316 45.000 0.00 0.00 0.00 3.06
288 289 3.804786 TCGGCAAGTTAATCGGTCATA 57.195 42.857 0.00 0.00 0.00 2.15
289 290 4.126208 TCGGCAAGTTAATCGGTCATAA 57.874 40.909 0.00 0.00 0.00 1.90
290 291 4.699637 TCGGCAAGTTAATCGGTCATAAT 58.300 39.130 0.00 0.00 0.00 1.28
291 292 4.748102 TCGGCAAGTTAATCGGTCATAATC 59.252 41.667 0.00 0.00 0.00 1.75
292 293 4.509970 CGGCAAGTTAATCGGTCATAATCA 59.490 41.667 0.00 0.00 0.00 2.57
293 294 5.007234 CGGCAAGTTAATCGGTCATAATCAA 59.993 40.000 0.00 0.00 0.00 2.57
294 295 6.430451 GGCAAGTTAATCGGTCATAATCAAG 58.570 40.000 0.00 0.00 0.00 3.02
295 296 6.038271 GGCAAGTTAATCGGTCATAATCAAGT 59.962 38.462 0.00 0.00 0.00 3.16
296 297 7.415206 GGCAAGTTAATCGGTCATAATCAAGTT 60.415 37.037 0.00 0.00 0.00 2.66
297 298 8.609176 GCAAGTTAATCGGTCATAATCAAGTTA 58.391 33.333 0.00 0.00 0.00 2.24
299 300 9.886132 AAGTTAATCGGTCATAATCAAGTTAGT 57.114 29.630 0.00 0.00 0.00 2.24
300 301 9.530633 AGTTAATCGGTCATAATCAAGTTAGTC 57.469 33.333 0.00 0.00 0.00 2.59
301 302 9.309516 GTTAATCGGTCATAATCAAGTTAGTCA 57.690 33.333 0.00 0.00 0.00 3.41
302 303 9.529325 TTAATCGGTCATAATCAAGTTAGTCAG 57.471 33.333 0.00 0.00 0.00 3.51
303 304 6.525578 TCGGTCATAATCAAGTTAGTCAGT 57.474 37.500 0.00 0.00 0.00 3.41
304 305 6.561614 TCGGTCATAATCAAGTTAGTCAGTC 58.438 40.000 0.00 0.00 0.00 3.51
305 306 6.152154 TCGGTCATAATCAAGTTAGTCAGTCA 59.848 38.462 0.00 0.00 0.00 3.41
306 307 6.980978 CGGTCATAATCAAGTTAGTCAGTCAT 59.019 38.462 0.00 0.00 0.00 3.06
307 308 7.492669 CGGTCATAATCAAGTTAGTCAGTCATT 59.507 37.037 0.00 0.00 0.00 2.57
308 309 9.167311 GGTCATAATCAAGTTAGTCAGTCATTT 57.833 33.333 0.00 0.00 0.00 2.32
336 337 8.441312 TCAATTAATTGGTTACTCGGTAATCC 57.559 34.615 24.40 6.56 38.30 3.01
337 338 8.269317 TCAATTAATTGGTTACTCGGTAATCCT 58.731 33.333 24.40 0.00 38.30 3.24
338 339 9.550406 CAATTAATTGGTTACTCGGTAATCCTA 57.450 33.333 18.72 4.49 34.22 2.94
340 341 9.720769 ATTAATTGGTTACTCGGTAATCCTATG 57.279 33.333 5.09 0.00 28.92 2.23
341 342 6.989155 ATTGGTTACTCGGTAATCCTATGA 57.011 37.500 5.09 0.00 28.92 2.15
342 343 6.401047 TTGGTTACTCGGTAATCCTATGAG 57.599 41.667 5.09 0.00 28.92 2.90
343 344 5.452255 TGGTTACTCGGTAATCCTATGAGT 58.548 41.667 5.09 0.00 42.22 3.41
344 345 6.604171 TGGTTACTCGGTAATCCTATGAGTA 58.396 40.000 5.09 0.00 40.22 2.59
345 346 6.713903 TGGTTACTCGGTAATCCTATGAGTAG 59.286 42.308 5.09 0.00 41.59 2.57
347 348 4.664392 ACTCGGTAATCCTATGAGTAGGG 58.336 47.826 1.92 0.00 46.37 3.53
348 349 4.353191 ACTCGGTAATCCTATGAGTAGGGA 59.647 45.833 1.92 0.00 46.37 4.20
349 350 5.015391 ACTCGGTAATCCTATGAGTAGGGAT 59.985 44.000 1.92 0.00 46.37 3.85
350 351 5.900437 TCGGTAATCCTATGAGTAGGGATT 58.100 41.667 10.61 10.61 46.37 3.01
351 352 7.036154 TCGGTAATCCTATGAGTAGGGATTA 57.964 40.000 8.91 8.91 46.37 1.75
352 353 7.472741 TCGGTAATCCTATGAGTAGGGATTAA 58.527 38.462 13.13 0.00 46.37 1.40
353 354 8.120538 TCGGTAATCCTATGAGTAGGGATTAAT 58.879 37.037 13.13 0.00 46.37 1.40
354 355 8.414778 CGGTAATCCTATGAGTAGGGATTAATC 58.585 40.741 6.93 6.93 46.37 1.75
355 356 8.414778 GGTAATCCTATGAGTAGGGATTAATCG 58.585 40.741 13.13 0.00 46.37 3.34
356 357 7.425224 AATCCTATGAGTAGGGATTAATCGG 57.575 40.000 9.32 1.49 46.37 4.18
357 358 4.710375 TCCTATGAGTAGGGATTAATCGGC 59.290 45.833 9.32 0.00 46.37 5.54
358 359 4.466370 CCTATGAGTAGGGATTAATCGGCA 59.534 45.833 9.32 2.09 43.26 5.69
359 360 4.974645 ATGAGTAGGGATTAATCGGCAA 57.025 40.909 9.32 0.00 0.00 4.52
360 361 4.336889 TGAGTAGGGATTAATCGGCAAG 57.663 45.455 9.32 0.00 0.00 4.01
361 362 3.709653 TGAGTAGGGATTAATCGGCAAGT 59.290 43.478 9.32 0.00 0.00 3.16
362 363 4.163458 TGAGTAGGGATTAATCGGCAAGTT 59.837 41.667 9.32 0.00 0.00 2.66
363 364 5.364446 TGAGTAGGGATTAATCGGCAAGTTA 59.636 40.000 9.32 0.00 0.00 2.24
364 365 6.126997 TGAGTAGGGATTAATCGGCAAGTTAA 60.127 38.462 9.32 0.00 0.00 2.01
365 366 6.053650 AGTAGGGATTAATCGGCAAGTTAAC 58.946 40.000 9.32 0.00 0.00 2.01
366 367 5.112129 AGGGATTAATCGGCAAGTTAACT 57.888 39.130 9.32 1.12 0.00 2.24
367 368 6.243216 AGGGATTAATCGGCAAGTTAACTA 57.757 37.500 8.92 0.00 0.00 2.24
368 369 6.289064 AGGGATTAATCGGCAAGTTAACTAG 58.711 40.000 8.92 1.51 0.00 2.57
369 370 6.053650 GGGATTAATCGGCAAGTTAACTAGT 58.946 40.000 8.92 0.00 0.00 2.57
370 371 6.541278 GGGATTAATCGGCAAGTTAACTAGTT 59.459 38.462 13.68 13.68 0.00 2.24
371 372 7.254692 GGGATTAATCGGCAAGTTAACTAGTTC 60.255 40.741 12.39 0.00 0.00 3.01
372 373 7.279313 GGATTAATCGGCAAGTTAACTAGTTCA 59.721 37.037 12.39 0.00 0.00 3.18
373 374 7.591006 TTAATCGGCAAGTTAACTAGTTCAG 57.409 36.000 12.39 0.00 0.00 3.02
374 375 4.859304 TCGGCAAGTTAACTAGTTCAGA 57.141 40.909 12.39 0.00 0.00 3.27
375 376 4.553323 TCGGCAAGTTAACTAGTTCAGAC 58.447 43.478 12.39 9.67 0.00 3.51
376 377 3.364023 CGGCAAGTTAACTAGTTCAGACG 59.636 47.826 12.39 8.76 0.00 4.18
377 378 4.553323 GGCAAGTTAACTAGTTCAGACGA 58.447 43.478 12.39 0.00 0.00 4.20
378 379 4.986659 GGCAAGTTAACTAGTTCAGACGAA 59.013 41.667 12.39 0.00 0.00 3.85
379 380 5.638234 GGCAAGTTAACTAGTTCAGACGAAT 59.362 40.000 12.39 0.33 32.61 3.34
380 381 6.147328 GGCAAGTTAACTAGTTCAGACGAATT 59.853 38.462 12.39 0.00 32.61 2.17
381 382 7.228150 GCAAGTTAACTAGTTCAGACGAATTC 58.772 38.462 12.39 0.00 32.61 2.17
382 383 7.116519 GCAAGTTAACTAGTTCAGACGAATTCT 59.883 37.037 12.39 0.00 32.61 2.40
383 384 8.979574 CAAGTTAACTAGTTCAGACGAATTCTT 58.020 33.333 12.39 0.00 32.61 2.52
384 385 8.522178 AGTTAACTAGTTCAGACGAATTCTTG 57.478 34.615 12.39 0.00 32.61 3.02
385 386 8.358148 AGTTAACTAGTTCAGACGAATTCTTGA 58.642 33.333 12.39 2.31 32.61 3.02
386 387 8.975439 GTTAACTAGTTCAGACGAATTCTTGAA 58.025 33.333 12.39 8.09 32.61 2.69
387 388 7.409465 AACTAGTTCAGACGAATTCTTGAAC 57.591 36.000 24.70 24.70 39.83 3.18
388 389 6.513180 ACTAGTTCAGACGAATTCTTGAACA 58.487 36.000 29.00 20.59 40.83 3.18
389 390 5.914085 AGTTCAGACGAATTCTTGAACAG 57.086 39.130 29.00 9.98 40.83 3.16
390 391 4.752101 AGTTCAGACGAATTCTTGAACAGG 59.248 41.667 29.00 9.44 40.83 4.00
391 392 3.664107 TCAGACGAATTCTTGAACAGGG 58.336 45.455 3.52 0.00 28.96 4.45
392 393 3.323691 TCAGACGAATTCTTGAACAGGGA 59.676 43.478 3.52 0.00 28.96 4.20
451 453 4.612412 ACGAGCAAACGGGGCGAA 62.612 61.111 0.00 0.00 37.61 4.70
466 468 1.448985 GCGAAATAACTGTGAGGGCA 58.551 50.000 0.00 0.00 0.00 5.36
476 478 1.005215 CTGTGAGGGCAAGGAATCCTT 59.995 52.381 9.08 9.08 45.88 3.36
487 489 4.576330 AAGGAATCCTTGACGAAATCCT 57.424 40.909 14.68 0.00 42.96 3.24
497 499 4.764050 TGACGAAATCCTTAATAGGCCA 57.236 40.909 5.01 0.00 41.69 5.36
532 565 2.040278 CACCTCTCCCTCCAGGCT 59.960 66.667 0.00 0.00 32.32 4.58
539 581 3.095163 CCCTCCAGGCTCCAGCAT 61.095 66.667 0.03 0.00 44.36 3.79
634 1882 3.097672 TGCACGCGCATACATTCC 58.902 55.556 5.73 0.00 45.36 3.01
635 1883 1.743252 TGCACGCGCATACATTCCA 60.743 52.632 5.73 0.00 45.36 3.53
636 1884 1.094650 TGCACGCGCATACATTCCAT 61.095 50.000 5.73 0.00 45.36 3.41
637 1885 0.029300 GCACGCGCATACATTCCATT 59.971 50.000 5.73 0.00 38.36 3.16
638 1886 1.921573 GCACGCGCATACATTCCATTC 60.922 52.381 5.73 0.00 38.36 2.67
639 1887 0.944386 ACGCGCATACATTCCATTCC 59.056 50.000 5.73 0.00 0.00 3.01
640 1888 0.943673 CGCGCATACATTCCATTCCA 59.056 50.000 8.75 0.00 0.00 3.53
641 1889 1.536766 CGCGCATACATTCCATTCCAT 59.463 47.619 8.75 0.00 0.00 3.41
642 1890 2.413239 CGCGCATACATTCCATTCCATC 60.413 50.000 8.75 0.00 0.00 3.51
643 1891 2.816087 GCGCATACATTCCATTCCATCT 59.184 45.455 0.30 0.00 0.00 2.90
644 1892 4.002982 GCGCATACATTCCATTCCATCTA 58.997 43.478 0.30 0.00 0.00 1.98
645 1893 4.093998 GCGCATACATTCCATTCCATCTAG 59.906 45.833 0.30 0.00 0.00 2.43
646 1894 5.482006 CGCATACATTCCATTCCATCTAGA 58.518 41.667 0.00 0.00 0.00 2.43
647 1895 6.111382 CGCATACATTCCATTCCATCTAGAT 58.889 40.000 0.00 0.00 0.00 1.98
648 1896 6.036844 CGCATACATTCCATTCCATCTAGATG 59.963 42.308 23.53 23.53 38.51 2.90
649 1897 6.183360 GCATACATTCCATTCCATCTAGATGC 60.183 42.308 24.81 7.54 37.49 3.91
650 1898 5.579753 ACATTCCATTCCATCTAGATGCT 57.420 39.130 24.81 10.36 37.49 3.79
651 1899 5.558818 ACATTCCATTCCATCTAGATGCTC 58.441 41.667 24.81 0.00 37.49 4.26
652 1900 4.630644 TTCCATTCCATCTAGATGCTCC 57.369 45.455 24.81 0.00 37.49 4.70
653 1901 3.590714 TCCATTCCATCTAGATGCTCCA 58.409 45.455 24.81 9.86 37.49 3.86
654 1902 4.173594 TCCATTCCATCTAGATGCTCCAT 58.826 43.478 24.81 11.51 37.49 3.41
655 1903 4.019591 TCCATTCCATCTAGATGCTCCATG 60.020 45.833 24.81 20.03 37.49 3.66
656 1904 3.413846 TTCCATCTAGATGCTCCATGC 57.586 47.619 24.81 0.00 43.25 4.06
671 1919 3.097672 TGCACGCGCATACATTCC 58.902 55.556 5.73 0.00 45.36 3.01
672 1920 1.743252 TGCACGCGCATACATTCCA 60.743 52.632 5.73 0.00 45.36 3.53
673 1921 1.094650 TGCACGCGCATACATTCCAT 61.095 50.000 5.73 0.00 45.36 3.41
674 1922 0.029300 GCACGCGCATACATTCCATT 59.971 50.000 5.73 0.00 38.36 3.16
675 1923 1.921573 GCACGCGCATACATTCCATTC 60.922 52.381 5.73 0.00 38.36 2.67
676 1924 0.944386 ACGCGCATACATTCCATTCC 59.056 50.000 5.73 0.00 0.00 3.01
677 1925 0.943673 CGCGCATACATTCCATTCCA 59.056 50.000 8.75 0.00 0.00 3.53
678 1926 1.536766 CGCGCATACATTCCATTCCAT 59.463 47.619 8.75 0.00 0.00 3.41
679 1927 2.413239 CGCGCATACATTCCATTCCATC 60.413 50.000 8.75 0.00 0.00 3.51
680 1928 2.816087 GCGCATACATTCCATTCCATCT 59.184 45.455 0.30 0.00 0.00 2.90
681 1929 4.002982 GCGCATACATTCCATTCCATCTA 58.997 43.478 0.30 0.00 0.00 1.98
682 1930 4.093998 GCGCATACATTCCATTCCATCTAG 59.906 45.833 0.30 0.00 0.00 2.43
683 1931 5.482006 CGCATACATTCCATTCCATCTAGA 58.518 41.667 0.00 0.00 0.00 2.43
684 1932 6.111382 CGCATACATTCCATTCCATCTAGAT 58.889 40.000 0.00 0.00 0.00 1.98
685 1933 6.036844 CGCATACATTCCATTCCATCTAGATG 59.963 42.308 23.53 23.53 38.51 2.90
686 1934 6.183360 GCATACATTCCATTCCATCTAGATGC 60.183 42.308 24.81 7.54 37.49 3.91
687 1935 5.579753 ACATTCCATTCCATCTAGATGCT 57.420 39.130 24.81 10.36 37.49 3.79
688 1936 5.558818 ACATTCCATTCCATCTAGATGCTC 58.441 41.667 24.81 0.00 37.49 4.26
689 1937 4.630644 TTCCATTCCATCTAGATGCTCC 57.369 45.455 24.81 0.00 37.49 4.70
690 1938 3.590714 TCCATTCCATCTAGATGCTCCA 58.409 45.455 24.81 9.86 37.49 3.86
691 1939 4.173594 TCCATTCCATCTAGATGCTCCAT 58.826 43.478 24.81 11.51 37.49 3.41
692 1940 4.019591 TCCATTCCATCTAGATGCTCCATG 60.020 45.833 24.81 20.03 37.49 3.66
693 1941 3.413846 TTCCATCTAGATGCTCCATGC 57.586 47.619 24.81 0.00 43.25 4.06
708 1956 3.097672 TGCACGCGCATACATTCC 58.902 55.556 5.73 0.00 45.36 3.01
709 1957 1.743252 TGCACGCGCATACATTCCA 60.743 52.632 5.73 0.00 45.36 3.53
710 1958 1.094650 TGCACGCGCATACATTCCAT 61.095 50.000 5.73 0.00 45.36 3.41
711 1959 0.029300 GCACGCGCATACATTCCATT 59.971 50.000 5.73 0.00 38.36 3.16
712 1960 1.921573 GCACGCGCATACATTCCATTC 60.922 52.381 5.73 0.00 38.36 2.67
713 1961 0.944386 ACGCGCATACATTCCATTCC 59.056 50.000 5.73 0.00 0.00 3.01
714 1962 0.943673 CGCGCATACATTCCATTCCA 59.056 50.000 8.75 0.00 0.00 3.53
715 1963 1.536766 CGCGCATACATTCCATTCCAT 59.463 47.619 8.75 0.00 0.00 3.41
716 1964 2.413239 CGCGCATACATTCCATTCCATC 60.413 50.000 8.75 0.00 0.00 3.51
717 1965 2.816087 GCGCATACATTCCATTCCATCT 59.184 45.455 0.30 0.00 0.00 2.90
718 1966 4.002982 GCGCATACATTCCATTCCATCTA 58.997 43.478 0.30 0.00 0.00 1.98
719 1967 4.093998 GCGCATACATTCCATTCCATCTAG 59.906 45.833 0.30 0.00 0.00 2.43
720 1968 5.482006 CGCATACATTCCATTCCATCTAGA 58.518 41.667 0.00 0.00 0.00 2.43
721 1969 6.111382 CGCATACATTCCATTCCATCTAGAT 58.889 40.000 0.00 0.00 0.00 1.98
722 1970 6.036844 CGCATACATTCCATTCCATCTAGATG 59.963 42.308 23.53 23.53 38.51 2.90
723 1971 6.183360 GCATACATTCCATTCCATCTAGATGC 60.183 42.308 24.81 7.54 37.49 3.91
724 1972 5.579753 ACATTCCATTCCATCTAGATGCT 57.420 39.130 24.81 10.36 37.49 3.79
725 1973 5.558818 ACATTCCATTCCATCTAGATGCTC 58.441 41.667 24.81 0.00 37.49 4.26
726 1974 4.630644 TTCCATTCCATCTAGATGCTCC 57.369 45.455 24.81 0.00 37.49 4.70
727 1975 3.590714 TCCATTCCATCTAGATGCTCCA 58.409 45.455 24.81 9.86 37.49 3.86
728 1976 4.173594 TCCATTCCATCTAGATGCTCCAT 58.826 43.478 24.81 11.51 37.49 3.41
729 1977 4.019591 TCCATTCCATCTAGATGCTCCATG 60.020 45.833 24.81 20.03 37.49 3.66
730 1978 3.413846 TTCCATCTAGATGCTCCATGC 57.586 47.619 24.81 0.00 43.25 4.06
965 2223 2.540383 AGCCCCATATAGCGAGATCAA 58.460 47.619 0.00 0.00 0.00 2.57
1215 2486 3.795041 CTGCCCTGGCTCCTCCTG 61.795 72.222 9.97 0.00 42.51 3.86
1273 2544 4.069232 CCTGCCTCGCCGTCTTCA 62.069 66.667 0.00 0.00 0.00 3.02
1281 2552 0.242825 TCGCCGTCTTCATCTTCGTT 59.757 50.000 0.00 0.00 0.00 3.85
1301 2572 4.619227 CACCACCGGCTCCAACGT 62.619 66.667 0.00 0.00 0.00 3.99
1341 2612 1.461559 CCTTCCTCGAGTACGACCTT 58.538 55.000 12.31 0.00 43.81 3.50
1406 2677 1.395826 GGGAGGTGGGACGAGATCAG 61.396 65.000 0.00 0.00 0.00 2.90
1512 2783 4.457496 CCGATGCAGTCCGGCTGT 62.457 66.667 21.68 7.88 46.64 4.40
1554 2825 1.080772 CTACACCTTCGTCAGCGCA 60.081 57.895 11.47 0.00 38.14 6.09
1558 2829 2.357517 CCTTCGTCAGCGCAACCT 60.358 61.111 11.47 0.00 38.14 3.50
1559 2830 1.961277 CCTTCGTCAGCGCAACCTT 60.961 57.895 11.47 0.00 38.14 3.50
1624 2895 2.099652 CTGGAGCAACGACCAGGACA 62.100 60.000 0.00 0.00 46.76 4.02
1678 2949 0.461548 CCTACTGCAGAATCTCCGCA 59.538 55.000 23.35 0.00 0.00 5.69
1885 3156 5.893255 ACATACATTTGTAAGATGCACCCAT 59.107 36.000 0.00 0.00 33.76 4.00
1944 3221 4.025979 CCGTTACCAATCTAAAGCTAAGCG 60.026 45.833 0.00 0.00 0.00 4.68
1948 3225 7.524065 GTTACCAATCTAAAGCTAAGCGAAAA 58.476 34.615 0.00 0.00 0.00 2.29
1949 3226 6.183309 ACCAATCTAAAGCTAAGCGAAAAG 57.817 37.500 0.00 0.00 0.00 2.27
1950 3227 5.705905 ACCAATCTAAAGCTAAGCGAAAAGT 59.294 36.000 0.00 0.00 0.00 2.66
1951 3228 6.024049 CCAATCTAAAGCTAAGCGAAAAGTG 58.976 40.000 0.00 0.00 0.00 3.16
1956 3236 1.264288 AGCTAAGCGAAAAGTGTGTGC 59.736 47.619 0.00 0.00 0.00 4.57
1972 3252 3.066342 TGTGTGCCGAAAACCGAAAATAA 59.934 39.130 0.00 0.00 41.76 1.40
1973 3253 4.043073 GTGTGCCGAAAACCGAAAATAAA 58.957 39.130 0.00 0.00 41.76 1.40
1974 3254 4.503370 GTGTGCCGAAAACCGAAAATAAAA 59.497 37.500 0.00 0.00 41.76 1.52
1976 3256 5.753921 TGTGCCGAAAACCGAAAATAAAATT 59.246 32.000 0.00 0.00 41.76 1.82
1977 3257 6.068300 GTGCCGAAAACCGAAAATAAAATTG 58.932 36.000 0.00 0.00 41.76 2.32
1978 3258 5.076765 GCCGAAAACCGAAAATAAAATTGC 58.923 37.500 0.00 0.00 41.76 3.56
1980 3260 6.295857 CCGAAAACCGAAAATAAAATTGCTG 58.704 36.000 0.00 0.00 41.76 4.41
1981 3261 6.295857 CGAAAACCGAAAATAAAATTGCTGG 58.704 36.000 0.00 0.00 41.76 4.85
1982 3262 5.605564 AAACCGAAAATAAAATTGCTGGC 57.394 34.783 0.00 0.00 0.00 4.85
1983 3263 4.264460 ACCGAAAATAAAATTGCTGGCA 57.736 36.364 0.00 0.00 0.00 4.92
1986 3266 5.810074 ACCGAAAATAAAATTGCTGGCATAC 59.190 36.000 0.00 0.00 0.00 2.39
1988 3268 5.051774 CGAAAATAAAATTGCTGGCATACCG 60.052 40.000 0.00 0.00 39.70 4.02
1989 3269 5.590530 AAATAAAATTGCTGGCATACCGA 57.409 34.783 0.00 0.00 39.70 4.69
1990 3270 5.789643 AATAAAATTGCTGGCATACCGAT 57.210 34.783 0.00 0.00 39.70 4.18
1991 3271 6.892658 AATAAAATTGCTGGCATACCGATA 57.107 33.333 0.00 0.00 39.70 2.92
1993 3273 5.376854 AAAATTGCTGGCATACCGATATC 57.623 39.130 0.00 0.00 39.70 1.63
1995 3275 1.644509 TGCTGGCATACCGATATCCT 58.355 50.000 0.00 0.00 39.70 3.24
1996 3276 1.977854 TGCTGGCATACCGATATCCTT 59.022 47.619 0.00 0.00 39.70 3.36
1997 3277 2.028112 TGCTGGCATACCGATATCCTTC 60.028 50.000 0.00 0.00 39.70 3.46
2006 3547 6.535508 GCATACCGATATCCTTCTTAACCATC 59.464 42.308 0.00 0.00 0.00 3.51
2015 3556 4.141135 TCCTTCTTAACCATCCAACCACAA 60.141 41.667 0.00 0.00 0.00 3.33
2019 3560 5.942961 TCTTAACCATCCAACCACAAGTTA 58.057 37.500 0.00 0.00 36.18 2.24
2025 3566 4.766891 CCATCCAACCACAAGTTAGTTCAT 59.233 41.667 0.00 0.00 36.18 2.57
2079 3625 9.782900 AGGGAAAGGGAATGAAAATAGAAAATA 57.217 29.630 0.00 0.00 0.00 1.40
2128 3675 7.755582 ACAAAAGTTCAAATTGAAGCACTAC 57.244 32.000 8.88 0.00 37.00 2.73
2139 3686 2.931969 TGAAGCACTACAATCGCATCAG 59.068 45.455 0.00 0.00 30.62 2.90
2146 3693 1.366679 ACAATCGCATCAGCTGAGTG 58.633 50.000 22.96 19.37 41.49 3.51
2155 3702 4.034858 CGCATCAGCTGAGTGTCATTTTAT 59.965 41.667 22.96 0.00 39.10 1.40
2165 3712 7.850982 GCTGAGTGTCATTTTATAATAACCACG 59.149 37.037 0.00 0.00 0.00 4.94
2192 3739 1.108776 TAGGAAATCGTCACCCCGAG 58.891 55.000 0.00 0.00 40.68 4.63
2205 3752 3.007635 CACCCCGAGGAAGAAAATGTAC 58.992 50.000 0.00 0.00 36.73 2.90
2218 3765 2.750141 AATGTACGAGAGGGCCTCTA 57.250 50.000 35.17 20.29 41.35 2.43
2219 3766 2.750141 ATGTACGAGAGGGCCTCTAA 57.250 50.000 35.17 20.69 41.35 2.10
2220 3767 2.519771 TGTACGAGAGGGCCTCTAAA 57.480 50.000 35.17 20.33 41.35 1.85
2267 3814 7.055667 ACAGAGTTAGAGAACACAAATCTCA 57.944 36.000 6.35 0.00 44.64 3.27
2276 3823 3.543680 ACACAAATCTCAGATACCCCG 57.456 47.619 0.00 0.00 0.00 5.73
2283 3830 0.605589 CTCAGATACCCCGATGAGGC 59.394 60.000 0.00 0.00 39.21 4.70
2291 3838 1.528542 CCCGATGAGGCCGAGACTA 60.529 63.158 0.00 0.00 39.21 2.59
2302 3849 2.678336 GGCCGAGACTATCCAAACTTTG 59.322 50.000 0.00 0.00 0.00 2.77
2307 3854 3.335579 AGACTATCCAAACTTTGTCGGC 58.664 45.455 0.88 0.00 0.00 5.54
2315 3862 1.594331 AACTTTGTCGGCCAGAACTC 58.406 50.000 2.24 0.00 0.00 3.01
2319 3866 1.629043 TTGTCGGCCAGAACTCTAGT 58.371 50.000 2.24 0.00 0.00 2.57
2328 3875 3.165875 CCAGAACTCTAGTTGGAGGACA 58.834 50.000 0.00 0.00 38.56 4.02
2329 3876 3.772025 CCAGAACTCTAGTTGGAGGACAT 59.228 47.826 0.00 0.00 38.56 3.06
2339 3887 4.884961 AGTTGGAGGACATATAGGACAGT 58.115 43.478 0.00 0.00 0.00 3.55
2341 3889 6.071984 AGTTGGAGGACATATAGGACAGTAG 58.928 44.000 0.00 0.00 0.00 2.57
2343 3891 4.202684 TGGAGGACATATAGGACAGTAGGG 60.203 50.000 0.00 0.00 0.00 3.53
2344 3892 4.202695 GGAGGACATATAGGACAGTAGGGT 60.203 50.000 0.00 0.00 0.00 4.34
2358 3906 2.000447 GTAGGGTCGAGACAAACATGC 59.000 52.381 5.55 0.00 0.00 4.06
2360 3908 0.517316 GGGTCGAGACAAACATGCAC 59.483 55.000 5.55 0.00 0.00 4.57
2374 3922 2.729491 GCACAAGAAAACGCCGGC 60.729 61.111 19.07 19.07 0.00 6.13
2379 3927 3.524648 AAGAAAACGCCGGCCTCGA 62.525 57.895 23.46 0.00 39.00 4.04
2397 3945 4.322349 CCTCGAAGAATCAGACCTGTTTCT 60.322 45.833 14.36 14.36 46.03 2.52
2400 3948 4.991056 CGAAGAATCAGACCTGTTTCTCAA 59.009 41.667 18.32 0.00 44.38 3.02
2407 3955 2.777692 AGACCTGTTTCTCAACCTTCCA 59.222 45.455 0.00 0.00 31.02 3.53
2434 3982 1.339610 CGAGGAAGCATCTCCGAATCT 59.660 52.381 0.00 0.00 40.75 2.40
2461 4009 3.663198 AGGCAGAGAGACCTTATTCCAT 58.337 45.455 0.00 0.00 29.74 3.41
2466 4014 2.439507 GAGAGACCTTATTCCATGCCCA 59.560 50.000 0.00 0.00 0.00 5.36
2467 4015 2.852449 AGAGACCTTATTCCATGCCCAA 59.148 45.455 0.00 0.00 0.00 4.12
2468 4016 3.464833 AGAGACCTTATTCCATGCCCAAT 59.535 43.478 0.00 0.00 0.00 3.16
2485 4033 3.704231 ATGGCACCATCACCTCGCC 62.704 63.158 0.00 0.00 43.28 5.54
2486 4034 4.408821 GGCACCATCACCTCGCCA 62.409 66.667 0.00 0.00 42.50 5.69
2490 4038 2.436646 CCATCACCTCGCCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
2538 4086 5.450818 TTTCTAACCCTACTACTACCGGA 57.549 43.478 9.46 0.00 0.00 5.14
2539 4087 4.423625 TCTAACCCTACTACTACCGGAC 57.576 50.000 9.46 0.00 0.00 4.79
2545 4093 5.770919 ACCCTACTACTACCGGACTAAATT 58.229 41.667 9.46 0.00 0.00 1.82
2575 4124 2.203351 GCCCCTTCTATTGCCGGG 60.203 66.667 2.18 0.00 36.78 5.73
2577 4126 3.331293 CCCTTCTATTGCCGGGGT 58.669 61.111 2.18 0.00 32.91 4.95
2590 4139 0.178932 CCGGGGTGATAGATGGAGGA 60.179 60.000 0.00 0.00 0.00 3.71
2592 4141 2.047061 CGGGGTGATAGATGGAGGAAA 58.953 52.381 0.00 0.00 0.00 3.13
2607 4156 1.075659 GAAAGGGGCCTGCAGTCTT 59.924 57.895 13.81 7.87 0.00 3.01
2611 4160 2.361737 GGGCCTGCAGTCTTTCCC 60.362 66.667 13.81 10.74 0.00 3.97
2616 4165 1.078848 CTGCAGTCTTTCCCGGGAG 60.079 63.158 25.26 13.89 0.00 4.30
2618 4167 0.543410 TGCAGTCTTTCCCGGGAGTA 60.543 55.000 25.26 15.11 0.00 2.59
2631 4180 2.622452 CCGGGAGTAAGGGTAGAACAGA 60.622 54.545 0.00 0.00 0.00 3.41
2632 4181 3.297736 CGGGAGTAAGGGTAGAACAGAT 58.702 50.000 0.00 0.00 0.00 2.90
2633 4182 3.705072 CGGGAGTAAGGGTAGAACAGATT 59.295 47.826 0.00 0.00 0.00 2.40
2644 4197 1.087501 GAACAGATTCGCTTGTCCCC 58.912 55.000 0.00 0.00 0.00 4.81
2648 4201 2.158900 ACAGATTCGCTTGTCCCCTATG 60.159 50.000 0.00 0.00 0.00 2.23
2663 4216 1.062962 CCTATGGCCTTGTTTGGGGAT 60.063 52.381 3.32 0.00 0.00 3.85
2681 4234 2.563179 GGATTAGGAGCGGATAGAAGCA 59.437 50.000 0.00 0.00 35.48 3.91
2702 4255 7.116075 AGCAATTCACAATTATATGCACCTT 57.884 32.000 0.00 0.00 0.00 3.50
2730 4283 4.576330 CCAAAAGGGTCTGGTTAGATCT 57.424 45.455 0.00 0.00 34.35 2.75
2731 4284 4.923415 CCAAAAGGGTCTGGTTAGATCTT 58.077 43.478 0.00 0.00 34.35 2.40
2735 4288 6.547930 AAAGGGTCTGGTTAGATCTTAGTC 57.452 41.667 0.00 0.00 34.35 2.59
2736 4289 5.208294 AGGGTCTGGTTAGATCTTAGTCA 57.792 43.478 0.00 0.00 34.35 3.41
2740 4293 6.606395 GGGTCTGGTTAGATCTTAGTCAACTA 59.394 42.308 0.00 0.00 34.35 2.24
2742 4295 8.697292 GGTCTGGTTAGATCTTAGTCAACTAAT 58.303 37.037 0.00 0.00 35.29 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.823460 ATAAAAGGCCGCCACCAATG 59.177 50.000 13.15 0.00 0.00 2.82
2 3 0.823460 CATAAAAGGCCGCCACCAAT 59.177 50.000 13.15 0.00 0.00 3.16
3 4 1.254284 CCATAAAAGGCCGCCACCAA 61.254 55.000 13.15 0.00 0.00 3.67
4 5 1.680651 CCATAAAAGGCCGCCACCA 60.681 57.895 13.15 0.00 0.00 4.17
5 6 1.680989 ACCATAAAAGGCCGCCACC 60.681 57.895 13.15 0.00 0.00 4.61
6 7 1.510844 CACCATAAAAGGCCGCCAC 59.489 57.895 13.15 0.00 0.00 5.01
7 8 2.347322 GCACCATAAAAGGCCGCCA 61.347 57.895 13.15 0.00 0.00 5.69
8 9 2.347322 TGCACCATAAAAGGCCGCC 61.347 57.895 0.00 0.00 31.26 6.13
9 10 1.153842 GTGCACCATAAAAGGCCGC 60.154 57.895 5.22 0.00 0.00 6.53
10 11 1.247419 TGGTGCACCATAAAAGGCCG 61.247 55.000 34.74 0.00 42.01 6.13
11 12 0.972883 TTGGTGCACCATAAAAGGCC 59.027 50.000 37.97 7.62 46.97 5.19
12 13 1.618343 AGTTGGTGCACCATAAAAGGC 59.382 47.619 37.97 20.43 46.97 4.35
13 14 2.890311 TGAGTTGGTGCACCATAAAAGG 59.110 45.455 37.97 0.00 46.97 3.11
14 15 4.789012 ATGAGTTGGTGCACCATAAAAG 57.211 40.909 37.97 0.00 46.97 2.27
15 16 5.537188 GAAATGAGTTGGTGCACCATAAAA 58.463 37.500 37.97 23.90 46.97 1.52
16 17 4.320861 CGAAATGAGTTGGTGCACCATAAA 60.321 41.667 37.97 21.95 46.97 1.40
17 18 3.190327 CGAAATGAGTTGGTGCACCATAA 59.810 43.478 37.97 22.75 46.97 1.90
18 19 2.746904 CGAAATGAGTTGGTGCACCATA 59.253 45.455 37.97 24.92 46.97 2.74
19 20 1.541147 CGAAATGAGTTGGTGCACCAT 59.459 47.619 37.97 25.38 46.97 3.55
20 21 0.950836 CGAAATGAGTTGGTGCACCA 59.049 50.000 34.74 34.74 45.94 4.17
21 22 1.234821 TCGAAATGAGTTGGTGCACC 58.765 50.000 29.67 29.67 0.00 5.01
22 23 2.032799 TGTTCGAAATGAGTTGGTGCAC 59.967 45.455 8.80 8.80 0.00 4.57
23 24 2.293170 TGTTCGAAATGAGTTGGTGCA 58.707 42.857 0.00 0.00 0.00 4.57
24 25 3.347958 TTGTTCGAAATGAGTTGGTGC 57.652 42.857 0.00 0.00 0.00 5.01
25 26 4.041723 GGTTTGTTCGAAATGAGTTGGTG 58.958 43.478 0.00 0.00 0.00 4.17
26 27 3.697045 TGGTTTGTTCGAAATGAGTTGGT 59.303 39.130 0.00 0.00 0.00 3.67
27 28 4.300189 TGGTTTGTTCGAAATGAGTTGG 57.700 40.909 0.00 0.00 0.00 3.77
28 29 6.074356 GGATTTGGTTTGTTCGAAATGAGTTG 60.074 38.462 0.00 0.00 0.00 3.16
29 30 5.983118 GGATTTGGTTTGTTCGAAATGAGTT 59.017 36.000 0.00 0.00 0.00 3.01
30 31 5.301805 AGGATTTGGTTTGTTCGAAATGAGT 59.698 36.000 0.00 0.00 0.00 3.41
31 32 5.772521 AGGATTTGGTTTGTTCGAAATGAG 58.227 37.500 0.00 0.00 0.00 2.90
32 33 5.278758 GGAGGATTTGGTTTGTTCGAAATGA 60.279 40.000 0.00 0.00 0.00 2.57
33 34 4.923281 GGAGGATTTGGTTTGTTCGAAATG 59.077 41.667 0.00 0.00 0.00 2.32
34 35 4.586841 TGGAGGATTTGGTTTGTTCGAAAT 59.413 37.500 0.00 0.00 0.00 2.17
35 36 3.954904 TGGAGGATTTGGTTTGTTCGAAA 59.045 39.130 0.00 0.00 0.00 3.46
36 37 3.556999 TGGAGGATTTGGTTTGTTCGAA 58.443 40.909 0.00 0.00 0.00 3.71
37 38 3.216187 TGGAGGATTTGGTTTGTTCGA 57.784 42.857 0.00 0.00 0.00 3.71
38 39 4.314740 TTTGGAGGATTTGGTTTGTTCG 57.685 40.909 0.00 0.00 0.00 3.95
39 40 5.423886 TGTTTTGGAGGATTTGGTTTGTTC 58.576 37.500 0.00 0.00 0.00 3.18
40 41 5.427378 CTGTTTTGGAGGATTTGGTTTGTT 58.573 37.500 0.00 0.00 0.00 2.83
41 42 4.683129 GCTGTTTTGGAGGATTTGGTTTGT 60.683 41.667 0.00 0.00 0.00 2.83
42 43 3.809279 GCTGTTTTGGAGGATTTGGTTTG 59.191 43.478 0.00 0.00 0.00 2.93
43 44 3.454082 TGCTGTTTTGGAGGATTTGGTTT 59.546 39.130 0.00 0.00 0.00 3.27
44 45 3.037549 TGCTGTTTTGGAGGATTTGGTT 58.962 40.909 0.00 0.00 0.00 3.67
45 46 2.676748 TGCTGTTTTGGAGGATTTGGT 58.323 42.857 0.00 0.00 0.00 3.67
46 47 3.258872 TGATGCTGTTTTGGAGGATTTGG 59.741 43.478 0.00 0.00 0.00 3.28
47 48 4.524316 TGATGCTGTTTTGGAGGATTTG 57.476 40.909 0.00 0.00 0.00 2.32
48 49 4.773674 TGATGATGCTGTTTTGGAGGATTT 59.226 37.500 0.00 0.00 0.00 2.17
49 50 4.159135 GTGATGATGCTGTTTTGGAGGATT 59.841 41.667 0.00 0.00 0.00 3.01
50 51 3.698040 GTGATGATGCTGTTTTGGAGGAT 59.302 43.478 0.00 0.00 0.00 3.24
51 52 3.084039 GTGATGATGCTGTTTTGGAGGA 58.916 45.455 0.00 0.00 0.00 3.71
52 53 2.821378 TGTGATGATGCTGTTTTGGAGG 59.179 45.455 0.00 0.00 0.00 4.30
53 54 4.216902 TCTTGTGATGATGCTGTTTTGGAG 59.783 41.667 0.00 0.00 0.00 3.86
54 55 4.143543 TCTTGTGATGATGCTGTTTTGGA 58.856 39.130 0.00 0.00 0.00 3.53
55 56 4.482386 CTCTTGTGATGATGCTGTTTTGG 58.518 43.478 0.00 0.00 0.00 3.28
56 57 3.918591 GCTCTTGTGATGATGCTGTTTTG 59.081 43.478 0.00 0.00 0.00 2.44
57 58 3.825014 AGCTCTTGTGATGATGCTGTTTT 59.175 39.130 0.00 0.00 0.00 2.43
58 59 3.418995 AGCTCTTGTGATGATGCTGTTT 58.581 40.909 0.00 0.00 0.00 2.83
59 60 3.008330 GAGCTCTTGTGATGATGCTGTT 58.992 45.455 6.43 0.00 0.00 3.16
60 61 2.236644 AGAGCTCTTGTGATGATGCTGT 59.763 45.455 11.45 0.00 0.00 4.40
61 62 2.609916 CAGAGCTCTTGTGATGATGCTG 59.390 50.000 15.27 0.00 0.00 4.41
62 63 2.907634 CAGAGCTCTTGTGATGATGCT 58.092 47.619 15.27 0.00 0.00 3.79
63 64 1.331138 GCAGAGCTCTTGTGATGATGC 59.669 52.381 15.27 8.34 0.00 3.91
64 65 1.941294 GGCAGAGCTCTTGTGATGATG 59.059 52.381 15.27 1.01 0.00 3.07
65 66 1.134159 GGGCAGAGCTCTTGTGATGAT 60.134 52.381 15.27 0.00 0.00 2.45
66 67 0.251354 GGGCAGAGCTCTTGTGATGA 59.749 55.000 15.27 0.00 0.00 2.92
67 68 0.252479 AGGGCAGAGCTCTTGTGATG 59.748 55.000 15.27 3.48 34.72 3.07
68 69 0.540923 GAGGGCAGAGCTCTTGTGAT 59.459 55.000 15.27 0.00 40.72 3.06
69 70 1.548357 GGAGGGCAGAGCTCTTGTGA 61.548 60.000 15.27 0.00 40.72 3.58
70 71 1.078567 GGAGGGCAGAGCTCTTGTG 60.079 63.158 15.27 5.15 40.72 3.33
71 72 1.229464 AGGAGGGCAGAGCTCTTGT 60.229 57.895 15.27 0.00 40.72 3.16
72 73 1.521616 GAGGAGGGCAGAGCTCTTG 59.478 63.158 15.27 11.01 40.72 3.02
73 74 1.688884 GGAGGAGGGCAGAGCTCTT 60.689 63.158 15.27 0.00 40.72 2.85
74 75 2.042025 GGAGGAGGGCAGAGCTCT 60.042 66.667 11.45 11.45 44.87 4.09
75 76 1.271127 AAAGGAGGAGGGCAGAGCTC 61.271 60.000 5.27 5.27 0.00 4.09
76 77 1.229788 AAAGGAGGAGGGCAGAGCT 60.230 57.895 0.00 0.00 0.00 4.09
77 78 1.077858 CAAAGGAGGAGGGCAGAGC 60.078 63.158 0.00 0.00 0.00 4.09
78 79 0.695347 AACAAAGGAGGAGGGCAGAG 59.305 55.000 0.00 0.00 0.00 3.35
79 80 1.073923 GAAACAAAGGAGGAGGGCAGA 59.926 52.381 0.00 0.00 0.00 4.26
80 81 1.202927 TGAAACAAAGGAGGAGGGCAG 60.203 52.381 0.00 0.00 0.00 4.85
81 82 0.850100 TGAAACAAAGGAGGAGGGCA 59.150 50.000 0.00 0.00 0.00 5.36
82 83 1.539157 CTGAAACAAAGGAGGAGGGC 58.461 55.000 0.00 0.00 0.00 5.19
83 84 1.074566 AGCTGAAACAAAGGAGGAGGG 59.925 52.381 0.00 0.00 0.00 4.30
84 85 2.575805 AGCTGAAACAAAGGAGGAGG 57.424 50.000 0.00 0.00 0.00 4.30
85 86 4.543590 TCTAGCTGAAACAAAGGAGGAG 57.456 45.455 0.00 0.00 0.00 3.69
86 87 4.593206 TCTTCTAGCTGAAACAAAGGAGGA 59.407 41.667 0.00 0.00 33.79 3.71
87 88 4.899502 TCTTCTAGCTGAAACAAAGGAGG 58.100 43.478 0.00 0.00 33.79 4.30
88 89 5.353678 CCATCTTCTAGCTGAAACAAAGGAG 59.646 44.000 0.00 0.00 33.79 3.69
89 90 5.013079 TCCATCTTCTAGCTGAAACAAAGGA 59.987 40.000 0.00 0.00 33.79 3.36
90 91 5.248640 TCCATCTTCTAGCTGAAACAAAGG 58.751 41.667 0.00 0.00 33.79 3.11
91 92 6.596888 TCATCCATCTTCTAGCTGAAACAAAG 59.403 38.462 0.00 0.00 33.79 2.77
92 93 6.475504 TCATCCATCTTCTAGCTGAAACAAA 58.524 36.000 0.00 0.00 33.79 2.83
93 94 6.053632 TCATCCATCTTCTAGCTGAAACAA 57.946 37.500 0.00 0.00 33.79 2.83
94 95 5.682234 TCATCCATCTTCTAGCTGAAACA 57.318 39.130 0.00 0.00 33.79 2.83
95 96 5.295540 GGTTCATCCATCTTCTAGCTGAAAC 59.704 44.000 0.00 0.00 33.40 2.78
96 97 5.045651 TGGTTCATCCATCTTCTAGCTGAAA 60.046 40.000 0.00 0.00 41.93 2.69
97 98 4.471025 TGGTTCATCCATCTTCTAGCTGAA 59.529 41.667 0.00 0.00 41.93 3.02
98 99 4.033009 TGGTTCATCCATCTTCTAGCTGA 58.967 43.478 0.00 0.00 41.93 4.26
99 100 4.412796 TGGTTCATCCATCTTCTAGCTG 57.587 45.455 0.00 0.00 41.93 4.24
100 101 5.131642 TGATTGGTTCATCCATCTTCTAGCT 59.868 40.000 0.00 0.00 46.60 3.32
101 102 5.371526 TGATTGGTTCATCCATCTTCTAGC 58.628 41.667 0.00 0.00 46.60 3.42
102 103 5.996513 CCTGATTGGTTCATCCATCTTCTAG 59.003 44.000 0.00 0.00 46.60 2.43
103 104 5.688500 GCCTGATTGGTTCATCCATCTTCTA 60.689 44.000 0.00 0.00 46.60 2.10
104 105 4.789807 CCTGATTGGTTCATCCATCTTCT 58.210 43.478 0.00 0.00 46.60 2.85
105 106 3.317430 GCCTGATTGGTTCATCCATCTTC 59.683 47.826 0.00 0.00 46.60 2.87
106 107 3.294214 GCCTGATTGGTTCATCCATCTT 58.706 45.455 0.00 0.00 46.60 2.40
107 108 2.423947 GGCCTGATTGGTTCATCCATCT 60.424 50.000 0.00 0.00 46.60 2.90
108 109 1.959282 GGCCTGATTGGTTCATCCATC 59.041 52.381 0.00 0.00 46.60 3.51
109 110 1.412074 GGGCCTGATTGGTTCATCCAT 60.412 52.381 0.84 0.00 46.60 3.41
110 111 0.033208 GGGCCTGATTGGTTCATCCA 60.033 55.000 0.84 0.00 45.60 3.41
111 112 0.756815 GGGGCCTGATTGGTTCATCC 60.757 60.000 0.84 0.00 38.35 3.51
112 113 0.033208 TGGGGCCTGATTGGTTCATC 60.033 55.000 0.84 0.00 38.35 2.92
113 114 0.324645 GTGGGGCCTGATTGGTTCAT 60.325 55.000 0.84 0.00 38.35 2.57
114 115 1.076549 GTGGGGCCTGATTGGTTCA 59.923 57.895 0.84 0.00 38.35 3.18
115 116 0.324645 ATGTGGGGCCTGATTGGTTC 60.325 55.000 0.84 0.00 38.35 3.62
116 117 0.615544 CATGTGGGGCCTGATTGGTT 60.616 55.000 0.84 0.00 38.35 3.67
117 118 1.000739 CATGTGGGGCCTGATTGGT 59.999 57.895 0.84 0.00 38.35 3.67
118 119 0.615544 AACATGTGGGGCCTGATTGG 60.616 55.000 0.84 0.00 39.35 3.16
119 120 1.269012 AAACATGTGGGGCCTGATTG 58.731 50.000 0.84 0.00 0.00 2.67
120 121 2.028561 AAAACATGTGGGGCCTGATT 57.971 45.000 0.84 0.00 0.00 2.57
121 122 2.738743 CTAAAACATGTGGGGCCTGAT 58.261 47.619 0.84 0.00 0.00 2.90
122 123 1.890573 GCTAAAACATGTGGGGCCTGA 60.891 52.381 0.84 0.00 0.00 3.86
123 124 0.532115 GCTAAAACATGTGGGGCCTG 59.468 55.000 0.84 0.00 0.00 4.85
124 125 0.965363 CGCTAAAACATGTGGGGCCT 60.965 55.000 0.84 0.00 0.00 5.19
125 126 1.248101 ACGCTAAAACATGTGGGGCC 61.248 55.000 0.00 0.00 0.00 5.80
126 127 0.109319 CACGCTAAAACATGTGGGGC 60.109 55.000 0.00 1.12 0.00 5.80
127 128 0.525761 CCACGCTAAAACATGTGGGG 59.474 55.000 0.00 1.68 46.37 4.96
130 131 2.095768 CAGGACCACGCTAAAACATGTG 60.096 50.000 0.00 0.00 0.00 3.21
131 132 2.151202 CAGGACCACGCTAAAACATGT 58.849 47.619 0.00 0.00 0.00 3.21
132 133 1.468520 CCAGGACCACGCTAAAACATG 59.531 52.381 0.00 0.00 0.00 3.21
133 134 1.613255 CCCAGGACCACGCTAAAACAT 60.613 52.381 0.00 0.00 0.00 2.71
134 135 0.250553 CCCAGGACCACGCTAAAACA 60.251 55.000 0.00 0.00 0.00 2.83
135 136 0.958876 CCCCAGGACCACGCTAAAAC 60.959 60.000 0.00 0.00 0.00 2.43
136 137 1.377229 CCCCAGGACCACGCTAAAA 59.623 57.895 0.00 0.00 0.00 1.52
137 138 2.598787 CCCCCAGGACCACGCTAAA 61.599 63.158 0.00 0.00 33.47 1.85
138 139 3.006728 CCCCCAGGACCACGCTAA 61.007 66.667 0.00 0.00 33.47 3.09
159 160 4.882128 ATTGATGGCAAAGGTGTGGAACC 61.882 47.826 0.00 0.00 41.81 3.62
160 161 1.327303 TGATGGCAAAGGTGTGGAAC 58.673 50.000 0.00 0.00 37.35 3.62
161 162 2.079170 TTGATGGCAAAGGTGTGGAA 57.921 45.000 0.00 0.00 0.00 3.53
162 163 2.307496 ATTGATGGCAAAGGTGTGGA 57.693 45.000 0.00 0.00 37.59 4.02
163 164 3.328505 GAAATTGATGGCAAAGGTGTGG 58.671 45.455 0.00 0.00 37.59 4.17
164 165 3.244146 TGGAAATTGATGGCAAAGGTGTG 60.244 43.478 0.00 0.00 37.59 3.82
165 166 2.971330 TGGAAATTGATGGCAAAGGTGT 59.029 40.909 0.00 0.00 37.59 4.16
166 167 3.681593 TGGAAATTGATGGCAAAGGTG 57.318 42.857 0.00 0.00 37.59 4.00
167 168 4.406649 CCTATGGAAATTGATGGCAAAGGT 59.593 41.667 0.00 0.00 37.59 3.50
168 169 4.650588 TCCTATGGAAATTGATGGCAAAGG 59.349 41.667 0.00 0.00 37.59 3.11
169 170 5.857471 TCCTATGGAAATTGATGGCAAAG 57.143 39.130 0.00 0.00 37.59 2.77
170 171 5.898397 TGATCCTATGGAAATTGATGGCAAA 59.102 36.000 0.00 0.00 34.51 3.68
171 172 5.302568 GTGATCCTATGGAAATTGATGGCAA 59.697 40.000 0.00 0.00 34.34 4.52
172 173 4.828939 GTGATCCTATGGAAATTGATGGCA 59.171 41.667 0.00 0.00 34.34 4.92
173 174 5.048224 CAGTGATCCTATGGAAATTGATGGC 60.048 44.000 0.00 0.00 34.34 4.40
174 175 5.048224 GCAGTGATCCTATGGAAATTGATGG 60.048 44.000 0.00 0.00 34.34 3.51
175 176 5.533528 TGCAGTGATCCTATGGAAATTGATG 59.466 40.000 0.00 0.00 34.34 3.07
176 177 5.698104 TGCAGTGATCCTATGGAAATTGAT 58.302 37.500 0.00 0.00 34.34 2.57
177 178 5.114764 TGCAGTGATCCTATGGAAATTGA 57.885 39.130 0.00 0.00 34.34 2.57
178 179 5.533528 TCATGCAGTGATCCTATGGAAATTG 59.466 40.000 0.00 0.00 34.34 2.32
179 180 5.698104 TCATGCAGTGATCCTATGGAAATT 58.302 37.500 0.00 0.00 34.34 1.82
180 181 5.314718 TCATGCAGTGATCCTATGGAAAT 57.685 39.130 0.00 0.00 34.34 2.17
181 182 4.776435 TCATGCAGTGATCCTATGGAAA 57.224 40.909 0.00 0.00 34.34 3.13
182 183 4.987963 ATCATGCAGTGATCCTATGGAA 57.012 40.909 0.00 0.00 44.23 3.53
183 184 4.648651 CAATCATGCAGTGATCCTATGGA 58.351 43.478 10.70 0.00 46.80 3.41
205 206 0.251354 TCCATGTCTTCTGCTCCTGC 59.749 55.000 0.00 0.00 40.20 4.85
206 207 2.354259 GTTCCATGTCTTCTGCTCCTG 58.646 52.381 0.00 0.00 0.00 3.86
207 208 1.066573 CGTTCCATGTCTTCTGCTCCT 60.067 52.381 0.00 0.00 0.00 3.69
208 209 1.066858 TCGTTCCATGTCTTCTGCTCC 60.067 52.381 0.00 0.00 0.00 4.70
209 210 2.370281 TCGTTCCATGTCTTCTGCTC 57.630 50.000 0.00 0.00 0.00 4.26
210 211 2.839486 TTCGTTCCATGTCTTCTGCT 57.161 45.000 0.00 0.00 0.00 4.24
211 212 2.352960 GGATTCGTTCCATGTCTTCTGC 59.647 50.000 0.00 0.00 44.74 4.26
222 223 4.664150 AGAGAAGATGAGGATTCGTTCC 57.336 45.455 0.00 0.00 45.85 3.62
223 224 5.007823 TCGTAGAGAAGATGAGGATTCGTTC 59.992 44.000 0.00 0.00 0.00 3.95
224 225 4.882427 TCGTAGAGAAGATGAGGATTCGTT 59.118 41.667 0.00 0.00 0.00 3.85
225 226 4.452825 TCGTAGAGAAGATGAGGATTCGT 58.547 43.478 0.00 0.00 0.00 3.85
241 242 2.750141 ATTAGTCCCCTGCTCGTAGA 57.250 50.000 0.00 0.00 0.00 2.59
242 243 2.820787 CCTATTAGTCCCCTGCTCGTAG 59.179 54.545 0.00 0.00 0.00 3.51
243 244 2.872732 CCTATTAGTCCCCTGCTCGTA 58.127 52.381 0.00 0.00 0.00 3.43
244 245 1.705873 CCTATTAGTCCCCTGCTCGT 58.294 55.000 0.00 0.00 0.00 4.18
245 246 0.318762 GCCTATTAGTCCCCTGCTCG 59.681 60.000 0.00 0.00 0.00 5.03
246 247 0.318762 CGCCTATTAGTCCCCTGCTC 59.681 60.000 0.00 0.00 0.00 4.26
247 248 0.105658 TCGCCTATTAGTCCCCTGCT 60.106 55.000 0.00 0.00 0.00 4.24
248 249 0.756903 TTCGCCTATTAGTCCCCTGC 59.243 55.000 0.00 0.00 0.00 4.85
249 250 2.352814 CGATTCGCCTATTAGTCCCCTG 60.353 54.545 0.00 0.00 0.00 4.45
250 251 1.893801 CGATTCGCCTATTAGTCCCCT 59.106 52.381 0.00 0.00 0.00 4.79
251 252 1.067071 CCGATTCGCCTATTAGTCCCC 60.067 57.143 0.00 0.00 0.00 4.81
252 253 1.672145 GCCGATTCGCCTATTAGTCCC 60.672 57.143 0.00 0.00 0.00 4.46
253 254 1.000506 TGCCGATTCGCCTATTAGTCC 59.999 52.381 0.00 0.00 0.00 3.85
254 255 2.433868 TGCCGATTCGCCTATTAGTC 57.566 50.000 0.00 0.00 0.00 2.59
255 256 2.102588 ACTTGCCGATTCGCCTATTAGT 59.897 45.455 0.00 0.00 0.00 2.24
256 257 2.755650 ACTTGCCGATTCGCCTATTAG 58.244 47.619 0.00 0.00 0.00 1.73
257 258 2.902705 ACTTGCCGATTCGCCTATTA 57.097 45.000 0.00 0.00 0.00 0.98
258 259 2.038387 AACTTGCCGATTCGCCTATT 57.962 45.000 0.00 0.00 0.00 1.73
259 260 2.902705 TAACTTGCCGATTCGCCTAT 57.097 45.000 0.00 0.00 0.00 2.57
260 261 2.676632 TTAACTTGCCGATTCGCCTA 57.323 45.000 0.00 0.00 0.00 3.93
261 262 1.940613 GATTAACTTGCCGATTCGCCT 59.059 47.619 0.00 0.00 0.00 5.52
262 263 1.332904 CGATTAACTTGCCGATTCGCC 60.333 52.381 0.00 0.00 0.00 5.54
263 264 1.332904 CCGATTAACTTGCCGATTCGC 60.333 52.381 0.00 0.00 0.00 4.70
264 265 1.931172 ACCGATTAACTTGCCGATTCG 59.069 47.619 0.00 0.00 0.00 3.34
265 266 2.933906 TGACCGATTAACTTGCCGATTC 59.066 45.455 0.00 0.00 0.00 2.52
266 267 2.980568 TGACCGATTAACTTGCCGATT 58.019 42.857 0.00 0.00 0.00 3.34
267 268 2.684001 TGACCGATTAACTTGCCGAT 57.316 45.000 0.00 0.00 0.00 4.18
268 269 2.684001 ATGACCGATTAACTTGCCGA 57.316 45.000 0.00 0.00 0.00 5.54
269 270 4.509970 TGATTATGACCGATTAACTTGCCG 59.490 41.667 0.00 0.00 0.00 5.69
270 271 6.038271 ACTTGATTATGACCGATTAACTTGCC 59.962 38.462 0.00 0.00 0.00 4.52
271 272 7.016361 ACTTGATTATGACCGATTAACTTGC 57.984 36.000 0.00 0.00 0.00 4.01
273 274 9.886132 ACTAACTTGATTATGACCGATTAACTT 57.114 29.630 0.00 0.00 0.00 2.66
274 275 9.530633 GACTAACTTGATTATGACCGATTAACT 57.469 33.333 0.00 0.00 0.00 2.24
275 276 9.309516 TGACTAACTTGATTATGACCGATTAAC 57.690 33.333 0.00 0.00 0.00 2.01
276 277 9.529325 CTGACTAACTTGATTATGACCGATTAA 57.471 33.333 0.00 0.00 0.00 1.40
277 278 8.692710 ACTGACTAACTTGATTATGACCGATTA 58.307 33.333 0.00 0.00 0.00 1.75
278 279 7.556844 ACTGACTAACTTGATTATGACCGATT 58.443 34.615 0.00 0.00 0.00 3.34
279 280 7.113658 ACTGACTAACTTGATTATGACCGAT 57.886 36.000 0.00 0.00 0.00 4.18
280 281 6.152154 TGACTGACTAACTTGATTATGACCGA 59.848 38.462 0.00 0.00 0.00 4.69
281 282 6.330278 TGACTGACTAACTTGATTATGACCG 58.670 40.000 0.00 0.00 0.00 4.79
282 283 8.723942 AATGACTGACTAACTTGATTATGACC 57.276 34.615 0.00 0.00 0.00 4.02
310 311 9.063615 GGATTACCGAGTAACCAATTAATTGAT 57.936 33.333 26.32 17.45 33.93 2.57
311 312 8.269317 AGGATTACCGAGTAACCAATTAATTGA 58.731 33.333 26.32 6.84 39.52 2.57
312 313 8.446599 AGGATTACCGAGTAACCAATTAATTG 57.553 34.615 19.40 19.40 41.83 2.32
314 315 9.720769 CATAGGATTACCGAGTAACCAATTAAT 57.279 33.333 12.84 0.00 41.83 1.40
315 316 8.926374 TCATAGGATTACCGAGTAACCAATTAA 58.074 33.333 12.84 0.00 41.83 1.40
316 317 8.481492 TCATAGGATTACCGAGTAACCAATTA 57.519 34.615 12.84 0.00 41.83 1.40
317 318 7.070821 ACTCATAGGATTACCGAGTAACCAATT 59.929 37.037 0.00 0.00 41.83 2.32
318 319 6.553852 ACTCATAGGATTACCGAGTAACCAAT 59.446 38.462 0.00 0.00 41.83 3.16
319 320 5.895534 ACTCATAGGATTACCGAGTAACCAA 59.104 40.000 0.00 0.00 41.83 3.67
320 321 5.452255 ACTCATAGGATTACCGAGTAACCA 58.548 41.667 0.00 5.29 41.83 3.67
321 322 7.143514 CTACTCATAGGATTACCGAGTAACC 57.856 44.000 0.00 4.05 36.75 2.85
335 336 4.466370 TGCCGATTAATCCCTACTCATAGG 59.534 45.833 9.87 2.61 46.99 2.57
336 337 5.661056 TGCCGATTAATCCCTACTCATAG 57.339 43.478 9.87 0.00 0.00 2.23
337 338 5.542635 ACTTGCCGATTAATCCCTACTCATA 59.457 40.000 9.87 0.00 0.00 2.15
338 339 4.348168 ACTTGCCGATTAATCCCTACTCAT 59.652 41.667 9.87 0.00 0.00 2.90
339 340 3.709653 ACTTGCCGATTAATCCCTACTCA 59.290 43.478 9.87 0.00 0.00 3.41
340 341 4.338379 ACTTGCCGATTAATCCCTACTC 57.662 45.455 9.87 0.00 0.00 2.59
341 342 4.772886 AACTTGCCGATTAATCCCTACT 57.227 40.909 9.87 0.00 0.00 2.57
342 343 6.053650 AGTTAACTTGCCGATTAATCCCTAC 58.946 40.000 9.87 0.00 0.00 3.18
343 344 6.243216 AGTTAACTTGCCGATTAATCCCTA 57.757 37.500 9.87 0.00 0.00 3.53
344 345 5.112129 AGTTAACTTGCCGATTAATCCCT 57.888 39.130 9.87 0.00 0.00 4.20
345 346 6.053650 ACTAGTTAACTTGCCGATTAATCCC 58.946 40.000 14.49 2.26 0.00 3.85
346 347 7.279313 TGAACTAGTTAACTTGCCGATTAATCC 59.721 37.037 14.49 0.00 0.00 3.01
347 348 8.193250 TGAACTAGTTAACTTGCCGATTAATC 57.807 34.615 14.49 5.30 0.00 1.75
348 349 8.038944 TCTGAACTAGTTAACTTGCCGATTAAT 58.961 33.333 14.49 0.00 0.00 1.40
349 350 7.330208 GTCTGAACTAGTTAACTTGCCGATTAA 59.670 37.037 14.49 0.00 0.00 1.40
350 351 6.810182 GTCTGAACTAGTTAACTTGCCGATTA 59.190 38.462 14.49 0.00 0.00 1.75
351 352 5.638234 GTCTGAACTAGTTAACTTGCCGATT 59.362 40.000 14.49 1.99 0.00 3.34
352 353 5.169295 GTCTGAACTAGTTAACTTGCCGAT 58.831 41.667 14.49 0.00 0.00 4.18
353 354 4.553323 GTCTGAACTAGTTAACTTGCCGA 58.447 43.478 14.49 4.12 0.00 5.54
354 355 3.364023 CGTCTGAACTAGTTAACTTGCCG 59.636 47.826 14.49 3.17 0.00 5.69
355 356 4.553323 TCGTCTGAACTAGTTAACTTGCC 58.447 43.478 14.49 8.08 0.00 4.52
356 357 6.707599 ATTCGTCTGAACTAGTTAACTTGC 57.292 37.500 14.49 0.00 36.81 4.01
357 358 8.522178 AGAATTCGTCTGAACTAGTTAACTTG 57.478 34.615 14.49 14.45 36.81 3.16
358 359 8.979574 CAAGAATTCGTCTGAACTAGTTAACTT 58.020 33.333 14.49 0.00 36.40 2.66
359 360 8.358148 TCAAGAATTCGTCTGAACTAGTTAACT 58.642 33.333 13.68 13.68 36.40 2.24
360 361 8.516811 TCAAGAATTCGTCTGAACTAGTTAAC 57.483 34.615 8.42 6.65 36.40 2.01
361 362 8.975439 GTTCAAGAATTCGTCTGAACTAGTTAA 58.025 33.333 26.77 0.00 39.17 2.01
362 363 8.139350 TGTTCAAGAATTCGTCTGAACTAGTTA 58.861 33.333 30.05 18.46 40.86 2.24
363 364 6.984474 TGTTCAAGAATTCGTCTGAACTAGTT 59.016 34.615 30.05 8.13 40.86 2.24
364 365 6.513180 TGTTCAAGAATTCGTCTGAACTAGT 58.487 36.000 30.05 0.00 40.86 2.57
365 366 6.090088 CCTGTTCAAGAATTCGTCTGAACTAG 59.910 42.308 30.05 26.00 40.86 2.57
366 367 5.926542 CCTGTTCAAGAATTCGTCTGAACTA 59.073 40.000 30.05 22.07 40.86 2.24
367 368 4.752101 CCTGTTCAAGAATTCGTCTGAACT 59.248 41.667 30.05 4.01 40.86 3.01
368 369 4.083802 CCCTGTTCAAGAATTCGTCTGAAC 60.084 45.833 27.05 27.05 40.76 3.18
369 370 4.065088 CCCTGTTCAAGAATTCGTCTGAA 58.935 43.478 13.40 13.40 36.40 3.02
370 371 3.323691 TCCCTGTTCAAGAATTCGTCTGA 59.676 43.478 0.00 2.05 36.40 3.27
371 372 3.664107 TCCCTGTTCAAGAATTCGTCTG 58.336 45.455 0.00 0.00 36.40 3.51
372 373 4.559862 ATCCCTGTTCAAGAATTCGTCT 57.440 40.909 0.00 0.00 38.69 4.18
373 374 5.629079 AAATCCCTGTTCAAGAATTCGTC 57.371 39.130 0.00 0.00 0.00 4.20
374 375 7.519032 TTAAAATCCCTGTTCAAGAATTCGT 57.481 32.000 0.00 0.00 0.00 3.85
375 376 8.986477 AATTAAAATCCCTGTTCAAGAATTCG 57.014 30.769 0.00 0.00 0.00 3.34
407 408 5.012239 CAGGGAAAAAGAATGATCTGGTGA 58.988 41.667 0.00 0.00 35.59 4.02
412 413 5.183904 CGTTTCCAGGGAAAAAGAATGATCT 59.816 40.000 14.70 0.00 44.40 2.75
413 414 5.183140 TCGTTTCCAGGGAAAAAGAATGATC 59.817 40.000 14.70 0.00 44.40 2.92
420 421 1.953686 TGCTCGTTTCCAGGGAAAAAG 59.046 47.619 14.70 15.01 44.40 2.27
451 453 3.806949 TTCCTTGCCCTCACAGTTATT 57.193 42.857 0.00 0.00 0.00 1.40
466 468 4.576330 AGGATTTCGTCAAGGATTCCTT 57.424 40.909 12.37 12.37 45.88 3.36
519 552 2.366167 CTGGAGCCTGGAGGGAGA 59.634 66.667 0.00 0.00 37.23 3.71
532 565 2.063979 CCCTCCCGTACATGCTGGA 61.064 63.158 0.00 0.00 0.00 3.86
539 581 0.689745 CATTCCCTCCCTCCCGTACA 60.690 60.000 0.00 0.00 0.00 2.90
629 1877 4.942483 GGAGCATCTAGATGGAATGGAATG 59.058 45.833 29.43 6.58 39.16 2.67
630 1878 4.600547 TGGAGCATCTAGATGGAATGGAAT 59.399 41.667 29.43 0.10 39.16 3.01
631 1879 3.975982 TGGAGCATCTAGATGGAATGGAA 59.024 43.478 29.43 0.00 39.16 3.53
632 1880 3.590714 TGGAGCATCTAGATGGAATGGA 58.409 45.455 29.43 0.00 39.16 3.41
633 1881 4.262617 CATGGAGCATCTAGATGGAATGG 58.737 47.826 29.43 7.85 39.16 3.16
634 1882 3.690139 GCATGGAGCATCTAGATGGAATG 59.310 47.826 29.43 10.07 44.79 2.67
635 1883 3.952931 GCATGGAGCATCTAGATGGAAT 58.047 45.455 29.43 7.26 44.79 3.01
636 1884 3.413846 GCATGGAGCATCTAGATGGAA 57.586 47.619 29.43 0.00 44.79 3.53
655 1903 0.029300 AATGGAATGTATGCGCGTGC 59.971 50.000 15.48 15.48 43.20 5.34
656 1904 1.334059 GGAATGGAATGTATGCGCGTG 60.334 52.381 13.61 0.00 0.00 5.34
657 1905 0.944386 GGAATGGAATGTATGCGCGT 59.056 50.000 8.43 7.55 0.00 6.01
658 1906 0.943673 TGGAATGGAATGTATGCGCG 59.056 50.000 0.00 0.00 0.00 6.86
659 1907 2.816087 AGATGGAATGGAATGTATGCGC 59.184 45.455 0.00 0.00 0.00 6.09
660 1908 5.482006 TCTAGATGGAATGGAATGTATGCG 58.518 41.667 0.00 0.00 0.00 4.73
661 1909 6.183360 GCATCTAGATGGAATGGAATGTATGC 60.183 42.308 29.43 10.80 39.16 3.14
662 1910 7.110810 AGCATCTAGATGGAATGGAATGTATG 58.889 38.462 29.43 4.86 39.16 2.39
663 1911 7.268212 AGCATCTAGATGGAATGGAATGTAT 57.732 36.000 29.43 0.00 39.16 2.29
664 1912 6.296087 GGAGCATCTAGATGGAATGGAATGTA 60.296 42.308 29.43 0.00 39.16 2.29
665 1913 5.514484 GGAGCATCTAGATGGAATGGAATGT 60.514 44.000 29.43 0.00 39.16 2.71
666 1914 4.942483 GGAGCATCTAGATGGAATGGAATG 59.058 45.833 29.43 6.58 39.16 2.67
667 1915 4.600547 TGGAGCATCTAGATGGAATGGAAT 59.399 41.667 29.43 0.10 39.16 3.01
668 1916 3.975982 TGGAGCATCTAGATGGAATGGAA 59.024 43.478 29.43 0.00 39.16 3.53
669 1917 3.590714 TGGAGCATCTAGATGGAATGGA 58.409 45.455 29.43 0.00 39.16 3.41
670 1918 4.262617 CATGGAGCATCTAGATGGAATGG 58.737 47.826 29.43 7.85 39.16 3.16
671 1919 3.690139 GCATGGAGCATCTAGATGGAATG 59.310 47.826 29.43 10.07 44.79 2.67
672 1920 3.952931 GCATGGAGCATCTAGATGGAAT 58.047 45.455 29.43 7.26 44.79 3.01
673 1921 3.413846 GCATGGAGCATCTAGATGGAA 57.586 47.619 29.43 0.00 44.79 3.53
692 1940 0.029300 AATGGAATGTATGCGCGTGC 59.971 50.000 15.48 15.48 43.20 5.34
693 1941 1.334059 GGAATGGAATGTATGCGCGTG 60.334 52.381 13.61 0.00 0.00 5.34
694 1942 0.944386 GGAATGGAATGTATGCGCGT 59.056 50.000 8.43 7.55 0.00 6.01
695 1943 0.943673 TGGAATGGAATGTATGCGCG 59.056 50.000 0.00 0.00 0.00 6.86
696 1944 2.816087 AGATGGAATGGAATGTATGCGC 59.184 45.455 0.00 0.00 0.00 6.09
697 1945 5.482006 TCTAGATGGAATGGAATGTATGCG 58.518 41.667 0.00 0.00 0.00 4.73
698 1946 6.183360 GCATCTAGATGGAATGGAATGTATGC 60.183 42.308 29.43 10.80 39.16 3.14
699 1947 7.110810 AGCATCTAGATGGAATGGAATGTATG 58.889 38.462 29.43 4.86 39.16 2.39
700 1948 7.268212 AGCATCTAGATGGAATGGAATGTAT 57.732 36.000 29.43 0.00 39.16 2.29
701 1949 6.296087 GGAGCATCTAGATGGAATGGAATGTA 60.296 42.308 29.43 0.00 39.16 2.29
702 1950 5.514484 GGAGCATCTAGATGGAATGGAATGT 60.514 44.000 29.43 0.00 39.16 2.71
703 1951 4.942483 GGAGCATCTAGATGGAATGGAATG 59.058 45.833 29.43 6.58 39.16 2.67
704 1952 4.600547 TGGAGCATCTAGATGGAATGGAAT 59.399 41.667 29.43 0.10 39.16 3.01
705 1953 3.975982 TGGAGCATCTAGATGGAATGGAA 59.024 43.478 29.43 0.00 39.16 3.53
706 1954 3.590714 TGGAGCATCTAGATGGAATGGA 58.409 45.455 29.43 0.00 39.16 3.41
707 1955 4.262617 CATGGAGCATCTAGATGGAATGG 58.737 47.826 29.43 7.85 39.16 3.16
708 1956 3.690139 GCATGGAGCATCTAGATGGAATG 59.310 47.826 29.43 10.07 44.79 2.67
709 1957 3.952931 GCATGGAGCATCTAGATGGAAT 58.047 45.455 29.43 7.26 44.79 3.01
710 1958 3.413846 GCATGGAGCATCTAGATGGAA 57.586 47.619 29.43 0.00 44.79 3.53
729 1977 0.029300 AATGGAATGTATGCGCGTGC 59.971 50.000 15.48 15.48 43.20 5.34
730 1978 1.334059 GGAATGGAATGTATGCGCGTG 60.334 52.381 13.61 0.00 0.00 5.34
731 1979 0.944386 GGAATGGAATGTATGCGCGT 59.056 50.000 8.43 7.55 0.00 6.01
732 1980 0.943673 TGGAATGGAATGTATGCGCG 59.056 50.000 0.00 0.00 0.00 6.86
733 1981 2.816087 AGATGGAATGGAATGTATGCGC 59.184 45.455 0.00 0.00 0.00 6.09
734 1982 4.633126 CCTAGATGGAATGGAATGTATGCG 59.367 45.833 0.00 0.00 38.35 4.73
735 1983 5.809001 TCCTAGATGGAATGGAATGTATGC 58.191 41.667 0.00 0.00 42.94 3.14
736 1984 7.013823 ACTCCTAGATGGAATGGAATGTATG 57.986 40.000 0.00 0.00 45.63 2.39
737 1985 7.734865 TGTACTCCTAGATGGAATGGAATGTAT 59.265 37.037 0.00 0.00 45.63 2.29
738 1986 7.073208 TGTACTCCTAGATGGAATGGAATGTA 58.927 38.462 0.00 0.00 45.63 2.29
739 1987 5.905331 TGTACTCCTAGATGGAATGGAATGT 59.095 40.000 0.00 0.00 45.63 2.71
740 1988 6.425210 TGTACTCCTAGATGGAATGGAATG 57.575 41.667 0.00 0.00 45.63 2.67
741 1989 6.521427 GCATGTACTCCTAGATGGAATGGAAT 60.521 42.308 0.00 0.00 45.63 3.01
742 1990 5.221722 GCATGTACTCCTAGATGGAATGGAA 60.222 44.000 0.00 0.00 45.63 3.53
743 1991 4.284490 GCATGTACTCCTAGATGGAATGGA 59.716 45.833 0.00 0.00 45.63 3.41
744 1992 4.285517 AGCATGTACTCCTAGATGGAATGG 59.714 45.833 0.00 0.00 45.63 3.16
1050 2321 1.391933 CGATCACCGGGATGGACAGA 61.392 60.000 6.32 0.00 42.00 3.41
1215 2486 3.713902 CATGAGGACCATGTAGGCC 57.286 57.895 0.00 0.00 45.83 5.19
1273 2544 1.671054 CGGTGGTGGCAACGAAGAT 60.671 57.895 0.00 0.00 37.48 2.40
1386 2657 1.075896 GATCTCGTCCCACCTCCCT 60.076 63.158 0.00 0.00 0.00 4.20
1554 2825 0.909610 TCGGGCTGATCCAGAAGGTT 60.910 55.000 0.00 0.00 36.07 3.50
1624 2895 2.422231 CGCAGGAGTAGCAGAGCCT 61.422 63.158 0.00 0.00 0.00 4.58
1713 2984 1.909781 AAGGAGGGCAACGACGGTA 60.910 57.895 0.00 0.00 37.60 4.02
1885 3156 7.097192 GGACAAACTCATAGTCTCATACACAA 58.903 38.462 0.00 0.00 32.98 3.33
1921 3198 4.025979 CGCTTAGCTTTAGATTGGTAACGG 60.026 45.833 1.76 0.00 42.51 4.44
1923 3200 6.657836 TTCGCTTAGCTTTAGATTGGTAAC 57.342 37.500 1.76 0.00 0.00 2.50
1944 3221 2.190161 GGTTTTCGGCACACACTTTTC 58.810 47.619 0.00 0.00 0.00 2.29
1948 3225 0.745128 TTCGGTTTTCGGCACACACT 60.745 50.000 0.00 0.00 39.77 3.55
1949 3226 0.099082 TTTCGGTTTTCGGCACACAC 59.901 50.000 0.00 0.00 39.77 3.82
1950 3227 0.809385 TTTTCGGTTTTCGGCACACA 59.191 45.000 0.00 0.00 39.77 3.72
1951 3228 2.128367 ATTTTCGGTTTTCGGCACAC 57.872 45.000 0.00 0.00 39.77 3.82
1956 3236 6.295857 CAGCAATTTTATTTTCGGTTTTCGG 58.704 36.000 0.00 0.00 39.77 4.30
1972 3252 3.758554 GGATATCGGTATGCCAGCAATTT 59.241 43.478 0.00 0.00 34.09 1.82
1973 3253 3.009473 AGGATATCGGTATGCCAGCAATT 59.991 43.478 3.26 0.00 34.09 2.32
1974 3254 2.573462 AGGATATCGGTATGCCAGCAAT 59.427 45.455 3.26 0.00 34.09 3.56
1976 3256 1.644509 AGGATATCGGTATGCCAGCA 58.355 50.000 3.26 0.00 34.09 4.41
1977 3257 2.234908 AGAAGGATATCGGTATGCCAGC 59.765 50.000 3.26 0.00 34.09 4.85
1978 3258 4.543590 AAGAAGGATATCGGTATGCCAG 57.456 45.455 3.26 0.00 34.09 4.85
1980 3260 5.176592 GGTTAAGAAGGATATCGGTATGCC 58.823 45.833 3.26 0.19 29.60 4.40
1981 3261 5.790593 TGGTTAAGAAGGATATCGGTATGC 58.209 41.667 0.00 0.00 0.00 3.14
1982 3262 7.042335 GGATGGTTAAGAAGGATATCGGTATG 58.958 42.308 0.00 0.00 0.00 2.39
1983 3263 6.729100 TGGATGGTTAAGAAGGATATCGGTAT 59.271 38.462 0.00 0.00 0.00 2.73
1986 3266 5.483685 TGGATGGTTAAGAAGGATATCGG 57.516 43.478 0.00 0.00 0.00 4.18
1988 3268 6.486993 GTGGTTGGATGGTTAAGAAGGATATC 59.513 42.308 0.00 0.00 0.00 1.63
1989 3269 6.069088 TGTGGTTGGATGGTTAAGAAGGATAT 60.069 38.462 0.00 0.00 0.00 1.63
1990 3270 5.251932 TGTGGTTGGATGGTTAAGAAGGATA 59.748 40.000 0.00 0.00 0.00 2.59
1991 3271 4.044065 TGTGGTTGGATGGTTAAGAAGGAT 59.956 41.667 0.00 0.00 0.00 3.24
1993 3273 3.761897 TGTGGTTGGATGGTTAAGAAGG 58.238 45.455 0.00 0.00 0.00 3.46
1995 3275 4.798882 ACTTGTGGTTGGATGGTTAAGAA 58.201 39.130 0.00 0.00 0.00 2.52
1996 3276 4.447138 ACTTGTGGTTGGATGGTTAAGA 57.553 40.909 0.00 0.00 0.00 2.10
1997 3277 5.768164 ACTAACTTGTGGTTGGATGGTTAAG 59.232 40.000 0.00 0.00 38.45 1.85
2006 3547 9.541143 AATTTTTATGAACTAACTTGTGGTTGG 57.459 29.630 0.00 0.00 41.34 3.77
2053 3598 8.685257 ATTTTCTATTTTCATTCCCTTTCCCT 57.315 30.769 0.00 0.00 0.00 4.20
2079 3625 9.220767 GTATTGAGCGAAAAATCCCTCTTATAT 57.779 33.333 0.00 0.00 0.00 0.86
2084 3630 4.843728 TGTATTGAGCGAAAAATCCCTCT 58.156 39.130 0.00 0.00 0.00 3.69
2085 3631 5.560966 TTGTATTGAGCGAAAAATCCCTC 57.439 39.130 0.00 0.00 0.00 4.30
2086 3632 5.975693 TTTGTATTGAGCGAAAAATCCCT 57.024 34.783 0.00 0.00 0.00 4.20
2096 3642 7.621832 TCAATTTGAACTTTTGTATTGAGCG 57.378 32.000 0.00 0.00 32.13 5.03
2128 3675 1.326852 GACACTCAGCTGATGCGATTG 59.673 52.381 18.63 6.08 45.42 2.67
2139 3686 7.850982 CGTGGTTATTATAAAATGACACTCAGC 59.149 37.037 0.00 0.00 34.19 4.26
2165 3712 5.066117 GGGGTGACGATTTCCTAAGAAAATC 59.934 44.000 0.00 0.00 44.91 2.17
2170 3717 1.479323 CGGGGTGACGATTTCCTAAGA 59.521 52.381 0.00 0.00 35.47 2.10
2176 3723 0.248289 TTCCTCGGGGTGACGATTTC 59.752 55.000 0.00 0.00 42.62 2.17
2181 3728 0.034337 TTTTCTTCCTCGGGGTGACG 59.966 55.000 0.00 0.00 0.00 4.35
2192 3739 2.937149 GCCCTCTCGTACATTTTCTTCC 59.063 50.000 0.00 0.00 0.00 3.46
2220 3767 1.744320 GCAGGTTCTGGGGCGTTTTT 61.744 55.000 0.00 0.00 31.21 1.94
2233 3780 3.100671 CTCTAACTCTGTAGGGCAGGTT 58.899 50.000 0.00 0.00 45.08 3.50
2234 3781 2.312140 TCTCTAACTCTGTAGGGCAGGT 59.688 50.000 0.00 0.00 45.08 4.00
2250 3797 6.098409 GGGGTATCTGAGATTTGTGTTCTCTA 59.902 42.308 0.00 0.00 40.26 2.43
2254 3801 3.871594 CGGGGTATCTGAGATTTGTGTTC 59.128 47.826 0.00 0.00 0.00 3.18
2255 3802 3.517901 TCGGGGTATCTGAGATTTGTGTT 59.482 43.478 0.00 0.00 0.00 3.32
2267 3814 1.908793 CGGCCTCATCGGGGTATCT 60.909 63.158 0.00 0.00 0.00 1.98
2276 3823 1.621992 TGGATAGTCTCGGCCTCATC 58.378 55.000 0.00 0.00 0.00 2.92
2283 3830 3.612860 CGACAAAGTTTGGATAGTCTCGG 59.387 47.826 19.45 0.62 34.12 4.63
2291 3838 1.202879 TCTGGCCGACAAAGTTTGGAT 60.203 47.619 19.45 0.00 34.12 3.41
2302 3849 1.404315 CCAACTAGAGTTCTGGCCGAC 60.404 57.143 0.00 0.00 35.83 4.79
2307 3854 3.165875 TGTCCTCCAACTAGAGTTCTGG 58.834 50.000 0.00 0.00 35.83 3.86
2315 3862 6.071984 ACTGTCCTATATGTCCTCCAACTAG 58.928 44.000 0.00 0.00 0.00 2.57
2319 3866 5.394738 CCTACTGTCCTATATGTCCTCCAA 58.605 45.833 0.00 0.00 0.00 3.53
2328 3875 4.350225 TGTCTCGACCCTACTGTCCTATAT 59.650 45.833 0.00 0.00 31.35 0.86
2329 3876 3.713248 TGTCTCGACCCTACTGTCCTATA 59.287 47.826 0.00 0.00 31.35 1.31
2339 3887 1.621317 TGCATGTTTGTCTCGACCCTA 59.379 47.619 0.00 0.00 0.00 3.53
2341 3889 0.517316 GTGCATGTTTGTCTCGACCC 59.483 55.000 0.00 0.00 0.00 4.46
2343 3891 2.543848 TCTTGTGCATGTTTGTCTCGAC 59.456 45.455 0.00 0.00 0.00 4.20
2344 3892 2.832563 TCTTGTGCATGTTTGTCTCGA 58.167 42.857 0.00 0.00 0.00 4.04
2358 3906 2.050442 GGCCGGCGTTTTCTTGTG 60.050 61.111 22.54 0.00 0.00 3.33
2360 3908 2.561373 GAGGCCGGCGTTTTCTTG 59.439 61.111 24.48 0.00 0.00 3.02
2374 3922 3.601443 AACAGGTCTGATTCTTCGAGG 57.399 47.619 4.84 0.00 0.00 4.63
2397 3945 3.325425 TCCTCGTAATGTTGGAAGGTTGA 59.675 43.478 0.00 0.00 0.00 3.18
2400 3948 3.939066 CTTCCTCGTAATGTTGGAAGGT 58.061 45.455 11.52 0.00 46.96 3.50
2407 3955 3.738281 CGGAGATGCTTCCTCGTAATGTT 60.738 47.826 0.00 0.00 34.96 2.71
2434 3982 2.596851 GGTCTCTCTGCCTTGCCCA 61.597 63.158 0.00 0.00 0.00 5.36
2466 4014 1.750399 GCGAGGTGATGGTGCCATT 60.750 57.895 5.08 0.00 36.70 3.16
2467 4015 2.124570 GCGAGGTGATGGTGCCAT 60.125 61.111 2.95 2.95 39.69 4.40
2468 4016 4.408821 GGCGAGGTGATGGTGCCA 62.409 66.667 0.00 0.00 45.06 4.92
2479 4027 1.746615 CCATTCAGTGGTGGCGAGG 60.747 63.158 3.06 0.00 43.44 4.63
2490 4038 9.790344 ATAAATTTAGGATCTGTCTCCATTCAG 57.210 33.333 3.94 0.00 37.81 3.02
2529 4077 3.962718 CCCAGGAATTTAGTCCGGTAGTA 59.037 47.826 0.00 0.00 43.03 1.82
2534 4082 0.916809 ACCCCAGGAATTTAGTCCGG 59.083 55.000 0.00 0.00 43.03 5.14
2536 4084 1.214673 GGGACCCCAGGAATTTAGTCC 59.785 57.143 0.00 0.00 42.48 3.85
2558 4106 2.203351 CCCGGCAATAGAAGGGGC 60.203 66.667 0.00 0.00 40.18 5.80
2563 4111 2.684943 TCTATCACCCCGGCAATAGAA 58.315 47.619 0.00 0.00 29.96 2.10
2575 4124 2.373502 CCCCTTTCCTCCATCTATCACC 59.626 54.545 0.00 0.00 0.00 4.02
2577 4126 2.057922 GCCCCTTTCCTCCATCTATCA 58.942 52.381 0.00 0.00 0.00 2.15
2590 4139 0.540597 GAAAGACTGCAGGCCCCTTT 60.541 55.000 18.28 18.60 0.00 3.11
2592 4141 2.759795 GAAAGACTGCAGGCCCCT 59.240 61.111 18.28 0.00 0.00 4.79
2607 4156 1.009997 TCTACCCTTACTCCCGGGAA 58.990 55.000 26.68 7.95 43.44 3.97
2611 4160 2.731572 TCTGTTCTACCCTTACTCCCG 58.268 52.381 0.00 0.00 0.00 5.14
2616 4165 4.388378 AGCGAATCTGTTCTACCCTTAC 57.612 45.455 0.00 0.00 32.00 2.34
2618 4167 3.008049 ACAAGCGAATCTGTTCTACCCTT 59.992 43.478 0.00 0.00 32.00 3.95
2631 4180 0.179018 GCCATAGGGGACAAGCGAAT 60.179 55.000 0.00 0.00 40.01 3.34
2632 4181 1.223487 GCCATAGGGGACAAGCGAA 59.777 57.895 0.00 0.00 40.01 4.70
2633 4182 2.908015 GCCATAGGGGACAAGCGA 59.092 61.111 0.00 0.00 40.01 4.93
2644 4197 2.459555 ATCCCCAAACAAGGCCATAG 57.540 50.000 5.01 0.00 0.00 2.23
2648 4201 1.006639 TCCTAATCCCCAAACAAGGCC 59.993 52.381 0.00 0.00 0.00 5.19
2663 4216 4.100963 TGAATTGCTTCTATCCGCTCCTAA 59.899 41.667 0.00 0.00 32.29 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.