>input_sequence_68036
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------------------------------ATGGCGCTCAACTACATGGGCGCCGCGGCCATCAACGCGGTGGCGGCCCT
TCTGTCCATCCCGGTGATCGCGGCCGGCATCTGGCTCTCCACGCAGGCCGACAACGCCTGCGTCCAGATCCTCCAGTGGC
CGCTCATCGGCCTCGGCGTCGCCGTCCTCGCCATCGGCCTCGCGGGCTTCATCGGCGCCTTCTGGCGCCTGCCCTGGCTC
CTCCTGGCCTACATGGTCCTCATGCTCCTCCTCGTCGCCGCGCTCGCCTGCCTCGCCGTCTTCATCTTCGTTGCCACCAC
CGGCTCCAACGTCCGCCCCGTGCCCAGCCGCGCCTTCCTCGAGTACGACCTTGCCGACTACTCCGGCTGGCTGCGCCGCC
GCGTCGCCGACGAGCCAGGGAGGTGGGACGAGATCAGGACGTGCCTGGCCGCCACCGCGCCCGTCTGCTCCGAGCTCAAC
CAGACGTACGCCGCGCCGCAGGACTTCTTCGCCGCCTGGCTCACCCCGATGCAGTCCGGCTGTTGCAAGCCGCCGACGAG
GTGCGGCTACACCTTCGTCAGCGCAACCTTCTGGATCAGCCCGATCGACGGCGCTGCCGACCCCGACTGCGCTGCCTGGA
GCAACGACCAGGACAGGCTCTGCTACTCCTGCGACTCCTGCAAGGCCGGCCTACTGCAGAATCTCCGCAGGGAGTGGCGC
CGCGCGGACGTCGTCCTCGCCGTTACCGTCGTTGCCCTCCTTGCAGTCTACGCCATGGGCTGCTACGCGTTCCGCACCGC
CAGGACGGACGAGCTCTTCCGCCGCTACCGGCAGGGCTACACGTAA----------------------------------
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>chr4B_1_TraesCS4B01G272900
CCATTGGTGGCGGCCTTTTATGGTGCACCAACTCATTTCGAACAAACCAAATCCTCCAAAACAGCATCATCACAAGAGCT
CTGCCCTCCTCCTTTGTTTCAGCTAGAAGATGGATGAACCAATCAGGCCCCACATGTTTTAGCGTGGTCCTGGGGGGAAG
GTTCCACACCTTTGCCATCAATTTCCATAGGATCACTGCATGATTGCAGGAGCAGAAGACATGGAACGAATCCTCATCTT
CTCTACGAGCAGGGGACTAATAGGCGAATCGGCAAGTTAATCGGTCATAATCAAGTTAGTCAGTCATTTAATCAATTAAT
TGGTTACTCGGTAATCCTATGAGTAGGGATTAATCGGCAAGTTAACTAGTTCAGACGAATTCTTGAACAGGGATTTTAAT
TTATAAATCACCAGATCATTCTTTTT-CCCTGGAAACGAGCAAACGGGGCGAAATAACTGTGAGGGCAAGGAATCCTTGA
CGAAATCCTTAATAGGCCACGGCCCGCTG-------------------------------GAAGAGGCACCTCTCCCTCC
AGGCTCCAGC---------AT-------GTACGGGAGGGAG---------------------------------------
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----------------------------------------GGAATGAACTGCCAATGAAGCAAAGAATACCCAGCTATGA
AGTGCAGCATGCATATATGCTCCATGCACGCGCATACATTCCATTCCATCTAGATGCTCCATGCACGCGCATACATTCCA
TTCCATCTAGATGCTCCATGCACGCGCATACATTCCATTCCATCTAGATGCTCCATGCACGCGCATACATTCCATTCCAT
CTAGGAGT--ACATGCTATCTGATGCATGGTG--CGCTGATATCCTTCTTTTGTT----ACTTTACTTAAAGTGAA--AA
AAGCAGCAGAAAGAAAATTAATTTAAGGCATAGTCGTTGGAAGGAAGGAAGGAAGGATTTGCTACCACCGGCACCAGCAC
GTATCGCATCACAGCTTTGGCCGGCCGGCGGTGCAAGAGCTAAGCCCCATATAGCGAGATCAAG------CGAGAGGCCG
GCTAG-------GTCGTCTGCTCCGGCGAAATGGCGCTCAACTACATGGGCGCCGCGGCCATCAACGCGGTGGCGGCCCT
TCTGTCCATCCCGGTGATCGCGGCCGGCATCTGGCTCTCCACGCAGGCCGACAACGCCTGCGTCCAGATCCTCCAGTGGC
CGCTCATCGGCCTCGGCGTCGCCGTCCTCGCCATCGGCCTCGCGGGCTTCATCGGCGCCTTCTGGCGCCTGCCCTGGCTC
CTCCTGGCCTACATGGTCCTCATGCTCCTCCTCGTCGCCGCGCTCGCCTGCCTCGCCGTCTTCATCTTCGTTGCCACCAC
CGGCTCCAACGTCCGCCCCGTGCCCAGCCGCGCCTTCCTCGAGTACGACCTTGCCGACTACTCCGGCTGGCTGCGCCGCC
GCGTCGCCGACGAGCCAGGGAGGTGGGACGAGATCAGGACGTGCCTGGCCGCCACCGCGCCCGTCTGCTCCGAGCTCAAC
CAGACGTACGCCGCGCCGCAGGACTTCTTCGCCGCCTGGCTCACCCCGATGCAGTCCGGCTGTTGCAAGCCGCCGACGAG
GTGCGGCTACACCTTCGTCAGCGCAACCTTCTGGATCAGCCCGATCGACGGCGCTGCCGACCCCGACTGCGCTGCCTGGA
GCAACGACCAGGACAGGCTCTGCTACTCCTGCGACTCCTGCAAGGCCGGCCTACTGCAGAATCTCCGCAGGGAGTGGCGC
CGCGCGGACGTCGTCCTCGCCGTTACCGTCGTTGCCCTCCTTGCAGTCTACGCCATGGGCTGCTACGCGTTCCGCACCGC
CAGGACGGACGAGCTCTTCCGCCGCTACCGGCAGGGCTACACGTAATTTAATTTATTTCTGGATCCAGCGTGTCACATTT
CCTGAAAATTTACATACATTTGTAAGATGCACCCATTGTGTATGAGACTATGAGTTTGTCCGGCAG------AGAAACCG
TTACCAATCTAAAGCTAAGCGAAAAGTG---TGTGCCGAAAACCGAAAATAAAATTGCTGGCATACCGATATCCTTCT--
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-------------------TAACCATCCAACCACAAGTTAGTTCATAAAAA----TTACAACATGTTTGACTACTCTAGG
GAAAGGGAATGAAAA-TAGAAAATATATAAGAGGGATTTTTCGCTCAATACAAAAGTTCAAATTGAAGCA-CTACAATCG
CATCAGCTGAGTGTCATTTTATAATAACCACGATTTTCTTAGGAAATCGTCACCCCGAGGAAGAAAATGTACGAGAGGGC
CTCTAAAAAAACGCCCCAGAACCTGCCCTACAGAGTTAGAGAACACAAATCTCAGATACCCCGATGAGGCCGAGACTATC
CAAACTTTGTCGGCCAGAACTCTAGTTGGAGGACATA-TAGGACAGTAGGGTCGAGACAAACATGCACAAGAAAACGCCG
GCCTCGAAGAATCAGACCTGTTTCTCAACCTTCCAACATTACGAGGAAGCATCTCCGAATCTGGGCAAGGCAGAGAGACC
TTATTCCATGCCCAATGGCACCATCACCTCGCCACCACTGAATGGAGACAGATCCTAAATTTATTTCTAACCCTACTACT
ACCGGACTAAATTCCTGGGGTCCCCGCCCCTTC-TATTGCCGGGGTGATAGATGGAGGAAAGGGGCCTGCAGTCTTTCCC
GGGAGTAAGGGTAGAACAGATTC----GCTTGTCCCCTATGGCCTTGTTTGGGGATTAGGAGCGGATAGAAGCAATTCAC
AATTATATGCACCTTAGTTTACCAAAAGGGTCTGGTTAGATCTTAGTCAACTAATATTTAATCAAATCTTAGTCAAATGA
CATATACATATAAAAATAAGAGAGAGAAATAAAAAATAAAATGCACGG
>chr4A_394
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-------------------------------------------------------------------------TTTTAAT
TTATAAACCACTGAATCATTTTTGCCCCCCTGGAAACGAGCAAACGGGGCGAGATAACTGTGAGGGCGAGGAATCCT---
---------TAATAGGCCGCGGCGCGCAGGCATCCACTCGAGCGCCAGCGCTGGCGCTGCGAAGAGACACCCCTCCCTCC
AGGCCCCAGC---------AGGATGGACGTAC----GGGAG---------------------------------------
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----------------------------------------GGAATGAACTGCCAATGAAGCAAAGAATACCCAGCTATGA
AGTGCAGCGTGCATATATGCTCCATGCACGCGCATA--------------------------------------------
------------------------------------------------------------------------CATTCCAT
CTAGGAGT--ACAAGCTATCTGATGCATGGTG--CGCTGCCATCCTCCTTTTTTTTGTTACTTTTACTTAAAGCGAAAAA
AAGCAGCAGAAAGAAATTTAATCTAAGCCATAGTCGTT----GGAAGGAAGGAAGGACTTGCTACCACCGGCACCGGCAC
GTATCGCATCACAGCTTTGGCCGGCCGGCGGTGCAAGAGCTAAGCCCCATATAGCGAGATCAGG------CGAGAGGCCG
GCTAGCTAGGTCGTCGTCTGCCCCGGCGAAATGGCGCTCAACTACATGGGCGCCGCGGCCATCAACGCGGTGGCGGCCCT
GCTGTCCATCCCGGTGATCGCGGCCGGCATCTGGCTCTCCACGCAGGCCGACAACGCCTGCGTCCAGATCCTCCAGTGGC
CGCTCATCGGCCTCGGCGTCGCCGTCCTCGCCGTCGGCCTCGCGGGCTTCGTCGGCGCCTTCTGGCGCCTGCCCTGGCTC
CTCCTCGCCTACATGGTCCTCATGCTGCTCCTCGTCGCCGCGCTCGCCTGCCTCGCCGTCTTCGTCTTCGTCGCCACCAC
CGGCACCTCCGGCCGCCCCGTGCCCAGCCGCGCCTTCCTCGAGTACGACCTCGCCGACTACTCCGGCTGGCTGCGCCGCC
GCGTCGCCGACGAGCCGGGGAGGTGGGACGAGATCAAGACGTGCCTGGCCGCCACCGCGCCCGTCTGCTCCGAGCTCAAC
CAGACGTACGCCGCGCCGCAGGACTTCTTCGCCGCCTGGCTCACCCCGATGCAGTCCGGCTGCTGCAAGCCGCCGACGAG
GTGCGGCTACACCTTCGTCAGCGCGACCAACTGGATCAGCCCGATCGACGGCGCCGCCGACCCCGACTGCGCCGCCTGGA
GCAACGACCAGGACCGGCTCTGCTACTCCTGCGACTCATGCAAGGCCGGGCTGCTGCAGAACCTCCGCCGGGAGTGGCGC
CGCGCGGACGTCGTCCTCGCCGTGACCGTCGTCGCCCTCCTTGCGGTCTACGCCATGGGCTGCTACGCGTTCCGCACCGC
CAGGACGGACGAGCTCTTCCGCCGCTACCGGCAGGGCTACACGTAATTTAATTTATTTCTGGATCCAGCGTGTCACATTT
CCTGAAAATTTACATACATTTGTAAGATGCA-------TGTATGAGACTATGAGTTTGTC--------------------
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>chr4D_398
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-----------------------------------------------------------------------------AAT
TTATAAACCACCGAATTACCTTTTTT-CCCTGGAAACGAGCAAACGGGGCGAGATAACTGTGAGAGCGAGGAAACCT---
---------CAATAGGCCGTGGCCCGCTG-------------------------------GAAGTGGCACCCCTCCCTCC
AGCCAGGCTCCAGCAGCATAGGATGGACGTACGGGAGGGAATGAACGAGAGCTCCTGTACGCCGCTAGCTGCGGCAAAGT
GCCCGCCCTTCGCACAGGAGGGCTAGCCTGGGCCGGCCCATTTACAGTTGCACGCGGCGGCATCCCGAGATGAAAGATCG
CAAAAAAGAAAACCGATAGCGCTAAGCTGAAACTCGAACCGGCGACCTCGTACTAATTGACCCGGCGTGCAAACCACTCC
CACATAGACACTCCCATGTTCAATTCGCAGCGCAACATTTAAAGACACATACGGCAGCGACAAAACTGCAACATTAATTT
GCAAAAAATCCCAAAAACTACAGTCCATGTATTGGGTCGAACCGAGGACCTACAACTGAATTTTCCGAAATTACGATATT
TTCTTCAAAATAAAAACATTTTCTGAATTTTCGAACAAATTTTGTAAAACATAAACATTTTCATGATGTGAACAAATTTG
GAAAGAGGGAACATTTTTTGAATTTTTGAACAAAAAATAAAAATGTTTACACTTTTTCAAACTTCAAGAACATTTTTTGA
AACTCCTGAAAAAAAATGAAAACATGAACAATTTTTAAAATTTGTGAACATTTTTTTAAAACAGGAACATTTTTTGAACA
TTGTCAAAAAATTCAAAAAGAAACATTCAAACATTTTTTTTGTTAAACAAGAACAATTTTTTAAAATTCCAGAACAATTT
TCGAAGATTTCAAAAATGCGAACAATTTTTTGAAAAAGAAATTTTTTGAATTTGTGAACAATTTTTGAGGATTTCAAAAA
TGCGATTTTTTTTAAAAAGGAACATTGTTGAATTTATGAACATTTTTTTAAAACATGAACATTTTTTGAAATTTTGATCT
TTTTTAAAAACAGGAACATTTTTTGAAATTTTCAACAATTTAGAAAGATGTTTTTTTAAAATAAACTTGAAAAATAAAAT
AAACGAAAAAGCAAAAAAAAGTAGAAAACAGAAAAAAAAAGAAACATAAAAGCAGAAAAAGAAGAAAAGATAAAACGAAA
AACAAAAAAACCCAAGAAGAAACAAGAAATCTGATCAAAAAGAAAAAAAGGTCCAGGGAACCTTCTAGAAGGTTCCCGAA
ACCGGGATACTGTAGCACGGTAATCCATCAGTAGTGGGCCGGCCCATGTCGCTCGCTCGCTCCTCTTCCCTGTGCGTTCC
TTCGACAATTTGCGGCAATAAGCGTCAAATAGGATATTCCGGAATGAACTGCCAATGAAGCAAAGAATACCCAGCTATGA
AGTGCAGCATGCATATATGCTCCATGCACGCGCATA--------------------------------------------
------------------------------------------------------------------------CATTCCAT
CTAGGAGTACACATGCTATCTGATGCATGGTGTGCGCTGCTATCCTTTTTTTGTTTGTTACTTTACCTAAAGTGAG--AA
AAGCAGCAGAAAGAAAATTAATTTAAGGCATAGTCGTTGGAAGGAAGGAAGGAAGGATTTGCTACCACCGGCACCAGCAC
GTATCGCATCACAGCTTTGGCCGGCAGGCGGTGCAAGAGCTAAGCCCCATATAGCGAGATCAGAATCAGACGAGAGGCCG
GCTAG-------GTCGTCTGCTCCGGCGAAATGGCGCTCAACTACATGGGCGCCGCGGCCATCAACGCGGTGGCGGCCCT
GCTGTCCATCCCGGTGATCGCGGCCGGCATCTGGCTCTCCACGCAGGCCGACAACGCCTGCGTCCAGATCCTCCAGTGGC
CACTCGTCGGCCTCGGCGTCGCCGTCCTCGCCGTCGGCCTCGCGGGCTTCATCGGCGCCTTCTGGCGCCTGCCCTGGCTC
CTCCTCGCCTACATGGTCCTCATGCTCCTCCTCGTCGCCGCGCTCGCCTGCCTCGCCGTCTTCGTCTTCGTCGCCACCAC
CGGCACCTCCGGCCGCCCCGTGCCCAGCCGCGCCTTTCTAGAGTACGACCTGGCCGACTACTCCGGCTGGCTGCGCCGCC
GCGTCGCCGACGAGCCGGGGAGGTGGGACGAGATCAAGACGTGCCTGGCCGCCACCGCGCCCGTCTGCTCCGAGCTCAAC
CAGACGTACGCCGCGCCGCAGGACTTCTTCGCCGCCTGGCTCTCCCCGATGCAGTCCGGCTGCTGCAAGCCGCCGACGAG
GTGCGGCTACACCTTCGTCAGCGCGACCAACTGGATCAGCCCGATCGACGGCGCCGCCGACCCCGACTGCGCTGCCTGGA
GCAACGACCAGGACCGGCTCTGCTACTCCTGCGACTCCTGCAAGGCCGGCCTACTGCAGAATCTCCGCCGGGAGTGGCGC
CGCGCGGACGTCGTCCTCGCCGTCACCGTCGTTGCCCTCCTTGCAGTCTACGCCATGGGCTGCTACGCGTTCCGCACCGC
CAGGACGGACGAGCTCTTCCGCCGCTACCGGCAGGGCTACACGTGATTTAATTTATTTCTGGATCCAGCGTGTCACATTT
CCTGAAAATTTACATACATTTGTAAGATGCACCCAATGTGTATGAGACTATGAGTTTGTCCGGCAGATTTTCAGAAATCA
TTACCAATCTAAAGCTAAGCCAAAGTGTATCTGTGTCGAAAACCGAAAATAGTGTGCTTTTTTTAACACAGTACAATTAA
AGTTGCTCACATATACGAGTATGCACTCACGCCCCTGAACGCACGCGCACCCACACACTACCCCTATGAGCATCTCCGAG
AGACTGAGTTGGAATAGCGTCTTGAGATTCTACACCATAGACGCCTCGCAGTCAACGATAACGTCTTCTCCAACTGAACA
AACATCGCCAAAAGTCTGAAATAAATCCAGAAATAACGCGAGCACCAATGTCAAATCTAAGACTTGAACCCTGTTGGGCT
AGGAATACAACTGTCCTTCTAACCATTCAACCACAGGTTGGTTCACAAAAAAAAATTACAACATGTTTGACTACTCTGGG
GAAAGGGAATGAAAAATAGAAAATTTATAGTGGGGATTTTTTGCTCAATACAAAAGTTCAAATTGAAGCATCTATAATCG
CATCAACTGAGTTTCATTTTACAATAACCACAATTTCCTTAGCAAATTGTCACCCCGAAGAAGAAAATGTATGAGAGGGC
CTCT---AAAACGCCCCAGGTCCTGCCCTACAGAGTCAGATGACACAAATCTCGGATACCCCAATGAGGTCGAGACTGTC
CAAACTTTATCGGTCAGAACTGTAGCTGGAGGACCAAGTAGGACAGCAAGACCGAGACAAACATGGAAAAGAAAACGCCG
GACTCGGAGAATCAGACCTGTTTCACAGCCTTCCGACATTACGAGGAAGCATCTCCGAATCCGGGCAAGGCAGAGAGACC
TTATTCCACGCCCGGCGGCACCATCATCTCGCTGCCAGTGAATGGAGACATATCCTAAATTTATTTCTAACCCTACCACT
ATCAGGATAAATCCCTGGGGTCCCCACCCCCTCCTATTGCCGGAGCGATAGATGGAGGGAGGGGGCCTGCAGTCTCTCCG
GGGAAT-AGGGTAGAACAGCCGCCGCTGCTTGTCCCATATCGCCTTGTTTGGGGAGTAGGAGCGGATAGAAGCGATTCAC
AATTATATGCACCT-AGTTTACCAAAAGGGTGTGGTTAGATTCCAGTGGACTGAGATTTAATCAAATCTCAGTTAAGTGA
CATA-ACGTATAAAAAGAAGAGA-------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
-------S----SS------S-------------------------------S--------------S---------SSS
SSSSSSSSS---------S----------------------------------------------------S--------
----S---------------S-----------------------------------------------------------
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------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
---------------------------------------S--------------------------S-------------
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--------------------------------------------------------------S-----------------
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S-------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
-----S---------------------------------------------------------S-------S--------
----S--SS--S---------------------------------------S----------------------------
----------------S-------------------S-------------------------------------------
--------------------------------------------------------------S-----------------
------------------------S---SS------------------------S-------------------------
--------------S-----------------------------------------------------S-----------
-----------------------S--------------------------------------------------------
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-----------------------------------S-----------------------------------------S-S
--------------------S---SSSS-------S---------------SSS-SSS-SSSS--S-SSSS-S-SSS---
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--------------------------S--------S---S-----S-------------------------------S--
------------------------S----SSS---------S--------------------------------S-----
-----S------S--------S---------S----S-----S----S----------S------------S--------
----SSS------------SS---------------S---SS-----------S--------S------S-------S--
--------S----S-------S---S--------SS----------S-S-SS-------------S-S------------
-S----S-----------------S--S------S--------------------------S------------------
--------S----SSS----------S-----SS---S------------S-------------------------S---
-S-S-SS-----S------------S----S------------S-S------------S-S--------------S---S
----S-S------------SSS--------------S---S--------------S-----------------S------
--------------S----------------S---------SSS---SS---S-S--------------S---S--S---
----S--S--------S------SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1885
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-------------------------GCACGCGCATACATTCCATT-----------------------------------
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>reverse_3728
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-----------------------------------------------CGTCACCCCGAGGAAGAAAA-------------
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