Multiple sequence alignment - TraesCS4B01G259900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G259900 chr4B 100.000 2264 0 0 1 2264 526956857 526959120 0.000000e+00 4181
1 TraesCS4B01G259900 chr4A 91.139 2212 135 33 13 2207 37829788 37831955 0.000000e+00 2942
2 TraesCS4B01G259900 chr4D 92.344 1045 63 11 1227 2264 428560945 428559911 0.000000e+00 1471
3 TraesCS4B01G259900 chr4D 94.785 441 20 3 800 1238 428562670 428562231 0.000000e+00 684
4 TraesCS4B01G259900 chr4D 85.855 608 63 17 207 803 428563332 428562737 1.910000e-175 625
5 TraesCS4B01G259900 chr4D 89.881 168 9 2 4 171 428563493 428563334 2.280000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G259900 chr4B 526956857 526959120 2263 False 4181.00 4181 100.00000 1 2264 1 chr4B.!!$F1 2263
1 TraesCS4B01G259900 chr4A 37829788 37831955 2167 False 2942.00 2942 91.13900 13 2207 1 chr4A.!!$F1 2194
2 TraesCS4B01G259900 chr4D 428559911 428563493 3582 True 747.25 1471 90.71625 4 2264 4 chr4D.!!$R1 2260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.251916 TCGAGTAGCCCCCAATTGTG 59.748 55.0 4.43 0.0 0.0 3.33 F
102 103 0.480690 TAGCCCCCAATTGTGTGTGT 59.519 50.0 4.43 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1017 1115 0.173481 CCTCATCCTCGTCGCAGAAA 59.827 55.0 0.0 0.0 39.69 2.52 R
1681 3081 0.391927 TTCGCATACCACGGGAAAGG 60.392 55.0 0.0 0.0 32.98 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.316390 GTCTTTGGATGGGTCAGTATGTAAAG 59.684 42.308 0.00 0.00 37.40 1.85
86 87 2.486951 TCCGTGCTAATTCGAGTAGC 57.513 50.000 18.49 18.49 43.57 3.58
96 97 0.988832 TTCGAGTAGCCCCCAATTGT 59.011 50.000 4.43 0.00 0.00 2.71
97 98 0.251916 TCGAGTAGCCCCCAATTGTG 59.748 55.000 4.43 0.00 0.00 3.33
99 100 1.463674 GAGTAGCCCCCAATTGTGTG 58.536 55.000 4.43 0.00 0.00 3.82
100 101 0.777446 AGTAGCCCCCAATTGTGTGT 59.223 50.000 4.43 0.00 0.00 3.72
101 102 0.887933 GTAGCCCCCAATTGTGTGTG 59.112 55.000 4.43 0.00 0.00 3.82
102 103 0.480690 TAGCCCCCAATTGTGTGTGT 59.519 50.000 4.43 0.00 0.00 3.72
126 127 2.163412 GTGTGTGTGTGTGTGTGGAATT 59.837 45.455 0.00 0.00 0.00 2.17
130 131 3.128415 TGTGTGTGTGTGTGGAATTTGAG 59.872 43.478 0.00 0.00 0.00 3.02
174 175 2.169352 CCAGGTGTCTCCCTTGTATCTG 59.831 54.545 0.00 0.00 36.75 2.90
195 196 6.418101 TCTGGAGGTTGATTATTTCTTCAGG 58.582 40.000 0.00 0.00 0.00 3.86
198 199 6.215431 TGGAGGTTGATTATTTCTTCAGGAGA 59.785 38.462 0.00 0.00 0.00 3.71
199 200 7.092264 TGGAGGTTGATTATTTCTTCAGGAGAT 60.092 37.037 0.00 0.00 33.49 2.75
200 201 7.228308 GGAGGTTGATTATTTCTTCAGGAGATG 59.772 40.741 0.00 0.00 33.49 2.90
201 202 7.637511 AGGTTGATTATTTCTTCAGGAGATGT 58.362 34.615 0.00 0.00 33.49 3.06
202 203 8.772250 AGGTTGATTATTTCTTCAGGAGATGTA 58.228 33.333 0.00 0.00 33.49 2.29
203 204 9.050601 GGTTGATTATTTCTTCAGGAGATGTAG 57.949 37.037 0.00 0.00 33.49 2.74
204 205 9.823647 GTTGATTATTTCTTCAGGAGATGTAGA 57.176 33.333 0.00 0.00 33.89 2.59
231 232 4.409901 AGAAAATAGAAAATGCCATGGGGG 59.590 41.667 15.13 0.00 40.85 5.40
299 300 2.223203 GGAACTGCTGCAGAATGATTCG 60.223 50.000 34.28 7.42 39.69 3.34
300 301 1.376543 ACTGCTGCAGAATGATTCGG 58.623 50.000 34.28 5.14 39.69 4.30
305 306 1.938577 CTGCAGAATGATTCGGGAGTG 59.061 52.381 16.21 3.36 39.69 3.51
309 311 3.452474 CAGAATGATTCGGGAGTGACTC 58.548 50.000 3.47 3.47 39.69 3.36
346 348 4.460382 TGATTGGTGATTCTTCCTTGCTTC 59.540 41.667 0.00 0.00 0.00 3.86
415 418 4.887071 TCTGTGTTTAACATTGCCAGACTT 59.113 37.500 10.69 0.00 38.39 3.01
416 419 5.359576 TCTGTGTTTAACATTGCCAGACTTT 59.640 36.000 10.69 0.00 38.39 2.66
481 485 9.823647 CATTACTGTTTATCTATGTTCCTCTGT 57.176 33.333 0.00 0.00 0.00 3.41
628 654 5.496133 TTCTTAGTACTCCACTATGTCGC 57.504 43.478 0.00 0.00 39.51 5.19
673 699 9.918630 ATGGACAGAAGAATTAACTCAATTTTG 57.081 29.630 0.00 0.00 36.96 2.44
767 793 4.530710 AAATACTGCTGGTTAGACGTGA 57.469 40.909 0.00 0.00 0.00 4.35
780 806 6.315642 TGGTTAGACGTGAAATTTGTGTGTAA 59.684 34.615 0.00 0.00 0.00 2.41
842 938 3.976942 CAGAAGCACATAGTTGTTGTTGC 59.023 43.478 0.00 0.00 32.34 4.17
881 978 9.702494 TGTCATCAAATATGCATTTTTGTTACA 57.298 25.926 29.64 26.75 35.01 2.41
890 987 6.012658 TGCATTTTTGTTACATCTGTCTCC 57.987 37.500 0.00 0.00 0.00 3.71
899 996 2.106566 ACATCTGTCTCCGAAGCATCT 58.893 47.619 0.00 0.00 0.00 2.90
939 1036 4.341366 TGTCTTCTGCTGAGACATTTCA 57.659 40.909 16.26 1.51 37.61 2.69
1014 1112 2.849880 TTAAGATGGCAATCAAGCGC 57.150 45.000 3.34 0.00 35.03 5.92
1017 1115 2.751436 ATGGCAATCAAGCGCGGT 60.751 55.556 4.23 4.23 34.64 5.68
1021 1119 1.210155 GCAATCAAGCGCGGTTTCT 59.790 52.632 22.65 8.62 0.00 2.52
1047 1145 1.144936 GGATGAGGAGGAAGTGGCG 59.855 63.158 0.00 0.00 0.00 5.69
1079 1177 1.985895 CCCAGTGGACTTAAAGGAGGT 59.014 52.381 11.95 0.00 0.00 3.85
1108 1206 3.250762 CGCAGACAAGATCACAAAGGAAA 59.749 43.478 0.00 0.00 0.00 3.13
1131 1229 2.418368 TGGCTAAGGTTATGGTGCAG 57.582 50.000 0.00 0.00 0.00 4.41
1139 1237 1.282157 GGTTATGGTGCAGAGGAAGGT 59.718 52.381 0.00 0.00 0.00 3.50
1198 1296 2.935481 CCCCTGCCCTGGAGAACA 60.935 66.667 0.00 0.00 0.00 3.18
1273 2668 5.013079 TGGGCCATCTACTAAATCTGGTATG 59.987 44.000 0.00 0.00 0.00 2.39
1406 2801 5.508994 GGTTTGGATGTTACCTGGTTTCAAG 60.509 44.000 3.84 0.00 0.00 3.02
1407 2802 4.447138 TGGATGTTACCTGGTTTCAAGT 57.553 40.909 3.84 0.00 0.00 3.16
1414 2811 6.833041 TGTTACCTGGTTTCAAGTCTTGATA 58.167 36.000 15.95 8.78 39.84 2.15
1421 2818 8.025445 CCTGGTTTCAAGTCTTGATATCTTTTG 58.975 37.037 15.95 4.77 39.84 2.44
1480 2877 6.657966 TGATGTCTGATCTCTTTTGCATTCTT 59.342 34.615 0.00 0.00 0.00 2.52
1482 2879 5.999600 TGTCTGATCTCTTTTGCATTCTTCA 59.000 36.000 0.00 0.00 0.00 3.02
1657 3057 1.251251 CTTGAAACTGGCTGAAGGGG 58.749 55.000 0.00 0.00 0.00 4.79
1681 3081 2.755103 CAGCAAATGGTAAGGGGAGAAC 59.245 50.000 0.00 0.00 0.00 3.01
1747 3147 3.005684 TGCTTTACCTTGTTCTGCAATGG 59.994 43.478 0.00 0.00 36.36 3.16
1759 3159 2.091720 TCTGCAATGGGGAAGCATGTAT 60.092 45.455 0.00 0.00 37.68 2.29
1760 3160 2.033372 TGCAATGGGGAAGCATGTATG 58.967 47.619 0.00 0.00 32.55 2.39
1808 3210 4.856801 GTGGTGGCGGCGGATGAT 62.857 66.667 9.78 0.00 0.00 2.45
1809 3211 4.108299 TGGTGGCGGCGGATGATT 62.108 61.111 9.78 0.00 0.00 2.57
1810 3212 2.828549 GGTGGCGGCGGATGATTT 60.829 61.111 9.78 0.00 0.00 2.17
1811 3213 2.715624 GTGGCGGCGGATGATTTC 59.284 61.111 9.78 0.00 0.00 2.17
1812 3214 2.894879 TGGCGGCGGATGATTTCG 60.895 61.111 9.78 0.00 0.00 3.46
1907 3309 4.401022 TGCCTCTCTTGTGATGTCATTTT 58.599 39.130 0.00 0.00 0.00 1.82
1925 3327 9.581099 TGTCATTTTCTTGTTCTTTTAACCTTC 57.419 29.630 0.00 0.00 0.00 3.46
1974 3377 8.615878 TCATCTTAGAAATGTTCTTTTTCCGA 57.384 30.769 0.00 0.00 41.14 4.55
1980 3383 7.290110 AGAAATGTTCTTTTTCCGAGGAAAT 57.710 32.000 16.97 0.29 36.59 2.17
2037 3440 3.507622 ACAAAAACAGCAGCCTCCTAATC 59.492 43.478 0.00 0.00 0.00 1.75
2038 3441 3.728385 AAAACAGCAGCCTCCTAATCT 57.272 42.857 0.00 0.00 0.00 2.40
2044 3449 5.189180 ACAGCAGCCTCCTAATCTTTTTAG 58.811 41.667 0.00 0.00 0.00 1.85
2062 3467 5.878261 TTTAGTCTCTTGAACGAACGAAC 57.122 39.130 0.14 0.00 0.00 3.95
2068 3473 3.117794 TCTTGAACGAACGAACGAACAT 58.882 40.909 11.97 0.00 37.03 2.71
2072 3477 0.876777 ACGAACGAACGAACATGCCA 60.877 50.000 11.97 0.00 37.03 4.92
2078 3483 2.809119 ACGAACGAACATGCCATTTGTA 59.191 40.909 0.14 0.00 0.00 2.41
2124 3535 0.603569 AGGCCGTTCGCTAGATATGG 59.396 55.000 0.00 0.00 37.74 2.74
2161 3572 5.426833 AGAGACCATAAACAACAGCTCCTAT 59.573 40.000 0.00 0.00 0.00 2.57
2162 3573 5.431765 AGACCATAAACAACAGCTCCTATG 58.568 41.667 0.00 0.00 0.00 2.23
2163 3574 3.947834 ACCATAAACAACAGCTCCTATGC 59.052 43.478 0.00 0.00 0.00 3.14
2165 3576 2.584835 AAACAACAGCTCCTATGCCA 57.415 45.000 0.00 0.00 0.00 4.92
2166 3577 2.584835 AACAACAGCTCCTATGCCAA 57.415 45.000 0.00 0.00 0.00 4.52
2167 3578 2.814805 ACAACAGCTCCTATGCCAAT 57.185 45.000 0.00 0.00 0.00 3.16
2209 3622 1.967762 ACGCAAGCATGATTTCAACG 58.032 45.000 0.00 0.00 45.62 4.10
2239 3652 6.373005 AAATTTACCCCCTTTCAATTCCTG 57.627 37.500 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.530426 AAGACCTGCAATAGAACTGATTTTT 57.470 32.000 0.00 0.00 0.00 1.94
1 2 7.373493 CAAAGACCTGCAATAGAACTGATTTT 58.627 34.615 0.00 0.00 0.00 1.82
2 3 6.071728 CCAAAGACCTGCAATAGAACTGATTT 60.072 38.462 0.00 0.00 0.00 2.17
8 9 4.096984 CCATCCAAAGACCTGCAATAGAAC 59.903 45.833 0.00 0.00 0.00 3.01
16 17 0.038166 TGACCCATCCAAAGACCTGC 59.962 55.000 0.00 0.00 0.00 4.85
19 20 3.054361 ACATACTGACCCATCCAAAGACC 60.054 47.826 0.00 0.00 0.00 3.85
86 87 0.388659 CACACACACACAATTGGGGG 59.611 55.000 8.85 8.85 34.62 5.40
96 97 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
97 98 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
99 100 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
100 101 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
101 102 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
102 103 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
126 127 3.764434 TGTAAACCAAAACACTGGCTCAA 59.236 39.130 0.00 0.00 40.45 3.02
174 175 6.653989 TCTCCTGAAGAAATAATCAACCTCC 58.346 40.000 0.00 0.00 0.00 4.30
204 205 9.039165 CCCCATGGCATTTTCTATTTTCTATAT 57.961 33.333 6.09 0.00 0.00 0.86
205 206 7.454380 CCCCCATGGCATTTTCTATTTTCTATA 59.546 37.037 6.09 0.00 0.00 1.31
231 232 5.882557 ACCATATCTCAAAGTCACCAATCAC 59.117 40.000 0.00 0.00 0.00 3.06
299 300 1.822371 GACCAGAGAAGAGTCACTCCC 59.178 57.143 0.00 0.00 34.13 4.30
300 301 1.822371 GGACCAGAGAAGAGTCACTCC 59.178 57.143 0.00 0.00 34.13 3.85
305 306 2.520069 TCACTGGACCAGAGAAGAGTC 58.480 52.381 28.56 0.00 35.18 3.36
346 348 5.395103 CCCTAAACAATCTGTCCAGAGAGAG 60.395 48.000 3.10 0.00 41.33 3.20
415 418 9.793259 AACAGTTATAAGGATTTCTGAACTCAA 57.207 29.630 9.55 0.00 0.00 3.02
416 419 9.436957 GAACAGTTATAAGGATTTCTGAACTCA 57.563 33.333 9.55 0.00 0.00 3.41
481 485 1.546029 AGCTGTACTCGAGTTGCATCA 59.454 47.619 25.44 13.66 0.00 3.07
545 556 8.829612 CATAACACATATCTGAATACAGCACAA 58.170 33.333 0.00 0.00 43.17 3.33
562 573 3.156293 TGGAAACAGCAGCATAACACAT 58.844 40.909 0.00 0.00 35.01 3.21
628 654 3.633525 CCATTGTCCATGTGGATAACTGG 59.366 47.826 12.58 15.34 45.89 4.00
673 699 2.554032 ACAGCTGTGGCACTAATTGTTC 59.446 45.455 20.97 0.00 41.70 3.18
676 702 3.568538 GAAACAGCTGTGGCACTAATTG 58.431 45.455 22.49 13.57 41.70 2.32
767 793 8.138712 ACACCAATACGAATTACACACAAATTT 58.861 29.630 0.00 0.00 0.00 1.82
780 806 8.556213 AACAGTAATGTAACACCAATACGAAT 57.444 30.769 0.00 0.00 0.00 3.34
842 938 9.874215 CATATTTGATGACACAATACTAAGCTG 57.126 33.333 0.00 0.00 0.00 4.24
876 972 3.232213 TGCTTCGGAGACAGATGTAAC 57.768 47.619 0.00 0.00 34.32 2.50
881 978 2.106566 ACAGATGCTTCGGAGACAGAT 58.893 47.619 6.74 0.00 34.32 2.90
883 980 2.094286 AGAACAGATGCTTCGGAGACAG 60.094 50.000 6.74 0.00 34.32 3.51
890 987 4.328440 CAGACCTAAAGAACAGATGCTTCG 59.672 45.833 0.00 0.00 0.00 3.79
899 996 4.127171 GACAACTGCAGACCTAAAGAACA 58.873 43.478 23.35 0.00 0.00 3.18
939 1036 3.572632 AGGAGCTGCAATGTCACATAT 57.427 42.857 8.35 0.00 0.00 1.78
1014 1112 1.153823 ATCCTCGTCGCAGAAACCG 60.154 57.895 0.00 0.00 39.69 4.44
1017 1115 0.173481 CCTCATCCTCGTCGCAGAAA 59.827 55.000 0.00 0.00 39.69 2.52
1021 1119 2.121538 CCTCCTCATCCTCGTCGCA 61.122 63.158 0.00 0.00 0.00 5.10
1047 1145 1.748122 CACTGGGCCTGACATCTGC 60.748 63.158 18.12 0.00 0.00 4.26
1079 1177 1.613437 TGATCTTGTCTGCGTGAGTGA 59.387 47.619 0.00 0.00 0.00 3.41
1108 1206 3.089284 GCACCATAACCTTAGCCAAAGT 58.911 45.455 0.00 0.00 32.89 2.66
1112 1210 1.912731 TCTGCACCATAACCTTAGCCA 59.087 47.619 0.00 0.00 0.00 4.75
1131 1229 1.194781 TCAGGGCAGACACCTTCCTC 61.195 60.000 0.00 0.00 35.78 3.71
1139 1237 2.745698 CAGCTGTCAGGGCAGACA 59.254 61.111 5.25 10.88 45.64 3.41
1249 2644 3.393687 ACCAGATTTAGTAGATGGCCCA 58.606 45.455 0.00 0.00 34.24 5.36
1251 2646 6.360370 TCATACCAGATTTAGTAGATGGCC 57.640 41.667 0.00 0.00 34.24 5.36
1331 2726 8.846423 AGAGAGAGAAACCTCATCCTTTATTA 57.154 34.615 0.00 0.00 35.68 0.98
1372 2767 2.432444 ACATCCAAACCACCATACACG 58.568 47.619 0.00 0.00 0.00 4.49
1447 2844 5.100344 AGAGATCAGACATCATGCAAACT 57.900 39.130 0.00 0.00 0.00 2.66
1452 2849 4.095932 TGCAAAAGAGATCAGACATCATGC 59.904 41.667 0.00 0.00 0.00 4.06
1480 2877 1.301716 GCAGTCCTTTCGCCTGTGA 60.302 57.895 0.00 0.00 0.00 3.58
1482 2879 1.302033 CAGCAGTCCTTTCGCCTGT 60.302 57.895 0.00 0.00 0.00 4.00
1622 3022 3.207265 TCAAGGCACAAACTCAGCTAA 57.793 42.857 0.00 0.00 0.00 3.09
1663 3063 3.739401 AGGTTCTCCCCTTACCATTTG 57.261 47.619 0.00 0.00 34.32 2.32
1681 3081 0.391927 TTCGCATACCACGGGAAAGG 60.392 55.000 0.00 0.00 32.98 3.11
1715 3115 4.442706 ACAAGGTAAAGCATCCATCGTAG 58.557 43.478 0.00 0.00 0.00 3.51
1747 3147 3.081061 TGAACACACATACATGCTTCCC 58.919 45.455 0.00 0.00 0.00 3.97
1759 3159 1.831106 ACACCTCAGAGTGAACACACA 59.169 47.619 7.68 0.00 40.34 3.72
1760 3160 2.604046 ACACCTCAGAGTGAACACAC 57.396 50.000 7.68 1.16 40.34 3.82
1803 3205 5.281376 CACATGAACACGAAACGAAATCATC 59.719 40.000 0.00 0.00 0.00 2.92
1808 3210 3.866327 TCTCACATGAACACGAAACGAAA 59.134 39.130 0.00 0.00 0.00 3.46
1809 3211 3.449632 TCTCACATGAACACGAAACGAA 58.550 40.909 0.00 0.00 0.00 3.85
1810 3212 3.086818 TCTCACATGAACACGAAACGA 57.913 42.857 0.00 0.00 0.00 3.85
1811 3213 3.428534 TCATCTCACATGAACACGAAACG 59.571 43.478 0.00 0.00 0.00 3.60
1812 3214 4.990543 TCATCTCACATGAACACGAAAC 57.009 40.909 0.00 0.00 0.00 2.78
1870 3272 1.728971 GAGGCAGACAAACGACTGATG 59.271 52.381 0.00 0.00 36.38 3.07
1874 3276 1.333177 AGAGAGGCAGACAAACGACT 58.667 50.000 0.00 0.00 0.00 4.18
1907 3309 5.526111 CAGACGGAAGGTTAAAAGAACAAGA 59.474 40.000 0.00 0.00 0.00 3.02
1925 3327 4.201744 ACGAAGTTTGTTTAACACAGACGG 60.202 41.667 0.00 0.00 43.82 4.79
1974 3377 2.305009 GCATCTTGCAGCCTATTTCCT 58.695 47.619 0.00 0.00 44.26 3.36
2037 3440 6.506464 TCGTTCGTTCAAGAGACTAAAAAG 57.494 37.500 0.00 0.00 0.00 2.27
2038 3441 6.506827 CGTTCGTTCGTTCAAGAGACTAAAAA 60.507 38.462 0.00 0.00 0.00 1.94
2044 3449 2.378806 TCGTTCGTTCGTTCAAGAGAC 58.621 47.619 2.67 0.00 0.00 3.36
2062 3467 2.162208 AGTGCTACAAATGGCATGTTCG 59.838 45.455 0.00 0.00 45.01 3.95
2068 3473 2.284754 TCCAAGTGCTACAAATGGCA 57.715 45.000 0.00 0.00 40.52 4.92
2072 3477 5.748402 TCTGATGATCCAAGTGCTACAAAT 58.252 37.500 0.00 0.00 0.00 2.32
2078 3483 3.265221 TCCTTTCTGATGATCCAAGTGCT 59.735 43.478 0.00 0.00 0.00 4.40
2124 3535 0.444260 GGTCTCTTGCGCTTGCTTAC 59.556 55.000 9.73 0.00 40.12 2.34
2161 3572 8.041143 ACTACTACAAGGGAATAATATTGGCA 57.959 34.615 0.00 0.00 0.00 4.92
2167 3578 9.533253 GCGTTTTACTACTACAAGGGAATAATA 57.467 33.333 0.00 0.00 0.00 0.98
2209 3622 5.512298 TGAAAGGGGGTAAATTTAGTAGCC 58.488 41.667 0.00 0.00 38.21 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.