>input_sequence_85592
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---------------------------------------------------------ATGGCAATCAAGCGCGGTTTCTG
CGACGAGGATGAGGAGGAAGTGGCGCAGATGTCAGGCCCAGTGGACTTAAAGGAGGTCACTCACGCAGACAAGATCACAA
AGGAAACTTTGGCTAAGGTTATGGTGCAGAGGAAGGTGTCTGCCCTGACAGCTGCCCCGCGGACCGCGACAGCCCCCACC
CCTGCCCTGGAGAACACCACAGGCCCGACCCCTACCTCGGAGACTGCCCCGACCC-------------------------
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------------------------------------------------------------------------TCGCCCTG
GCCTGGGCCATCTACTAA--------------------------------------------------------------
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>chr4B_1_TraesCS4B01G259900
AAAAATCAGTTCTATTGCAGGTCTTTGGATGGGTCAGTATGTAAAGTATCAAATTGGTTTGTTGAATTCCGTGCTAATTC
GAGTAGCCCCCAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGGAATTTGAGCCAGTGTTTTGGTTTACAAAACCCAGGTG
TCTCCCTTGTATCTGGAGGTTGATTATTTCTTCAGGAGATGTAGATATAGAAAATAGAAAATGCCATGGGGGTGATTGGT
GACTTTGAGATATGGTGCTAGAGAAACTATCTAGAGTTGGAACTGCTGCAGAATGATTCGGGAGTGACT-CTTCTCTGGT
CCAGTGATTGGTGATTCTTCCTTGCTTCTCTCTCTGGACAGATTGTTTAGGGAAGTTCCTTGTTTATAACAGTTCTGTGT
TTAAC-ATTGCCAGACTTT-GAGTTCAGAAATCCTTATAACTGTTCTGTGTTTTTACACATTACTGTTTATCTATGTTCC
TCTGTGATGCAAC------TCGAGTACAGCTTACCTTGTT-AATACTTCTGGTCAGACCTTGCGATCTGCAAGCATTGTG
CTGTATTCAGATATGTG---TTATGCTGCTGTTT------------CCAGAAGTATATAAGTTGATGCTGCTTCTTAGTA
CTCCACTATGTCGCCAGTTATCCACATGGACAATGGACAGAAGAATTAACTCAATTTTGAACAATTAGTGCCACAGCTGT
TTCCTCAATTCTGCAGTTTTAACCGAGTTTAATAAAAGGGTTGGGTACATTAAATACTGCTGGTTAGACGTGAAATTTGT
GTGTAATTCGTATTGGTGTTACATTAC-----------------------------------------------------
-----------------TGTTTATCTAATCAGATCCAGAAGCACATAGTTGTTGTTGCAGCTTAGTATTGTGTCATCAAA
TATGCATTTTTG-TTACATCTGTCTCCGAAGCATCTGTTCTTTAGGTCTGCAGTTGTCTTCTGCTGAGACATTTCATATG
TGACATTGCAGCTCCTTTCCCAACATGTACCGGCTCCGAGCCAGGGA-AAGATTAAGATGGCAATCAAGCGCGGTTTCTG
CGACGAGGATGAGGAGGAAGTGGCGCAGATGTCAGGCCCAGTGGACTTAAAGGAGGTCACTCACGCAGACAAGATCACAA
AGGAAACTTTGGCTAAGGTTATGGTGCAGAGGAAGGTGTCTGCCCTGACAGCTGCCCCGCGGACCGCGACAGCCCCCACC
CCTGCCCTGGAGAACACCACAGGCCCGACCCCTACCTCGGAGACTGCCCCGACCC-------------------------
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------------------------------------------------------------------------TCGCCCTG
GCCTGGGCCATCTACTAAATCTGGTATGAAAATAACTTCACTTTCTTTCTAAATACATGTAGGTACATTGTAAATAATCT
AACACTAATAAAGGATGAGGTTTCTCTCTCTTAACTATAATTTGTTCGTGTATGGTGGTTTGGATGTTACCTGGTTTCAA
GTCTT--GATATCTTTTGAATATATCTAATTTTCATTTTAGAAAGTTTGCATGATGTCTGATCTCTTTTGCATTCTTCAC
AGGCGAAAGGACTGCTGTACAAATGGGCAATTGGCACAAGGCAAAGATTTCAGGAGAATGTTTGCATCAACAGGG---TT
TTTTCAGTTCCTCTTGTTTTCAGTTCCCTTCCTAATGGTGATCAGTCACAAACCTTAAAATTTAGCTGAGTTTGTGCCTT
GAAACTGGCTGAAGGGGACCAGCAAATGGTAAGGGGAGAACCTTTCCCGTGGTATGCGAACCAAGTCTTGTGGTCTACGA
TGGATGCTTTACCTTGTTCTGCAATGGGGAAGCATGTATGT--GTGTTCACTCTGAGGTGTTTGTCTTTGTCGTGGTGGC
GGCGGATGATTTCGTTTCGTGTTCATGTGAGATGATCGTATGTTCGTCTGTTGTCCAGGAAAATCCTGCATCATCAGTCG
TTTGTCTGCCTCTCTTGTGATGTCATTTTCTTGTTCTTTTAACCTTCCGTCTGTGTTAAACAAACTTCGTTCATCTTAGA
AA-TGTTCTTTTTCCGAGGAAATAGGCTGCAAGATGCATGATCATTGATCAGCCAGAACAAAAACAGCAGCCTCCTAATC
T--TTTTAGTCTCTTGAACGAACGAACGAACATGCCATTTGTAGCACTTGGATCATCAGAAAGGAAAA-CAGGCCGTTCG
CTAG-----ATATGGTAAGCAAGCGCAAGAGACCATAAACAACAGCTCCTATGCCAATATTATTCCCTT--GTAGTAGTA
AAACGCAAGCATGATTTCAACGGCTACTAAATTTACCCCCTTTCAATTCCTGTATGGATTTCCTCCACCTCTCATA
>chr4D_4
---AATCAATTCTATTACAAGTCTTTGGATGGGTCAGTATGTAAATTATCAAATTGGTTTGTTGAATTCCGTGCTAATTC
GAGTAGACCCCAATTT--------TGTGTGTGTGTGTGTGTGGAATCTGAACCAGCCTTTTGGTTTACAAAACCCAGGTG
TCTCCCTTGTAC----------------------------------ATAGAAAATAGAAAATGCCATGGGGATGATTCGT
GACTTTGAGATGTGGTGCTAGAGAAACTATCTAGAGTTGGAACTGCTGCAGGATGATTCAAAAGT-AACCGTTCTCTGGT
CCAGTGATTGGTGATTCTTCGTTGCTTTTCTCTCTGGACAGATTGTTTAGGGAAGTTCCTTGTTTATAACAGTTCTGTGT
TTTTAAATTGCCAGACTCAAGAGTTCAGAAATCCTTGTAACAGTTCTGTGTTT--ACACATTACTG-TTATTTATGTTCC
TCTGCGATGTTATGCAACATCGCGTACAGCTTACCTTGTTAAATACTTCTGGTCAGACCTTGCGATCTACAAGTACTGAG
CTGTATTCAGATTTGTG---TTAAGCTGCTGTTTATCTAATCAAATCCAGAAGCATATAAGTTGCTGCTGCTTCTCAGTA
TTCCACATGC-------------------ACAATGGACAGACGAATTAACTCAATTTTCAATAATTAGTGCGACAGTTGT
TTCCTCGATTCTGCTGTTTTAACCGAGTTCAATAAAAGGATTGGGTACATTAAATACTGCTGGTTAAACATGGAATTTAT
GTGTACTTTGCATTTGTGTTTCATTACTCCAATCTGCTCCCACCTGAATCGCAGAGCTTCTCCTTAGGCGCCCAACGCAC
CTGGACGGAGGAAGTACTGTTTATCTAATCAGATCCAGAAGCACATAGTTGTTGTTGTAGCTTAGTATTGTGTCATCAAA
TATGCATTTTTTTTTACGTTTGTCTCTGAAGCATCAGTTCTTTAGGTCTGCAGTTGTCTTCTATTGAGACATTTC-TATG
TGACATTGCAGCTCCTTTCCCAACATGTACCGGCTCCGAGCCAGGGACAAGATTAAGATGGCAATCAAGCGTGGGTTCAG
CGACGAGGATGAGGAGGAAGTGGCACAGATGTCAGGCCCAGTGGACTTAAAGGAGGCCACTCACGCAGACAAGATCACAA
AGGAAGCTTGGGCTAAGGTTATGGTGCACAGGAAGGCGTCTGCCTTGACAGCTGCCCCGCGGACCGCGACAGCCCCCACC
CCTGCCATGGAGAACGCCACAGGCCCGACCCCTACCTCGGAGACTGCCCCGACCCAGGGCCGGCCCTGAGGGGGGGCAGG
GGGGGCGACCGCCCCGGGCCCCCAAGGTCAAGGGGCCCCCTCCCGAAGGCACGCACGTAGCCGGCCGCGAGGAAGGCCAG
GGACGCAGGCATCGCACAGCCCGCTGACGCGGATTTCCTTCAATTTCGCAGGCGCAAGTCACGGACGCAGACACAGCTTC
CCTTCTTCTATGGTAGCTATTCCTCATCTAGTGGATCTGTAGGTGTATGCCGTCATGTACAGATGTAGTTCATTCTCCTT
TCAATTCAGATCGTTATTCCATATCTCCAAGCCCCGATCTAGCGATTTCTATTTCTATCGGCCGCAACGATCTCTGAATC
AATGGGTTGCTCAAGGCTGAGGCGATGCCTATTCTAGGCTCCAATCGTTGGAAGCCATTGCACATGGCCGAGCGCCTCCC
GCCAGGGCCATGAACCAGTCCACCGTGCGTCATCGCCGAGCACCGTCGTCCGAGATCCAGTCGTTCTCAGGTATATCATA
TTACCGTTTTGTTTTTTTTCAATTGATTGCAATTTTTTGTAGGTAGCTTACCAAGCTGATCGCTTGGTTTATTACCGTTT
CTCACAATCTCACTTATATTGCTAACTGACTAATTTACTTTCGCATGTGTCATTCAACCTAAAAATATATATTTTTGGTT
TTATCTAAGTGTCTTTTCGTACCATTTTGTATTTGTGTATATTAGTTAGAATCCAAATAGAATGTGAGGGCTACACCACA
TTCTAATGCAAAATTCCTCCATTTGAATTTATTAGGCCCCCTCAAATGTTGAGTATAAATTTGGTTAGAATTTAACTCGT
AAAAAATATGAGTTATATGCAAAAAAAAAGTATCATTGGGTAAGATTTCAAATAATGTTTTAAATGATCTATATTTTGTG
ATATATAGCATATACTCCATCCGTAAACTTATAAGATCGTTTAGATCACTATATCTTTTAAAAGTTTACAGAGGGAGTAG
TTTATTAATCAAATGTTAGGTTAAAAGTAGATTTAAAACCCAACAAGGACTAATAAATCTGGACAGAGAAAGTACCGTAC
CCAACATACAATGTCGAAATAACACAACTTATCATGGGCCAACACTTGTGGATCTCACAAAAAGGATCATCCTCGTAGAT
ACAGTTGCAGCGATAGCTATAGGAGCGTAGGCGAGATTGTTATAAATCTCGTATCCATTGCTATTATTATAAATTTTGTA
TAATACAAGGGGCCCCGAGTTCTAGTTTCGCCCCGGGCCCCCAAAATCACAAGACCGGCCCTGCCCCGACCCTCACCCTG
GCCCGAGCCATCCACTAAATCTGGTATAAAAATAACTTCTGTTTCTTTCTAAATACATGTAGGTACATTGTAAATAATCT
AACACGAATGAAGGATGGGGTCTCTCTCTCTTAACTATAATTTGTTTGTGTATGGTGGTTTGGATGTTACCTGGCTTCAG
AACTTTCGATGTCTTCTTAATATATCTAATTTTCATTTTAGAAGGTTTACATGATGTCTGATCACTTTTGCATTCTCCGC
AGGCGAATGGACTGCTGTACAAATAGGCAATTGGCACAAGGCAAAGATTTCAGGAGAATGTTTGCATCAACAGGGC---T
TTTTCAGTTCCTCTTGTTTTCAGTTCCCTTCCTAATGGTGATCAGTCACAAACGTTAAAATGTAGCCGAGTTTGTGTATT
GAGACTGGGTGAAGGGTACCAGTAAATGGTAAGGGGAGAAGCTTTCCCGTGGTATGCGAACCAAGTCTTGTGGT-TACGA
TGGATGCTTTACCTTGTTCTGCAATGCGGAAGCATGTA--TGCGTGTTCACTCTGAGGTGTTTGTCTTTGTCGTGGCGGC
GGCGTATGA------TTGGTGTTCATGTGAGATGATCGTATGTTCGTCTGTTGTCCAGGAAAATCCTGCATGATCGGTCG
TTTGTCTGCCTCTCTTGTGATGTCATTTCCTTGTTCTTTTAACCTTTCGCATGTGTTAAACAAACTTCGTTCATCGTAGA
AAATGTTCTTTTTCCGCGGAAACAGGCTGCAAGATGCATGATCATTGGTCAGCCAGAACAAAAATAGCAGCCTCCTAATA
ATCTTTTAATCTCTTGAACGAACGAATGAACAGGCCGTTTGTGGCACTTGGATCATCGGAAAGGAAAAACAGGCCGTTCA
CTAG-----ATATGATAAGCAAGCGCAAGAGACCATAAACAACAGCTCCTAGTGCC--ATTATTCCCTT--GTAGTAGTA
AAACGCAAGCATGATTTCAACAGCTACTAAATTTACCCCCTTTCAATTCCTATATGGATTTCCTCCACCTCTCATA
>chr4A_13
------------TATTACAAGTCTTTGGATGGGTC-GTCTGTAAATTGTCAAATAGGCTTGTTCAATTCCGTGCTAATTC
GAGTAGACCCCAATTGGTTTATAGTAGAACCCAGG------GGAATCCGAACCGGTG-TTTGGTTTACAAAACCCAGGTG
TCTCCCTTGTATCTCGAGGTTGATTATTTCTTCAGTAG--------ATAGAAAATAGAAAATGCCATGGGGTTGATTGGT
GACTTTGAGATATGGTGCTAGAGAAACTATCTAGAGTTGGAACTGCTGCAGAATGATTCAAGAGT-ACT-GTTCTCTGGT
CCAGTGATTGGTGATTCTTCCTTGCTTTTCTCTCTGGACAGATTGTTTAGGGAAGTTCCTTGTTTATAACAGTTCTGTGT
TTAAC-ATTGCCAGACTC-AGAGTTCAGAAATCCTTATAACAGTTCTGTGTTTTTACAC--TACTGTTTATCTATGTTCC
TCTGCGATGCAAC------TCGAGTACAGCTTACCTTGTT-AATACTTCTGGTCAGACCTTGCGATCTGCAAGCACTATG
CTGTATTCAGATTTGTGGTGTTATGCTGCTGTTT------------CCAGAAGTATATAAGTTGATGCTGCTTCTTAGTA
CTCCACTATGTCGTCAGTTATCCACATGGACAATGTACACAAGAATTAACTCAATTTTCAATAATTAATGCCACAGCTGT
TTCCTCAATTCTGTAGTTTTAACCGAGTTTAA-AAAAGGGTTGGGTACATTAAATACTGCTGGTTAGACGTGGAATTCGT
GTGTACTTCATATTGGTGTTACAT--------------------------------------------------------
--------------TACTGTTTATCTAATCAGATCCCGTAGCACATAGTTG---TTGTAGCTTAGTATTGTGTCATCAAA
TATGCATTTTCTTT-ACGTTTGTCTCTGAAGCATCAGTTCTTTAGGTCTGCAGTTGTCTTCTGCTGAGACATTTC-TATG
TGACATTGCAGCTCCTTTCCCAACATGTACCGGCTCCGAGCCAGGGACAAGATTAAGATGGCAATCAAGCGTGGGTTCAG
CGATGAGGATGAGGAGGAAGTGACACAGATGTCAGGCCCAGTGGACTTAAAGGAGGCCACCCACGCAGACAAGATCACAA
AGGAAGCTTGGGCTAAGGTTATCGTGCACAGGAAAGCGTCTGCCCTGACAGGTGCCCCGCGGATCGCGACAGGCCCCACC
CCTGCCCTGGAGAACGCCACAGGCCCGACCCCTACCTCGGAGACTGCCCCGACCC-------------------------
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------------------------------------------------------------------------TCGCCCTG
GCCCGAGCCATCCACTAAATCTGGTATAAAAATAACTTCTGTTTCTTTCTAAATACATGTAGGTACATTCTAAATGATCT
AACATGAATAAAGGATGGGGTTTCTCTCTCTTAACTATAATTTGTTTGTGTATGGTGGTTTGGATGTTATCTGGTTTCAA
AACTTTCGATGTCTTTTTAGTATATCTAATTTTCATTTTAAAAGGTTTACATGATGTCTGATCTCTTTTGCATTCTCCGC
AGGCGAAAGGACTGCTGTACAAATGGGCAATTGGCACAAGGCAAAGATTTCAGGAGAATGTTTGCATCAACAGGTTTTTT
TTTTCAGTTCCTCTTGTTTTTAGTTCCCTTCCTAATGGTGATCAGTCACAAACCTTAAAATGTAGCTGAGTTTGTGCCTT
GAAACTGGCTGAAGGGTACTGGTAAATGGTAAGGGGAGAAGCTTTCCCGTGGTATGCGAACCAAGTCTTGTGGT-TACGA
TGGATGCTTTACCTTGTTCTGCAATGCGGAAGCATGTA--T--GTGTTCACTCTGAGGTGTTTGTCTTTGTCGTGGTGGT
GGCATATGA-----TTTCGTGTTCATGTGAGATGATCGTATGTTCGTCTGGTGTCTATGAAAATCCTGCATGTTCGGTCG
TTTGTCTGCCGCTCTTGTGATGTCATCACCTTATTCTTTTAACCTTTCGTCCGTGTT-AACAAGCTTCGTTCATCTTAG-
AAATGTTCTTTTTCCGCGGAAACAGGTTGCAAGATGCATGATCATTGATCAGCCAGAACAAAAACAGCAGCCTCCTAA--
-TCTTTTAATCTCTTGAACGAACGCATGAACAGGCCGTTTG-------TGGATCATCAGAAAGGAAAA-CAGGCCGTTCG
CCGCTAGATATATGATACGCAAGCGCAAGAGACCATAAACAACAGCTCCTAGTGCC--ACCATTCCCTATAGTAGTACTA
AAACGCAAGCATGATTTCA---------------------------------------------------------
>SNPs
SSS-----S-------S--S-------------------------S----------------------------------
------S---------SS-SSSS-----------------------S---S-----------------------------
--------------S--------------------S--SSSSSSSS-------------------------S--------
-----------------------------------------------------------SS----S----S---------
---------------------------S----------------------------------------------------
-----------------SS----------------------S--------------------------------------
----S----------------------------------------------------------------------S----
------------S-------------------------------------------------------------------
-------------S--------------------------------------------S--S------------------
------------------------------------------------------------------------S-------
-----S--------------------------------------------------------------------------
---------------------------------------------------------S----------------------
-----------S-----S-S------S--------S---------------------------------------S----
-----------------------------------------------------------------------S--S---S-
------------------------S-------------------------------S-----------------------
-----S---S------------------S-------S-------------------------------------------
---------------S----------------------------------------------------------------
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---S-S------S--------------S-----------SS---------------------------------------
-----S-----------S----------------------------S---------------------------------
SS--------S------S-------------------------S----S---------------------------S-S-
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-------------------------------------------------------------S------------------
----------------S-----S-----------------S---------------------------------S-----
--------------------------S-----------SS----------------------------------------
----S----SSSSS---------------------------------------------------------S---S----
----------------------------S-----------------S---------------------------------
----------------S-----S--------------------------------------------------------S
S-------S-----------------S-----S---S-----S-------------------------------------
--------------S------------------------------------SSS-SSS----------------------
---------------------S-----------------------------S------------------------
>forward_98
------------------------------------------------------------------------------TC
GAGTAGCCCCCAATTGTG--------------------------------------------------------------
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>reverse_1115
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--------------------------------------------------------------------------TTTCTG
CGACGAGGATGAGG------------------------------------------------------------------
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>forward_103
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---TAGCCCCCAATTGTGTGTGT---------------------------------------------------------
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>reverse_3081
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----------------------------------------CCTTTCCCGTGGTATGCGAA--------------------
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