Multiple sequence alignment - TraesCS4B01G249400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G249400 chr4B 100.000 2435 0 0 1 2435 515067378 515064944 0.000000e+00 4497.0
1 TraesCS4B01G249400 chr4A 87.167 1278 108 30 778 2027 46215076 46216325 0.000000e+00 1400.0
2 TraesCS4B01G249400 chr4A 86.828 372 37 7 3 373 46169112 46169472 2.920000e-109 405.0
3 TraesCS4B01G249400 chr4A 85.787 197 24 4 425 618 558680076 558679881 3.170000e-49 206.0
4 TraesCS4B01G249400 chr4D 96.030 806 29 3 4 809 418826634 418827436 0.000000e+00 1308.0
5 TraesCS4B01G249400 chr4D 93.686 776 34 5 907 1667 418850702 418851477 0.000000e+00 1147.0
6 TraesCS4B01G249400 chr4D 86.316 95 10 2 628 722 40817493 40817584 1.540000e-17 100.0
7 TraesCS4B01G249400 chr4D 94.915 59 3 0 801 859 418850642 418850700 2.580000e-15 93.5
8 TraesCS4B01G249400 chr3D 90.566 53 5 0 998 1050 32178639 32178691 1.210000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G249400 chr4B 515064944 515067378 2434 True 4497.00 4497 100.0000 1 2435 1 chr4B.!!$R1 2434
1 TraesCS4B01G249400 chr4A 46215076 46216325 1249 False 1400.00 1400 87.1670 778 2027 1 chr4A.!!$F2 1249
2 TraesCS4B01G249400 chr4D 418826634 418827436 802 False 1308.00 1308 96.0300 4 809 1 chr4D.!!$F2 805
3 TraesCS4B01G249400 chr4D 418850642 418851477 835 False 620.25 1147 94.3005 801 1667 2 chr4D.!!$F3 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 861 0.108041 ATTACGCGGGATTCCAACGT 60.108 50.0 21.23 21.23 44.37 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2384 2422 0.031111 TGGGAAGGTCATCTCGGGAT 60.031 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.884895 TGCCCCTCATGTTTACATACTG 58.115 45.455 0.00 0.00 34.26 2.74
46 47 6.974048 TCATGTTTACATACTGCATTGAATGC 59.026 34.615 22.42 22.42 44.89 3.56
127 128 0.250727 GCTCAGCACAACTAACCCCA 60.251 55.000 0.00 0.00 0.00 4.96
129 130 2.355716 GCTCAGCACAACTAACCCCATA 60.356 50.000 0.00 0.00 0.00 2.74
163 164 4.741928 AAAACATTACTCCTGGGGAAGT 57.258 40.909 0.00 0.00 0.00 3.01
172 173 3.117131 ACTCCTGGGGAAGTGAAAAATGT 60.117 43.478 0.00 0.00 0.00 2.71
176 177 4.284234 CCTGGGGAAGTGAAAAATGTGAAT 59.716 41.667 0.00 0.00 0.00 2.57
192 193 3.123050 GTGAATGCCACCACAAAAGAAC 58.877 45.455 0.00 0.00 39.86 3.01
209 210 0.459585 AACGTCACAGTGAAGTGCGT 60.460 50.000 21.07 15.51 46.22 5.24
216 217 0.512952 CAGTGAAGTGCGTGTTAGCC 59.487 55.000 0.00 0.00 36.02 3.93
227 228 4.868734 GTGCGTGTTAGCCTCTAGTTATTT 59.131 41.667 0.00 0.00 36.02 1.40
230 231 5.232414 GCGTGTTAGCCTCTAGTTATTTCTG 59.768 44.000 0.00 0.00 0.00 3.02
280 281 3.683802 GGATCCATCCCATGAAGATGAC 58.316 50.000 20.92 13.65 43.15 3.06
513 514 7.228108 ACATGTGATAAGATAACTCATGCCTTG 59.772 37.037 0.00 0.00 38.34 3.61
627 628 6.689177 GCCATAAGCTCCAAATTCTACTAGGT 60.689 42.308 0.00 0.00 38.99 3.08
628 629 7.283329 CCATAAGCTCCAAATTCTACTAGGTT 58.717 38.462 0.00 0.00 0.00 3.50
632 633 7.689446 AGCTCCAAATTCTACTAGGTTTTTC 57.311 36.000 0.00 0.00 0.00 2.29
634 635 6.127703 GCTCCAAATTCTACTAGGTTTTTCCC 60.128 42.308 0.00 0.00 36.75 3.97
711 712 1.135046 GCATGATCTCGATCCACACG 58.865 55.000 0.00 0.00 37.02 4.49
852 853 2.014128 CAAGTTTCCATTACGCGGGAT 58.986 47.619 12.47 0.00 32.15 3.85
860 861 0.108041 ATTACGCGGGATTCCAACGT 60.108 50.000 21.23 21.23 44.37 3.99
863 864 0.320596 ACGCGGGATTCCAACGTAAA 60.321 50.000 17.56 0.00 41.69 2.01
864 865 0.797542 CGCGGGATTCCAACGTAAAA 59.202 50.000 4.80 0.00 0.00 1.52
865 866 1.201987 CGCGGGATTCCAACGTAAAAG 60.202 52.381 4.80 0.00 0.00 2.27
866 867 1.466866 GCGGGATTCCAACGTAAAAGC 60.467 52.381 4.80 0.00 0.00 3.51
877 878 3.528597 ACGTAAAAGCAAAAAGGGCAA 57.471 38.095 0.00 0.00 0.00 4.52
881 882 4.568760 CGTAAAAGCAAAAAGGGCAAAAGA 59.431 37.500 0.00 0.00 0.00 2.52
886 887 3.118298 AGCAAAAAGGGCAAAAGACACAT 60.118 39.130 0.00 0.00 0.00 3.21
887 888 3.002553 GCAAAAAGGGCAAAAGACACATG 59.997 43.478 0.00 0.00 0.00 3.21
888 889 4.440880 CAAAAAGGGCAAAAGACACATGA 58.559 39.130 0.00 0.00 0.00 3.07
889 890 4.326504 AAAAGGGCAAAAGACACATGAG 57.673 40.909 0.00 0.00 0.00 2.90
890 891 2.664402 AGGGCAAAAGACACATGAGT 57.336 45.000 0.00 0.00 0.00 3.41
891 892 3.788227 AGGGCAAAAGACACATGAGTA 57.212 42.857 0.00 0.00 0.00 2.59
892 893 3.412386 AGGGCAAAAGACACATGAGTAC 58.588 45.455 0.00 0.00 0.00 2.73
893 894 2.488153 GGGCAAAAGACACATGAGTACC 59.512 50.000 0.00 0.00 0.00 3.34
894 895 2.488153 GGCAAAAGACACATGAGTACCC 59.512 50.000 0.00 0.00 0.00 3.69
899 900 5.818678 AAAGACACATGAGTACCCACTAA 57.181 39.130 0.00 0.00 34.21 2.24
908 909 5.086104 TGAGTACCCACTAAGCAAAGATC 57.914 43.478 0.00 0.00 34.21 2.75
913 914 3.197766 ACCCACTAAGCAAAGATCATCGA 59.802 43.478 0.00 0.00 0.00 3.59
926 927 5.467035 AGATCATCGATCTTCCTTTCTCC 57.533 43.478 0.00 0.00 45.86 3.71
927 928 5.147032 AGATCATCGATCTTCCTTTCTCCT 58.853 41.667 0.00 0.00 45.86 3.69
990 1006 3.196254 CACCCCATCCATTTGAAAAGGAG 59.804 47.826 7.97 0.93 34.40 3.69
1089 1107 1.519455 CTTCAGGGACCGATGCGTC 60.519 63.158 0.00 0.00 0.00 5.19
1222 1240 1.913762 CTGTCCAAGGTCCCGGAGT 60.914 63.158 0.73 0.00 29.98 3.85
1300 1318 1.562672 GGTTAAGGGCAGCCTCCTCA 61.563 60.000 12.43 0.00 32.59 3.86
1401 1419 1.069668 GTCTTCGGGCGGTACCATTAT 59.930 52.381 13.54 0.00 42.05 1.28
1654 1682 0.465460 TGTGTTTCCCTGGAGTGTGC 60.465 55.000 0.00 0.00 0.00 4.57
1674 1705 0.391130 CTCGGTGTGTGTATGGGGTG 60.391 60.000 0.00 0.00 0.00 4.61
1686 1717 8.664992 TGTGTGTATGGGGTGATATAATACAAT 58.335 33.333 0.00 0.00 35.96 2.71
1707 1738 1.995484 CTCTAGTCCATGTTGTGCACG 59.005 52.381 13.13 0.00 0.00 5.34
1708 1739 1.616374 TCTAGTCCATGTTGTGCACGA 59.384 47.619 13.13 7.71 0.00 4.35
1724 1755 1.890041 CGAGTCGTTTGGTTGCCCA 60.890 57.895 3.82 0.00 39.65 5.36
1728 1759 0.173708 GTCGTTTGGTTGCCCACAAA 59.826 50.000 0.00 0.00 41.67 2.83
1734 1765 1.358759 GGTTGCCCACAAAGTCACG 59.641 57.895 0.00 0.00 37.58 4.35
1755 1786 5.920840 CACGAGTTACATGAGAGAAGAAACA 59.079 40.000 0.00 0.00 0.00 2.83
1757 1788 5.920840 CGAGTTACATGAGAGAAGAAACACA 59.079 40.000 0.00 0.00 0.00 3.72
1763 1794 3.206150 TGAGAGAAGAAACACAAGCACC 58.794 45.455 0.00 0.00 0.00 5.01
1775 1806 0.029567 CAAGCACCGCGTTTGGTTAA 59.970 50.000 18.47 0.00 41.38 2.01
1798 1830 1.167851 TTGTGCTGCCTAGATGCAAC 58.832 50.000 0.00 0.00 41.51 4.17
1799 1831 0.036590 TGTGCTGCCTAGATGCAACA 59.963 50.000 0.00 0.38 41.51 3.33
1842 1878 5.416013 TGTACACTGATACTCTCACCTCTTG 59.584 44.000 0.00 0.00 0.00 3.02
1844 1880 4.461081 ACACTGATACTCTCACCTCTTGTC 59.539 45.833 0.00 0.00 0.00 3.18
1845 1881 4.020543 ACTGATACTCTCACCTCTTGTCC 58.979 47.826 0.00 0.00 0.00 4.02
1846 1882 4.019858 CTGATACTCTCACCTCTTGTCCA 58.980 47.826 0.00 0.00 0.00 4.02
1847 1883 4.614475 TGATACTCTCACCTCTTGTCCAT 58.386 43.478 0.00 0.00 0.00 3.41
1851 1887 4.357325 ACTCTCACCTCTTGTCCATATGT 58.643 43.478 1.24 0.00 0.00 2.29
1855 1891 5.248248 TCTCACCTCTTGTCCATATGTTGAA 59.752 40.000 1.24 0.00 0.00 2.69
1859 1895 5.940470 ACCTCTTGTCCATATGTTGAACTTC 59.060 40.000 1.24 0.00 0.00 3.01
1861 1897 6.656693 CCTCTTGTCCATATGTTGAACTTCTT 59.343 38.462 1.24 0.00 0.00 2.52
1862 1898 7.824289 CCTCTTGTCCATATGTTGAACTTCTTA 59.176 37.037 1.24 0.00 0.00 2.10
1863 1899 8.547967 TCTTGTCCATATGTTGAACTTCTTAC 57.452 34.615 1.24 0.00 0.00 2.34
1864 1900 8.375506 TCTTGTCCATATGTTGAACTTCTTACT 58.624 33.333 1.24 0.00 0.00 2.24
1869 1905 9.444600 TCCATATGTTGAACTTCTTACTTTACC 57.555 33.333 1.24 0.00 0.00 2.85
1870 1906 8.388103 CCATATGTTGAACTTCTTACTTTACCG 58.612 37.037 1.24 0.00 0.00 4.02
1871 1907 9.146984 CATATGTTGAACTTCTTACTTTACCGA 57.853 33.333 0.00 0.00 0.00 4.69
1873 1909 7.846644 TGTTGAACTTCTTACTTTACCGAAA 57.153 32.000 0.00 0.00 0.00 3.46
1874 1910 8.266392 TGTTGAACTTCTTACTTTACCGAAAA 57.734 30.769 0.00 0.00 0.00 2.29
1875 1911 8.728833 TGTTGAACTTCTTACTTTACCGAAAAA 58.271 29.630 0.00 0.00 0.00 1.94
1876 1912 9.218359 GTTGAACTTCTTACTTTACCGAAAAAG 57.782 33.333 7.62 7.62 41.35 2.27
1877 1913 8.721019 TGAACTTCTTACTTTACCGAAAAAGA 57.279 30.769 14.08 0.00 38.50 2.52
1884 1920 7.799914 TCTTACTTTACCGAAAAAGATTTTCGC 59.200 33.333 24.74 5.75 46.89 4.70
1885 1921 5.217393 ACTTTACCGAAAAAGATTTTCGCC 58.783 37.500 24.74 3.60 46.89 5.54
1886 1922 5.009310 ACTTTACCGAAAAAGATTTTCGCCT 59.991 36.000 24.74 16.73 46.89 5.52
1887 1923 3.554259 ACCGAAAAAGATTTTCGCCTC 57.446 42.857 24.74 4.40 46.89 4.70
1888 1924 2.095919 ACCGAAAAAGATTTTCGCCTCG 60.096 45.455 24.74 16.55 46.89 4.63
1889 1925 1.905049 CGAAAAAGATTTTCGCCTCGC 59.095 47.619 20.59 0.00 43.52 5.03
1890 1926 2.412847 CGAAAAAGATTTTCGCCTCGCT 60.413 45.455 20.59 0.00 43.52 4.93
1891 1927 3.565516 GAAAAAGATTTTCGCCTCGCTT 58.434 40.909 0.33 0.00 0.00 4.68
1892 1928 3.643159 AAAAGATTTTCGCCTCGCTTT 57.357 38.095 0.00 0.00 0.00 3.51
1897 1933 2.399396 TTTTCGCCTCGCTTTCTTTG 57.601 45.000 0.00 0.00 0.00 2.77
1900 1936 1.710013 TCGCCTCGCTTTCTTTGTAG 58.290 50.000 0.00 0.00 0.00 2.74
1910 1946 6.599437 TCGCTTTCTTTGTAGATAAAGCAAC 58.401 36.000 16.21 0.00 41.31 4.17
1912 1948 5.795441 GCTTTCTTTGTAGATAAAGCAACGG 59.205 40.000 12.39 0.00 41.08 4.44
1920 1956 0.802494 ATAAAGCAACGGCCGAACAG 59.198 50.000 35.90 18.69 42.56 3.16
1922 1958 4.626081 AGCAACGGCCGAACAGCT 62.626 61.111 35.90 28.74 42.56 4.24
1930 1966 1.519408 GGCCGAACAGCTTACAAAGA 58.481 50.000 0.00 0.00 0.00 2.52
1941 1977 4.331168 CAGCTTACAAAGATAGCTCACACC 59.669 45.833 0.00 0.00 43.04 4.16
1953 1989 2.520741 CACACCCACACCAACCCC 60.521 66.667 0.00 0.00 0.00 4.95
1954 1990 3.024356 ACACCCACACCAACCCCA 61.024 61.111 0.00 0.00 0.00 4.96
1955 1991 2.399607 ACACCCACACCAACCCCAT 61.400 57.895 0.00 0.00 0.00 4.00
1993 2029 8.896744 GGTTTACAATATAAGTACAAAGGGTCC 58.103 37.037 0.00 0.00 0.00 4.46
1998 2036 4.650972 ATAAGTACAAAGGGTCCAAGCA 57.349 40.909 0.00 0.00 0.00 3.91
1999 2037 2.568623 AGTACAAAGGGTCCAAGCAG 57.431 50.000 0.00 0.00 0.00 4.24
2015 2053 4.825085 CCAAGCAGGAAACCTAGTAAACAA 59.175 41.667 0.00 0.00 41.22 2.83
2019 2057 7.039313 AGCAGGAAACCTAGTAAACAAAAAG 57.961 36.000 0.00 0.00 29.64 2.27
2027 2065 6.816136 ACCTAGTAAACAAAAAGCAAGCAAT 58.184 32.000 0.00 0.00 0.00 3.56
2028 2066 6.701400 ACCTAGTAAACAAAAAGCAAGCAATG 59.299 34.615 0.00 0.00 0.00 2.82
2029 2067 6.701400 CCTAGTAAACAAAAAGCAAGCAATGT 59.299 34.615 0.00 0.00 0.00 2.71
2030 2068 6.983474 AGTAAACAAAAAGCAAGCAATGTT 57.017 29.167 0.00 0.00 32.78 2.71
2031 2069 9.243637 CTAGTAAACAAAAAGCAAGCAATGTTA 57.756 29.630 0.00 0.00 31.33 2.41
2032 2070 8.485976 AGTAAACAAAAAGCAAGCAATGTTAA 57.514 26.923 0.00 0.00 31.33 2.01
2033 2071 8.940952 AGTAAACAAAAAGCAAGCAATGTTAAA 58.059 25.926 0.00 0.00 31.33 1.52
2034 2072 8.994881 GTAAACAAAAAGCAAGCAATGTTAAAC 58.005 29.630 0.00 0.22 31.33 2.01
2035 2073 6.983474 ACAAAAAGCAAGCAATGTTAAACT 57.017 29.167 0.00 0.00 0.00 2.66
2036 2074 8.485976 AACAAAAAGCAAGCAATGTTAAACTA 57.514 26.923 0.00 0.00 29.89 2.24
2037 2075 8.485976 ACAAAAAGCAAGCAATGTTAAACTAA 57.514 26.923 0.00 0.00 0.00 2.24
2038 2076 8.940952 ACAAAAAGCAAGCAATGTTAAACTAAA 58.059 25.926 0.00 0.00 0.00 1.85
2039 2077 9.424659 CAAAAAGCAAGCAATGTTAAACTAAAG 57.575 29.630 0.00 0.00 0.00 1.85
2040 2078 8.940768 AAAAGCAAGCAATGTTAAACTAAAGA 57.059 26.923 0.00 0.00 0.00 2.52
2041 2079 8.940768 AAAGCAAGCAATGTTAAACTAAAGAA 57.059 26.923 0.00 0.00 0.00 2.52
2042 2080 8.940768 AAGCAAGCAATGTTAAACTAAAGAAA 57.059 26.923 0.00 0.00 0.00 2.52
2043 2081 8.940768 AGCAAGCAATGTTAAACTAAAGAAAA 57.059 26.923 0.00 0.00 0.00 2.29
2044 2082 9.377312 AGCAAGCAATGTTAAACTAAAGAAAAA 57.623 25.926 0.00 0.00 0.00 1.94
2059 2097 9.021807 ACTAAAGAAAAATAACTAAAGGAGCCC 57.978 33.333 0.00 0.00 0.00 5.19
2060 2098 7.849322 AAAGAAAAATAACTAAAGGAGCCCA 57.151 32.000 0.00 0.00 0.00 5.36
2061 2099 6.835819 AGAAAAATAACTAAAGGAGCCCAC 57.164 37.500 0.00 0.00 0.00 4.61
2062 2100 6.552932 AGAAAAATAACTAAAGGAGCCCACT 58.447 36.000 0.00 0.00 0.00 4.00
2063 2101 7.010771 AGAAAAATAACTAAAGGAGCCCACTT 58.989 34.615 0.00 0.00 0.00 3.16
2064 2102 6.590234 AAAATAACTAAAGGAGCCCACTTG 57.410 37.500 0.00 0.00 0.00 3.16
2065 2103 5.514500 AATAACTAAAGGAGCCCACTTGA 57.486 39.130 0.00 0.00 0.00 3.02
2066 2104 5.717119 ATAACTAAAGGAGCCCACTTGAT 57.283 39.130 0.00 0.00 0.00 2.57
2067 2105 3.636153 ACTAAAGGAGCCCACTTGATC 57.364 47.619 0.00 0.00 0.00 2.92
2068 2106 3.185455 ACTAAAGGAGCCCACTTGATCT 58.815 45.455 0.00 0.00 0.00 2.75
2069 2107 3.589288 ACTAAAGGAGCCCACTTGATCTT 59.411 43.478 0.00 0.00 0.00 2.40
2070 2108 2.503895 AAGGAGCCCACTTGATCTTG 57.496 50.000 0.00 0.00 0.00 3.02
2071 2109 1.661463 AGGAGCCCACTTGATCTTGA 58.339 50.000 0.00 0.00 0.00 3.02
2072 2110 1.280421 AGGAGCCCACTTGATCTTGAC 59.720 52.381 0.00 0.00 0.00 3.18
2073 2111 1.003580 GGAGCCCACTTGATCTTGACA 59.996 52.381 0.00 0.00 0.00 3.58
2074 2112 2.553028 GGAGCCCACTTGATCTTGACAA 60.553 50.000 0.00 0.00 0.00 3.18
2075 2113 3.350833 GAGCCCACTTGATCTTGACAAT 58.649 45.455 0.00 0.00 0.00 2.71
2076 2114 3.087031 AGCCCACTTGATCTTGACAATG 58.913 45.455 0.00 0.00 0.00 2.82
2077 2115 3.084039 GCCCACTTGATCTTGACAATGA 58.916 45.455 0.00 0.00 0.00 2.57
2078 2116 3.128242 GCCCACTTGATCTTGACAATGAG 59.872 47.826 0.00 0.00 0.00 2.90
2079 2117 3.128242 CCCACTTGATCTTGACAATGAGC 59.872 47.826 0.00 0.00 0.00 4.26
2080 2118 4.008330 CCACTTGATCTTGACAATGAGCT 58.992 43.478 0.00 0.00 0.00 4.09
2081 2119 4.094590 CCACTTGATCTTGACAATGAGCTC 59.905 45.833 6.82 6.82 0.00 4.09
2082 2120 4.694037 CACTTGATCTTGACAATGAGCTCA 59.306 41.667 20.79 20.79 0.00 4.26
2083 2121 5.180680 CACTTGATCTTGACAATGAGCTCAA 59.819 40.000 22.50 0.00 0.00 3.02
2084 2122 5.766670 ACTTGATCTTGACAATGAGCTCAAA 59.233 36.000 22.50 9.11 30.42 2.69
2085 2123 6.433404 ACTTGATCTTGACAATGAGCTCAAAT 59.567 34.615 22.50 10.20 30.42 2.32
2086 2124 6.829229 TGATCTTGACAATGAGCTCAAATT 57.171 33.333 22.50 8.80 0.00 1.82
2087 2125 7.223260 TGATCTTGACAATGAGCTCAAATTT 57.777 32.000 22.50 7.97 0.00 1.82
2088 2126 7.663827 TGATCTTGACAATGAGCTCAAATTTT 58.336 30.769 22.50 7.56 0.00 1.82
2089 2127 7.811236 TGATCTTGACAATGAGCTCAAATTTTC 59.189 33.333 22.50 14.12 0.00 2.29
2090 2128 6.144854 TCTTGACAATGAGCTCAAATTTTCG 58.855 36.000 22.50 7.92 0.00 3.46
2091 2129 5.687770 TGACAATGAGCTCAAATTTTCGA 57.312 34.783 22.50 2.98 0.00 3.71
2092 2130 6.070897 TGACAATGAGCTCAAATTTTCGAA 57.929 33.333 22.50 0.00 0.00 3.71
2093 2131 6.144854 TGACAATGAGCTCAAATTTTCGAAG 58.855 36.000 22.50 1.13 0.00 3.79
2094 2132 6.017192 TGACAATGAGCTCAAATTTTCGAAGA 60.017 34.615 22.50 0.00 0.00 2.87
2095 2133 6.376978 ACAATGAGCTCAAATTTTCGAAGAG 58.623 36.000 22.50 2.38 38.43 2.85
2128 2166 0.034896 TCCCAAGGAGAACACGAAGC 59.965 55.000 0.00 0.00 0.00 3.86
2129 2167 1.291877 CCCAAGGAGAACACGAAGCG 61.292 60.000 0.00 0.00 0.00 4.68
2130 2168 0.319555 CCAAGGAGAACACGAAGCGA 60.320 55.000 0.00 0.00 0.00 4.93
2131 2169 0.784778 CAAGGAGAACACGAAGCGAC 59.215 55.000 0.00 0.00 0.00 5.19
2132 2170 0.663568 AAGGAGAACACGAAGCGACG 60.664 55.000 0.00 4.25 39.31 5.12
2134 2172 0.938168 GGAGAACACGAAGCGACGTT 60.938 55.000 8.33 0.00 44.76 3.99
2135 2173 0.430110 GAGAACACGAAGCGACGTTC 59.570 55.000 8.33 14.31 44.76 3.95
2136 2174 0.938168 AGAACACGAAGCGACGTTCC 60.938 55.000 16.75 2.30 44.76 3.62
2137 2175 1.210545 GAACACGAAGCGACGTTCCA 61.211 55.000 8.33 0.00 44.76 3.53
2138 2176 1.213094 AACACGAAGCGACGTTCCAG 61.213 55.000 8.33 1.43 44.76 3.86
2139 2177 2.049433 ACGAAGCGACGTTCCAGG 60.049 61.111 5.50 0.00 44.14 4.45
2140 2178 2.049433 CGAAGCGACGTTCCAGGT 60.049 61.111 0.00 0.00 0.00 4.00
2141 2179 1.663702 CGAAGCGACGTTCCAGGTT 60.664 57.895 0.00 0.00 0.00 3.50
2142 2180 1.860078 GAAGCGACGTTCCAGGTTG 59.140 57.895 0.00 0.00 0.00 3.77
2143 2181 0.878961 GAAGCGACGTTCCAGGTTGT 60.879 55.000 0.00 0.00 0.00 3.32
2144 2182 0.390124 AAGCGACGTTCCAGGTTGTA 59.610 50.000 0.00 0.00 0.00 2.41
2145 2183 0.319297 AGCGACGTTCCAGGTTGTAC 60.319 55.000 0.00 0.00 0.00 2.90
2146 2184 0.598158 GCGACGTTCCAGGTTGTACA 60.598 55.000 0.00 0.00 0.00 2.90
2147 2185 1.855513 CGACGTTCCAGGTTGTACAA 58.144 50.000 3.59 3.59 0.00 2.41
2148 2186 1.790623 CGACGTTCCAGGTTGTACAAG 59.209 52.381 8.98 0.00 0.00 3.16
2149 2187 2.140717 GACGTTCCAGGTTGTACAAGG 58.859 52.381 8.98 7.30 0.00 3.61
2150 2188 1.764134 ACGTTCCAGGTTGTACAAGGA 59.236 47.619 8.98 9.73 0.00 3.36
2151 2189 2.171027 ACGTTCCAGGTTGTACAAGGAA 59.829 45.455 18.89 18.89 36.10 3.36
2152 2190 2.806244 CGTTCCAGGTTGTACAAGGAAG 59.194 50.000 21.81 14.53 38.90 3.46
2153 2191 3.743269 CGTTCCAGGTTGTACAAGGAAGT 60.743 47.826 21.81 0.00 38.90 3.01
2154 2192 4.501915 CGTTCCAGGTTGTACAAGGAAGTA 60.502 45.833 21.81 5.05 38.90 2.24
2155 2193 4.884668 TCCAGGTTGTACAAGGAAGTAG 57.115 45.455 8.98 0.00 0.00 2.57
2156 2194 4.228824 TCCAGGTTGTACAAGGAAGTAGT 58.771 43.478 8.98 0.00 0.00 2.73
2157 2195 5.396485 TCCAGGTTGTACAAGGAAGTAGTA 58.604 41.667 8.98 0.00 0.00 1.82
2158 2196 5.479375 TCCAGGTTGTACAAGGAAGTAGTAG 59.521 44.000 8.98 0.00 0.00 2.57
2159 2197 5.245526 CCAGGTTGTACAAGGAAGTAGTAGT 59.754 44.000 8.98 0.00 0.00 2.73
2160 2198 6.239515 CCAGGTTGTACAAGGAAGTAGTAGTT 60.240 42.308 8.98 0.00 0.00 2.24
2161 2199 7.215085 CAGGTTGTACAAGGAAGTAGTAGTTT 58.785 38.462 8.98 0.00 0.00 2.66
2162 2200 8.362639 CAGGTTGTACAAGGAAGTAGTAGTTTA 58.637 37.037 8.98 0.00 0.00 2.01
2163 2201 8.927411 AGGTTGTACAAGGAAGTAGTAGTTTAA 58.073 33.333 8.98 0.00 0.00 1.52
2164 2202 9.546428 GGTTGTACAAGGAAGTAGTAGTTTAAA 57.454 33.333 8.98 0.00 0.00 1.52
2166 2204 9.768662 TTGTACAAGGAAGTAGTAGTTTAAAGG 57.231 33.333 3.59 0.00 0.00 3.11
2167 2205 9.146586 TGTACAAGGAAGTAGTAGTTTAAAGGA 57.853 33.333 0.00 0.00 0.00 3.36
2168 2206 9.636879 GTACAAGGAAGTAGTAGTTTAAAGGAG 57.363 37.037 0.00 0.00 0.00 3.69
2169 2207 7.677892 ACAAGGAAGTAGTAGTTTAAAGGAGG 58.322 38.462 0.00 0.00 0.00 4.30
2170 2208 7.511714 ACAAGGAAGTAGTAGTTTAAAGGAGGA 59.488 37.037 0.00 0.00 0.00 3.71
2171 2209 7.721409 AGGAAGTAGTAGTTTAAAGGAGGAG 57.279 40.000 0.00 0.00 0.00 3.69
2172 2210 7.477008 AGGAAGTAGTAGTTTAAAGGAGGAGA 58.523 38.462 0.00 0.00 0.00 3.71
2173 2211 7.616542 AGGAAGTAGTAGTTTAAAGGAGGAGAG 59.383 40.741 0.00 0.00 0.00 3.20
2174 2212 7.147863 GGAAGTAGTAGTTTAAAGGAGGAGAGG 60.148 44.444 0.00 0.00 0.00 3.69
2175 2213 5.657745 AGTAGTAGTTTAAAGGAGGAGAGGC 59.342 44.000 0.00 0.00 0.00 4.70
2176 2214 4.426704 AGTAGTTTAAAGGAGGAGAGGCA 58.573 43.478 0.00 0.00 0.00 4.75
2177 2215 3.990959 AGTTTAAAGGAGGAGAGGCAG 57.009 47.619 0.00 0.00 0.00 4.85
2178 2216 3.521727 AGTTTAAAGGAGGAGAGGCAGA 58.478 45.455 0.00 0.00 0.00 4.26
2179 2217 4.107820 AGTTTAAAGGAGGAGAGGCAGAT 58.892 43.478 0.00 0.00 0.00 2.90
2180 2218 5.281314 AGTTTAAAGGAGGAGAGGCAGATA 58.719 41.667 0.00 0.00 0.00 1.98
2181 2219 5.726793 AGTTTAAAGGAGGAGAGGCAGATAA 59.273 40.000 0.00 0.00 0.00 1.75
2182 2220 6.215636 AGTTTAAAGGAGGAGAGGCAGATAAA 59.784 38.462 0.00 0.00 0.00 1.40
2183 2221 6.636454 TTAAAGGAGGAGAGGCAGATAAAA 57.364 37.500 0.00 0.00 0.00 1.52
2184 2222 4.495690 AAGGAGGAGAGGCAGATAAAAC 57.504 45.455 0.00 0.00 0.00 2.43
2185 2223 2.432510 AGGAGGAGAGGCAGATAAAACG 59.567 50.000 0.00 0.00 0.00 3.60
2186 2224 2.431057 GGAGGAGAGGCAGATAAAACGA 59.569 50.000 0.00 0.00 0.00 3.85
2187 2225 3.070302 GGAGGAGAGGCAGATAAAACGAT 59.930 47.826 0.00 0.00 0.00 3.73
2188 2226 4.054671 GAGGAGAGGCAGATAAAACGATG 58.945 47.826 0.00 0.00 0.00 3.84
2189 2227 3.452627 AGGAGAGGCAGATAAAACGATGT 59.547 43.478 0.00 0.00 0.00 3.06
2190 2228 3.804873 GGAGAGGCAGATAAAACGATGTC 59.195 47.826 0.00 0.00 0.00 3.06
2191 2229 4.442192 GGAGAGGCAGATAAAACGATGTCT 60.442 45.833 0.00 0.00 0.00 3.41
2192 2230 4.688021 AGAGGCAGATAAAACGATGTCTC 58.312 43.478 0.00 0.00 43.18 3.36
2193 2231 3.798202 AGGCAGATAAAACGATGTCTCC 58.202 45.455 0.00 0.00 0.00 3.71
2194 2232 3.197766 AGGCAGATAAAACGATGTCTCCA 59.802 43.478 0.00 0.00 0.00 3.86
2195 2233 3.938963 GGCAGATAAAACGATGTCTCCAA 59.061 43.478 0.00 0.00 0.00 3.53
2196 2234 4.034510 GGCAGATAAAACGATGTCTCCAAG 59.965 45.833 0.00 0.00 0.00 3.61
2197 2235 4.034510 GCAGATAAAACGATGTCTCCAAGG 59.965 45.833 0.00 0.00 0.00 3.61
2198 2236 5.419542 CAGATAAAACGATGTCTCCAAGGA 58.580 41.667 0.00 0.00 0.00 3.36
2199 2237 5.521735 CAGATAAAACGATGTCTCCAAGGAG 59.478 44.000 9.90 9.90 43.21 3.69
2210 2248 3.309296 TCTCCAAGGAGAAGAACAGTGT 58.691 45.455 16.19 0.00 46.89 3.55
2211 2249 3.322254 TCTCCAAGGAGAAGAACAGTGTC 59.678 47.826 16.19 0.00 46.89 3.67
2212 2250 2.368875 TCCAAGGAGAAGAACAGTGTCC 59.631 50.000 0.00 0.00 0.00 4.02
2213 2251 2.104792 CCAAGGAGAAGAACAGTGTCCA 59.895 50.000 0.00 0.00 0.00 4.02
2214 2252 3.134458 CAAGGAGAAGAACAGTGTCCAC 58.866 50.000 0.00 0.00 0.00 4.02
2215 2253 2.398588 AGGAGAAGAACAGTGTCCACA 58.601 47.619 0.00 0.00 0.00 4.17
2216 2254 2.771943 AGGAGAAGAACAGTGTCCACAA 59.228 45.455 0.00 0.00 0.00 3.33
2217 2255 3.199946 AGGAGAAGAACAGTGTCCACAAA 59.800 43.478 0.00 0.00 0.00 2.83
2218 2256 3.312697 GGAGAAGAACAGTGTCCACAAAC 59.687 47.826 0.00 0.00 0.00 2.93
2219 2257 3.938963 GAGAAGAACAGTGTCCACAAACA 59.061 43.478 0.00 0.00 0.00 2.83
2220 2258 4.526970 AGAAGAACAGTGTCCACAAACAT 58.473 39.130 0.00 0.00 0.00 2.71
2221 2259 4.576463 AGAAGAACAGTGTCCACAAACATC 59.424 41.667 0.00 0.00 0.00 3.06
2222 2260 2.872245 AGAACAGTGTCCACAAACATCG 59.128 45.455 0.00 0.00 0.00 3.84
2223 2261 2.325583 ACAGTGTCCACAAACATCGT 57.674 45.000 0.00 0.00 0.00 3.73
2224 2262 2.639065 ACAGTGTCCACAAACATCGTT 58.361 42.857 0.00 0.00 0.00 3.85
2225 2263 3.799366 ACAGTGTCCACAAACATCGTTA 58.201 40.909 0.00 0.00 0.00 3.18
2226 2264 4.385825 ACAGTGTCCACAAACATCGTTAT 58.614 39.130 0.00 0.00 0.00 1.89
2227 2265 4.451096 ACAGTGTCCACAAACATCGTTATC 59.549 41.667 0.00 0.00 0.00 1.75
2228 2266 3.678072 AGTGTCCACAAACATCGTTATCG 59.322 43.478 0.00 0.00 38.55 2.92
2243 2281 6.642683 TCGTTATCGACAAGAAAAAGATCC 57.357 37.500 0.00 0.00 41.35 3.36
2244 2282 6.160684 TCGTTATCGACAAGAAAAAGATCCA 58.839 36.000 0.00 0.00 41.35 3.41
2245 2283 6.310467 TCGTTATCGACAAGAAAAAGATCCAG 59.690 38.462 0.00 0.00 41.35 3.86
2246 2284 4.954092 ATCGACAAGAAAAAGATCCAGC 57.046 40.909 0.00 0.00 0.00 4.85
2247 2285 4.008074 TCGACAAGAAAAAGATCCAGCT 57.992 40.909 0.00 0.00 0.00 4.24
2248 2286 5.147330 TCGACAAGAAAAAGATCCAGCTA 57.853 39.130 0.00 0.00 0.00 3.32
2249 2287 5.171476 TCGACAAGAAAAAGATCCAGCTAG 58.829 41.667 0.00 0.00 0.00 3.42
2250 2288 4.331168 CGACAAGAAAAAGATCCAGCTAGG 59.669 45.833 0.00 0.00 39.47 3.02
2251 2289 4.013050 ACAAGAAAAAGATCCAGCTAGGC 58.987 43.478 0.00 0.00 37.29 3.93
2252 2290 4.263683 ACAAGAAAAAGATCCAGCTAGGCT 60.264 41.667 0.00 0.00 40.77 4.58
2253 2291 4.582973 AGAAAAAGATCCAGCTAGGCTT 57.417 40.909 0.00 0.00 36.40 4.35
2254 2292 4.928263 AGAAAAAGATCCAGCTAGGCTTT 58.072 39.130 0.00 0.00 36.40 3.51
2255 2293 4.946772 AGAAAAAGATCCAGCTAGGCTTTC 59.053 41.667 0.00 0.00 36.40 2.62
2256 2294 2.611225 AAGATCCAGCTAGGCTTTCG 57.389 50.000 0.00 0.00 36.40 3.46
2257 2295 0.105778 AGATCCAGCTAGGCTTTCGC 59.894 55.000 0.00 0.00 36.40 4.70
2267 2305 2.819595 GCTTTCGCCGATGCTCCA 60.820 61.111 5.54 0.00 34.43 3.86
2268 2306 2.398554 GCTTTCGCCGATGCTCCAA 61.399 57.895 5.54 0.00 34.43 3.53
2269 2307 1.425428 CTTTCGCCGATGCTCCAAC 59.575 57.895 0.00 0.00 34.43 3.77
2270 2308 1.982073 CTTTCGCCGATGCTCCAACC 61.982 60.000 0.00 0.00 34.43 3.77
2271 2309 2.463589 TTTCGCCGATGCTCCAACCT 62.464 55.000 0.00 0.00 34.43 3.50
2272 2310 2.852495 TTCGCCGATGCTCCAACCTC 62.852 60.000 0.00 0.00 34.43 3.85
2273 2311 2.514824 GCCGATGCTCCAACCTCC 60.515 66.667 0.00 0.00 33.53 4.30
2274 2312 2.989639 CCGATGCTCCAACCTCCA 59.010 61.111 0.00 0.00 0.00 3.86
2275 2313 1.299648 CCGATGCTCCAACCTCCAA 59.700 57.895 0.00 0.00 0.00 3.53
2276 2314 1.026718 CCGATGCTCCAACCTCCAAC 61.027 60.000 0.00 0.00 0.00 3.77
2277 2315 1.361668 CGATGCTCCAACCTCCAACG 61.362 60.000 0.00 0.00 0.00 4.10
2278 2316 1.648467 GATGCTCCAACCTCCAACGC 61.648 60.000 0.00 0.00 0.00 4.84
2279 2317 2.032681 GCTCCAACCTCCAACGCT 59.967 61.111 0.00 0.00 0.00 5.07
2280 2318 2.328099 GCTCCAACCTCCAACGCTG 61.328 63.158 0.00 0.00 0.00 5.18
2281 2319 1.672356 CTCCAACCTCCAACGCTGG 60.672 63.158 0.00 0.00 45.08 4.85
2289 2327 4.598257 CCAACGCTGGAGACGATT 57.402 55.556 0.00 0.00 46.92 3.34
2290 2328 2.081526 CCAACGCTGGAGACGATTG 58.918 57.895 0.00 0.00 46.92 2.67
2291 2329 0.670546 CCAACGCTGGAGACGATTGT 60.671 55.000 0.00 0.00 46.92 2.71
2292 2330 1.403647 CCAACGCTGGAGACGATTGTA 60.404 52.381 0.00 0.00 46.92 2.41
2293 2331 1.920574 CAACGCTGGAGACGATTGTAG 59.079 52.381 0.00 0.00 0.00 2.74
2294 2332 1.460504 ACGCTGGAGACGATTGTAGA 58.539 50.000 0.00 0.00 0.00 2.59
2295 2333 1.132643 ACGCTGGAGACGATTGTAGAC 59.867 52.381 0.00 0.00 0.00 2.59
2296 2334 1.132453 CGCTGGAGACGATTGTAGACA 59.868 52.381 0.00 0.00 0.00 3.41
2297 2335 2.415491 CGCTGGAGACGATTGTAGACAA 60.415 50.000 0.00 0.00 40.51 3.18
2298 2336 2.924290 GCTGGAGACGATTGTAGACAAC 59.076 50.000 0.00 0.00 38.86 3.32
2299 2337 3.512680 CTGGAGACGATTGTAGACAACC 58.487 50.000 0.00 0.00 38.86 3.77
2300 2338 2.894765 TGGAGACGATTGTAGACAACCA 59.105 45.455 0.00 0.00 38.86 3.67
2301 2339 3.251571 GGAGACGATTGTAGACAACCAC 58.748 50.000 0.00 0.00 38.86 4.16
2302 2340 3.056749 GGAGACGATTGTAGACAACCACT 60.057 47.826 0.00 0.00 38.86 4.00
2303 2341 3.914312 AGACGATTGTAGACAACCACTG 58.086 45.455 0.00 0.00 38.86 3.66
2304 2342 3.572682 AGACGATTGTAGACAACCACTGA 59.427 43.478 0.00 0.00 38.86 3.41
2305 2343 4.220821 AGACGATTGTAGACAACCACTGAT 59.779 41.667 0.00 0.00 38.86 2.90
2306 2344 4.495422 ACGATTGTAGACAACCACTGATC 58.505 43.478 0.00 0.00 38.86 2.92
2307 2345 4.021456 ACGATTGTAGACAACCACTGATCA 60.021 41.667 0.00 0.00 38.86 2.92
2308 2346 4.327357 CGATTGTAGACAACCACTGATCAC 59.673 45.833 0.00 0.00 38.86 3.06
2309 2347 4.681074 TTGTAGACAACCACTGATCACA 57.319 40.909 0.00 0.00 0.00 3.58
2310 2348 3.990092 TGTAGACAACCACTGATCACAC 58.010 45.455 0.00 0.00 0.00 3.82
2311 2349 3.641436 TGTAGACAACCACTGATCACACT 59.359 43.478 0.00 0.00 0.00 3.55
2312 2350 3.845781 AGACAACCACTGATCACACTT 57.154 42.857 0.00 0.00 0.00 3.16
2313 2351 3.470709 AGACAACCACTGATCACACTTG 58.529 45.455 0.00 0.00 0.00 3.16
2314 2352 3.134623 AGACAACCACTGATCACACTTGA 59.865 43.478 0.00 0.00 35.73 3.02
2315 2353 4.067896 GACAACCACTGATCACACTTGAT 58.932 43.478 0.00 0.00 45.78 2.57
2316 2354 3.817084 ACAACCACTGATCACACTTGATG 59.183 43.478 0.00 0.00 42.95 3.07
2317 2355 3.063510 ACCACTGATCACACTTGATGG 57.936 47.619 0.00 0.00 42.95 3.51
2318 2356 2.639347 ACCACTGATCACACTTGATGGA 59.361 45.455 0.00 0.00 42.95 3.41
2319 2357 3.072915 ACCACTGATCACACTTGATGGAA 59.927 43.478 0.00 0.00 42.95 3.53
2320 2358 3.438087 CCACTGATCACACTTGATGGAAC 59.562 47.826 0.00 0.00 42.95 3.62
2321 2359 3.438087 CACTGATCACACTTGATGGAACC 59.562 47.826 0.00 0.00 42.95 3.62
2322 2360 3.328931 ACTGATCACACTTGATGGAACCT 59.671 43.478 0.00 0.00 42.95 3.50
2323 2361 3.678289 TGATCACACTTGATGGAACCTG 58.322 45.455 0.00 0.00 42.95 4.00
2324 2362 2.566833 TCACACTTGATGGAACCTGG 57.433 50.000 0.00 0.00 0.00 4.45
2325 2363 0.883833 CACACTTGATGGAACCTGGC 59.116 55.000 0.00 0.00 0.00 4.85
2326 2364 0.478072 ACACTTGATGGAACCTGGCA 59.522 50.000 0.00 0.00 0.00 4.92
2327 2365 1.133513 ACACTTGATGGAACCTGGCAA 60.134 47.619 0.00 0.00 0.00 4.52
2328 2366 1.542915 CACTTGATGGAACCTGGCAAG 59.457 52.381 14.23 14.23 41.15 4.01
2329 2367 1.145738 ACTTGATGGAACCTGGCAAGT 59.854 47.619 15.08 15.08 42.92 3.16
2330 2368 1.542915 CTTGATGGAACCTGGCAAGTG 59.457 52.381 0.00 0.00 33.22 3.16
2331 2369 0.251297 TGATGGAACCTGGCAAGTGG 60.251 55.000 0.00 0.00 0.00 4.00
2332 2370 0.967380 GATGGAACCTGGCAAGTGGG 60.967 60.000 0.00 0.00 0.00 4.61
2333 2371 1.729267 ATGGAACCTGGCAAGTGGGT 61.729 55.000 0.00 0.00 34.47 4.51
2334 2372 1.903404 GGAACCTGGCAAGTGGGTG 60.903 63.158 0.00 0.00 33.20 4.61
2335 2373 1.150536 GAACCTGGCAAGTGGGTGA 59.849 57.895 0.00 0.00 33.20 4.02
2336 2374 0.251341 GAACCTGGCAAGTGGGTGAT 60.251 55.000 0.00 0.00 33.20 3.06
2337 2375 1.004277 GAACCTGGCAAGTGGGTGATA 59.996 52.381 0.00 0.00 33.20 2.15
2338 2376 0.328258 ACCTGGCAAGTGGGTGATAC 59.672 55.000 0.00 0.00 31.48 2.24
2339 2377 0.394352 CCTGGCAAGTGGGTGATACC 60.394 60.000 0.00 0.00 37.60 2.73
2340 2378 0.620556 CTGGCAAGTGGGTGATACCT 59.379 55.000 0.00 0.00 38.64 3.08
2341 2379 0.618458 TGGCAAGTGGGTGATACCTC 59.382 55.000 0.00 0.00 38.64 3.85
2342 2380 0.618458 GGCAAGTGGGTGATACCTCA 59.382 55.000 0.00 0.00 38.64 3.86
2343 2381 1.407437 GGCAAGTGGGTGATACCTCAG 60.407 57.143 0.00 0.00 38.64 3.35
2344 2382 2.014068 GCAAGTGGGTGATACCTCAGC 61.014 57.143 0.00 0.00 46.81 4.26
2348 2386 3.495380 GTGGGTGATACCTCAGCGACC 62.495 61.905 8.24 0.00 46.59 4.79
2349 2387 1.442148 GGTGATACCTCAGCGACCC 59.558 63.158 0.00 0.00 39.85 4.46
2350 2388 1.327690 GGTGATACCTCAGCGACCCA 61.328 60.000 0.00 0.00 39.85 4.51
2351 2389 0.753262 GTGATACCTCAGCGACCCAT 59.247 55.000 0.00 0.00 30.18 4.00
2352 2390 0.752658 TGATACCTCAGCGACCCATG 59.247 55.000 0.00 0.00 0.00 3.66
2353 2391 0.753262 GATACCTCAGCGACCCATGT 59.247 55.000 0.00 0.00 0.00 3.21
2354 2392 0.465705 ATACCTCAGCGACCCATGTG 59.534 55.000 0.00 0.00 0.00 3.21
2355 2393 1.613317 TACCTCAGCGACCCATGTGG 61.613 60.000 0.00 0.00 41.37 4.17
2356 2394 2.821366 CTCAGCGACCCATGTGGC 60.821 66.667 0.00 0.00 45.55 5.01
2360 2398 3.520862 GCGACCCATGTGGCATGG 61.521 66.667 18.43 18.43 44.68 3.66
2361 2399 3.520862 CGACCCATGTGGCATGGC 61.521 66.667 19.60 13.29 37.85 4.40
2362 2400 2.362760 GACCCATGTGGCATGGCA 60.363 61.111 19.43 19.43 37.85 4.92
2363 2401 1.983481 GACCCATGTGGCATGGCAA 60.983 57.895 25.11 14.44 37.85 4.52
2364 2402 2.229690 GACCCATGTGGCATGGCAAC 62.230 60.000 25.11 17.70 37.85 4.17
2365 2403 2.182284 CCATGTGGCATGGCAACG 59.818 61.111 25.11 14.52 34.77 4.10
2366 2404 2.341875 CCATGTGGCATGGCAACGA 61.342 57.895 25.11 11.35 34.77 3.85
2367 2405 1.669049 CCATGTGGCATGGCAACGAT 61.669 55.000 25.11 13.20 34.77 3.73
2368 2406 0.248743 CATGTGGCATGGCAACGATC 60.249 55.000 25.11 11.69 34.77 3.69
2369 2407 1.386525 ATGTGGCATGGCAACGATCC 61.387 55.000 25.11 10.92 34.77 3.36
2370 2408 1.750399 GTGGCATGGCAACGATCCT 60.750 57.895 25.11 0.00 42.51 3.24
2371 2409 0.463654 GTGGCATGGCAACGATCCTA 60.464 55.000 25.11 0.00 42.51 2.94
2372 2410 0.179048 TGGCATGGCAACGATCCTAG 60.179 55.000 21.13 0.00 42.51 3.02
2373 2411 1.510480 GGCATGGCAACGATCCTAGC 61.510 60.000 15.47 0.00 42.51 3.42
2374 2412 0.815213 GCATGGCAACGATCCTAGCA 60.815 55.000 0.00 0.00 42.51 3.49
2375 2413 1.667236 CATGGCAACGATCCTAGCAA 58.333 50.000 0.00 0.00 42.51 3.91
2376 2414 2.016318 CATGGCAACGATCCTAGCAAA 58.984 47.619 0.00 0.00 42.51 3.68
2377 2415 1.448985 TGGCAACGATCCTAGCAAAC 58.551 50.000 0.00 0.00 42.51 2.93
2378 2416 0.733150 GGCAACGATCCTAGCAAACC 59.267 55.000 0.00 0.00 0.00 3.27
2379 2417 0.733150 GCAACGATCCTAGCAAACCC 59.267 55.000 0.00 0.00 0.00 4.11
2380 2418 1.379527 CAACGATCCTAGCAAACCCC 58.620 55.000 0.00 0.00 0.00 4.95
2381 2419 0.255033 AACGATCCTAGCAAACCCCC 59.745 55.000 0.00 0.00 0.00 5.40
2382 2420 0.912487 ACGATCCTAGCAAACCCCCA 60.912 55.000 0.00 0.00 0.00 4.96
2383 2421 0.179045 CGATCCTAGCAAACCCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
2384 2422 1.213296 GATCCTAGCAAACCCCCAGA 58.787 55.000 0.00 0.00 0.00 3.86
2385 2423 1.777272 GATCCTAGCAAACCCCCAGAT 59.223 52.381 0.00 0.00 0.00 2.90
2386 2424 1.213296 TCCTAGCAAACCCCCAGATC 58.787 55.000 0.00 0.00 0.00 2.75
2387 2425 0.183731 CCTAGCAAACCCCCAGATCC 59.816 60.000 0.00 0.00 0.00 3.36
2388 2426 0.183731 CTAGCAAACCCCCAGATCCC 59.816 60.000 0.00 0.00 0.00 3.85
2389 2427 1.632018 TAGCAAACCCCCAGATCCCG 61.632 60.000 0.00 0.00 0.00 5.14
2390 2428 2.978946 GCAAACCCCCAGATCCCGA 61.979 63.158 0.00 0.00 0.00 5.14
2391 2429 1.224592 CAAACCCCCAGATCCCGAG 59.775 63.158 0.00 0.00 0.00 4.63
2392 2430 1.082206 AAACCCCCAGATCCCGAGA 59.918 57.895 0.00 0.00 0.00 4.04
2393 2431 0.327576 AAACCCCCAGATCCCGAGAT 60.328 55.000 0.00 0.00 34.57 2.75
2394 2432 1.056700 AACCCCCAGATCCCGAGATG 61.057 60.000 0.00 0.00 30.90 2.90
2395 2433 1.152247 CCCCCAGATCCCGAGATGA 60.152 63.158 0.00 0.00 30.90 2.92
2396 2434 1.476007 CCCCCAGATCCCGAGATGAC 61.476 65.000 0.00 0.00 30.90 3.06
2397 2435 1.476007 CCCCAGATCCCGAGATGACC 61.476 65.000 0.00 0.00 30.90 4.02
2398 2436 0.470833 CCCAGATCCCGAGATGACCT 60.471 60.000 0.00 0.00 30.90 3.85
2399 2437 1.418334 CCAGATCCCGAGATGACCTT 58.582 55.000 0.00 0.00 30.90 3.50
2400 2438 1.342819 CCAGATCCCGAGATGACCTTC 59.657 57.143 0.00 0.00 30.90 3.46
2401 2439 1.342819 CAGATCCCGAGATGACCTTCC 59.657 57.143 0.00 0.00 30.90 3.46
2402 2440 0.682292 GATCCCGAGATGACCTTCCC 59.318 60.000 0.00 0.00 30.90 3.97
2403 2441 0.031111 ATCCCGAGATGACCTTCCCA 60.031 55.000 0.00 0.00 0.00 4.37
2404 2442 0.252513 TCCCGAGATGACCTTCCCAA 60.253 55.000 0.00 0.00 0.00 4.12
2405 2443 0.839946 CCCGAGATGACCTTCCCAAT 59.160 55.000 0.00 0.00 0.00 3.16
2406 2444 1.202698 CCCGAGATGACCTTCCCAATC 60.203 57.143 0.00 0.00 0.00 2.67
2407 2445 1.486310 CCGAGATGACCTTCCCAATCA 59.514 52.381 0.00 0.00 0.00 2.57
2408 2446 2.092968 CCGAGATGACCTTCCCAATCAA 60.093 50.000 0.00 0.00 0.00 2.57
2409 2447 3.201290 CGAGATGACCTTCCCAATCAAG 58.799 50.000 0.00 0.00 0.00 3.02
2410 2448 3.118629 CGAGATGACCTTCCCAATCAAGA 60.119 47.826 0.00 0.00 0.00 3.02
2411 2449 4.623886 CGAGATGACCTTCCCAATCAAGAA 60.624 45.833 0.00 0.00 0.00 2.52
2412 2450 4.853007 AGATGACCTTCCCAATCAAGAAG 58.147 43.478 0.00 0.00 39.38 2.85
2413 2451 2.795329 TGACCTTCCCAATCAAGAAGC 58.205 47.619 0.00 0.00 38.53 3.86
2414 2452 2.108075 TGACCTTCCCAATCAAGAAGCA 59.892 45.455 0.00 0.00 38.53 3.91
2415 2453 2.489722 GACCTTCCCAATCAAGAAGCAC 59.510 50.000 0.00 0.00 38.53 4.40
2416 2454 1.470098 CCTTCCCAATCAAGAAGCACG 59.530 52.381 0.00 0.00 38.53 5.34
2417 2455 0.881118 TTCCCAATCAAGAAGCACGC 59.119 50.000 0.00 0.00 0.00 5.34
2418 2456 0.036732 TCCCAATCAAGAAGCACGCT 59.963 50.000 0.00 0.00 0.00 5.07
2419 2457 0.169672 CCCAATCAAGAAGCACGCTG 59.830 55.000 0.00 0.00 0.00 5.18
2420 2458 0.877071 CCAATCAAGAAGCACGCTGT 59.123 50.000 0.00 0.00 0.00 4.40
2421 2459 1.135859 CCAATCAAGAAGCACGCTGTC 60.136 52.381 0.00 0.00 0.00 3.51
2422 2460 1.802960 CAATCAAGAAGCACGCTGTCT 59.197 47.619 0.00 0.00 0.00 3.41
2423 2461 2.995939 CAATCAAGAAGCACGCTGTCTA 59.004 45.455 0.00 0.00 0.00 2.59
2424 2462 2.812358 TCAAGAAGCACGCTGTCTAA 57.188 45.000 0.00 0.00 0.00 2.10
2425 2463 3.106242 TCAAGAAGCACGCTGTCTAAA 57.894 42.857 0.00 0.00 0.00 1.85
2426 2464 3.462982 TCAAGAAGCACGCTGTCTAAAA 58.537 40.909 0.00 0.00 0.00 1.52
2427 2465 3.494626 TCAAGAAGCACGCTGTCTAAAAG 59.505 43.478 0.00 0.00 0.00 2.27
2428 2466 3.386768 AGAAGCACGCTGTCTAAAAGA 57.613 42.857 0.00 0.00 0.00 2.52
2429 2467 3.728845 AGAAGCACGCTGTCTAAAAGAA 58.271 40.909 0.00 0.00 0.00 2.52
2430 2468 3.743396 AGAAGCACGCTGTCTAAAAGAAG 59.257 43.478 0.00 0.00 0.00 2.85
2431 2469 1.801178 AGCACGCTGTCTAAAAGAAGC 59.199 47.619 0.00 0.00 0.00 3.86
2432 2470 1.531149 GCACGCTGTCTAAAAGAAGCA 59.469 47.619 9.90 0.00 32.02 3.91
2433 2471 2.032030 GCACGCTGTCTAAAAGAAGCAA 60.032 45.455 9.90 0.00 32.02 3.91
2434 2472 3.548014 GCACGCTGTCTAAAAGAAGCAAA 60.548 43.478 9.90 0.00 32.02 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 146 2.915869 TCACTTCCCCAGGAGTAATGT 58.084 47.619 0.00 0.00 31.21 2.71
154 155 4.935352 TTCACATTTTTCACTTCCCCAG 57.065 40.909 0.00 0.00 0.00 4.45
155 156 4.502950 GCATTCACATTTTTCACTTCCCCA 60.503 41.667 0.00 0.00 0.00 4.96
157 158 3.996363 GGCATTCACATTTTTCACTTCCC 59.004 43.478 0.00 0.00 0.00 3.97
159 160 5.580911 GTGGCATTCACATTTTTCACTTC 57.419 39.130 0.00 0.00 45.39 3.01
172 173 2.223688 CGTTCTTTTGTGGTGGCATTCA 60.224 45.455 0.00 0.00 0.00 2.57
176 177 0.736053 GACGTTCTTTTGTGGTGGCA 59.264 50.000 0.00 0.00 0.00 4.92
192 193 1.145759 ACACGCACTTCACTGTGACG 61.146 55.000 10.56 11.47 40.12 4.35
209 210 8.079211 ACATCAGAAATAACTAGAGGCTAACA 57.921 34.615 0.00 0.00 0.00 2.41
227 228 6.239036 CCGTCCACATATTAGAGAACATCAGA 60.239 42.308 0.00 0.00 0.00 3.27
230 231 4.686554 GCCGTCCACATATTAGAGAACATC 59.313 45.833 0.00 0.00 0.00 3.06
363 364 4.380531 GTGTGTGGAGATCAGTGAGAAAA 58.619 43.478 0.00 0.00 0.00 2.29
371 372 1.000843 TGGTTCGTGTGTGGAGATCAG 59.999 52.381 0.00 0.00 0.00 2.90
513 514 2.080286 TCCTAACTTTCTCAGCGTGC 57.920 50.000 0.00 0.00 0.00 5.34
627 628 4.996793 TCATGTGAGAAGATGGGGAAAAA 58.003 39.130 0.00 0.00 0.00 1.94
628 629 4.656100 TCATGTGAGAAGATGGGGAAAA 57.344 40.909 0.00 0.00 0.00 2.29
632 633 2.621998 GCAATCATGTGAGAAGATGGGG 59.378 50.000 0.00 0.00 0.00 4.96
634 635 4.035324 GTCAGCAATCATGTGAGAAGATGG 59.965 45.833 0.00 0.00 0.00 3.51
683 684 5.294306 TGGATCGAGATCATGCTTGTTAAAC 59.706 40.000 14.21 0.00 39.54 2.01
852 853 4.434520 CCCTTTTTGCTTTTACGTTGGAA 58.565 39.130 0.00 0.00 0.00 3.53
860 861 5.352846 GTGTCTTTTGCCCTTTTTGCTTTTA 59.647 36.000 0.00 0.00 0.00 1.52
863 864 3.270027 GTGTCTTTTGCCCTTTTTGCTT 58.730 40.909 0.00 0.00 0.00 3.91
864 865 2.235898 TGTGTCTTTTGCCCTTTTTGCT 59.764 40.909 0.00 0.00 0.00 3.91
865 866 2.626840 TGTGTCTTTTGCCCTTTTTGC 58.373 42.857 0.00 0.00 0.00 3.68
866 867 4.440880 TCATGTGTCTTTTGCCCTTTTTG 58.559 39.130 0.00 0.00 0.00 2.44
877 878 5.794894 CTTAGTGGGTACTCATGTGTCTTT 58.205 41.667 0.00 0.00 38.36 2.52
881 882 2.903784 TGCTTAGTGGGTACTCATGTGT 59.096 45.455 0.00 5.63 38.36 3.72
886 887 4.530553 TGATCTTTGCTTAGTGGGTACTCA 59.469 41.667 0.00 0.00 38.36 3.41
887 888 5.086104 TGATCTTTGCTTAGTGGGTACTC 57.914 43.478 0.00 0.00 38.36 2.59
888 889 5.675538 GATGATCTTTGCTTAGTGGGTACT 58.324 41.667 0.00 0.00 40.99 2.73
889 890 4.508124 CGATGATCTTTGCTTAGTGGGTAC 59.492 45.833 0.00 0.00 0.00 3.34
890 891 4.404394 TCGATGATCTTTGCTTAGTGGGTA 59.596 41.667 0.00 0.00 0.00 3.69
891 892 3.197766 TCGATGATCTTTGCTTAGTGGGT 59.802 43.478 0.00 0.00 0.00 4.51
892 893 3.797039 TCGATGATCTTTGCTTAGTGGG 58.203 45.455 0.00 0.00 0.00 4.61
893 894 5.295950 AGATCGATGATCTTTGCTTAGTGG 58.704 41.667 0.54 0.00 45.86 4.00
908 909 5.782893 ACTAGGAGAAAGGAAGATCGATG 57.217 43.478 0.54 0.00 0.00 3.84
936 942 6.173427 TCTTGGCTAGATGTATTGCATGTA 57.827 37.500 0.00 0.00 38.06 2.29
951 957 2.554344 GGGTGTTGTTGGATCTTGGCTA 60.554 50.000 0.00 0.00 0.00 3.93
990 1006 1.808411 TGAACGCCATTCTCAACTCC 58.192 50.000 0.00 0.00 38.25 3.85
1105 1123 0.844503 GCGTTAAGCGACTCGTATGG 59.155 55.000 0.00 0.00 44.77 2.74
1190 1208 1.661821 GACAGTTCGTCGCAGCACT 60.662 57.895 0.00 0.00 34.19 4.40
1374 1392 2.344203 CCGCCCGAAGACAGTCTCT 61.344 63.158 2.72 0.00 0.00 3.10
1380 1398 1.546589 AATGGTACCGCCCGAAGACA 61.547 55.000 7.57 0.00 36.04 3.41
1401 1419 0.182537 CAGGATATTGGGTCGGGCAA 59.817 55.000 0.00 0.00 0.00 4.52
1555 1583 4.119862 GCCGCACATCTTAACAGAAGATA 58.880 43.478 0.00 0.00 35.39 1.98
1645 1673 2.842462 ACACCGAGGCACACTCCA 60.842 61.111 0.00 0.00 43.57 3.86
1646 1674 2.357517 CACACCGAGGCACACTCC 60.358 66.667 0.00 0.00 43.57 3.85
1650 1678 0.320334 CATACACACACCGAGGCACA 60.320 55.000 0.00 0.00 0.00 4.57
1654 1682 1.220749 CCCCATACACACACCGAGG 59.779 63.158 0.00 0.00 0.00 4.63
1686 1717 2.352715 CGTGCACAACATGGACTAGAGA 60.353 50.000 18.64 0.00 46.99 3.10
1724 1755 5.009710 TCTCTCATGTAACTCGTGACTTTGT 59.990 40.000 0.00 0.00 37.18 2.83
1728 1759 5.004448 TCTTCTCTCATGTAACTCGTGACT 58.996 41.667 0.00 0.00 37.18 3.41
1734 1765 7.570324 GCTTGTGTTTCTTCTCTCATGTAACTC 60.570 40.741 0.00 0.00 0.00 3.01
1755 1786 1.096386 TAACCAAACGCGGTGCTTGT 61.096 50.000 12.47 0.00 39.95 3.16
1757 1788 0.955905 ATTAACCAAACGCGGTGCTT 59.044 45.000 12.47 4.43 39.95 3.91
1763 1794 2.097637 GCACAAACATTAACCAAACGCG 60.098 45.455 3.53 3.53 0.00 6.01
1775 1806 1.747355 GCATCTAGGCAGCACAAACAT 59.253 47.619 0.00 0.00 0.00 2.71
1798 1830 6.980978 TGTACACATAACCAAACAACCAAATG 59.019 34.615 0.00 0.00 0.00 2.32
1799 1831 6.981559 GTGTACACATAACCAAACAACCAAAT 59.018 34.615 21.14 0.00 0.00 2.32
1811 1843 6.973474 GTGAGAGTATCAGTGTACACATAACC 59.027 42.308 27.06 11.96 39.07 2.85
1812 1844 6.973474 GGTGAGAGTATCAGTGTACACATAAC 59.027 42.308 27.06 17.88 39.07 1.89
1844 1880 8.388103 CGGTAAAGTAAGAAGTTCAACATATGG 58.612 37.037 7.80 0.00 0.00 2.74
1845 1881 9.146984 TCGGTAAAGTAAGAAGTTCAACATATG 57.853 33.333 5.50 0.00 0.00 1.78
1846 1882 9.715121 TTCGGTAAAGTAAGAAGTTCAACATAT 57.285 29.630 5.50 0.00 0.00 1.78
1847 1883 9.545105 TTTCGGTAAAGTAAGAAGTTCAACATA 57.455 29.630 5.50 0.00 0.00 2.29
1851 1887 9.165035 TCTTTTTCGGTAAAGTAAGAAGTTCAA 57.835 29.630 5.50 0.00 36.67 2.69
1870 1906 3.203161 AGCGAGGCGAAAATCTTTTTC 57.797 42.857 3.23 3.23 0.00 2.29
1871 1907 3.643159 AAGCGAGGCGAAAATCTTTTT 57.357 38.095 0.00 0.00 0.00 1.94
1873 1909 2.814336 AGAAAGCGAGGCGAAAATCTTT 59.186 40.909 0.00 0.00 0.00 2.52
1874 1910 2.427506 AGAAAGCGAGGCGAAAATCTT 58.572 42.857 0.00 0.00 0.00 2.40
1875 1911 2.100605 AGAAAGCGAGGCGAAAATCT 57.899 45.000 0.00 0.00 0.00 2.40
1876 1912 2.902065 AAGAAAGCGAGGCGAAAATC 57.098 45.000 0.00 0.00 0.00 2.17
1877 1913 2.293399 ACAAAGAAAGCGAGGCGAAAAT 59.707 40.909 0.00 0.00 0.00 1.82
1879 1915 1.305201 ACAAAGAAAGCGAGGCGAAA 58.695 45.000 0.00 0.00 0.00 3.46
1880 1916 2.066262 CTACAAAGAAAGCGAGGCGAA 58.934 47.619 0.00 0.00 0.00 4.70
1883 1919 5.728067 GCTTTATCTACAAAGAAAGCGAGGC 60.728 44.000 2.77 0.00 36.41 4.70
1884 1920 5.351465 TGCTTTATCTACAAAGAAAGCGAGG 59.649 40.000 12.12 0.00 43.81 4.63
1885 1921 6.408858 TGCTTTATCTACAAAGAAAGCGAG 57.591 37.500 12.12 0.00 43.81 5.03
1886 1922 6.599437 GTTGCTTTATCTACAAAGAAAGCGA 58.401 36.000 12.12 8.45 43.81 4.93
1887 1923 5.504755 CGTTGCTTTATCTACAAAGAAAGCG 59.495 40.000 12.12 0.20 43.81 4.68
1888 1924 5.795441 CCGTTGCTTTATCTACAAAGAAAGC 59.205 40.000 10.47 10.47 42.32 3.51
1889 1925 5.795441 GCCGTTGCTTTATCTACAAAGAAAG 59.205 40.000 0.00 0.00 34.41 2.62
1890 1926 5.335348 GGCCGTTGCTTTATCTACAAAGAAA 60.335 40.000 0.00 0.00 37.66 2.52
1891 1927 4.155280 GGCCGTTGCTTTATCTACAAAGAA 59.845 41.667 0.00 0.00 37.66 2.52
1892 1928 3.687698 GGCCGTTGCTTTATCTACAAAGA 59.312 43.478 0.00 0.00 37.66 2.52
1897 1933 1.930567 TCGGCCGTTGCTTTATCTAC 58.069 50.000 27.15 0.00 37.74 2.59
1900 1936 0.800012 TGTTCGGCCGTTGCTTTATC 59.200 50.000 27.15 3.33 37.74 1.75
1910 1946 0.165944 CTTTGTAAGCTGTTCGGCCG 59.834 55.000 22.12 22.12 0.00 6.13
1912 1948 3.242446 GCTATCTTTGTAAGCTGTTCGGC 60.242 47.826 0.00 0.00 33.40 5.54
1920 1956 3.623510 GGGTGTGAGCTATCTTTGTAAGC 59.376 47.826 0.00 0.00 36.48 3.09
1922 1958 4.041075 TGTGGGTGTGAGCTATCTTTGTAA 59.959 41.667 0.00 0.00 0.00 2.41
1930 1966 1.064003 TTGGTGTGGGTGTGAGCTAT 58.936 50.000 0.00 0.00 0.00 2.97
1953 1989 8.940397 ATATTGTAAACCTAGAATCCCCAATG 57.060 34.615 0.00 0.00 0.00 2.82
1968 2004 9.452287 TGGACCCTTTGTACTTATATTGTAAAC 57.548 33.333 0.00 0.00 0.00 2.01
1989 2025 1.351350 ACTAGGTTTCCTGCTTGGACC 59.649 52.381 0.00 0.00 46.14 4.46
1991 2027 4.103469 TGTTTACTAGGTTTCCTGCTTGGA 59.897 41.667 0.00 0.00 44.51 3.53
1993 2029 6.385649 TTTGTTTACTAGGTTTCCTGCTTG 57.614 37.500 0.00 0.00 34.61 4.01
1998 2036 7.412853 TTGCTTTTTGTTTACTAGGTTTCCT 57.587 32.000 0.00 0.00 37.71 3.36
1999 2037 6.200286 GCTTGCTTTTTGTTTACTAGGTTTCC 59.800 38.462 0.00 0.00 0.00 3.13
2002 2040 6.215495 TGCTTGCTTTTTGTTTACTAGGTT 57.785 33.333 0.00 0.00 0.00 3.50
2007 2045 6.983474 AACATTGCTTGCTTTTTGTTTACT 57.017 29.167 0.00 0.00 0.00 2.24
2008 2046 8.994881 GTTTAACATTGCTTGCTTTTTGTTTAC 58.005 29.630 0.00 0.00 0.00 2.01
2015 2053 8.940768 TCTTTAGTTTAACATTGCTTGCTTTT 57.059 26.923 0.00 0.00 0.00 2.27
2033 2071 9.021807 GGGCTCCTTTAGTTATTTTTCTTTAGT 57.978 33.333 0.00 0.00 0.00 2.24
2034 2072 9.020731 TGGGCTCCTTTAGTTATTTTTCTTTAG 57.979 33.333 0.00 0.00 0.00 1.85
2035 2073 8.799367 GTGGGCTCCTTTAGTTATTTTTCTTTA 58.201 33.333 0.00 0.00 0.00 1.85
2036 2074 7.509318 AGTGGGCTCCTTTAGTTATTTTTCTTT 59.491 33.333 0.00 0.00 0.00 2.52
2037 2075 7.010771 AGTGGGCTCCTTTAGTTATTTTTCTT 58.989 34.615 0.00 0.00 0.00 2.52
2038 2076 6.552932 AGTGGGCTCCTTTAGTTATTTTTCT 58.447 36.000 0.00 0.00 0.00 2.52
2039 2077 6.835819 AGTGGGCTCCTTTAGTTATTTTTC 57.164 37.500 0.00 0.00 0.00 2.29
2040 2078 6.780522 TCAAGTGGGCTCCTTTAGTTATTTTT 59.219 34.615 0.00 0.00 0.00 1.94
2041 2079 6.311735 TCAAGTGGGCTCCTTTAGTTATTTT 58.688 36.000 0.00 0.00 0.00 1.82
2042 2080 5.887754 TCAAGTGGGCTCCTTTAGTTATTT 58.112 37.500 0.00 0.00 0.00 1.40
2043 2081 5.514500 TCAAGTGGGCTCCTTTAGTTATT 57.486 39.130 0.00 0.00 0.00 1.40
2044 2082 5.430089 AGATCAAGTGGGCTCCTTTAGTTAT 59.570 40.000 0.00 0.00 0.00 1.89
2045 2083 4.783227 AGATCAAGTGGGCTCCTTTAGTTA 59.217 41.667 0.00 0.00 0.00 2.24
2046 2084 3.589288 AGATCAAGTGGGCTCCTTTAGTT 59.411 43.478 0.00 0.00 0.00 2.24
2047 2085 3.185455 AGATCAAGTGGGCTCCTTTAGT 58.815 45.455 0.00 0.00 0.00 2.24
2048 2086 3.922171 AGATCAAGTGGGCTCCTTTAG 57.078 47.619 0.00 0.00 0.00 1.85
2049 2087 3.587061 TCAAGATCAAGTGGGCTCCTTTA 59.413 43.478 0.00 0.00 0.00 1.85
2050 2088 2.376518 TCAAGATCAAGTGGGCTCCTTT 59.623 45.455 0.00 0.00 0.00 3.11
2051 2089 1.988107 TCAAGATCAAGTGGGCTCCTT 59.012 47.619 0.00 0.00 0.00 3.36
2052 2090 1.280421 GTCAAGATCAAGTGGGCTCCT 59.720 52.381 0.00 0.00 0.00 3.69
2053 2091 1.003580 TGTCAAGATCAAGTGGGCTCC 59.996 52.381 0.00 0.00 0.00 4.70
2054 2092 2.479566 TGTCAAGATCAAGTGGGCTC 57.520 50.000 0.00 0.00 0.00 4.70
2055 2093 2.957402 TTGTCAAGATCAAGTGGGCT 57.043 45.000 0.00 0.00 0.00 5.19
2056 2094 3.084039 TCATTGTCAAGATCAAGTGGGC 58.916 45.455 0.00 0.00 0.00 5.36
2057 2095 3.128242 GCTCATTGTCAAGATCAAGTGGG 59.872 47.826 0.00 0.00 0.00 4.61
2058 2096 4.008330 AGCTCATTGTCAAGATCAAGTGG 58.992 43.478 0.00 0.00 0.00 4.00
2059 2097 4.694037 TGAGCTCATTGTCAAGATCAAGTG 59.306 41.667 13.74 0.00 35.17 3.16
2060 2098 4.903054 TGAGCTCATTGTCAAGATCAAGT 58.097 39.130 13.74 0.00 35.17 3.16
2061 2099 5.874895 TTGAGCTCATTGTCAAGATCAAG 57.125 39.130 19.04 0.00 41.51 3.02
2062 2100 6.829229 ATTTGAGCTCATTGTCAAGATCAA 57.171 33.333 19.04 4.29 43.83 2.57
2063 2101 6.829229 AATTTGAGCTCATTGTCAAGATCA 57.171 33.333 19.04 0.00 36.22 2.92
2064 2102 7.008086 CGAAAATTTGAGCTCATTGTCAAGATC 59.992 37.037 19.04 7.23 34.25 2.75
2065 2103 6.805271 CGAAAATTTGAGCTCATTGTCAAGAT 59.195 34.615 19.04 0.00 34.25 2.40
2066 2104 6.017192 TCGAAAATTTGAGCTCATTGTCAAGA 60.017 34.615 19.04 10.17 34.25 3.02
2067 2105 6.144854 TCGAAAATTTGAGCTCATTGTCAAG 58.855 36.000 19.04 7.94 34.25 3.02
2068 2106 6.070897 TCGAAAATTTGAGCTCATTGTCAA 57.929 33.333 19.04 8.86 0.00 3.18
2069 2107 5.687770 TCGAAAATTTGAGCTCATTGTCA 57.312 34.783 19.04 0.00 0.00 3.58
2070 2108 6.373779 TCTTCGAAAATTTGAGCTCATTGTC 58.626 36.000 19.04 13.26 0.00 3.18
2071 2109 6.317789 TCTTCGAAAATTTGAGCTCATTGT 57.682 33.333 19.04 4.64 0.00 2.71
2072 2110 5.285607 GCTCTTCGAAAATTTGAGCTCATTG 59.714 40.000 19.04 6.19 44.52 2.82
2073 2111 5.397326 GCTCTTCGAAAATTTGAGCTCATT 58.603 37.500 19.04 8.80 44.52 2.57
2074 2112 4.979388 GCTCTTCGAAAATTTGAGCTCAT 58.021 39.130 19.04 0.85 44.52 2.90
2075 2113 4.410492 GCTCTTCGAAAATTTGAGCTCA 57.590 40.909 22.25 13.74 44.52 4.26
2101 2139 4.785453 CTCCTTGGGAGCGGTGCC 62.785 72.222 19.28 19.28 43.29 5.01
2109 2147 0.034896 GCTTCGTGTTCTCCTTGGGA 59.965 55.000 0.00 0.00 0.00 4.37
2110 2148 1.291877 CGCTTCGTGTTCTCCTTGGG 61.292 60.000 0.00 0.00 0.00 4.12
2111 2149 0.319555 TCGCTTCGTGTTCTCCTTGG 60.320 55.000 0.00 0.00 0.00 3.61
2112 2150 0.784778 GTCGCTTCGTGTTCTCCTTG 59.215 55.000 0.00 0.00 0.00 3.61
2113 2151 0.663568 CGTCGCTTCGTGTTCTCCTT 60.664 55.000 0.00 0.00 0.00 3.36
2114 2152 1.081376 CGTCGCTTCGTGTTCTCCT 60.081 57.895 0.00 0.00 0.00 3.69
2115 2153 0.938168 AACGTCGCTTCGTGTTCTCC 60.938 55.000 4.02 0.00 43.38 3.71
2116 2154 0.430110 GAACGTCGCTTCGTGTTCTC 59.570 55.000 14.59 0.00 43.38 2.87
2117 2155 0.938168 GGAACGTCGCTTCGTGTTCT 60.938 55.000 18.29 0.00 43.38 3.01
2118 2156 1.210545 TGGAACGTCGCTTCGTGTTC 61.211 55.000 13.97 13.97 43.38 3.18
2119 2157 1.213094 CTGGAACGTCGCTTCGTGTT 61.213 55.000 4.02 0.00 43.38 3.32
2120 2158 1.660575 CTGGAACGTCGCTTCGTGT 60.661 57.895 4.02 0.00 43.38 4.49
2121 2159 2.372690 CCTGGAACGTCGCTTCGTG 61.373 63.158 4.02 0.00 43.38 4.35
2122 2160 2.049433 CCTGGAACGTCGCTTCGT 60.049 61.111 0.00 0.00 46.19 3.85
2123 2161 1.663702 AACCTGGAACGTCGCTTCG 60.664 57.895 0.00 0.00 0.00 3.79
2124 2162 0.878961 ACAACCTGGAACGTCGCTTC 60.879 55.000 0.00 0.00 0.00 3.86
2125 2163 0.390124 TACAACCTGGAACGTCGCTT 59.610 50.000 0.00 0.00 0.00 4.68
2126 2164 0.319297 GTACAACCTGGAACGTCGCT 60.319 55.000 0.00 0.00 0.00 4.93
2127 2165 0.598158 TGTACAACCTGGAACGTCGC 60.598 55.000 0.00 0.00 0.00 5.19
2128 2166 1.790623 CTTGTACAACCTGGAACGTCG 59.209 52.381 3.59 0.00 0.00 5.12
2129 2167 2.140717 CCTTGTACAACCTGGAACGTC 58.859 52.381 3.59 0.00 0.00 4.34
2130 2168 1.764134 TCCTTGTACAACCTGGAACGT 59.236 47.619 11.57 0.00 0.00 3.99
2131 2169 2.536761 TCCTTGTACAACCTGGAACG 57.463 50.000 11.57 0.00 0.00 3.95
2132 2170 3.816994 ACTTCCTTGTACAACCTGGAAC 58.183 45.455 18.89 0.00 33.77 3.62
2133 2171 4.657039 ACTACTTCCTTGTACAACCTGGAA 59.343 41.667 20.60 20.60 35.74 3.53
2134 2172 4.228824 ACTACTTCCTTGTACAACCTGGA 58.771 43.478 3.59 7.59 0.00 3.86
2135 2173 4.618920 ACTACTTCCTTGTACAACCTGG 57.381 45.455 3.59 5.08 0.00 4.45
2136 2174 6.342338 ACTACTACTTCCTTGTACAACCTG 57.658 41.667 3.59 0.00 0.00 4.00
2137 2175 6.990908 AACTACTACTTCCTTGTACAACCT 57.009 37.500 3.59 0.00 0.00 3.50
2138 2176 9.546428 TTTAAACTACTACTTCCTTGTACAACC 57.454 33.333 3.59 0.00 0.00 3.77
2140 2178 9.768662 CCTTTAAACTACTACTTCCTTGTACAA 57.231 33.333 8.28 8.28 0.00 2.41
2141 2179 9.146586 TCCTTTAAACTACTACTTCCTTGTACA 57.853 33.333 0.00 0.00 0.00 2.90
2142 2180 9.636879 CTCCTTTAAACTACTACTTCCTTGTAC 57.363 37.037 0.00 0.00 0.00 2.90
2143 2181 8.810041 CCTCCTTTAAACTACTACTTCCTTGTA 58.190 37.037 0.00 0.00 0.00 2.41
2144 2182 7.511714 TCCTCCTTTAAACTACTACTTCCTTGT 59.488 37.037 0.00 0.00 0.00 3.16
2145 2183 7.904205 TCCTCCTTTAAACTACTACTTCCTTG 58.096 38.462 0.00 0.00 0.00 3.61
2146 2184 7.954620 TCTCCTCCTTTAAACTACTACTTCCTT 59.045 37.037 0.00 0.00 0.00 3.36
2147 2185 7.477008 TCTCCTCCTTTAAACTACTACTTCCT 58.523 38.462 0.00 0.00 0.00 3.36
2148 2186 7.147863 CCTCTCCTCCTTTAAACTACTACTTCC 60.148 44.444 0.00 0.00 0.00 3.46
2149 2187 7.631161 GCCTCTCCTCCTTTAAACTACTACTTC 60.631 44.444 0.00 0.00 0.00 3.01
2150 2188 6.154877 GCCTCTCCTCCTTTAAACTACTACTT 59.845 42.308 0.00 0.00 0.00 2.24
2151 2189 5.657745 GCCTCTCCTCCTTTAAACTACTACT 59.342 44.000 0.00 0.00 0.00 2.57
2152 2190 5.421374 TGCCTCTCCTCCTTTAAACTACTAC 59.579 44.000 0.00 0.00 0.00 2.73
2153 2191 5.586877 TGCCTCTCCTCCTTTAAACTACTA 58.413 41.667 0.00 0.00 0.00 1.82
2154 2192 4.426704 TGCCTCTCCTCCTTTAAACTACT 58.573 43.478 0.00 0.00 0.00 2.57
2155 2193 4.466726 TCTGCCTCTCCTCCTTTAAACTAC 59.533 45.833 0.00 0.00 0.00 2.73
2156 2194 4.684724 TCTGCCTCTCCTCCTTTAAACTA 58.315 43.478 0.00 0.00 0.00 2.24
2157 2195 3.521727 TCTGCCTCTCCTCCTTTAAACT 58.478 45.455 0.00 0.00 0.00 2.66
2158 2196 3.983044 TCTGCCTCTCCTCCTTTAAAC 57.017 47.619 0.00 0.00 0.00 2.01
2159 2197 6.636454 TTTATCTGCCTCTCCTCCTTTAAA 57.364 37.500 0.00 0.00 0.00 1.52
2160 2198 6.415573 GTTTTATCTGCCTCTCCTCCTTTAA 58.584 40.000 0.00 0.00 0.00 1.52
2161 2199 5.395324 CGTTTTATCTGCCTCTCCTCCTTTA 60.395 44.000 0.00 0.00 0.00 1.85
2162 2200 4.624125 CGTTTTATCTGCCTCTCCTCCTTT 60.624 45.833 0.00 0.00 0.00 3.11
2163 2201 3.118592 CGTTTTATCTGCCTCTCCTCCTT 60.119 47.826 0.00 0.00 0.00 3.36
2164 2202 2.432510 CGTTTTATCTGCCTCTCCTCCT 59.567 50.000 0.00 0.00 0.00 3.69
2165 2203 2.431057 TCGTTTTATCTGCCTCTCCTCC 59.569 50.000 0.00 0.00 0.00 4.30
2166 2204 3.802948 TCGTTTTATCTGCCTCTCCTC 57.197 47.619 0.00 0.00 0.00 3.71
2167 2205 3.452627 ACATCGTTTTATCTGCCTCTCCT 59.547 43.478 0.00 0.00 0.00 3.69
2168 2206 3.798202 ACATCGTTTTATCTGCCTCTCC 58.202 45.455 0.00 0.00 0.00 3.71
2169 2207 4.688021 AGACATCGTTTTATCTGCCTCTC 58.312 43.478 0.00 0.00 0.00 3.20
2170 2208 4.442192 GGAGACATCGTTTTATCTGCCTCT 60.442 45.833 0.00 0.00 0.00 3.69
2171 2209 3.804873 GGAGACATCGTTTTATCTGCCTC 59.195 47.826 0.00 0.00 0.00 4.70
2172 2210 3.197766 TGGAGACATCGTTTTATCTGCCT 59.802 43.478 0.00 0.00 33.40 4.75
2173 2211 3.531538 TGGAGACATCGTTTTATCTGCC 58.468 45.455 0.00 0.00 33.40 4.85
2174 2212 4.034510 CCTTGGAGACATCGTTTTATCTGC 59.965 45.833 0.00 0.00 42.32 4.26
2175 2213 5.419542 TCCTTGGAGACATCGTTTTATCTG 58.580 41.667 0.00 0.00 42.32 2.90
2176 2214 5.422331 TCTCCTTGGAGACATCGTTTTATCT 59.578 40.000 14.79 0.00 42.32 1.98
2177 2215 5.661458 TCTCCTTGGAGACATCGTTTTATC 58.339 41.667 14.79 0.00 42.32 1.75
2178 2216 5.677319 TCTCCTTGGAGACATCGTTTTAT 57.323 39.130 14.79 0.00 42.32 1.40
2179 2217 5.245301 TCTTCTCCTTGGAGACATCGTTTTA 59.755 40.000 18.03 0.99 42.32 1.52
2180 2218 4.040461 TCTTCTCCTTGGAGACATCGTTTT 59.960 41.667 18.03 0.00 42.32 2.43
2181 2219 3.578716 TCTTCTCCTTGGAGACATCGTTT 59.421 43.478 18.03 0.00 42.32 3.60
2182 2220 3.165875 TCTTCTCCTTGGAGACATCGTT 58.834 45.455 18.03 0.00 42.32 3.85
2183 2221 2.808919 TCTTCTCCTTGGAGACATCGT 58.191 47.619 18.03 0.00 42.32 3.73
2184 2222 3.056536 TGTTCTTCTCCTTGGAGACATCG 60.057 47.826 18.03 8.10 42.32 3.84
2185 2223 4.020662 ACTGTTCTTCTCCTTGGAGACATC 60.021 45.833 18.03 10.03 42.32 3.06
2186 2224 3.906846 ACTGTTCTTCTCCTTGGAGACAT 59.093 43.478 18.03 3.22 42.32 3.06
2187 2225 3.070159 CACTGTTCTTCTCCTTGGAGACA 59.930 47.826 18.03 12.42 39.83 3.41
2188 2226 3.070302 ACACTGTTCTTCTCCTTGGAGAC 59.930 47.826 18.03 8.71 0.00 3.36
2189 2227 3.309296 ACACTGTTCTTCTCCTTGGAGA 58.691 45.455 14.79 14.79 0.00 3.71
2190 2228 3.556004 GGACACTGTTCTTCTCCTTGGAG 60.556 52.174 10.28 10.28 0.00 3.86
2191 2229 2.368875 GGACACTGTTCTTCTCCTTGGA 59.631 50.000 0.00 0.00 0.00 3.53
2192 2230 2.104792 TGGACACTGTTCTTCTCCTTGG 59.895 50.000 0.00 0.00 0.00 3.61
2193 2231 3.134458 GTGGACACTGTTCTTCTCCTTG 58.866 50.000 0.00 0.00 0.00 3.61
2194 2232 2.771943 TGTGGACACTGTTCTTCTCCTT 59.228 45.455 3.91 0.00 0.00 3.36
2195 2233 2.398588 TGTGGACACTGTTCTTCTCCT 58.601 47.619 3.91 0.00 0.00 3.69
2196 2234 2.910688 TGTGGACACTGTTCTTCTCC 57.089 50.000 3.91 0.00 0.00 3.71
2197 2235 3.938963 TGTTTGTGGACACTGTTCTTCTC 59.061 43.478 3.91 0.00 0.00 2.87
2198 2236 3.950397 TGTTTGTGGACACTGTTCTTCT 58.050 40.909 3.91 0.00 0.00 2.85
2199 2237 4.552767 CGATGTTTGTGGACACTGTTCTTC 60.553 45.833 3.91 0.66 31.30 2.87
2200 2238 3.312421 CGATGTTTGTGGACACTGTTCTT 59.688 43.478 3.91 0.00 31.30 2.52
2201 2239 2.872245 CGATGTTTGTGGACACTGTTCT 59.128 45.455 3.91 0.00 31.30 3.01
2202 2240 2.612212 ACGATGTTTGTGGACACTGTTC 59.388 45.455 3.91 0.00 31.30 3.18
2203 2241 2.639065 ACGATGTTTGTGGACACTGTT 58.361 42.857 3.91 0.00 31.30 3.16
2204 2242 2.325583 ACGATGTTTGTGGACACTGT 57.674 45.000 3.91 0.00 31.30 3.55
2205 2243 4.434198 CGATAACGATGTTTGTGGACACTG 60.434 45.833 3.91 0.00 42.66 3.66
2206 2244 3.678072 CGATAACGATGTTTGTGGACACT 59.322 43.478 3.91 0.00 42.66 3.55
2207 2245 3.676172 TCGATAACGATGTTTGTGGACAC 59.324 43.478 0.00 0.00 43.81 3.67
2208 2246 3.915536 TCGATAACGATGTTTGTGGACA 58.084 40.909 0.00 0.00 43.81 4.02
2220 2258 6.160684 TGGATCTTTTTCTTGTCGATAACGA 58.839 36.000 0.00 0.00 46.56 3.85
2221 2259 6.403333 TGGATCTTTTTCTTGTCGATAACG 57.597 37.500 0.00 0.00 41.26 3.18
2222 2260 6.092807 AGCTGGATCTTTTTCTTGTCGATAAC 59.907 38.462 0.00 0.00 0.00 1.89
2223 2261 6.173339 AGCTGGATCTTTTTCTTGTCGATAA 58.827 36.000 0.00 0.00 0.00 1.75
2224 2262 5.734720 AGCTGGATCTTTTTCTTGTCGATA 58.265 37.500 0.00 0.00 0.00 2.92
2225 2263 4.583871 AGCTGGATCTTTTTCTTGTCGAT 58.416 39.130 0.00 0.00 0.00 3.59
2226 2264 4.008074 AGCTGGATCTTTTTCTTGTCGA 57.992 40.909 0.00 0.00 0.00 4.20
2227 2265 4.331168 CCTAGCTGGATCTTTTTCTTGTCG 59.669 45.833 0.00 0.00 38.35 4.35
2228 2266 4.095632 GCCTAGCTGGATCTTTTTCTTGTC 59.904 45.833 0.00 0.00 38.35 3.18
2229 2267 4.013050 GCCTAGCTGGATCTTTTTCTTGT 58.987 43.478 0.00 0.00 38.35 3.16
2230 2268 4.268359 AGCCTAGCTGGATCTTTTTCTTG 58.732 43.478 0.00 0.00 37.57 3.02
2231 2269 4.582973 AGCCTAGCTGGATCTTTTTCTT 57.417 40.909 0.00 0.00 37.57 2.52
2232 2270 4.582973 AAGCCTAGCTGGATCTTTTTCT 57.417 40.909 0.00 0.00 39.62 2.52
2233 2271 4.201861 CGAAAGCCTAGCTGGATCTTTTTC 60.202 45.833 14.79 8.95 39.62 2.29
2234 2272 3.691609 CGAAAGCCTAGCTGGATCTTTTT 59.308 43.478 14.79 2.75 39.62 1.94
2235 2273 3.274288 CGAAAGCCTAGCTGGATCTTTT 58.726 45.455 14.79 4.14 39.62 2.27
2236 2274 2.911484 CGAAAGCCTAGCTGGATCTTT 58.089 47.619 13.96 13.96 39.62 2.52
2237 2275 2.611225 CGAAAGCCTAGCTGGATCTT 57.389 50.000 0.00 0.00 39.62 2.40
2256 2294 2.514824 GGAGGTTGGAGCATCGGC 60.515 66.667 0.00 0.00 41.61 5.54
2257 2295 1.026718 GTTGGAGGTTGGAGCATCGG 61.027 60.000 0.00 0.00 34.37 4.18
2258 2296 1.361668 CGTTGGAGGTTGGAGCATCG 61.362 60.000 0.00 0.00 34.37 3.84
2259 2297 1.648467 GCGTTGGAGGTTGGAGCATC 61.648 60.000 0.00 0.00 0.00 3.91
2260 2298 1.675641 GCGTTGGAGGTTGGAGCAT 60.676 57.895 0.00 0.00 0.00 3.79
2261 2299 2.281484 GCGTTGGAGGTTGGAGCA 60.281 61.111 0.00 0.00 0.00 4.26
2262 2300 2.032681 AGCGTTGGAGGTTGGAGC 59.967 61.111 0.00 0.00 0.00 4.70
2263 2301 3.972227 CAGCGTTGGAGGTTGGAG 58.028 61.111 0.00 0.00 0.00 3.86
2272 2310 0.670546 ACAATCGTCTCCAGCGTTGG 60.671 55.000 12.81 12.81 46.49 3.77
2273 2311 1.920574 CTACAATCGTCTCCAGCGTTG 59.079 52.381 0.00 0.00 0.00 4.10
2274 2312 1.816835 TCTACAATCGTCTCCAGCGTT 59.183 47.619 0.00 0.00 0.00 4.84
2275 2313 1.132643 GTCTACAATCGTCTCCAGCGT 59.867 52.381 0.00 0.00 0.00 5.07
2276 2314 1.132453 TGTCTACAATCGTCTCCAGCG 59.868 52.381 0.00 0.00 0.00 5.18
2277 2315 2.924290 GTTGTCTACAATCGTCTCCAGC 59.076 50.000 0.00 0.00 38.24 4.85
2278 2316 3.056821 TGGTTGTCTACAATCGTCTCCAG 60.057 47.826 0.00 0.00 39.75 3.86
2279 2317 2.894765 TGGTTGTCTACAATCGTCTCCA 59.105 45.455 0.00 0.00 39.75 3.86
2280 2318 3.056749 AGTGGTTGTCTACAATCGTCTCC 60.057 47.826 0.00 0.00 39.75 3.71
2281 2319 3.921021 CAGTGGTTGTCTACAATCGTCTC 59.079 47.826 0.00 0.00 39.75 3.36
2282 2320 3.572682 TCAGTGGTTGTCTACAATCGTCT 59.427 43.478 0.00 0.00 39.75 4.18
2283 2321 3.909430 TCAGTGGTTGTCTACAATCGTC 58.091 45.455 0.00 0.00 39.75 4.20
2284 2322 4.021456 TGATCAGTGGTTGTCTACAATCGT 60.021 41.667 0.00 0.00 39.75 3.73
2285 2323 4.327357 GTGATCAGTGGTTGTCTACAATCG 59.673 45.833 0.00 0.00 39.75 3.34
2286 2324 5.120830 GTGTGATCAGTGGTTGTCTACAATC 59.879 44.000 0.00 0.00 38.24 2.67
2287 2325 4.997395 GTGTGATCAGTGGTTGTCTACAAT 59.003 41.667 0.00 0.00 38.24 2.71
2288 2326 4.100963 AGTGTGATCAGTGGTTGTCTACAA 59.899 41.667 0.00 0.00 0.00 2.41
2289 2327 3.641436 AGTGTGATCAGTGGTTGTCTACA 59.359 43.478 0.00 0.00 0.00 2.74
2290 2328 4.258702 AGTGTGATCAGTGGTTGTCTAC 57.741 45.455 0.00 0.00 0.00 2.59
2291 2329 4.343814 TCAAGTGTGATCAGTGGTTGTCTA 59.656 41.667 0.00 0.00 0.00 2.59
2292 2330 3.134623 TCAAGTGTGATCAGTGGTTGTCT 59.865 43.478 0.00 0.00 0.00 3.41
2293 2331 3.466836 TCAAGTGTGATCAGTGGTTGTC 58.533 45.455 0.00 0.00 0.00 3.18
2294 2332 3.558931 TCAAGTGTGATCAGTGGTTGT 57.441 42.857 0.00 0.00 0.00 3.32
2295 2333 3.189910 CCATCAAGTGTGATCAGTGGTTG 59.810 47.826 0.00 0.00 42.88 3.77
2296 2334 3.072915 TCCATCAAGTGTGATCAGTGGTT 59.927 43.478 0.00 0.00 42.88 3.67
2297 2335 2.639347 TCCATCAAGTGTGATCAGTGGT 59.361 45.455 0.00 0.00 42.88 4.16
2298 2336 3.339253 TCCATCAAGTGTGATCAGTGG 57.661 47.619 0.00 0.00 42.88 4.00
2299 2337 3.438087 GGTTCCATCAAGTGTGATCAGTG 59.562 47.826 0.00 0.00 42.88 3.66
2300 2338 3.328931 AGGTTCCATCAAGTGTGATCAGT 59.671 43.478 0.00 0.00 42.88 3.41
2301 2339 3.688185 CAGGTTCCATCAAGTGTGATCAG 59.312 47.826 0.00 0.00 42.88 2.90
2302 2340 3.559811 CCAGGTTCCATCAAGTGTGATCA 60.560 47.826 0.00 0.00 42.88 2.92
2303 2341 3.012518 CCAGGTTCCATCAAGTGTGATC 58.987 50.000 0.00 0.00 42.88 2.92
2304 2342 2.881403 GCCAGGTTCCATCAAGTGTGAT 60.881 50.000 0.00 0.00 45.80 3.06
2305 2343 1.545428 GCCAGGTTCCATCAAGTGTGA 60.545 52.381 0.00 0.00 38.41 3.58
2306 2344 0.883833 GCCAGGTTCCATCAAGTGTG 59.116 55.000 0.00 0.00 0.00 3.82
2307 2345 0.478072 TGCCAGGTTCCATCAAGTGT 59.522 50.000 0.00 0.00 0.00 3.55
2308 2346 1.542915 CTTGCCAGGTTCCATCAAGTG 59.457 52.381 0.00 0.00 31.99 3.16
2309 2347 1.145738 ACTTGCCAGGTTCCATCAAGT 59.854 47.619 13.36 13.36 41.50 3.16
2310 2348 1.542915 CACTTGCCAGGTTCCATCAAG 59.457 52.381 12.49 12.49 39.79 3.02
2311 2349 1.619654 CACTTGCCAGGTTCCATCAA 58.380 50.000 0.00 0.00 0.00 2.57
2312 2350 0.251297 CCACTTGCCAGGTTCCATCA 60.251 55.000 0.00 0.00 0.00 3.07
2313 2351 0.967380 CCCACTTGCCAGGTTCCATC 60.967 60.000 0.00 0.00 0.00 3.51
2314 2352 1.077265 CCCACTTGCCAGGTTCCAT 59.923 57.895 0.00 0.00 0.00 3.41
2315 2353 2.391130 ACCCACTTGCCAGGTTCCA 61.391 57.895 0.00 0.00 0.00 3.53
2316 2354 1.903404 CACCCACTTGCCAGGTTCC 60.903 63.158 0.00 0.00 0.00 3.62
2317 2355 0.251341 ATCACCCACTTGCCAGGTTC 60.251 55.000 0.00 0.00 0.00 3.62
2318 2356 1.072266 TATCACCCACTTGCCAGGTT 58.928 50.000 0.00 0.00 0.00 3.50
2319 2357 0.328258 GTATCACCCACTTGCCAGGT 59.672 55.000 0.00 0.00 0.00 4.00
2320 2358 0.394352 GGTATCACCCACTTGCCAGG 60.394 60.000 0.00 0.00 30.04 4.45
2321 2359 0.620556 AGGTATCACCCACTTGCCAG 59.379 55.000 0.00 0.00 39.75 4.85
2322 2360 0.618458 GAGGTATCACCCACTTGCCA 59.382 55.000 0.00 0.00 39.75 4.92
2323 2361 0.618458 TGAGGTATCACCCACTTGCC 59.382 55.000 0.00 0.00 39.75 4.52
2324 2362 2.014068 GCTGAGGTATCACCCACTTGC 61.014 57.143 0.00 0.00 39.75 4.01
2325 2363 1.740380 CGCTGAGGTATCACCCACTTG 60.740 57.143 0.00 0.00 39.75 3.16
2326 2364 0.537188 CGCTGAGGTATCACCCACTT 59.463 55.000 0.00 0.00 39.75 3.16
2327 2365 0.324368 TCGCTGAGGTATCACCCACT 60.324 55.000 0.00 0.00 39.75 4.00
2328 2366 0.179108 GTCGCTGAGGTATCACCCAC 60.179 60.000 0.00 0.00 39.75 4.61
2329 2367 1.327690 GGTCGCTGAGGTATCACCCA 61.328 60.000 0.00 0.00 39.75 4.51
2330 2368 1.442148 GGTCGCTGAGGTATCACCC 59.558 63.158 0.00 0.00 39.75 4.61
2331 2369 1.327690 TGGGTCGCTGAGGTATCACC 61.328 60.000 0.00 0.00 38.99 4.02
2332 2370 0.753262 ATGGGTCGCTGAGGTATCAC 59.247 55.000 0.00 0.00 0.00 3.06
2333 2371 0.752658 CATGGGTCGCTGAGGTATCA 59.247 55.000 0.00 0.00 0.00 2.15
2334 2372 0.753262 ACATGGGTCGCTGAGGTATC 59.247 55.000 0.00 0.00 0.00 2.24
2335 2373 0.465705 CACATGGGTCGCTGAGGTAT 59.534 55.000 0.00 0.00 0.00 2.73
2336 2374 1.613317 CCACATGGGTCGCTGAGGTA 61.613 60.000 0.00 0.00 0.00 3.08
2337 2375 2.665000 CACATGGGTCGCTGAGGT 59.335 61.111 0.00 0.00 0.00 3.85
2338 2376 2.124983 CCACATGGGTCGCTGAGG 60.125 66.667 0.00 0.00 0.00 3.86
2339 2377 2.821366 GCCACATGGGTCGCTGAG 60.821 66.667 0.00 0.00 39.65 3.35
2340 2378 2.970379 ATGCCACATGGGTCGCTGA 61.970 57.895 0.00 0.00 39.65 4.26
2341 2379 2.438975 ATGCCACATGGGTCGCTG 60.439 61.111 0.00 0.00 39.65 5.18
2342 2380 2.438975 CATGCCACATGGGTCGCT 60.439 61.111 0.00 0.00 39.65 4.93
2343 2381 3.520862 CCATGCCACATGGGTCGC 61.521 66.667 17.18 0.00 39.65 5.19
2344 2382 3.520862 GCCATGCCACATGGGTCG 61.521 66.667 24.13 3.50 39.53 4.79
2345 2383 1.983481 TTGCCATGCCACATGGGTC 60.983 57.895 24.13 11.70 39.53 4.46
2346 2384 2.120053 TTGCCATGCCACATGGGT 59.880 55.556 24.13 0.00 39.53 4.51
2347 2385 2.580276 GTTGCCATGCCACATGGG 59.420 61.111 24.13 9.44 39.53 4.00
2348 2386 1.669049 ATCGTTGCCATGCCACATGG 61.669 55.000 19.99 19.99 41.99 3.66
2349 2387 0.248743 GATCGTTGCCATGCCACATG 60.249 55.000 0.48 0.48 0.00 3.21
2350 2388 1.386525 GGATCGTTGCCATGCCACAT 61.387 55.000 0.00 0.00 0.00 3.21
2351 2389 2.045708 GGATCGTTGCCATGCCACA 61.046 57.895 0.00 0.00 0.00 4.17
2352 2390 0.463654 TAGGATCGTTGCCATGCCAC 60.464 55.000 0.00 0.00 0.00 5.01
2353 2391 0.179048 CTAGGATCGTTGCCATGCCA 60.179 55.000 0.00 0.00 0.00 4.92
2354 2392 1.510480 GCTAGGATCGTTGCCATGCC 61.510 60.000 10.20 0.00 0.00 4.40
2355 2393 0.815213 TGCTAGGATCGTTGCCATGC 60.815 55.000 17.07 3.71 0.00 4.06
2356 2394 1.667236 TTGCTAGGATCGTTGCCATG 58.333 50.000 17.07 0.00 0.00 3.66
2357 2395 2.017049 GTTTGCTAGGATCGTTGCCAT 58.983 47.619 17.07 0.00 0.00 4.40
2358 2396 1.448985 GTTTGCTAGGATCGTTGCCA 58.551 50.000 17.07 5.57 0.00 4.92
2359 2397 0.733150 GGTTTGCTAGGATCGTTGCC 59.267 55.000 17.07 4.23 0.00 4.52
2360 2398 0.733150 GGGTTTGCTAGGATCGTTGC 59.267 55.000 13.76 13.76 0.00 4.17
2361 2399 1.379527 GGGGTTTGCTAGGATCGTTG 58.620 55.000 0.00 0.00 0.00 4.10
2362 2400 0.255033 GGGGGTTTGCTAGGATCGTT 59.745 55.000 0.00 0.00 0.00 3.85
2363 2401 0.912487 TGGGGGTTTGCTAGGATCGT 60.912 55.000 0.00 0.00 0.00 3.73
2364 2402 0.179045 CTGGGGGTTTGCTAGGATCG 60.179 60.000 0.00 0.00 0.00 3.69
2365 2403 1.213296 TCTGGGGGTTTGCTAGGATC 58.787 55.000 0.00 0.00 0.00 3.36
2366 2404 1.777272 GATCTGGGGGTTTGCTAGGAT 59.223 52.381 0.00 0.00 0.00 3.24
2367 2405 1.213296 GATCTGGGGGTTTGCTAGGA 58.787 55.000 0.00 0.00 0.00 2.94
2368 2406 0.183731 GGATCTGGGGGTTTGCTAGG 59.816 60.000 0.00 0.00 0.00 3.02
2369 2407 0.183731 GGGATCTGGGGGTTTGCTAG 59.816 60.000 0.00 0.00 0.00 3.42
2370 2408 1.632018 CGGGATCTGGGGGTTTGCTA 61.632 60.000 0.00 0.00 0.00 3.49
2371 2409 2.983879 CGGGATCTGGGGGTTTGCT 61.984 63.158 0.00 0.00 0.00 3.91
2372 2410 2.440247 CGGGATCTGGGGGTTTGC 60.440 66.667 0.00 0.00 0.00 3.68
2373 2411 1.224592 CTCGGGATCTGGGGGTTTG 59.775 63.158 0.00 0.00 0.00 2.93
2374 2412 0.327576 ATCTCGGGATCTGGGGGTTT 60.328 55.000 0.00 0.00 0.00 3.27
2375 2413 1.056700 CATCTCGGGATCTGGGGGTT 61.057 60.000 0.00 0.00 0.00 4.11
2376 2414 1.460305 CATCTCGGGATCTGGGGGT 60.460 63.158 0.00 0.00 0.00 4.95
2377 2415 1.152247 TCATCTCGGGATCTGGGGG 60.152 63.158 0.00 0.00 0.00 5.40
2378 2416 1.476007 GGTCATCTCGGGATCTGGGG 61.476 65.000 0.00 0.00 0.00 4.96
2379 2417 0.470833 AGGTCATCTCGGGATCTGGG 60.471 60.000 0.00 0.00 0.00 4.45
2380 2418 1.342819 GAAGGTCATCTCGGGATCTGG 59.657 57.143 0.00 0.00 0.00 3.86
2381 2419 1.342819 GGAAGGTCATCTCGGGATCTG 59.657 57.143 0.00 0.00 0.00 2.90
2382 2420 1.710816 GGAAGGTCATCTCGGGATCT 58.289 55.000 0.00 0.00 0.00 2.75
2383 2421 0.682292 GGGAAGGTCATCTCGGGATC 59.318 60.000 0.00 0.00 0.00 3.36
2384 2422 0.031111 TGGGAAGGTCATCTCGGGAT 60.031 55.000 0.00 0.00 0.00 3.85
2385 2423 0.252513 TTGGGAAGGTCATCTCGGGA 60.253 55.000 0.00 0.00 0.00 5.14
2386 2424 0.839946 ATTGGGAAGGTCATCTCGGG 59.160 55.000 0.00 0.00 0.00 5.14
2387 2425 1.486310 TGATTGGGAAGGTCATCTCGG 59.514 52.381 0.00 0.00 0.00 4.63
2388 2426 2.988010 TGATTGGGAAGGTCATCTCG 57.012 50.000 0.00 0.00 0.00 4.04
2389 2427 4.494091 TCTTGATTGGGAAGGTCATCTC 57.506 45.455 0.00 0.00 0.00 2.75
2390 2428 4.853007 CTTCTTGATTGGGAAGGTCATCT 58.147 43.478 0.00 0.00 36.32 2.90
2391 2429 3.379688 GCTTCTTGATTGGGAAGGTCATC 59.620 47.826 0.00 0.00 39.25 2.92
2392 2430 3.245371 TGCTTCTTGATTGGGAAGGTCAT 60.245 43.478 0.00 0.00 39.25 3.06
2393 2431 2.108075 TGCTTCTTGATTGGGAAGGTCA 59.892 45.455 0.00 0.00 39.25 4.02
2394 2432 2.489722 GTGCTTCTTGATTGGGAAGGTC 59.510 50.000 0.00 0.00 39.25 3.85
2395 2433 2.519013 GTGCTTCTTGATTGGGAAGGT 58.481 47.619 0.00 0.00 39.25 3.50
2396 2434 1.470098 CGTGCTTCTTGATTGGGAAGG 59.530 52.381 0.00 0.00 39.25 3.46
2397 2435 1.135575 GCGTGCTTCTTGATTGGGAAG 60.136 52.381 0.00 0.00 41.08 3.46
2398 2436 0.881118 GCGTGCTTCTTGATTGGGAA 59.119 50.000 0.00 0.00 0.00 3.97
2399 2437 0.036732 AGCGTGCTTCTTGATTGGGA 59.963 50.000 0.00 0.00 0.00 4.37
2400 2438 0.169672 CAGCGTGCTTCTTGATTGGG 59.830 55.000 0.00 0.00 0.00 4.12
2401 2439 0.877071 ACAGCGTGCTTCTTGATTGG 59.123 50.000 0.00 0.00 0.00 3.16
2402 2440 1.802960 AGACAGCGTGCTTCTTGATTG 59.197 47.619 0.00 0.00 0.00 2.67
2403 2441 2.175878 AGACAGCGTGCTTCTTGATT 57.824 45.000 0.00 0.00 0.00 2.57
2404 2442 3.319137 TTAGACAGCGTGCTTCTTGAT 57.681 42.857 10.35 0.00 0.00 2.57
2405 2443 2.812358 TTAGACAGCGTGCTTCTTGA 57.188 45.000 10.35 1.38 0.00 3.02
2406 2444 3.494626 TCTTTTAGACAGCGTGCTTCTTG 59.505 43.478 10.35 0.00 0.00 3.02
2407 2445 3.728845 TCTTTTAGACAGCGTGCTTCTT 58.271 40.909 10.35 0.00 0.00 2.52
2408 2446 3.386768 TCTTTTAGACAGCGTGCTTCT 57.613 42.857 0.00 2.04 0.00 2.85
2409 2447 3.665585 GCTTCTTTTAGACAGCGTGCTTC 60.666 47.826 0.00 0.00 0.00 3.86
2410 2448 2.224314 GCTTCTTTTAGACAGCGTGCTT 59.776 45.455 0.00 0.00 0.00 3.91
2411 2449 1.801178 GCTTCTTTTAGACAGCGTGCT 59.199 47.619 0.00 0.00 0.00 4.40
2412 2450 1.531149 TGCTTCTTTTAGACAGCGTGC 59.469 47.619 0.00 0.00 33.83 5.34
2413 2451 3.878086 TTGCTTCTTTTAGACAGCGTG 57.122 42.857 0.00 0.00 33.83 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.