>input_sequence_80427
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ATGGCGTTCAAGCACCAGCTCAT
CCTCTCGACCGCCATCCTGCTCGCCGTACTTGCCGCGGCGTCGGCCAGCTTCAGGGACCGATGCGTCCCAGGGCGGGAGA
TCCCATACGAGTCGCTTAACGCCTGCCGCGAGTACGCGGTCAGACAAACATGCGGCTACTACCTCTCCGCCGAGAGGCTG
AAGAGGCAGTGCTGCGACGAACTGTCCAAGGTCCCGGAGTTGTGCCGGTGCGAGGTGCTGCACATCCTCATGGATGGGAG
AGTGACTAAGGAGGGTGTGGTTAAGGGCAGCCTCCTCAAGGACATGTCCGGATGCAAAAAGTTGACGAGGGAGTTCATCG
CGGGCATCGTCGGGCGGGAGGAGTGCAACTTAGAGACTGTCTTCGGGCGGTACCATTATTGCCCGACCCAATATCCTG--
----AAGTGGTCGTGTAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr4B_1_TraesCS4B01G249400
TATTTTTTCTAAGATTGCCCCTCATGTTTACATACTGCATTGAATGCAAGCGAATGACGCAACAAATGCAAAGGAAAATA
AGAACTCATCCAACCTAACTAAAGCCTAGCTCAGCACAACTAACCCCATAACACAACACCAAAAAACATTACTCCTGGGG
AAGTGAAAAATGTGAATGCCACCACAAAAGAACGTCACAGTGAAGTGCGTGTTAGCCTCTAGTTATTTCTGATGTTCTCT
AATATGTGGACGGCTTTTAGGATCCATCCCATGAAGATGACTTCTACAATATTGACTTATAAACATTGATTACATCCATA
TATTGGGTTCCCGTTATGTTAGCTAATCCAGGTGTATAATTTTTTTTCTCACTGATCTCCACACACGAACCAAATGAAAG
TTCACACGAAGTGTTAGTGTTGGATCACATAAGAAGTAAATGTAGAAGAAAATAATGCCATATAGACCATAGATACAACT
ATTGACCACATGTGATAAGATAACTCATGCCTTGCACGCTGAGAAAGTTAGGAACCCAGTGGCAGCAAATCTGGCCATTC
TTCCACTCAACCCCCAACCCGCATTTTCCTCCAAATTATGTTGCCATAAGCTCCAAATTCTACTAGGTTTTTCCCCATCT
TCTCACATGATTGCTGACTGCAAATAAAAACAACATTTGGTTGGTTTAACAAGCATGATCTCGATCCACACGTAAACGAA
ATAAAGGTTTACTTGAAGTGCTAGTGTTAGATCACATGAGTCTTTTATCGTACATGAACAAATTCTGTTGTCGAAAAGAT
TAATTAGTTAGCCTTTTATCGTACATGACATCCAAGTTTCCATTACGCGGGATTCCAACGTAAAAGCAAAAAGGGCAAAA
GACACATGAGTACCCACTAAGCAAAGATCATCGATCTTCCTTTCTCCT-----AGTATATATACATGCAATACATCTAGC
CAAGATCCAACAACACCCCATCC------AT----TTGAAAAGGAG--GAGTTGAGAATGGCGTTCAAGCACCAGCTCAT
CCTCTCGACCGCCATCCTGCTCGCCGTACTTGCCGCGGCGTCGGCCAGCTTCAGGGACCGATGCGTCCCAGGGCGGGAGA
TCCCATACGAGTCGCTTAACGCCTGCCGCGAGTACGCGGTCAGACAAACATGCGGCTACTACCTCTCCGCCGAGAGGCTG
AAGAGGCAGTGCTGCGACGAACTGTCCAAGGTCCCGGAGTTGTGCCGGTGCGAGGTGCTGCACATCCTCATGGATGGGAG
AGTGACTAAGGAGGGTGTGGTTAAGGGCAGCCTCCTCAAGGACATGTCCGGATGCAAAAAGTTGACGAGGGAGTTCATCG
CGGGCATCGTCGGGCGGGAGGAGTGCAACTTAGAGACTGTCTTCGGGCGGTACCATTATTGCCCGACCCAATATCCTG--
----AAGTGGTCGTGTAACTTT----ATAAATAGCTCGAGCGTGAATAAGCTTGTTGCTCGATCGATGGACTAATCGCAT
ATGTGTATCTATGCGCATGTGCGGAAAATATGGCAACAAAGAGCATCCGAGAGGATGATGTTTATCTTCTGTTAAGATGT
GCGGCAGTTATACTAGTGCAGAAAAGCTTATATATGGTGTGTTTGATTGCCGTGCTATTTTTTGTGTTTCCCTGGAGTGT
GCCTCGGT---GTGTGTATGGGGTGATATAATACAATCTCTAGTCCATGTTGTGCACGAGTCGTTTGGTTGCCCACAAAG
TCACGAGTTACATGAGAGAAGAAACACAAGCACCGCGTTTGGTTAA-TGTTTGTGCTGCCTAGATGCAACATTTGGTTGT
TTGGTTATGTGTACACTGAT----ACTCTCACCTCTTGTCCATATGTTGAACTTCTTACTTTACCGAAAAAGATTTTCGC
CTCGCTTTCTTTGTAGATAAAGCAACGGCCGAACAGCTTACAAAGATAGCTCACACCCACACCAACCCCATTGGGGATTC
TAGGTTTACAATATAAGTACAAAGGGTCC--AAGCAGGAAACCTAGTAAACAAAAAGCAAGCAATGTTAAACTAAAGAAA
AATAACTAAAGGAGCCCACTTGATCTTGACAATGAGCTCAAATTTTCGAAGAGCTCGGGGCACCGCTCCCAAGGAGAACA
CGAAGCGACGTTCCAGGTTGTACAAGGAAGTAGTAGTTTAAAGGAGGAGAGGCAGATAAAACGATGTCTCCAAGGAGAAG
AACAGTGTCCACAAACATCGTTATCGACAAGAAAAAGATCCAGCTAGGCTTTCGCCGATGCTCCAACCTCCAACGCTGGA
GACGATTGTAGACAACCACTGATCACACTTGATGGAACCTGGCAAGTGGGTGATACCTCAGCGACCCATGTGGCATGGCA
ACGATCCTAGCAAACCCCCAGATCCCGAGATGACCTTCCCAATCAAGAAGCACGCTGTCTAAAAGAAGCAAA
>chr4D_4
---TTTTTCTAAGATTGCCCCTCGTGTTTACATACTCCATTGAATGGACGCGAATGACGCAACAAATGCAAAGGAAAATA
AGAACTCATCCAACCTAACTAAAGCCTAGCTCAGCACAACTAACCCCGTGACACAACACCAAAAACCATTACTCTCGAGA
AAGGGAAAAATGCGAACGCCACCACAAAAGAATGTCACAGTGAAGTGCGCGTTAGCGTCTAGTTATTCCT-ATGTTCTCT
AATATGTGGACGGCTTTTAGGATCCATCCCATGAAGATGATTTCTACAATATTGACTTATAAACATTGATTACATCCATA
TA-TGGGTTCCCGTTATGTTAGCTAATCCAGGTGTATAATTTT-TTTCTCATTGATCTCCACACACGAACCAAATGAAAG
TTCACACGAAGTGTTAGTGTTGGATCACATAAGAAGTAAATGTAGAAGAAAATAATGCCATATAGACCATAGATACAACT
ATTGACCACATGTGATAAGATAACTCATGCCTTCCACGCTGAGAAAGTTAGGAACCCAGTGGCAGCAAATCTGGCCATTC
TTCCACTCAACCCCCAACCCGCATTTTCCTCCAAATTATGTTGCCATAAGCTCCAAATTCTACTAGGCCTTTTCTCATCT
TCTCACATGATTGCTGACTGCAAATAAAAACAACATTTGGTTGTTTTAACAAGCATGATCTCGATCCACACATAAACGAA
ATAAAGGTTTACTTGAAGTGCTAGTGTTAGATCACATGAGTCTTTTATCGTACATGAACAAATTCTATTATCGAAAAGAT
TAATTAGTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr4A_778
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ACAAATTCTGTTATCAAAAGGAT
TAATTAGTTAGCCTTTTATCGTACATGACATCCAAGTTTCCACTACGTGGGACTCCAACGAAAGCA-AAAAAGGGCAGAA
GGCACA---------ACTACGCAAAGATTATCGCTCTTCCTTTCTCTCATCTCAGTATATAAACATGCAATGCATCCAGC
CAAGATCCAACAACACCCCATCC------ATCTACTTGAAAAGGACGAGAGTTGAGAATGCCGTTCAAGCACCAGCTCCT
CCTCTCGACCGCCGTCCTGCTCGTCGCACTTGCCGCAGGGTCGGCCAGCTTCAGGGACCGATGCGTTCCAGGGCGGGAGA
TCACATACGAGTCGCTTAACGCCCGCCGCGAGTACGCGGTCAGACAAACATGCGGCTACTACCTCTCCGCCGAGAGGCAG
AAGAGGCGGTGCTGCGACGAGCTGTCCAAGGTCCCGGAGCTGTGCTGGTGCGAGGTGCTGCGCATCCTCATGGACAGGAG
AGTGACTAAGGAGGGCGTGGTCAAGGGCAGCCTCCTTCAGGACATGTCCAGATGCAAAAAGCTGACGAGGGAGTTCATCG
CGGGCATCGTCGGCCGGGAGTAGTGCAACTTGGAGACCGTCTTCGGGCGGTACCATTACTGCCCGTCCGAATATCCTGGA
CCTGAAGTGGTCGTGTAACTTT----ATAAATAGCTCGAGCGTGAATAAGCCTGTTGCTCGATCCATGGACGAATCGCAT
ATGTGTATCCATGCGCATGTGCGAAAAATATGGCAACAAAGAGCATCCGAGAGGATGATGTTAGTCTTTTGTTAAGGTGT
GGAG--GTTATACTAGTGCAGAAAAGCT----TATGGTGTGTTTGATTGCCGTGCTATTTTTTGTGTTTCCCCAG--AGT
GTCTCGATTGAGTGTGTATGGGGTAATATAATACAACCTCTAGTCCATGTTGTGCAC--GTCGTTTGGTTGCCCGCAATG
TCACAAGTTACATGAGAGAAGAAACGCCAGCACTGCGTTTGGTTACTTGTTTGTGCTGCCTAGATGCAAAGTTTGGTTGT
TTCCTTATGTGTACACTGATGATTACTCTCACCTCTTTTTTGCATGGTGAGCTTATCTTATTGAAAGAGGCTTTCGTCCT
A-------CTTTATACATAAAGCAAAGCCCGAACAACATACAAAGGTAGCTCACACGCACACCAACCCTGCTGGGGATTC
CAGCTTTACAATATAAGTACAAAGAGGCTAAAAGCCAGAGACCTTATAAACAGAAACCAAGCAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr4D_801
TAG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTAGTTAGCCTTTTATCGTACATGACATCCAAGTTTCCATTATGCGGGACTCCAACA--------------------
--------------------------ATTATCGCTCTTCCTTTCTCTCA-----GTATATAAACATGCAATACATCCAGC
CAAGATCCAACAACACCCCATCTACTTCTAT----TTGAAAAGGAC--GAGTTGAGAATGGCGTTCAAGCACCAGCTCAT
CCTCTCGACCGCCATCCTGCTCGCCGTCCTTGCCGCGGCGTCGGCCAGCTTCAAGGACCAATGCGTTCCAGGGCGGGAGA
TCACATACGACTCGCTTAACGCCTGCCGCGAGTACGCGGTCAGACAAACATGCGGCTACTACCTCTCCGCCGAGAGGCAG
AAGAGGCGGTGCTGCGACGAACTGTCCAAGGTCCCGGAGCTCTGCCGGTGCGAGGTGCTGCACATCCTCATGGATGGGAG
AGTAACTAAGGAGGGTGTGGTTAAGGGCAGCCTCCTCCAGGACATGTCCGGATGCAAAAAGTTGACGAGGGAGTTCATCG
CGGGCATCGTCGGGCGGGAGGAGTGCAACTTGGAGACGGTCTTCGGGCGGTATCATTACTGCCCGACCCAATACCGAT--
CCTGAAGTGGCCGTGTAACTTTACAAATAAATAGCTCGAGCGTGAATAAGCTTGTTGCTCCATCGATGGACTAATCGCAT
ATGTATATCTATGCGCATGTGCGGAAAATATGGCAACAAAGAGCATCCGTGAGGATAATGTTAATCTTCTGTTAAGATGT
GCGGCAGTTATACTAGTGCAGAAAAGCTTATATATGGTGTGTTTGATTGCCGTGCTATTTTTTGTGTTTCCCCAGAGAGT
GTCTCGGTTGAGTGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>SNPs
--S--------------------S------------S---------S-S-------------------------------
-----------------------------------------------S-S---------------S--------SS-S-S
---S--------S---S---------------S----------------S------S----------S--S---------
----------------------------------------S---------------------------------------
--S----------------------------------------S-------S----------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
-------------------------------------------------------------------SS---S-S-----
-------------------------------------------S---------------------------S--------
---------------------------------------------------------------------S----------
----------------------------------------------------S-------S--SSSS----------S--
-S----SSSSSSSSS----S--------S----S------------SS-------------S--------------S---
---------------------------------------------S----------------------------------
------------------------------------------------------------------S-------------
--S---------------------------------------------------------------------------S-
-------S-------------------------------S----------------------------------------
-------------------------------------S------------------------------------------
-------------------------------S-----S--------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------------------------------SS---S--
-S----------------------S-----------S--------------------SS---------------S---S-
----S--------------------S-S-----S-----------S-----------------------SS---------
--SS---------------------------------S-SSSS---S---S---S-SSSS--SSSSS-SSSSS-SS--SS
SSSSSSSS----S--S---------S-S-------S-S-------S----------S-----------SSS---------
S--S--------------------S-S-S------SS--S----SS------S---S-------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_861
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATTACGCGGGATTCCAACGT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_2422
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ATCCCGAGATGACCTTCCCA-------------------------------
