Multiple sequence alignment - TraesCS4B01G249100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G249100 chr4B 100.000 2739 0 0 1 2739 515053148 515050410 0.000000e+00 5059.0
1 TraesCS4B01G249100 chr4B 92.713 247 15 2 1249 1495 514747896 514747653 1.210000e-93 353.0
2 TraesCS4B01G249100 chr4B 87.025 316 30 6 1184 1496 517622695 517623002 2.020000e-91 346.0
3 TraesCS4B01G249100 chr4D 91.108 821 38 11 1725 2518 418567554 418566742 0.000000e+00 1079.0
4 TraesCS4B01G249100 chr4D 91.537 579 28 6 1 565 418569857 418569286 0.000000e+00 778.0
5 TraesCS4B01G249100 chr4D 94.051 353 13 5 1148 1496 418568633 418568285 1.870000e-146 529.0
6 TraesCS4B01G249100 chr4D 88.814 295 25 6 1205 1495 418398318 418398028 3.350000e-94 355.0
7 TraesCS4B01G249100 chr4D 87.066 317 28 8 1184 1496 419461409 419461716 2.020000e-91 346.0
8 TraesCS4B01G249100 chr4D 94.030 201 5 2 1492 1692 418567752 418567559 5.730000e-77 298.0
9 TraesCS4B01G249100 chr4A 92.025 652 33 9 842 1486 46282847 46283486 0.000000e+00 898.0
10 TraesCS4B01G249100 chr4A 84.430 790 37 31 1492 2243 46283911 46284652 0.000000e+00 699.0
11 TraesCS4B01G249100 chr4A 92.111 469 17 6 1 458 46282221 46282680 0.000000e+00 643.0
12 TraesCS4B01G249100 chr4A 87.382 317 27 8 1184 1496 45105484 45105177 4.340000e-93 351.0
13 TraesCS4B01G249100 chr4A 87.066 317 28 9 1184 1496 46423531 46423838 2.020000e-91 346.0
14 TraesCS4B01G249100 chr4A 94.915 59 3 0 747 805 46282781 46282839 2.900000e-15 93.5
15 TraesCS4B01G249100 chrUn 92.713 247 15 2 1249 1495 393375236 393374993 1.210000e-93 353.0
16 TraesCS4B01G249100 chr2A 83.471 121 15 2 1184 1304 605762818 605762933 1.040000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G249100 chr4B 515050410 515053148 2738 True 5059.000 5059 100.00000 1 2739 1 chr4B.!!$R2 2738
1 TraesCS4B01G249100 chr4D 418566742 418569857 3115 True 671.000 1079 92.68150 1 2518 4 chr4D.!!$R2 2517
2 TraesCS4B01G249100 chr4A 46282221 46284652 2431 False 583.375 898 90.87025 1 2243 4 chr4A.!!$F2 2242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 707 0.177836 TATGTCCCGCCATGTGACTG 59.822 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2343 3097 0.107017 ATCCACCCGCTGATTCAAGG 60.107 55.0 1.86 1.86 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 120 1.002888 CAGATGGATGGATTCGGGGAG 59.997 57.143 0.00 0.00 0.00 4.30
302 320 5.065218 CCCACAATCTGATTCGGTAAAGAAG 59.935 44.000 0.00 0.00 33.19 2.85
352 370 5.047731 TGAGTAGACTGTCTCTTTCATGTGG 60.048 44.000 14.62 0.00 0.00 4.17
363 381 5.716703 TCTCTTTCATGTGGATCTACAGTCA 59.283 40.000 17.42 1.09 33.44 3.41
425 443 6.431234 CCTACACCATCTTATTTCTATTGGCC 59.569 42.308 0.00 0.00 0.00 5.36
468 487 6.238953 GCAAGATTTGTCTGCAATCCTATGAT 60.239 38.462 0.00 0.00 34.18 2.45
496 517 5.803020 AGAAACATTTGTCTTCCTATCGC 57.197 39.130 0.00 0.00 0.00 4.58
510 531 2.359900 CTATCGCTGGCCTTTGAAGTT 58.640 47.619 3.32 0.00 0.00 2.66
511 532 1.168714 ATCGCTGGCCTTTGAAGTTC 58.831 50.000 3.32 0.00 0.00 3.01
514 535 0.600057 GCTGGCCTTTGAAGTTCTGG 59.400 55.000 3.32 5.26 0.00 3.86
515 536 1.986882 CTGGCCTTTGAAGTTCTGGT 58.013 50.000 3.32 0.00 0.00 4.00
517 538 3.690460 CTGGCCTTTGAAGTTCTGGTAT 58.310 45.455 3.32 0.00 0.00 2.73
518 539 4.843728 CTGGCCTTTGAAGTTCTGGTATA 58.156 43.478 3.32 0.00 0.00 1.47
519 540 4.843728 TGGCCTTTGAAGTTCTGGTATAG 58.156 43.478 3.32 0.00 0.00 1.31
520 541 4.288626 TGGCCTTTGAAGTTCTGGTATAGT 59.711 41.667 3.32 0.00 0.00 2.12
522 543 6.157994 TGGCCTTTGAAGTTCTGGTATAGTAT 59.842 38.462 3.32 0.00 0.00 2.12
524 545 7.226918 GGCCTTTGAAGTTCTGGTATAGTATTC 59.773 40.741 4.17 0.00 0.00 1.75
529 550 9.670442 TTGAAGTTCTGGTATAGTATTCCCTAT 57.330 33.333 4.17 0.00 0.00 2.57
549 570 4.630644 ATATGGGCAATGAGACAGTAGG 57.369 45.455 0.00 0.00 0.00 3.18
550 571 0.253044 TGGGCAATGAGACAGTAGGC 59.747 55.000 0.00 0.00 0.00 3.93
572 646 3.489229 CCTGATTGCACATGAGATTGCTG 60.489 47.826 0.00 0.00 39.62 4.41
579 653 4.945543 TGCACATGAGATTGCTGAGTTTAT 59.054 37.500 0.00 0.00 39.62 1.40
633 707 0.177836 TATGTCCCGCCATGTGACTG 59.822 55.000 0.00 0.00 0.00 3.51
640 714 0.462581 CGCCATGTGACTGCCTGTAT 60.463 55.000 0.00 0.00 0.00 2.29
655 729 4.935205 TGCCTGTATTGCGGATGATTATAC 59.065 41.667 0.00 0.00 0.00 1.47
656 730 4.935205 GCCTGTATTGCGGATGATTATACA 59.065 41.667 0.00 0.00 32.51 2.29
662 736 8.652463 TGTATTGCGGATGATTATACAAATACG 58.348 33.333 9.15 0.00 33.27 3.06
663 737 7.667043 ATTGCGGATGATTATACAAATACGT 57.333 32.000 0.00 0.00 0.00 3.57
664 738 7.485418 TTGCGGATGATTATACAAATACGTT 57.515 32.000 0.00 0.00 0.00 3.99
665 739 8.590719 TTGCGGATGATTATACAAATACGTTA 57.409 30.769 0.00 0.00 0.00 3.18
666 740 8.766000 TGCGGATGATTATACAAATACGTTAT 57.234 30.769 0.00 0.00 0.00 1.89
685 759 8.974060 ACGTTATTTCATTTCCTGTATATGGT 57.026 30.769 0.00 0.00 0.00 3.55
706 780 2.024273 TGGGGTTGAAAGGTGTTTGGTA 60.024 45.455 0.00 0.00 0.00 3.25
743 819 1.762708 TTATGCCCTTGTTGCTAGGC 58.237 50.000 0.00 0.00 45.96 3.93
801 886 1.135373 CACTGGAGCTCGACACGTAAT 60.135 52.381 7.83 0.00 0.00 1.89
811 896 1.202417 CGACACGTAATGGCTGGAGAT 60.202 52.381 0.00 0.00 31.94 2.75
818 903 2.431954 AATGGCTGGAGATGTTCCTG 57.568 50.000 0.00 0.00 46.92 3.86
828 913 1.840635 AGATGTTCCTGAAGTAGCCCC 59.159 52.381 0.00 0.00 0.00 5.80
830 915 1.440618 TGTTCCTGAAGTAGCCCCAA 58.559 50.000 0.00 0.00 0.00 4.12
831 916 1.073284 TGTTCCTGAAGTAGCCCCAAC 59.927 52.381 0.00 0.00 0.00 3.77
833 918 1.440618 TCCTGAAGTAGCCCCAACAA 58.559 50.000 0.00 0.00 0.00 2.83
834 919 1.351017 TCCTGAAGTAGCCCCAACAAG 59.649 52.381 0.00 0.00 0.00 3.16
835 920 1.168714 CTGAAGTAGCCCCAACAAGC 58.831 55.000 0.00 0.00 0.00 4.01
836 921 0.251165 TGAAGTAGCCCCAACAAGCC 60.251 55.000 0.00 0.00 0.00 4.35
837 922 1.303317 AAGTAGCCCCAACAAGCCG 60.303 57.895 0.00 0.00 0.00 5.52
838 923 2.033602 GTAGCCCCAACAAGCCGT 59.966 61.111 0.00 0.00 0.00 5.68
839 924 1.196104 AGTAGCCCCAACAAGCCGTA 61.196 55.000 0.00 0.00 0.00 4.02
843 931 1.510844 CCCCAACAAGCCGTATTGC 59.489 57.895 0.00 0.00 33.28 3.56
896 985 3.309954 GGAGGAATCTGTTGTTACATCGC 59.690 47.826 0.00 0.00 32.86 4.58
904 993 3.884169 TGTTGTTACATCGCTGCTTTTC 58.116 40.909 0.00 0.00 0.00 2.29
906 995 2.778299 TGTTACATCGCTGCTTTTCCT 58.222 42.857 0.00 0.00 0.00 3.36
919 1009 5.772169 GCTGCTTTTCCTTCCCTATATGATT 59.228 40.000 0.00 0.00 0.00 2.57
921 1011 5.536161 TGCTTTTCCTTCCCTATATGATTGC 59.464 40.000 0.00 0.00 0.00 3.56
928 1018 5.471456 CCTTCCCTATATGATTGCTTCACAC 59.529 44.000 0.00 0.00 37.11 3.82
929 1019 5.894298 TCCCTATATGATTGCTTCACACT 57.106 39.130 0.00 0.00 37.11 3.55
930 1020 6.994421 TCCCTATATGATTGCTTCACACTA 57.006 37.500 0.00 0.00 37.11 2.74
931 1021 7.559335 TCCCTATATGATTGCTTCACACTAT 57.441 36.000 0.00 0.00 37.11 2.12
932 1022 7.977818 TCCCTATATGATTGCTTCACACTATT 58.022 34.615 0.00 0.00 37.11 1.73
935 1025 8.933807 CCTATATGATTGCTTCACACTATTGAG 58.066 37.037 0.00 0.00 37.11 3.02
936 1026 9.702494 CTATATGATTGCTTCACACTATTGAGA 57.298 33.333 0.00 0.00 37.11 3.27
937 1027 6.922247 ATGATTGCTTCACACTATTGAGAG 57.078 37.500 0.00 0.00 37.11 3.20
1025 1121 0.922626 GAGGAGAAGGCCTTTCCCAT 59.077 55.000 28.67 18.72 38.73 4.00
1068 1164 4.704965 TCTTCATCATCATGCTCTCCAAG 58.295 43.478 0.00 0.00 0.00 3.61
1128 1266 0.452987 CGTGATGCTTGGTCATTGGG 59.547 55.000 0.00 0.00 0.00 4.12
1134 1272 1.318158 GCTTGGTCATTGGGCTCTGG 61.318 60.000 0.00 0.00 0.00 3.86
1135 1273 0.682209 CTTGGTCATTGGGCTCTGGG 60.682 60.000 0.00 0.00 0.00 4.45
1136 1274 1.434513 TTGGTCATTGGGCTCTGGGT 61.435 55.000 0.00 0.00 0.00 4.51
1137 1275 1.384191 GGTCATTGGGCTCTGGGTT 59.616 57.895 0.00 0.00 0.00 4.11
1138 1276 0.251787 GGTCATTGGGCTCTGGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
1139 1277 0.890683 GTCATTGGGCTCTGGGTTTG 59.109 55.000 0.00 0.00 0.00 2.93
1140 1278 0.251742 TCATTGGGCTCTGGGTTTGG 60.252 55.000 0.00 0.00 0.00 3.28
1141 1279 0.542702 CATTGGGCTCTGGGTTTGGT 60.543 55.000 0.00 0.00 0.00 3.67
1142 1280 1.080638 ATTGGGCTCTGGGTTTGGTA 58.919 50.000 0.00 0.00 0.00 3.25
1143 1281 0.111639 TTGGGCTCTGGGTTTGGTAC 59.888 55.000 0.00 0.00 0.00 3.34
1144 1282 0.770557 TGGGCTCTGGGTTTGGTACT 60.771 55.000 0.00 0.00 0.00 2.73
1145 1283 0.404426 GGGCTCTGGGTTTGGTACTT 59.596 55.000 0.00 0.00 0.00 2.24
1146 1284 1.203013 GGGCTCTGGGTTTGGTACTTT 60.203 52.381 0.00 0.00 0.00 2.66
1176 1323 5.290885 GGTTGGTTCAACACTTGTTCAATTC 59.709 40.000 12.06 0.00 45.11 2.17
1181 1328 5.913137 TCAACACTTGTTCAATTCCAACT 57.087 34.783 0.00 0.00 35.83 3.16
1448 1598 4.742274 CCGTCAAGGTGTTCGACA 57.258 55.556 0.00 0.00 34.51 4.35
1640 2346 2.812542 TTCGTGGAGTGATCGGTGCG 62.813 60.000 0.00 0.00 0.00 5.34
1650 2356 4.812476 TCGGTGCGGGCGATCAAG 62.812 66.667 0.00 0.00 0.00 3.02
1666 2372 1.133598 TCAAGTGTATCAGCCGTACGG 59.866 52.381 30.06 30.06 38.57 4.02
1721 2427 3.533606 ACGATGAGGAGAATGGAGTTG 57.466 47.619 0.00 0.00 0.00 3.16
1814 2527 3.959943 GCTAGTAGCAGCAGAGTAACTC 58.040 50.000 17.47 0.00 41.89 3.01
1815 2528 3.630312 GCTAGTAGCAGCAGAGTAACTCT 59.370 47.826 17.47 0.00 40.44 3.24
1816 2529 4.817464 GCTAGTAGCAGCAGAGTAACTCTA 59.183 45.833 17.47 0.00 38.90 2.43
1838 2551 7.229308 TCTATAGAGAATAAACCGCCTGACTA 58.771 38.462 0.00 0.00 0.00 2.59
1873 2592 5.060077 CGTGTGCAAAAATGATGAGATTGTC 59.940 40.000 0.00 0.00 0.00 3.18
1877 2596 4.676196 GCAAAAATGATGAGATTGTCCGCT 60.676 41.667 0.00 0.00 0.00 5.52
1888 2607 5.705441 TGAGATTGTCCGCTTAATTTCTTGT 59.295 36.000 0.00 0.00 0.00 3.16
1913 2635 8.345565 GTCTGAAATTGTCATCTTTGTACAAGT 58.654 33.333 8.56 0.00 36.62 3.16
1914 2636 8.344831 TCTGAAATTGTCATCTTTGTACAAGTG 58.655 33.333 8.56 9.42 36.62 3.16
2028 2750 5.696724 CGATATGGGTTTACAAGAGATGGAC 59.303 44.000 0.00 0.00 0.00 4.02
2097 2825 3.026879 CGCTAGCTCACATCCGCG 61.027 66.667 13.93 0.00 34.50 6.46
2125 2853 4.934797 TCAGGAATCAGGATCCACTTTT 57.065 40.909 15.82 1.55 39.55 2.27
2126 2854 6.581388 ATCAGGAATCAGGATCCACTTTTA 57.419 37.500 15.82 0.00 39.55 1.52
2202 2952 3.775654 GCTACGGCCAGCTCCTGT 61.776 66.667 7.81 1.38 38.57 4.00
2203 2953 2.423898 GCTACGGCCAGCTCCTGTA 61.424 63.158 7.81 0.00 38.57 2.74
2204 2954 1.736586 CTACGGCCAGCTCCTGTAG 59.263 63.158 2.24 12.93 31.91 2.74
2214 2968 2.029743 CTCCTGTAGCTCTCTCGGC 58.970 63.158 0.00 0.00 0.00 5.54
2267 3021 2.029964 AATGCGTTGTCGACCCGT 59.970 55.556 21.03 4.77 39.71 5.28
2271 3025 2.732094 CGTTGTCGACCCGTCACC 60.732 66.667 14.12 0.00 39.71 4.02
2273 3027 4.651008 TTGTCGACCCGTCACCGC 62.651 66.667 14.12 0.00 0.00 5.68
2301 3055 1.133853 GGGCAGCATGAATCCTTCTCT 60.134 52.381 0.00 0.00 39.69 3.10
2310 3064 7.120285 CAGCATGAATCCTTCTCTTTTTCTGTA 59.880 37.037 0.00 0.00 39.69 2.74
2339 3093 9.704098 GTTATTACAAGCAAATTACTACTGCTC 57.296 33.333 2.19 0.00 45.50 4.26
2343 3097 5.292101 ACAAGCAAATTACTACTGCTCGATC 59.708 40.000 2.19 0.00 45.50 3.69
2358 3112 0.179073 CGATCCTTGAATCAGCGGGT 60.179 55.000 1.72 0.00 0.00 5.28
2423 3180 0.725784 CTGCAGCCGTAAAAACAGCG 60.726 55.000 0.00 0.00 0.00 5.18
2432 3189 3.483574 CCGTAAAAACAGCGCTATGACAG 60.484 47.826 10.99 0.00 0.00 3.51
2456 3213 1.616865 TCAGTCAGGTGAGTTTACCCG 59.383 52.381 0.00 0.00 41.83 5.28
2457 3214 0.320697 AGTCAGGTGAGTTTACCCGC 59.679 55.000 0.00 0.00 41.83 6.13
2458 3215 0.034337 GTCAGGTGAGTTTACCCGCA 59.966 55.000 0.00 0.00 41.83 5.69
2460 3217 0.872388 CAGGTGAGTTTACCCGCAAC 59.128 55.000 0.00 0.00 41.83 4.17
2461 3218 0.470766 AGGTGAGTTTACCCGCAACA 59.529 50.000 0.00 0.00 41.83 3.33
2464 3221 2.099427 GGTGAGTTTACCCGCAACAAAA 59.901 45.455 0.00 0.00 34.56 2.44
2465 3222 3.368495 GTGAGTTTACCCGCAACAAAAG 58.632 45.455 0.00 0.00 0.00 2.27
2468 3225 4.158025 TGAGTTTACCCGCAACAAAAGAAA 59.842 37.500 0.00 0.00 0.00 2.52
2470 3227 5.666462 AGTTTACCCGCAACAAAAGAAAAT 58.334 33.333 0.00 0.00 0.00 1.82
2481 3238 6.198966 GCAACAAAAGAAAATAGGTGTCAGTG 59.801 38.462 0.00 0.00 0.00 3.66
2494 3251 4.286032 AGGTGTCAGTGCTAAGGTGATTTA 59.714 41.667 0.00 0.00 0.00 1.40
2537 3294 8.912988 TGATCTAACATTGTAAAATGGAATCCC 58.087 33.333 10.41 0.00 34.56 3.85
2538 3295 7.654022 TCTAACATTGTAAAATGGAATCCCC 57.346 36.000 10.41 0.00 34.56 4.81
2546 3303 4.700887 TGGAATCCCCACCTCCAA 57.299 55.556 0.00 0.00 40.82 3.53
2547 3304 2.397815 TGGAATCCCCACCTCCAAG 58.602 57.895 0.00 0.00 40.82 3.61
2548 3305 0.477597 TGGAATCCCCACCTCCAAGT 60.478 55.000 0.00 0.00 40.82 3.16
2549 3306 1.203505 TGGAATCCCCACCTCCAAGTA 60.204 52.381 0.00 0.00 40.82 2.24
2550 3307 1.920351 GGAATCCCCACCTCCAAGTAA 59.080 52.381 0.00 0.00 34.14 2.24
2551 3308 2.356844 GGAATCCCCACCTCCAAGTAAC 60.357 54.545 0.00 0.00 34.14 2.50
2552 3309 2.053747 ATCCCCACCTCCAAGTAACA 57.946 50.000 0.00 0.00 0.00 2.41
2553 3310 2.053747 TCCCCACCTCCAAGTAACAT 57.946 50.000 0.00 0.00 0.00 2.71
2554 3311 2.354328 TCCCCACCTCCAAGTAACATT 58.646 47.619 0.00 0.00 0.00 2.71
2555 3312 2.719705 TCCCCACCTCCAAGTAACATTT 59.280 45.455 0.00 0.00 0.00 2.32
2556 3313 3.141272 TCCCCACCTCCAAGTAACATTTT 59.859 43.478 0.00 0.00 0.00 1.82
2557 3314 3.901222 CCCCACCTCCAAGTAACATTTTT 59.099 43.478 0.00 0.00 0.00 1.94
2579 3336 6.486253 TTTTCAGCTCACATAGAACATCAC 57.514 37.500 0.00 0.00 0.00 3.06
2580 3337 5.411831 TTCAGCTCACATAGAACATCACT 57.588 39.130 0.00 0.00 0.00 3.41
2581 3338 4.752146 TCAGCTCACATAGAACATCACTG 58.248 43.478 0.00 0.00 0.00 3.66
2582 3339 3.309138 CAGCTCACATAGAACATCACTGC 59.691 47.826 0.00 0.00 0.00 4.40
2583 3340 3.055602 AGCTCACATAGAACATCACTGCA 60.056 43.478 0.00 0.00 0.00 4.41
2584 3341 3.309138 GCTCACATAGAACATCACTGCAG 59.691 47.826 13.48 13.48 0.00 4.41
2585 3342 4.502016 CTCACATAGAACATCACTGCAGT 58.498 43.478 15.25 15.25 0.00 4.40
2586 3343 4.248058 TCACATAGAACATCACTGCAGTG 58.752 43.478 36.07 36.07 46.91 3.66
2587 3344 3.999001 CACATAGAACATCACTGCAGTGT 59.001 43.478 38.41 25.95 45.76 3.55
2588 3345 4.453478 CACATAGAACATCACTGCAGTGTT 59.547 41.667 38.41 30.53 45.76 3.32
2589 3346 5.049198 CACATAGAACATCACTGCAGTGTTT 60.049 40.000 38.41 29.72 45.76 2.83
2590 3347 5.532406 ACATAGAACATCACTGCAGTGTTTT 59.468 36.000 38.41 29.43 45.76 2.43
2591 3348 4.989279 AGAACATCACTGCAGTGTTTTT 57.011 36.364 38.41 30.34 45.76 1.94
2592 3349 4.925068 AGAACATCACTGCAGTGTTTTTC 58.075 39.130 38.41 34.40 45.76 2.29
2593 3350 3.715628 ACATCACTGCAGTGTTTTTCC 57.284 42.857 38.41 0.00 45.76 3.13
2594 3351 2.033299 ACATCACTGCAGTGTTTTTCCG 59.967 45.455 38.41 23.15 45.76 4.30
2595 3352 1.745232 TCACTGCAGTGTTTTTCCGT 58.255 45.000 38.41 4.35 45.76 4.69
2596 3353 2.088423 TCACTGCAGTGTTTTTCCGTT 58.912 42.857 38.41 2.87 45.76 4.44
2597 3354 2.159448 TCACTGCAGTGTTTTTCCGTTG 60.159 45.455 38.41 15.24 45.76 4.10
2598 3355 1.816224 ACTGCAGTGTTTTTCCGTTGT 59.184 42.857 20.97 0.00 0.00 3.32
2599 3356 2.159435 ACTGCAGTGTTTTTCCGTTGTC 60.159 45.455 20.97 0.00 0.00 3.18
2600 3357 2.088423 TGCAGTGTTTTTCCGTTGTCT 58.912 42.857 0.00 0.00 0.00 3.41
2601 3358 2.159448 TGCAGTGTTTTTCCGTTGTCTG 60.159 45.455 0.00 0.00 0.00 3.51
2602 3359 2.159435 GCAGTGTTTTTCCGTTGTCTGT 60.159 45.455 0.00 0.00 0.00 3.41
2603 3360 3.064271 GCAGTGTTTTTCCGTTGTCTGTA 59.936 43.478 0.00 0.00 0.00 2.74
2604 3361 4.437659 GCAGTGTTTTTCCGTTGTCTGTAA 60.438 41.667 0.00 0.00 0.00 2.41
2605 3362 5.632959 CAGTGTTTTTCCGTTGTCTGTAAA 58.367 37.500 0.00 0.00 0.00 2.01
2606 3363 6.087522 CAGTGTTTTTCCGTTGTCTGTAAAA 58.912 36.000 0.00 0.00 0.00 1.52
2607 3364 6.250527 CAGTGTTTTTCCGTTGTCTGTAAAAG 59.749 38.462 0.00 0.00 0.00 2.27
2608 3365 6.149807 AGTGTTTTTCCGTTGTCTGTAAAAGA 59.850 34.615 0.00 0.00 0.00 2.52
2609 3366 6.468000 GTGTTTTTCCGTTGTCTGTAAAAGAG 59.532 38.462 0.00 0.00 34.84 2.85
2610 3367 5.744666 TTTTCCGTTGTCTGTAAAAGAGG 57.255 39.130 0.00 0.00 34.84 3.69
2611 3368 4.411256 TTCCGTTGTCTGTAAAAGAGGT 57.589 40.909 0.00 0.00 34.84 3.85
2612 3369 3.724374 TCCGTTGTCTGTAAAAGAGGTG 58.276 45.455 0.00 0.00 34.84 4.00
2613 3370 2.223377 CCGTTGTCTGTAAAAGAGGTGC 59.777 50.000 0.00 0.00 34.84 5.01
2614 3371 2.869801 CGTTGTCTGTAAAAGAGGTGCA 59.130 45.455 0.00 0.00 34.84 4.57
2615 3372 3.311322 CGTTGTCTGTAAAAGAGGTGCAA 59.689 43.478 0.00 0.00 34.84 4.08
2616 3373 4.201871 CGTTGTCTGTAAAAGAGGTGCAAA 60.202 41.667 0.00 0.00 34.84 3.68
2617 3374 5.646606 GTTGTCTGTAAAAGAGGTGCAAAA 58.353 37.500 0.00 0.00 34.84 2.44
2618 3375 6.273071 GTTGTCTGTAAAAGAGGTGCAAAAT 58.727 36.000 0.00 0.00 34.84 1.82
2619 3376 7.422399 GTTGTCTGTAAAAGAGGTGCAAAATA 58.578 34.615 0.00 0.00 34.84 1.40
2620 3377 6.966021 TGTCTGTAAAAGAGGTGCAAAATAC 58.034 36.000 0.00 0.00 34.84 1.89
2621 3378 6.770785 TGTCTGTAAAAGAGGTGCAAAATACT 59.229 34.615 0.00 0.00 34.84 2.12
2622 3379 7.078228 GTCTGTAAAAGAGGTGCAAAATACTG 58.922 38.462 0.00 0.00 34.84 2.74
2623 3380 5.768317 TGTAAAAGAGGTGCAAAATACTGC 58.232 37.500 0.00 0.00 42.95 4.40
2636 3393 7.636259 GCAAAATACTGCAACATTTTAGACA 57.364 32.000 14.34 0.00 42.17 3.41
2637 3394 8.071122 GCAAAATACTGCAACATTTTAGACAA 57.929 30.769 14.34 0.00 42.17 3.18
2638 3395 8.547069 GCAAAATACTGCAACATTTTAGACAAA 58.453 29.630 14.34 0.00 42.17 2.83
2639 3396 9.848172 CAAAATACTGCAACATTTTAGACAAAC 57.152 29.630 14.34 0.00 33.66 2.93
2640 3397 9.593134 AAAATACTGCAACATTTTAGACAAACA 57.407 25.926 13.52 0.00 33.66 2.83
2641 3398 9.593134 AAATACTGCAACATTTTAGACAAACAA 57.407 25.926 0.00 0.00 0.00 2.83
2642 3399 9.762933 AATACTGCAACATTTTAGACAAACAAT 57.237 25.926 0.00 0.00 0.00 2.71
2643 3400 7.467557 ACTGCAACATTTTAGACAAACAATG 57.532 32.000 0.00 0.00 0.00 2.82
2644 3401 7.264221 ACTGCAACATTTTAGACAAACAATGA 58.736 30.769 0.00 0.00 0.00 2.57
2645 3402 7.222611 ACTGCAACATTTTAGACAAACAATGAC 59.777 33.333 0.00 0.00 0.00 3.06
2646 3403 7.264221 TGCAACATTTTAGACAAACAATGACT 58.736 30.769 0.00 0.00 37.75 3.41
2647 3404 7.434897 TGCAACATTTTAGACAAACAATGACTC 59.565 33.333 0.00 0.00 35.62 3.36
2648 3405 7.434897 GCAACATTTTAGACAAACAATGACTCA 59.565 33.333 0.00 0.00 35.62 3.41
2649 3406 9.299963 CAACATTTTAGACAAACAATGACTCAA 57.700 29.630 0.00 0.00 35.62 3.02
2651 3408 9.467258 ACATTTTAGACAAACAATGACTCAATG 57.533 29.630 0.00 0.00 38.76 2.82
2652 3409 7.928908 TTTTAGACAAACAATGACTCAATGC 57.071 32.000 0.00 0.00 35.62 3.56
2653 3410 6.631971 TTAGACAAACAATGACTCAATGCA 57.368 33.333 0.00 0.00 35.62 3.96
2654 3411 5.717078 AGACAAACAATGACTCAATGCAT 57.283 34.783 0.00 0.00 27.16 3.96
2655 3412 5.466819 AGACAAACAATGACTCAATGCATG 58.533 37.500 0.00 0.00 27.16 4.06
2656 3413 3.991773 ACAAACAATGACTCAATGCATGC 59.008 39.130 11.82 11.82 0.00 4.06
2657 3414 2.953466 ACAATGACTCAATGCATGCC 57.047 45.000 16.68 0.00 0.00 4.40
2658 3415 2.172679 ACAATGACTCAATGCATGCCA 58.827 42.857 16.68 3.91 0.00 4.92
2659 3416 2.094390 ACAATGACTCAATGCATGCCAC 60.094 45.455 16.68 0.00 0.00 5.01
2660 3417 1.842052 ATGACTCAATGCATGCCACA 58.158 45.000 16.68 0.00 0.00 4.17
2661 3418 1.618487 TGACTCAATGCATGCCACAA 58.382 45.000 16.68 0.00 0.00 3.33
2662 3419 2.172679 TGACTCAATGCATGCCACAAT 58.827 42.857 16.68 0.00 0.00 2.71
2663 3420 2.563620 TGACTCAATGCATGCCACAATT 59.436 40.909 16.68 5.11 0.00 2.32
2664 3421 3.184541 GACTCAATGCATGCCACAATTC 58.815 45.455 16.68 1.33 0.00 2.17
2665 3422 2.093869 ACTCAATGCATGCCACAATTCC 60.094 45.455 16.68 0.00 0.00 3.01
2666 3423 2.167693 CTCAATGCATGCCACAATTCCT 59.832 45.455 16.68 0.00 0.00 3.36
2667 3424 2.568062 TCAATGCATGCCACAATTCCTT 59.432 40.909 16.68 0.00 0.00 3.36
2668 3425 2.675844 CAATGCATGCCACAATTCCTTG 59.324 45.455 16.68 1.58 38.39 3.61
2669 3426 1.340088 TGCATGCCACAATTCCTTGT 58.660 45.000 16.68 0.00 46.54 3.16
2670 3427 1.693062 TGCATGCCACAATTCCTTGTT 59.307 42.857 16.68 0.00 43.05 2.83
2671 3428 2.070783 GCATGCCACAATTCCTTGTTG 58.929 47.619 6.36 0.00 43.05 3.33
2672 3429 2.690786 CATGCCACAATTCCTTGTTGG 58.309 47.619 0.00 0.00 43.05 3.77
2673 3430 3.215642 GCCACAATTCCTTGTTGGC 57.784 52.632 12.67 12.67 43.05 4.52
2674 3431 0.681175 GCCACAATTCCTTGTTGGCT 59.319 50.000 17.20 0.00 45.74 4.75
2675 3432 1.337167 GCCACAATTCCTTGTTGGCTC 60.337 52.381 17.20 0.37 45.74 4.70
2676 3433 1.273327 CCACAATTCCTTGTTGGCTCC 59.727 52.381 0.00 0.00 43.05 4.70
2677 3434 1.068333 CACAATTCCTTGTTGGCTCCG 60.068 52.381 0.00 0.00 43.05 4.63
2678 3435 1.247567 CAATTCCTTGTTGGCTCCGT 58.752 50.000 0.00 0.00 35.26 4.69
2679 3436 1.200020 CAATTCCTTGTTGGCTCCGTC 59.800 52.381 0.00 0.00 35.26 4.79
2680 3437 0.400213 ATTCCTTGTTGGCTCCGTCA 59.600 50.000 0.00 0.00 35.26 4.35
2681 3438 0.250295 TTCCTTGTTGGCTCCGTCAG 60.250 55.000 0.00 0.00 35.26 3.51
2682 3439 1.672356 CCTTGTTGGCTCCGTCAGG 60.672 63.158 0.00 0.00 39.46 3.86
2683 3440 1.071471 CTTGTTGGCTCCGTCAGGT 59.929 57.895 0.00 0.00 39.05 4.00
2684 3441 0.951040 CTTGTTGGCTCCGTCAGGTC 60.951 60.000 0.00 0.00 39.05 3.85
2685 3442 1.691195 TTGTTGGCTCCGTCAGGTCA 61.691 55.000 0.00 0.00 39.05 4.02
2686 3443 1.296715 GTTGGCTCCGTCAGGTCAT 59.703 57.895 0.00 0.00 39.05 3.06
2687 3444 0.321653 GTTGGCTCCGTCAGGTCATT 60.322 55.000 0.00 0.00 39.05 2.57
2688 3445 0.321564 TTGGCTCCGTCAGGTCATTG 60.322 55.000 0.00 0.00 39.05 2.82
2689 3446 1.191489 TGGCTCCGTCAGGTCATTGA 61.191 55.000 0.00 0.00 39.05 2.57
2690 3447 0.460987 GGCTCCGTCAGGTCATTGAG 60.461 60.000 0.00 0.00 39.05 3.02
2691 3448 0.532573 GCTCCGTCAGGTCATTGAGA 59.467 55.000 0.00 0.00 39.05 3.27
2692 3449 1.137872 GCTCCGTCAGGTCATTGAGAT 59.862 52.381 0.00 0.00 39.05 2.75
2693 3450 2.362397 GCTCCGTCAGGTCATTGAGATA 59.638 50.000 0.00 0.00 39.05 1.98
2694 3451 3.006323 GCTCCGTCAGGTCATTGAGATAT 59.994 47.826 0.00 0.00 39.05 1.63
2695 3452 4.218635 GCTCCGTCAGGTCATTGAGATATA 59.781 45.833 0.00 0.00 39.05 0.86
2696 3453 5.279006 GCTCCGTCAGGTCATTGAGATATAA 60.279 44.000 0.00 0.00 39.05 0.98
2697 3454 6.085555 TCCGTCAGGTCATTGAGATATAAC 57.914 41.667 0.00 0.00 39.05 1.89
2698 3455 5.010719 TCCGTCAGGTCATTGAGATATAACC 59.989 44.000 0.00 0.00 39.05 2.85
2699 3456 4.917998 CGTCAGGTCATTGAGATATAACCG 59.082 45.833 0.00 0.00 32.01 4.44
2700 3457 4.686554 GTCAGGTCATTGAGATATAACCGC 59.313 45.833 0.00 0.00 32.01 5.68
2701 3458 4.343814 TCAGGTCATTGAGATATAACCGCA 59.656 41.667 0.00 0.00 32.01 5.69
2702 3459 5.056480 CAGGTCATTGAGATATAACCGCAA 58.944 41.667 0.00 0.00 32.01 4.85
2703 3460 5.527214 CAGGTCATTGAGATATAACCGCAAA 59.473 40.000 0.00 0.00 32.01 3.68
2704 3461 6.038161 CAGGTCATTGAGATATAACCGCAAAA 59.962 38.462 0.00 0.00 32.01 2.44
2705 3462 6.601613 AGGTCATTGAGATATAACCGCAAAAA 59.398 34.615 0.00 0.00 32.01 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.276421 AGTTGCAGGAATCTGTAGCGT 59.724 47.619 0.00 0.00 40.54 5.07
13 14 2.977914 TCAGTTGCAGGAATCTGTAGC 58.022 47.619 0.00 0.00 42.78 3.58
15 16 5.164620 TGATTCAGTTGCAGGAATCTGTA 57.835 39.130 25.22 12.27 46.03 2.74
113 120 0.944386 TCCTTCTGCGTGCTTCAAAC 59.056 50.000 0.00 0.00 0.00 2.93
352 370 6.743110 TGCTGATAGTCAATGACTGTAGATC 58.257 40.000 24.74 18.66 43.30 2.75
425 443 2.664851 TGCCACCGAAAGTGCTCG 60.665 61.111 0.00 0.00 45.83 5.03
468 487 8.934023 ATAGGAAGACAAATGTTTCTTTACCA 57.066 30.769 0.00 0.00 32.04 3.25
496 517 1.986882 ACCAGAACTTCAAAGGCCAG 58.013 50.000 5.01 0.00 0.00 4.85
529 550 2.104792 GCCTACTGTCTCATTGCCCATA 59.895 50.000 0.00 0.00 0.00 2.74
549 570 2.798499 GCAATCTCATGTGCAATCAGGC 60.798 50.000 1.41 0.00 40.58 4.85
550 571 2.688446 AGCAATCTCATGTGCAATCAGG 59.312 45.455 8.54 0.00 43.42 3.86
579 653 9.936759 AGAAACCAACAGATTTTAAACTGAAAA 57.063 25.926 11.61 0.00 37.54 2.29
589 663 6.266786 ACCCGAATAAGAAACCAACAGATTTT 59.733 34.615 0.00 0.00 0.00 1.82
628 702 0.541392 ATCCGCAATACAGGCAGTCA 59.459 50.000 0.00 0.00 0.00 3.41
633 707 4.935205 TGTATAATCATCCGCAATACAGGC 59.065 41.667 0.00 0.00 31.32 4.85
640 714 7.485418 AACGTATTTGTATAATCATCCGCAA 57.515 32.000 0.00 0.00 0.00 4.85
662 736 8.576442 CCCACCATATACAGGAAATGAAATAAC 58.424 37.037 0.24 0.00 0.00 1.89
663 737 7.728083 CCCCACCATATACAGGAAATGAAATAA 59.272 37.037 0.24 0.00 0.00 1.40
664 738 7.147033 ACCCCACCATATACAGGAAATGAAATA 60.147 37.037 0.24 0.00 0.00 1.40
665 739 6.077322 CCCCACCATATACAGGAAATGAAAT 58.923 40.000 0.24 0.00 0.00 2.17
666 740 5.043732 ACCCCACCATATACAGGAAATGAAA 60.044 40.000 0.24 0.00 0.00 2.69
672 746 3.465832 TCAACCCCACCATATACAGGAA 58.534 45.455 0.24 0.00 0.00 3.36
677 751 3.951680 CACCTTTCAACCCCACCATATAC 59.048 47.826 0.00 0.00 0.00 1.47
685 759 1.273324 ACCAAACACCTTTCAACCCCA 60.273 47.619 0.00 0.00 0.00 4.96
706 780 2.496899 AATCAAACATCAGAGGCGGT 57.503 45.000 0.00 0.00 0.00 5.68
743 819 7.047891 TGTATTGTGAGCTCCTAATTAACTGG 58.952 38.462 12.15 0.00 0.00 4.00
811 896 1.073284 GTTGGGGCTACTTCAGGAACA 59.927 52.381 0.00 0.00 0.00 3.18
818 903 1.305930 CGGCTTGTTGGGGCTACTTC 61.306 60.000 0.00 0.00 0.00 3.01
828 913 0.456653 GGCAGCAATACGGCTTGTTG 60.457 55.000 10.35 10.35 42.71 3.33
830 915 2.398554 CGGCAGCAATACGGCTTGT 61.399 57.895 0.00 0.00 42.71 3.16
831 916 2.309764 GACGGCAGCAATACGGCTTG 62.310 60.000 0.00 0.00 42.71 4.01
834 919 1.644786 AAAGACGGCAGCAATACGGC 61.645 55.000 0.00 0.00 38.96 5.68
835 920 0.373716 GAAAGACGGCAGCAATACGG 59.626 55.000 0.00 0.00 0.00 4.02
836 921 1.359848 AGAAAGACGGCAGCAATACG 58.640 50.000 0.00 0.00 0.00 3.06
837 922 3.062234 GTGTAGAAAGACGGCAGCAATAC 59.938 47.826 0.00 0.00 0.00 1.89
838 923 3.259064 GTGTAGAAAGACGGCAGCAATA 58.741 45.455 0.00 0.00 0.00 1.90
839 924 2.076863 GTGTAGAAAGACGGCAGCAAT 58.923 47.619 0.00 0.00 0.00 3.56
843 931 1.060713 CGTGTGTAGAAAGACGGCAG 58.939 55.000 0.00 0.00 33.53 4.85
896 985 6.294397 GCAATCATATAGGGAAGGAAAAGCAG 60.294 42.308 0.00 0.00 0.00 4.24
904 993 5.471456 GTGTGAAGCAATCATATAGGGAAGG 59.529 44.000 0.00 0.00 40.97 3.46
906 995 6.252599 AGTGTGAAGCAATCATATAGGGAA 57.747 37.500 0.00 0.00 40.97 3.97
919 1009 4.089361 TCTCCTCTCAATAGTGTGAAGCA 58.911 43.478 0.00 0.00 0.00 3.91
921 1011 4.099266 CCCTCTCCTCTCAATAGTGTGAAG 59.901 50.000 0.00 0.00 0.00 3.02
928 1018 2.892852 CTCTGCCCTCTCCTCTCAATAG 59.107 54.545 0.00 0.00 0.00 1.73
929 1019 2.425538 CCTCTGCCCTCTCCTCTCAATA 60.426 54.545 0.00 0.00 0.00 1.90
930 1020 1.692121 CCTCTGCCCTCTCCTCTCAAT 60.692 57.143 0.00 0.00 0.00 2.57
931 1021 0.325110 CCTCTGCCCTCTCCTCTCAA 60.325 60.000 0.00 0.00 0.00 3.02
932 1022 1.309347 CCTCTGCCCTCTCCTCTCA 59.691 63.158 0.00 0.00 0.00 3.27
935 1025 1.970352 CTTGCCTCTGCCCTCTCCTC 61.970 65.000 0.00 0.00 36.33 3.71
936 1026 1.994507 CTTGCCTCTGCCCTCTCCT 60.995 63.158 0.00 0.00 36.33 3.69
937 1027 2.588989 CTTGCCTCTGCCCTCTCC 59.411 66.667 0.00 0.00 36.33 3.71
1025 1121 2.417339 CTCGAAACCTGACGAGTCAA 57.583 50.000 7.38 0.00 46.90 3.18
1068 1164 3.725490 ACGTACCAGTTTCTTCAAGGAC 58.275 45.455 0.00 0.00 0.00 3.85
1128 1266 1.886542 CCAAAGTACCAAACCCAGAGC 59.113 52.381 0.00 0.00 0.00 4.09
1134 1272 4.185394 CAACCAAACCAAAGTACCAAACC 58.815 43.478 0.00 0.00 0.00 3.27
1135 1273 4.185394 CCAACCAAACCAAAGTACCAAAC 58.815 43.478 0.00 0.00 0.00 2.93
1136 1274 3.838903 ACCAACCAAACCAAAGTACCAAA 59.161 39.130 0.00 0.00 0.00 3.28
1137 1275 3.442076 ACCAACCAAACCAAAGTACCAA 58.558 40.909 0.00 0.00 0.00 3.67
1138 1276 3.103080 ACCAACCAAACCAAAGTACCA 57.897 42.857 0.00 0.00 0.00 3.25
1139 1277 3.447944 TGAACCAACCAAACCAAAGTACC 59.552 43.478 0.00 0.00 0.00 3.34
1140 1278 4.722361 TGAACCAACCAAACCAAAGTAC 57.278 40.909 0.00 0.00 0.00 2.73
1141 1279 4.527038 TGTTGAACCAACCAAACCAAAGTA 59.473 37.500 7.29 0.00 42.96 2.24
1142 1280 3.325135 TGTTGAACCAACCAAACCAAAGT 59.675 39.130 7.29 0.00 42.96 2.66
1143 1281 3.682377 GTGTTGAACCAACCAAACCAAAG 59.318 43.478 7.29 0.00 42.96 2.77
1144 1282 3.325135 AGTGTTGAACCAACCAAACCAAA 59.675 39.130 7.29 0.00 42.96 3.28
1145 1283 2.900546 AGTGTTGAACCAACCAAACCAA 59.099 40.909 7.29 0.00 42.96 3.67
1146 1284 2.530701 AGTGTTGAACCAACCAAACCA 58.469 42.857 7.29 0.00 42.96 3.67
1176 1323 1.529010 TGGGTCAAGCAGCAGTTGG 60.529 57.895 0.00 0.00 0.00 3.77
1448 1598 2.827190 CCTGCGGCACATGCTCAT 60.827 61.111 0.00 0.00 41.70 2.90
1570 2276 4.477975 CTCGTGGTCCTCGCCGTC 62.478 72.222 8.49 0.00 0.00 4.79
1629 2335 4.891727 ATCGCCCGCACCGATCAC 62.892 66.667 0.00 0.00 41.13 3.06
1640 2346 1.221414 GCTGATACACTTGATCGCCC 58.779 55.000 0.00 0.00 0.00 6.13
1666 2372 3.422303 TGATGAGCACGCCAACGC 61.422 61.111 0.00 0.00 45.53 4.84
1702 2408 3.533606 ACAACTCCATTCTCCTCATCG 57.466 47.619 0.00 0.00 0.00 3.84
1706 2412 7.511959 AAAAGTAAACAACTCCATTCTCCTC 57.488 36.000 0.00 0.00 37.50 3.71
1711 2417 7.489160 ACTGGAAAAAGTAAACAACTCCATTC 58.511 34.615 0.00 0.00 37.50 2.67
1721 2427 9.628746 TTCAAACAACTACTGGAAAAAGTAAAC 57.371 29.630 0.00 0.00 32.35 2.01
1814 2527 6.334102 AGTCAGGCGGTTTATTCTCTATAG 57.666 41.667 0.00 0.00 0.00 1.31
1815 2528 7.450634 ACATAGTCAGGCGGTTTATTCTCTATA 59.549 37.037 0.00 0.00 0.00 1.31
1816 2529 6.267928 ACATAGTCAGGCGGTTTATTCTCTAT 59.732 38.462 0.00 0.00 0.00 1.98
1838 2551 4.722700 GCACACGAGGGGGCACAT 62.723 66.667 0.00 0.00 0.00 3.21
1888 2607 8.344831 CACTTGTACAAAGATGACAATTTCAGA 58.655 33.333 10.03 0.00 37.77 3.27
1913 2635 8.666573 TGTAAACGTGAAACTGAAATTCTTACA 58.333 29.630 0.00 0.00 31.75 2.41
1914 2636 8.940924 GTGTAAACGTGAAACTGAAATTCTTAC 58.059 33.333 0.00 0.00 31.75 2.34
2028 2750 5.559227 TGCACGACGAAATTCAGATTATTG 58.441 37.500 0.00 0.00 0.00 1.90
2097 2825 5.067023 GTGGATCCTGATTCCTGATTTGAAC 59.933 44.000 14.23 0.00 0.00 3.18
2125 2853 3.446310 TTGCGTCAGTTCACTTCACTA 57.554 42.857 0.00 0.00 0.00 2.74
2126 2854 2.309528 TTGCGTCAGTTCACTTCACT 57.690 45.000 0.00 0.00 0.00 3.41
2201 2951 2.123640 AGGGGCCGAGAGAGCTAC 60.124 66.667 0.00 0.00 0.00 3.58
2202 2952 2.196229 GAGGGGCCGAGAGAGCTA 59.804 66.667 0.00 0.00 0.00 3.32
2203 2953 4.067512 TGAGGGGCCGAGAGAGCT 62.068 66.667 0.00 0.00 0.00 4.09
2204 2954 3.844090 GTGAGGGGCCGAGAGAGC 61.844 72.222 0.00 0.00 0.00 4.09
2214 2968 0.467384 ATCAGATCAAGCGTGAGGGG 59.533 55.000 8.63 0.00 37.14 4.79
2279 3033 0.464373 GAAGGATTCATGCTGCCCGA 60.464 55.000 0.00 0.00 46.62 5.14
2323 3077 4.372656 AGGATCGAGCAGTAGTAATTTGC 58.627 43.478 1.84 0.00 38.09 3.68
2332 3086 3.491619 GCTGATTCAAGGATCGAGCAGTA 60.492 47.826 1.84 0.00 33.88 2.74
2339 3093 0.179073 ACCCGCTGATTCAAGGATCG 60.179 55.000 8.86 0.00 0.00 3.69
2343 3097 0.107017 ATCCACCCGCTGATTCAAGG 60.107 55.000 1.86 1.86 0.00 3.61
2358 3112 0.189574 TGGGGAGCACCAAAAATCCA 59.810 50.000 1.58 0.00 42.91 3.41
2432 3189 2.622064 AAACTCACCTGACTGACACC 57.378 50.000 0.00 0.00 0.00 4.16
2445 3202 3.280295 TCTTTTGTTGCGGGTAAACTCA 58.720 40.909 0.00 0.00 0.00 3.41
2456 3213 6.198966 CACTGACACCTATTTTCTTTTGTTGC 59.801 38.462 0.00 0.00 0.00 4.17
2457 3214 6.198966 GCACTGACACCTATTTTCTTTTGTTG 59.801 38.462 0.00 0.00 0.00 3.33
2458 3215 6.096846 AGCACTGACACCTATTTTCTTTTGTT 59.903 34.615 0.00 0.00 0.00 2.83
2460 3217 6.076981 AGCACTGACACCTATTTTCTTTTG 57.923 37.500 0.00 0.00 0.00 2.44
2461 3218 7.040409 CCTTAGCACTGACACCTATTTTCTTTT 60.040 37.037 0.00 0.00 0.00 2.27
2464 3221 5.013183 ACCTTAGCACTGACACCTATTTTCT 59.987 40.000 0.00 0.00 0.00 2.52
2465 3222 5.122396 CACCTTAGCACTGACACCTATTTTC 59.878 44.000 0.00 0.00 0.00 2.29
2468 3225 3.838317 TCACCTTAGCACTGACACCTATT 59.162 43.478 0.00 0.00 0.00 1.73
2470 3227 2.884320 TCACCTTAGCACTGACACCTA 58.116 47.619 0.00 0.00 0.00 3.08
2512 3269 8.360390 GGGGATTCCATTTTACAATGTTAGATC 58.640 37.037 4.80 0.00 38.58 2.75
2514 3271 7.185565 TGGGGATTCCATTTTACAATGTTAGA 58.814 34.615 4.80 0.00 41.46 2.10
2515 3272 7.416964 TGGGGATTCCATTTTACAATGTTAG 57.583 36.000 4.80 0.00 41.46 2.34
2529 3286 0.477597 ACTTGGAGGTGGGGATTCCA 60.478 55.000 4.80 0.00 44.79 3.53
2530 3287 1.591768 TACTTGGAGGTGGGGATTCC 58.408 55.000 0.00 0.00 0.00 3.01
2531 3288 2.307686 TGTTACTTGGAGGTGGGGATTC 59.692 50.000 0.00 0.00 0.00 2.52
2532 3289 2.354328 TGTTACTTGGAGGTGGGGATT 58.646 47.619 0.00 0.00 0.00 3.01
2533 3290 2.053747 TGTTACTTGGAGGTGGGGAT 57.946 50.000 0.00 0.00 0.00 3.85
2534 3291 2.053747 ATGTTACTTGGAGGTGGGGA 57.946 50.000 0.00 0.00 0.00 4.81
2535 3292 2.899303 AATGTTACTTGGAGGTGGGG 57.101 50.000 0.00 0.00 0.00 4.96
2555 3312 6.712095 AGTGATGTTCTATGTGAGCTGAAAAA 59.288 34.615 0.00 0.00 0.00 1.94
2556 3313 6.148315 CAGTGATGTTCTATGTGAGCTGAAAA 59.852 38.462 0.00 0.00 0.00 2.29
2557 3314 5.640783 CAGTGATGTTCTATGTGAGCTGAAA 59.359 40.000 0.00 0.00 0.00 2.69
2558 3315 5.173664 CAGTGATGTTCTATGTGAGCTGAA 58.826 41.667 0.00 0.00 0.00 3.02
2559 3316 4.752146 CAGTGATGTTCTATGTGAGCTGA 58.248 43.478 0.00 0.00 0.00 4.26
2560 3317 3.309138 GCAGTGATGTTCTATGTGAGCTG 59.691 47.826 0.00 0.00 0.00 4.24
2561 3318 3.055602 TGCAGTGATGTTCTATGTGAGCT 60.056 43.478 0.00 0.00 0.00 4.09
2562 3319 3.264947 TGCAGTGATGTTCTATGTGAGC 58.735 45.455 0.00 0.00 0.00 4.26
2563 3320 4.502016 ACTGCAGTGATGTTCTATGTGAG 58.498 43.478 20.97 0.00 0.00 3.51
2564 3321 4.541973 ACTGCAGTGATGTTCTATGTGA 57.458 40.909 20.97 0.00 0.00 3.58
2578 3335 1.816224 ACAACGGAAAAACACTGCAGT 59.184 42.857 15.25 15.25 0.00 4.40
2579 3336 2.097466 AGACAACGGAAAAACACTGCAG 59.903 45.455 13.48 13.48 0.00 4.41
2580 3337 2.088423 AGACAACGGAAAAACACTGCA 58.912 42.857 0.00 0.00 0.00 4.41
2581 3338 2.159435 ACAGACAACGGAAAAACACTGC 60.159 45.455 0.00 0.00 0.00 4.40
2582 3339 3.757745 ACAGACAACGGAAAAACACTG 57.242 42.857 0.00 0.00 0.00 3.66
2583 3340 5.883503 TTTACAGACAACGGAAAAACACT 57.116 34.783 0.00 0.00 0.00 3.55
2584 3341 6.316319 TCTTTTACAGACAACGGAAAAACAC 58.684 36.000 0.00 0.00 0.00 3.32
2585 3342 6.403855 CCTCTTTTACAGACAACGGAAAAACA 60.404 38.462 0.00 0.00 0.00 2.83
2586 3343 5.969435 CCTCTTTTACAGACAACGGAAAAAC 59.031 40.000 0.00 0.00 0.00 2.43
2587 3344 5.648960 ACCTCTTTTACAGACAACGGAAAAA 59.351 36.000 0.00 0.00 0.00 1.94
2588 3345 5.065474 CACCTCTTTTACAGACAACGGAAAA 59.935 40.000 0.00 0.00 0.00 2.29
2589 3346 4.573201 CACCTCTTTTACAGACAACGGAAA 59.427 41.667 0.00 0.00 0.00 3.13
2590 3347 4.124238 CACCTCTTTTACAGACAACGGAA 58.876 43.478 0.00 0.00 0.00 4.30
2591 3348 3.724374 CACCTCTTTTACAGACAACGGA 58.276 45.455 0.00 0.00 0.00 4.69
2592 3349 2.223377 GCACCTCTTTTACAGACAACGG 59.777 50.000 0.00 0.00 0.00 4.44
2593 3350 2.869801 TGCACCTCTTTTACAGACAACG 59.130 45.455 0.00 0.00 0.00 4.10
2594 3351 4.893424 TTGCACCTCTTTTACAGACAAC 57.107 40.909 0.00 0.00 0.00 3.32
2595 3352 5.906113 TTTTGCACCTCTTTTACAGACAA 57.094 34.783 0.00 0.00 0.00 3.18
2596 3353 6.770785 AGTATTTTGCACCTCTTTTACAGACA 59.229 34.615 0.00 0.00 0.00 3.41
2597 3354 7.078228 CAGTATTTTGCACCTCTTTTACAGAC 58.922 38.462 0.00 0.00 0.00 3.51
2598 3355 6.293955 GCAGTATTTTGCACCTCTTTTACAGA 60.294 38.462 0.00 0.00 43.53 3.41
2599 3356 5.858581 GCAGTATTTTGCACCTCTTTTACAG 59.141 40.000 0.00 0.00 43.53 2.74
2600 3357 5.768317 GCAGTATTTTGCACCTCTTTTACA 58.232 37.500 0.00 0.00 43.53 2.41
2612 3369 7.636259 TGTCTAAAATGTTGCAGTATTTTGC 57.364 32.000 22.75 16.17 44.33 3.68
2613 3370 9.848172 GTTTGTCTAAAATGTTGCAGTATTTTG 57.152 29.630 22.75 16.06 37.16 2.44
2614 3371 9.593134 TGTTTGTCTAAAATGTTGCAGTATTTT 57.407 25.926 19.95 19.95 39.21 1.82
2615 3372 9.593134 TTGTTTGTCTAAAATGTTGCAGTATTT 57.407 25.926 4.87 4.87 0.00 1.40
2616 3373 9.762933 ATTGTTTGTCTAAAATGTTGCAGTATT 57.237 25.926 0.00 0.00 0.00 1.89
2617 3374 9.195411 CATTGTTTGTCTAAAATGTTGCAGTAT 57.805 29.630 0.00 0.00 0.00 2.12
2618 3375 8.409371 TCATTGTTTGTCTAAAATGTTGCAGTA 58.591 29.630 0.00 0.00 0.00 2.74
2619 3376 7.222611 GTCATTGTTTGTCTAAAATGTTGCAGT 59.777 33.333 0.00 0.00 0.00 4.40
2620 3377 7.436080 AGTCATTGTTTGTCTAAAATGTTGCAG 59.564 33.333 0.00 0.00 0.00 4.41
2621 3378 7.264221 AGTCATTGTTTGTCTAAAATGTTGCA 58.736 30.769 0.00 0.00 0.00 4.08
2622 3379 7.434897 TGAGTCATTGTTTGTCTAAAATGTTGC 59.565 33.333 0.00 0.00 0.00 4.17
2623 3380 8.854979 TGAGTCATTGTTTGTCTAAAATGTTG 57.145 30.769 0.00 0.00 0.00 3.33
2625 3382 9.467258 CATTGAGTCATTGTTTGTCTAAAATGT 57.533 29.630 6.82 0.00 31.00 2.71
2626 3383 8.430063 GCATTGAGTCATTGTTTGTCTAAAATG 58.570 33.333 14.71 2.90 34.44 2.32
2627 3384 8.143193 TGCATTGAGTCATTGTTTGTCTAAAAT 58.857 29.630 14.71 0.00 0.00 1.82
2628 3385 7.487484 TGCATTGAGTCATTGTTTGTCTAAAA 58.513 30.769 14.71 0.00 0.00 1.52
2629 3386 7.036996 TGCATTGAGTCATTGTTTGTCTAAA 57.963 32.000 14.71 0.00 0.00 1.85
2630 3387 6.631971 TGCATTGAGTCATTGTTTGTCTAA 57.368 33.333 14.71 0.00 0.00 2.10
2631 3388 6.614160 CATGCATTGAGTCATTGTTTGTCTA 58.386 36.000 14.71 0.00 0.00 2.59
2632 3389 5.466819 CATGCATTGAGTCATTGTTTGTCT 58.533 37.500 14.71 0.00 0.00 3.41
2633 3390 4.090930 GCATGCATTGAGTCATTGTTTGTC 59.909 41.667 14.21 7.15 0.00 3.18
2634 3391 3.991773 GCATGCATTGAGTCATTGTTTGT 59.008 39.130 14.21 0.00 0.00 2.83
2635 3392 3.369756 GGCATGCATTGAGTCATTGTTTG 59.630 43.478 21.36 12.99 0.00 2.93
2636 3393 3.007074 TGGCATGCATTGAGTCATTGTTT 59.993 39.130 21.36 2.56 0.00 2.83
2637 3394 2.563620 TGGCATGCATTGAGTCATTGTT 59.436 40.909 21.36 2.85 0.00 2.83
2638 3395 2.094390 GTGGCATGCATTGAGTCATTGT 60.094 45.455 21.36 0.00 0.00 2.71
2639 3396 2.094442 TGTGGCATGCATTGAGTCATTG 60.094 45.455 21.36 10.10 0.00 2.82
2640 3397 2.172679 TGTGGCATGCATTGAGTCATT 58.827 42.857 21.36 0.00 0.00 2.57
2641 3398 1.842052 TGTGGCATGCATTGAGTCAT 58.158 45.000 21.36 0.00 0.00 3.06
2642 3399 1.618487 TTGTGGCATGCATTGAGTCA 58.382 45.000 21.36 2.93 0.00 3.41
2643 3400 2.953466 ATTGTGGCATGCATTGAGTC 57.047 45.000 21.36 0.00 0.00 3.36
2644 3401 2.093869 GGAATTGTGGCATGCATTGAGT 60.094 45.455 21.36 1.22 0.00 3.41
2645 3402 2.167693 AGGAATTGTGGCATGCATTGAG 59.832 45.455 21.36 0.00 0.00 3.02
2646 3403 2.181125 AGGAATTGTGGCATGCATTGA 58.819 42.857 21.36 2.56 0.00 2.57
2647 3404 2.675844 CAAGGAATTGTGGCATGCATTG 59.324 45.455 21.36 5.85 0.00 2.82
2648 3405 2.303600 ACAAGGAATTGTGGCATGCATT 59.696 40.909 21.36 10.45 33.23 3.56
2649 3406 1.903860 ACAAGGAATTGTGGCATGCAT 59.096 42.857 21.36 0.42 33.23 3.96
2650 3407 1.340088 ACAAGGAATTGTGGCATGCA 58.660 45.000 21.36 2.54 33.23 3.96
2651 3408 2.070783 CAACAAGGAATTGTGGCATGC 58.929 47.619 9.90 9.90 34.99 4.06
2652 3409 2.690786 CCAACAAGGAATTGTGGCATG 58.309 47.619 0.00 0.00 41.22 4.06
2653 3410 1.002315 GCCAACAAGGAATTGTGGCAT 59.998 47.619 20.06 0.00 42.84 4.40
2654 3411 0.392336 GCCAACAAGGAATTGTGGCA 59.608 50.000 20.06 0.00 42.84 4.92
2655 3412 0.681175 AGCCAACAAGGAATTGTGGC 59.319 50.000 18.56 18.56 43.23 5.01
2656 3413 1.273327 GGAGCCAACAAGGAATTGTGG 59.727 52.381 0.00 0.84 41.22 4.17
2657 3414 1.068333 CGGAGCCAACAAGGAATTGTG 60.068 52.381 0.00 0.00 41.22 3.33
2658 3415 1.247567 CGGAGCCAACAAGGAATTGT 58.752 50.000 0.00 0.00 41.22 2.71
2659 3416 1.200020 GACGGAGCCAACAAGGAATTG 59.800 52.381 0.00 0.00 41.22 2.32
2660 3417 1.202879 TGACGGAGCCAACAAGGAATT 60.203 47.619 0.00 0.00 41.22 2.17
2661 3418 0.400213 TGACGGAGCCAACAAGGAAT 59.600 50.000 0.00 0.00 41.22 3.01
2662 3419 0.250295 CTGACGGAGCCAACAAGGAA 60.250 55.000 0.00 0.00 41.22 3.36
2663 3420 1.371183 CTGACGGAGCCAACAAGGA 59.629 57.895 0.00 0.00 41.22 3.36
2664 3421 1.672356 CCTGACGGAGCCAACAAGG 60.672 63.158 0.00 0.00 41.84 3.61
2665 3422 0.951040 GACCTGACGGAGCCAACAAG 60.951 60.000 0.00 0.00 0.00 3.16
2666 3423 1.070786 GACCTGACGGAGCCAACAA 59.929 57.895 0.00 0.00 0.00 2.83
2667 3424 1.480212 ATGACCTGACGGAGCCAACA 61.480 55.000 0.00 0.00 0.00 3.33
2668 3425 0.321653 AATGACCTGACGGAGCCAAC 60.322 55.000 0.00 0.00 0.00 3.77
2669 3426 0.321564 CAATGACCTGACGGAGCCAA 60.322 55.000 0.00 0.00 0.00 4.52
2670 3427 1.191489 TCAATGACCTGACGGAGCCA 61.191 55.000 0.00 0.00 0.00 4.75
2671 3428 0.460987 CTCAATGACCTGACGGAGCC 60.461 60.000 0.00 0.00 0.00 4.70
2672 3429 0.532573 TCTCAATGACCTGACGGAGC 59.467 55.000 0.00 0.00 0.00 4.70
2673 3430 4.862902 ATATCTCAATGACCTGACGGAG 57.137 45.455 0.00 0.00 0.00 4.63
2674 3431 5.010719 GGTTATATCTCAATGACCTGACGGA 59.989 44.000 0.00 0.00 0.00 4.69
2675 3432 5.230942 GGTTATATCTCAATGACCTGACGG 58.769 45.833 0.00 0.00 0.00 4.79
2676 3433 4.917998 CGGTTATATCTCAATGACCTGACG 59.082 45.833 0.00 0.00 0.00 4.35
2677 3434 4.686554 GCGGTTATATCTCAATGACCTGAC 59.313 45.833 0.00 0.00 0.00 3.51
2678 3435 4.343814 TGCGGTTATATCTCAATGACCTGA 59.656 41.667 0.00 0.00 0.00 3.86
2679 3436 4.631131 TGCGGTTATATCTCAATGACCTG 58.369 43.478 0.00 0.00 0.00 4.00
2680 3437 4.955811 TGCGGTTATATCTCAATGACCT 57.044 40.909 0.00 0.00 0.00 3.85
2681 3438 6.371809 TTTTGCGGTTATATCTCAATGACC 57.628 37.500 0.00 0.00 0.00 4.02
2709 3466 9.219603 TGACGAGTTTATCTCAATGATCTTTTT 57.780 29.630 0.00 0.00 42.88 1.94
2710 3467 8.777865 TGACGAGTTTATCTCAATGATCTTTT 57.222 30.769 0.00 0.00 42.88 2.27
2711 3468 8.954950 ATGACGAGTTTATCTCAATGATCTTT 57.045 30.769 0.00 0.00 42.88 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.