>input_sequence_70161
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-------------------------------------------------------ATGGAAGAGGAGAAGGCCTTTCCCA
TTGACTCGTCAGGTTTCGAGTTCTTCATCATCATGCTCTCCAAGTCCTTGAAGAAACTGGTACG----------------
--------------------------TACGTTTCTGGGTTCTACACCGTGATGCTTGGTCATTGGGCTCTGGGTTTGGTA
CTTTGGTT---------TGGTTGGTTCAACACTTGTTCAATTCCAACTGCTGCTTGACCCACG---CCACGTCGCAGAGG
ATGCCAGACAAGTTCGCCAAGGTGCTCGCCGGACGTGAGCCCCGGGAAGTGAAGCTGCGGGAGGCCGGCAGCGGGCGCCG
CAGCCTGTGGGACGTGAAGGTGGTGCTGGACGCCGACGGCCACATGTACCTAGGGCGCGGCTGGGAGCAGTTCGCCCGCG
CGCACGACCTGCGGCTCGGCTACTTCCTCGTGTTCAGCTTCGACGGCGACGCCGTGCTCACCGTCAAGGTGTTCGACATG
AGCATGTGCCGCAGGCACTACCAGCGCGACGACGA------TGCCA----------------------------------
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---------------------------------GTACGGGTGGCACCAGTTCCTGGTGGACAACCGCCTCACCGTCGGCG
ACACCTGCTTCTTCCGCGCGCTCCGC---GGGAGCGACGGCGAGGACCACGAGCTCAAGGTGCAGGTCCGCAAGCTGGAC
GGCTCCTTCGTGGAGTGATCGGTGCGGGCGATCAAGTGTATCAGCCGTACGGCGTTGGCGTGCTCATCACCGGCATGCAT
GGCACAACGATGAGGAGAATGGAGTTG-TTTACTTTTTCCAGTAG-----------------------------------
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>chr4B_1_TraesCS4B01G249100
GTGACATGAGGACGCTACAGATTCCTGCAACTGAATCAACACT------ATTTTAATTTTAATTTTAATTTTAATCCTAA
TTCCCTTTCTCATCTGTTGCAGATGGATGGATTCGGGGAGTTTGAAGCACGCAGAAGGAAGAAGTTTGACAAGCAGATTG
ATTCAAATGTGATGATGGGCTCCACAGCCCTGGATGAAGGCATTGATTTACGCTAGTTTTGCG----------AGTGAAC
TTATTTTTT-CCTCATTAGTCGGAAGTAATTGTAATCTTTGTATATATCAGTCTCCCCACAATCTGATTCGGTAAAGAAG
TCAATAAATACAAAACATACAAAAATGAGTAGACTGTCTCTTTCATGTGGATCTACAGTCATTGACTATCAGCATATTAT
GTACTCTCCTGTCTAAGCCTACACCATCTTATTTCTATTGGCCGAGCACTTTCGGTGGCAGCAA-GATTTGTCTGCAATC
CTATGATGGTAAAG--AAACATTTGTCTTCCTATCGCTGGCCTTTGAAGTTCTGGTATAGTATTCCCTATATGGGCAATG
AGACAGTAGGCCTGATT-----------------------------------------------------GCACATGAGA
TTGCTGAGTTTATTTTCAGTTTAAAATCTGTTGGTTTCTTATTCGGGTATGTCCCGCCATGTGACTGCCTGTATTGCGGA
TGATTATACAAATACGTTATTTCATTTCCTGTATATGGTGGGGTTGAAAGGTGTTTGGTACCGCCTCTGATGTTTGATTA
TGCCCTT--GTTGCTAGGCCAGTTAATTAGGAGCTCACAATACATAGGCAGCCCACCACTGGAGCTCG---------ACA
CGTAATGGCTGGAGATGTTCCTGAAGTAGCCCCAACAAGCCGTA---TTGCTGCCGTCTTTCTACACACGTGAATAAAGC
AGGAGGAATCTGT-TGTTACATCGCTGCTTTTCCTTCC-CTATATGATTGCTTCACACTATTGAGAGGAGAGGGCAGAGG
CAAGGAGGAGGAGGAAGAAGAAGAAG------CAGAGGGTTTTGCTACGACTACGATGGAAGAGGAGAAGGCCTTTCCCA
TTGACTCGTCAGGTTTCGAGTTCTTCATCATCATGCTCTCCAAGTCCTTGAAGAAACTGGTACG----------------
--------------------------TACGTTTCTGGGTTCTACACCGTGATGCTTGGTCATTGGGCTCTGGGTTTGGTA
CTTTGGTT---------TGGTTGGTTCAACACTTGTTCAATTCCAACTGCTGCTTGACCCACG---CCACGTCGCAGAGG
ATGCCAGACAAGTTCGCCAAGGTGCTCGCCGGACGTGAGCCCCGGGAAGTGAAGCTGCGGGAGGCCGGCAGCGGGCGCCG
CAGCCTGTGGGACGTGAAGGTGGTGCTGGACGCCGACGGCCACATGTACCTAGGGCGCGGCTGGGAGCAGTTCGCCCGCG
CGCACGACCTGCGGCTCGGCTACTTCCTCGTGTTCAGCTTCGACGGCGACGCCGTGCTCACCGTCAAGGTGTTCGACATG
AGCATGTGCCGCAGGCACTACCAGCGCGACGACGA------TGCCA----------------------------------
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---------------------------------GTACGGGTGGCACCAGTTCCTGGTGGACAACCGCCTCACCGTCGGCG
ACACCTGCTTCTTCCGCGCGCTCCGC---GGGAGCGACGGCGAGGACCACGAGCTCAAGGTGCAGGTCCGCAAGCTGGAC
GGCTCCTTCGTGGAGTGATCGGTGCGGGCGATCAAGTGTATCAGCCGTACGGCGTTGGCGTGCTCATCACCGGCATGCAT
GGCACAACGATGAGGAGAATGGAGTTG-TTTACTTTTTCCAGTAGTTGTTTGAAGCTTTCGGTTCGT------ATGTTCT
GAATCCTGGATCAGTGCCTTCTGATGCTAGTAGCAGCAGAGTAACTCTATAGAGAATAAACCGCCTGACTATGTGCCCCC
TCG------TGTGCAAAAATGATGAGATTGTCCGCTTAATTTCTTGTCTGAAATTGTCATCTTTGT---ACAAGTGTAAG
AATTTCAGTTTCACGTTTACACATGCATGGCTTGCTTTGCCTACACAAGGACCTCATGCTCTAAACTGAGGCCATCTTAC
TCTTACGATATGGGTTTACAAGAGATGGACAATAATCTGAATTTCGTCGTGCAACG------AAGAAGAAGAAGAAACCG
GCCTCCTCGCTAGCTCACATCCGCGTTCAAATCAGGAATCAGGATCCACTTTTAGTGAAGTGAACTGACGCAA-------
------ACGG----CGACACGACGGCGCCACTTTCAGTAAAGAGG-----TATGGCTACGGCCAGCTCCTGTAGCT----
CTCTCGGCCCCTCACGCTTGATCTGATGCCTCAACCTGCATGCAATGCGTTGTCGACCCGTCACCGCCCCTCTCGGGCAG
CATGAATCCTTCTCTTTTTCTGTATTGTTATTACAAGCAAATTACTACTGCTCGATCCTTGAATCAGCGGGTGG---ATT
TTTGGTGCTCCCCAGGCTCAAAGGAAATATTCAGATGGCACTGCAGCCGTAAAAACAGCGCTATGACAGGTGTCAGTCAG
GTGAGTTTACCCGCAACAAAAGAAAATAGGTGTCAGTGCTAAGGTGATTTAACCACCGTGTAAAAAATGATCTAACATTG
TAAAATGGAATCCCCACCTCCAAGTAACATTTTTTTCAGCTCACATAGAACATCACTGCAGTGTTTTTCCGTTGTCTGTA
AAAGAGGTGCAAAATACTGCAACATTTTAGACAAACAATGACTCAATGCATGCCACAATTCCTTGTTGGCTCCGTCAGGT
CATTGAGATATAACCGCAAAAAAAAAAAAAGATCATTGAGATAAACTCGTCATAA
>chr4D_1
GTGACATGAGGGCACCACAGATTCCTGCAACTGAATCAACACT------ATTTTAATTTTAA------TTTTAATCCTAA
TTCTCTTTCTCATCTGTTGCAGATGGATGGATTCGGGGAATTTGAAGCACGCAGAAGGAAGAAGTTTGACAAGCAGATTG
ATTCAAATGTGATGATGGGCTCCACAGCCCTGGATGAAGGCATTGATTTACGCTAGTTTTGCGGCAAAATTCGAGTGAAC
TTATTTTTTTCCTCATTAGCCAGAAGTAATTGTAATCTTTGTATATATCAGTCTCCCCACAATCTGATTCGGTAAAGAAA
TCAATAAATACAAAACATAGAAAAATGAGTAGACTGTCTCTTTCATGTGCATCTACAGTCGTTGGCTATCAGCATATTAT
GTACTCTCCAGTCTAAGCCTACACCATCTTATTTCTATTGGCTGAGCACTTTCGGTGGCAGCAA-GATTTGTGTGCAATC
CTATGCCGGTGAAGAAAAACATTTGTCTTCCTATCGATGGCCTTTGAAGTCTGGTCTACTATCTTCCTGAATGGGCAAGG
AGACAGTAGTGCTGATTGCAAATGATCTACTCTCTATCTCTCTTAAGATCCGAGAGACGAAAATAGAGCAGCACATGAGA
TTGCTAAGTTTAGTTTCAGTTTTAAATCTGTTGGTTTGTTATTCGGGTATGTCCCGCCATGCGACTTCCTGTAATGCGGA
TGATTATATGAATAC-----TTCATATCCTATATATGGCGGGGTTGAAAGGTGTTTGGTGCCGCCTCTGATGTTTGATTA
TGCCCTTTTGTTGCTAGGGCAGTTAATTAGGAGCTCACAATATATAGGCAGCCCACCACTGGAGCTCGTGGAGCTCGACA
CGTAAGGGCTGGAGACGTTCCTCAAGTAGCCCAACAAGCAAAAGATTTTGGTGCCGTCTTTC--CACACGTGACTAAAGC
AGGAGGAATCTGTCTGTTATGTCGTTGCTTATGACTCC-------------TTCACATCTGGGAA--GAGAGGGCAGAGG
CAAGGAGGAGGAGGACGAAGAAGAAG------AAGAGGGTTTTGCTACC------ATGGAAGAGGAGAGGGCCTTTCCCA
GTGACTTGTCAGGTTTCGAGTTCTTCATGATCATGCTCTCCAATTCCTTGAAGAAACTGGTACGGATTTACATACACACC
CTAGTCGCACAATTATTAGATTTATTTACGTTTTGGGGTTCTACACCGTGATGTTTGGTCACTGAACCCCG---------
----GGTT---------TGGTTGGTTCAACACTTCGAC---TTCCACCGCTGCTTAAGGTGCTCATCCACGTCGCAGAGG
ATGCCGGACAAGTTCGCCAAGGTGCTCGCCGGACGTGAGCCCCGGGAAGTGAAGCTGCGGGAGGCCGGCAGCGGGCGCCA
CAGCCTGTGTGACGTGAAGGTGGTGCTGGACGCCGACGGCCACATGTACCTAGGGCGCGGCTGGGAGCAGTTCGCCCGCG
CGCACGACCTGCGGCTCGGCTACATCCTCCTGTTCAGCTTCGACGGCGACGCCGTGCTCACCGTCAAGGTGTTCGACGTG
AGCATGTGCCGCAGGCACTACCAGCGCGACGACGA------TGCCAGTACGCGCGTCTTCTTGCTCTCCTCCGTCCCCCG
TCTCGCTTCGCAACGATTGGTAAGCAAAAATTGAAGAGAACTCTGTTGCATCTGGCCAGGCAGCGGGAGCAGCAATGAC-
-----GGCAGCGGCTCGGCGGAGACGGAGGTCGACGAGGCTCCGACGTCGCAGTTCACGGTCAGGCTGAGCGGCTGCCAC
TTCCTGGAGAAGCAGCAGCAGTATCTGGTGAGAGCTAGCATTCGGGCTGGATCATTACCCGTCACGCATCCTTAATTATG
TGCTAGTACTTCCTCTCCCTCCGTTCCAAATTACTCGTCATGGTTTTACTTCAAATTTAAACTAAAACCACGACGAATAA
TTTGAAACGAAGGGAGTAGCAACTAATTTCGGGCC----GGATCATTTGGGTGCAGAACGTGCCGCTGGAGTTCCATGAG
GCGCACGGGTACGCGGAGAGGAGCAAGGTGGTGCTGCGGATGAGCGGCAAGTCGTGGCCGGTGACCCTGAAGCACACCAA
CCGGGCGGGCGGCAAGACCCGGTCGTCCTTCAGGTACGGGTGGCACCAGTTCCTGGTGGACAACCGCCTCACCGTCGGCG
ACACCTGCTTCTTCCGCGCGCTCCGC---GG------CGGCGAGGACCACGAGCTCAAGGTGCAGGTCCGCAAGCTGGAC
GGCTCCTTCGTGGACTGATCGGTGCTGGCGATCAACTGTATCAGCCGTACGT-GTCGGCGTGCTCATCACCGGCATGGCA
C-----------------------------TACTTTTTCCAGTAGTTGTTTGAAGCTTTCGGTTCGT------ATGTTCT
GAATCCTGGATCAGTGCCTTCTGATGCTAGTAGCAGCAGAGTAAC----TAGAGAATAAGCCGCCTGACTCTGTGCCCCC
TCG------TGTGCAAAAATGACGAGATTGTTCGCCTAATTTCTTGCCTGAAATTGTCATCTTTGTGCTACAAGGATAAG
AATTTCAGTTTCACGTTTGCACATGCATGGCTTGCTTTGCCTACACAAGGACCTCATGCTCTAAACTGAGGCCATCTTAC
TCTTACGATATGGGTTTACAAGAGATGGAGAATAATCTGAATTTCGTCGTGCAACG------AAGAAGAAGAAGAAACCG
GCCTCCTCGCTAGCTCACATCCGCATTCAAATCAGGAATCAGGATCCACTTCCTGTGAAGTGAACTGACGCAAACATGAG
ATGAGGACGG----CGACACGACGGCGCCACTTTCAGTAAAGAGAAGAGATATGGCTACGGCCAGCTCCTAC--CT----
CGCTCGGTCCCTCACGCTTGATCTGATGCATCAACCTGCATGCAATGCGTTGTCGACCCGCCACGGACCCTCACGGGCTG
CATGAATCCTTCTCCTTTTCTGTTTTGTTATTACTACCAAATTACCACTGCTTGATACTTGAATCAGCGGGAGGATTATT
TTTGGTGCTCCCCAGGCTCAAAGGAAATATTCAGATGGCACTGCAGCCGTAAAAACAGCACTATGACATGTGTCAGTCAG
GCGAGTTTACCCCGCAACAAGAAAGACAGGTGTCAGTACTAAGGTGATTTTACCACCGTGTAAAAAATAAATCTA-----
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>chr4A_1
GTGACATGAGGGCACGACAGATTCCTGCAACTGAATCAACACTATTTTAATTTTAATTTTAA------TTTTAATCCTAA
TTCCCTTTCTCGTCTGTTGCAGATGGATGGATTCGGGGAATTTGAAGCGCGCAGAAGGAAGAAGTTTGACAAGCAGATTG
ATTCAAATGTGATGATGGGCTCCACAGCCCTGGACGAAGGCATTGATTTACGCTAGTTTTGCGGCAAAATTCAAGTGAAC
TTGTTTTTT-CTTCATTAGTTGGAAGTAACTGTAAACTTTGTATATATCAGTCTCCCCACAATCTGATTCGGTAAAGAAA
TCAATAAATACAAAACATACAAAAATGAGTAGACTGTCTCTTTCATGTGAATCTACAGTCGTTGACTATCAGCATATTAT
GTACTCTCATGTCTAAGCCTACACCATCTTATTATGCT---------ACTTTCGGTGGCAGCAAAGATTTGTCTGCTTGA
AAATGAGCAGAGAGGGCTTTGCAAAGCTCCCCTCTCAAGTCTCAAGTAGCAGTTACAAGTGAGAAGCCAAGAATTAAACT
ATCGTCCAGCAGTCGT----------------------------------------------------------------
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---------------------GTTAATTTGGAGCTCACAATACATAGGCAGCCCACCACC---------GGAGCTCGACA
CGTAAGGGCAAAAGAC--------------------------------TGGTGCCGTCTTTCTAAACACGTGAATAAAGC
AGGAGGAATCTGT-TGTTACATCGTTGCTTTTTCCCTAGCTATATGATCGATTCACATCTGATAA--GAGAGGGCAGAGG
CAAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGCAGAGGGTTTTGCTACGACTACGATGGAAGAGGAGAAGGCCTTTCCCA
GTGACTCGTCAGGTTTCGAGTTCTTCATCATCATGCTCTCAAATTCCTTGAAGAAACTGGTACGTAT-------------
---------------------------------CTGGGTTCTACACCGTGATCCTTGGTCATTGGTCTCTG---------
----GGTTGGGTTTGGTTGGTTGGTTCACCACTTGTTCAATTTCAACCGCTGCTTGACCCACGT-----CGTCGCAGAGG
ATGCCAGACAAGTTCGCCAAGGTGCTCGCCGGCCGCGAGCCCCGGGAAGTGAAGCTGCGGGAGGCCGGCAGCGGGCGCCG
CAGCCTGTGGGACGTGAAGGTGGTGCTGGACGCCGACGGCCACACATACCTAGGGCGCGGCTGGGAGCGGTTCGCCCGCG
CGCACGACCTGCGGCTCGGCTACTTCCTCGTCTTCAGCTACGACGGCGACGCCGTGCTCACCGTGAAGGTGTTCGACGTG
AGCATGTGCCGCAGGCACTACAAGCACCACGACGACGATGATGCCAGTGCGCGCCTCTTCTTGCTTTCTTTCTCTTCGTT
TCAGTACGGTGGTTGTAACAGGGATGGTTTTC---------------GCATTTGGCCAGGCAGTGGGAGCAGCAGCGACA
GTGGCGGCAGCAGCTCGGCGGAGGTGGAGGTCGACGACGCTCCGACGTCGCAGTTCACGGTCAGGCTGAGCGGCTGCCAC
TTCCTCGAGAAGCAGCAGCAGTATCTGGTGAGAGCTAGCAT-----------------------------CTTTCTTATG
TGCTAGC-------------------------------------------------------------------------
-----------------AGCAACTAATTTCGGGGTGCGTGGATCATTTGGGTGCAGAACGTGCCGCTGGAGTTCCATGAG
GCGCACGGGTACGCGGAGAGGAGCAAGGTGGTGCTGCGGATGAGCGGCAAGTCGTGGGGCGTGACCCTGAAGCACACCAA
CCGGGCGGGCGGCAAGACCCGGTCGTCCTTCAGGTACGGGTGGCACCAGTTCCTGGTGGACAACCGCCTCACCGTCGGCG
ACACCTGCTTCTTCCGCGCGCTCCGCGCTGG------CGGCGAGGACCACGAGCTCAAGGTGCAGGTCCGCAAGCTGGAC
GGCACCTTCGTGGAATGATC----------------------AGCCGGCCGT-GTTGGCGTGCTCATCACCGGCATGCAT
GGCACAATGATCAGGACAATGGAGTTCTTTTACTTTTTCTAGTAGTTGTTTGAAGCTTTCGGATCGTCTTGGTATGTTCT
GAAACCTGGATCAGTGCCTTCTGATGCTAGTAGCAGCAGAGTAACTAGTTAGAGAATAAACCGCCTGACTCTGTGCCTCC
TCGATCGTGTGTGCAAAGAGGATGAGATTGTTC-----------------------TCATCTTTGTGCTACAAGGATAAG
ATTTTCAGTTTCACGTTTACACATGCATGGCTTGCTTTGCCTACACAACGACTTCATGCTCTAAACTGAGGCCATCTTAC
TG--ACGATATGGGTTTACAAGAGATGGAGAAGAATCTGAACTTCGTCGTGCAACGAAGAAAAAGAAGAAGAAGAAACCG
GCCTCCTCGCTAGCTCACATCCGCATTCAAATCAGGAATCAGGATCCACTTTCGGTGAAGTGAACTGACGCAAACATGAG
ATGAGGACGGACGGCGACACGACGGCGCCAGTTTGAGTA-----AAGAGATATGGCTACGGCCAGCTCCTAC--CTACCT
CTCTCGGTCCCTCACGCTTGATCTGATGCCTCAACC--------------------------------------------
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>SNPs
-----------S-S-S----------------------------------------------SSSSSS------------
---------------------------------------S----------------------------------------
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-------------------------------------------------------------------------------S
-------------------------------------------------S----------S-------------------
------------------------------------------S-------------------------------------
------S-----------------------------S-------------SS--SS-SSSS-S-S----S--------S-
---------SS---------------------------------------------------------------------
-----S------S---------S--------------S-----------------------S----S------S------
--------SS-----SSSSS-----S----S-------S--------------------S--------------------
------------------S-------------------------------------------------------------
-----S---------S------S---------S-SS-SSSSSSS------S-----------------------------
------------------------S-------S-S-------------S-S------SSSSS--SSS-------------
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S------------------------------------------S------------------------------------
-----------------------------------------------------------------S-----SSSSSSSSS
SSSS--------------------------------------S----S--------------------------------
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-------------------------------SSSSSS-------------------------------------------
--------------S----------S---------S---------------SS---------------------------
-------S---S----S---------S-----------------------------------------------------
----------------------------------------------SSS---------------------S---------
-------------------------------S---S----------S---------------------------SS----
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-----------------------------S--------------------------------------------------
------------------------S---------------------------SS--------------------------
--------------------------------------------S-------------------------SSSS------
-------S----------------------------------------------------S---S-S-----S-----S-
--------------S--------S----------S-S--------S------S---S--------------S--------
-----------------------------------------------------------S--------S-----------
-S----------SSS-SS--SS--S-S----------S------------S-----------------S-SSSS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_707
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-----------------------------------------------TATGTCCCGCCATGTGACTG-------------
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>reverse_3097
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--------------------------------------------------------CCTTGAATCAGCGGGTGGAT----
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