Multiple sequence alignment - TraesCS4B01G232200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G232200 chr4B 100.000 3560 0 0 1 3560 483766413 483762854 0.000000e+00 6575.0
1 TraesCS4B01G232200 chr4B 87.889 289 33 2 3272 3559 483754918 483754631 4.400000e-89 339.0
2 TraesCS4B01G232200 chr4B 89.610 77 6 2 387 461 517170767 517170843 2.930000e-16 97.1
3 TraesCS4B01G232200 chr4B 82.203 118 10 5 418 527 337742359 337742473 1.360000e-14 91.6
4 TraesCS4B01G232200 chr4D 95.255 3035 123 9 533 3560 394147077 394144057 0.000000e+00 4787.0
5 TraesCS4B01G232200 chr4D 91.273 275 14 7 1 265 394148061 394147787 2.020000e-97 366.0
6 TraesCS4B01G232200 chr4D 86.505 289 37 2 3272 3559 394139129 394138842 2.060000e-82 316.0
7 TraesCS4B01G232200 chr4D 90.833 120 11 0 247 366 394147749 394147630 1.020000e-35 161.0
8 TraesCS4B01G232200 chr4A 95.119 2151 98 2 533 2683 75429274 75427131 0.000000e+00 3384.0
9 TraesCS4B01G232200 chr4A 94.772 899 34 5 2663 3560 75427027 75426141 0.000000e+00 1387.0
10 TraesCS4B01G232200 chr4A 87.500 288 36 0 3272 3559 75422184 75421897 2.050000e-87 333.0
11 TraesCS4B01G232200 chr4A 91.892 222 16 1 147 366 75429799 75429578 3.450000e-80 309.0
12 TraesCS4B01G232200 chr4A 80.153 131 13 6 393 511 522959147 522959018 6.330000e-13 86.1
13 TraesCS4B01G232200 chr1B 82.877 146 11 7 393 528 26268793 26268934 6.240000e-23 119.0
14 TraesCS4B01G232200 chr1D 80.952 147 12 8 393 527 397047719 397047577 6.290000e-18 102.0
15 TraesCS4B01G232200 chr1D 89.231 65 3 2 464 527 494305024 494305085 1.060000e-10 78.7
16 TraesCS4B01G232200 chr6B 79.730 148 23 5 370 511 66778677 66778823 2.260000e-17 100.0
17 TraesCS4B01G232200 chr3A 86.667 90 8 4 389 477 176148176 176148090 2.930000e-16 97.1
18 TraesCS4B01G232200 chr2D 81.538 130 11 6 407 527 246704683 246704558 1.050000e-15 95.3
19 TraesCS4B01G232200 chr3D 89.189 74 6 2 389 461 153507057 153507129 1.360000e-14 91.6
20 TraesCS4B01G232200 chr3B 89.189 74 6 2 389 461 225173231 225173303 1.360000e-14 91.6
21 TraesCS4B01G232200 chrUn 79.720 143 14 9 396 527 88784847 88784709 4.900000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G232200 chr4B 483762854 483766413 3559 True 6575.000000 6575 100.000000 1 3560 1 chr4B.!!$R2 3559
1 TraesCS4B01G232200 chr4D 394144057 394148061 4004 True 1771.333333 4787 92.453667 1 3560 3 chr4D.!!$R2 3559
2 TraesCS4B01G232200 chr4A 75421897 75429799 7902 True 1353.250000 3384 92.320750 147 3560 4 chr4A.!!$R2 3413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 658 0.802494 CGGTGGTGTTACTTCATGCC 59.198 55.0 0.00 0.00 0.0 4.40 F
1557 2085 0.390860 ACTCGTGCTTTGCAGAGAGT 59.609 50.0 18.27 18.27 45.7 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 2259 0.107993 ACGTGACATGATCAGGCCTG 60.108 55.000 27.87 27.87 45.39 4.85 R
2655 3183 1.066645 TCATGTGACACCAGCTGCTAG 60.067 52.381 8.66 0.00 0.00 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 6.597562 TCCTGTTGTATAGGTTGTTCTTGTT 58.402 36.000 0.00 0.00 36.67 2.83
93 94 7.057894 TCCTGTTGTATAGGTTGTTCTTGTTT 58.942 34.615 0.00 0.00 36.67 2.83
94 95 7.558444 TCCTGTTGTATAGGTTGTTCTTGTTTT 59.442 33.333 0.00 0.00 36.67 2.43
283 350 6.671614 TTTTACTGGTTTCATAGGCATACG 57.328 37.500 0.00 0.00 0.00 3.06
302 369 8.015658 GGCATACGATAAGTGAAAAATCATACC 58.984 37.037 0.00 0.00 0.00 2.73
341 408 5.912892 ACCAAAAACCGTTGAAAATCAGAT 58.087 33.333 0.00 0.00 0.00 2.90
344 411 6.257630 CCAAAAACCGTTGAAAATCAGATGTT 59.742 34.615 0.00 0.00 0.00 2.71
346 413 5.514274 AACCGTTGAAAATCAGATGTTGT 57.486 34.783 0.00 0.00 0.00 3.32
362 429 8.681806 TCAGATGTTGTACATTTTCAAACTGAA 58.318 29.630 0.00 0.00 39.27 3.02
366 433 7.254852 TGTTGTACATTTTCAAACTGAAGGAC 58.745 34.615 0.00 0.00 37.70 3.85
367 434 6.385649 TGTACATTTTCAAACTGAAGGACC 57.614 37.500 0.00 0.00 37.70 4.46
368 435 4.937201 ACATTTTCAAACTGAAGGACCC 57.063 40.909 0.00 0.00 37.70 4.46
401 518 8.911918 TTGCCTTATGTTTGAGAAGTTTAGTA 57.088 30.769 0.00 0.00 0.00 1.82
402 519 8.319143 TGCCTTATGTTTGAGAAGTTTAGTAC 57.681 34.615 0.00 0.00 0.00 2.73
411 528 4.771054 TGAGAAGTTTAGTACCCTGAGGAC 59.229 45.833 0.00 0.00 36.73 3.85
413 530 2.454538 AGTTTAGTACCCTGAGGACGG 58.545 52.381 0.00 0.00 36.73 4.79
444 561 3.540314 TGTGAAGCATGGCAACTTTTT 57.460 38.095 7.47 0.00 37.61 1.94
450 567 3.871485 AGCATGGCAACTTTTTGTTTGA 58.129 36.364 0.00 0.00 36.63 2.69
452 569 4.883006 AGCATGGCAACTTTTTGTTTGAAT 59.117 33.333 0.00 0.00 36.63 2.57
453 570 4.971220 GCATGGCAACTTTTTGTTTGAATG 59.029 37.500 0.00 0.00 36.63 2.67
454 571 5.220815 GCATGGCAACTTTTTGTTTGAATGA 60.221 36.000 0.00 0.00 36.63 2.57
455 572 5.793026 TGGCAACTTTTTGTTTGAATGAC 57.207 34.783 0.00 0.00 36.63 3.06
456 573 5.240891 TGGCAACTTTTTGTTTGAATGACA 58.759 33.333 0.00 0.00 36.63 3.58
457 574 5.702670 TGGCAACTTTTTGTTTGAATGACAA 59.297 32.000 0.00 0.00 36.63 3.18
458 575 6.128336 TGGCAACTTTTTGTTTGAATGACAAG 60.128 34.615 0.00 0.00 36.63 3.16
462 595 7.595311 ACTTTTTGTTTGAATGACAAGTTCC 57.405 32.000 0.00 0.00 39.77 3.62
491 624 8.804688 TTTGTTTCGGATGGTAATTTTAGTTG 57.195 30.769 0.00 0.00 0.00 3.16
503 636 9.719279 TGGTAATTTTAGTTGTAAAAACGTCAG 57.281 29.630 0.00 0.00 40.65 3.51
507 640 7.935804 TTTTAGTTGTAAAAACGTCAGAACG 57.064 32.000 0.00 0.00 42.09 3.95
516 649 3.573569 CGTCAGAACGGTGGTGTTA 57.426 52.632 0.00 0.00 45.21 2.41
517 650 1.134226 CGTCAGAACGGTGGTGTTAC 58.866 55.000 0.00 0.00 45.21 2.50
519 652 2.800629 CGTCAGAACGGTGGTGTTACTT 60.801 50.000 0.00 0.00 45.21 2.24
520 653 2.798847 GTCAGAACGGTGGTGTTACTTC 59.201 50.000 0.00 0.00 30.75 3.01
521 654 2.431419 TCAGAACGGTGGTGTTACTTCA 59.569 45.455 0.00 0.00 30.75 3.02
523 656 3.186409 CAGAACGGTGGTGTTACTTCATG 59.814 47.826 0.00 0.00 30.75 3.07
525 658 0.802494 CGGTGGTGTTACTTCATGCC 59.198 55.000 0.00 0.00 0.00 4.40
529 662 3.367292 GGTGGTGTTACTTCATGCCATTG 60.367 47.826 0.00 0.00 0.00 2.82
531 664 3.505680 TGGTGTTACTTCATGCCATTGTC 59.494 43.478 0.00 0.00 0.00 3.18
587 1115 1.142748 GATCCTCACTGCCGTCCTG 59.857 63.158 0.00 0.00 0.00 3.86
666 1194 1.523711 CCGACGCCATTGCCACTAT 60.524 57.895 0.00 0.00 0.00 2.12
667 1195 1.498865 CCGACGCCATTGCCACTATC 61.499 60.000 0.00 0.00 0.00 2.08
831 1359 4.711949 CAGCCCTCCACGCTGCTT 62.712 66.667 0.00 0.00 46.54 3.91
862 1390 1.075600 CTCCACCTCCTCTCCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
865 1393 1.687493 CACCTCCTCTCCTCCCACC 60.687 68.421 0.00 0.00 0.00 4.61
867 1395 2.443016 CTCCTCTCCTCCCACCCG 60.443 72.222 0.00 0.00 0.00 5.28
889 1417 4.824515 CTCTCCCCGACGCCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
895 1423 4.824515 CCGACGCCCTCTCCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
940 1468 0.976641 CTGCTCCTACAACACCCTCA 59.023 55.000 0.00 0.00 0.00 3.86
1139 1667 1.227438 CCGACAACCAGTTCACCGT 60.227 57.895 0.00 0.00 0.00 4.83
1229 1757 2.835431 CAGGAGAGGGATCGGCGT 60.835 66.667 6.85 0.00 0.00 5.68
1313 1841 2.432628 CAGGAGGGTGTTCGACGC 60.433 66.667 0.00 0.00 37.80 5.19
1371 1899 1.272769 GTGGAGAGGTACTTTGACGCT 59.727 52.381 0.00 0.00 41.55 5.07
1470 1998 2.594592 GGGGTTCTGCGTGCTTGT 60.595 61.111 0.00 0.00 0.00 3.16
1557 2085 0.390860 ACTCGTGCTTTGCAGAGAGT 59.609 50.000 18.27 18.27 45.70 3.24
1624 2152 0.600255 GCGTGTATTCGAGGGGATGG 60.600 60.000 0.00 0.00 0.00 3.51
1650 2178 3.134879 GACCTGGTGTCGTGGACA 58.865 61.111 2.82 0.00 40.50 4.02
1731 2259 5.292101 CGACATGTTCTTAAGGTCAGGAATC 59.708 44.000 15.26 6.38 0.00 2.52
1842 2370 3.434641 CAGAGGATAAGTATGGCATTGCG 59.565 47.826 4.78 0.00 0.00 4.85
1866 2394 2.615447 CACCGCTGATCATTATGCTTGT 59.385 45.455 0.00 0.00 0.00 3.16
1878 2406 5.693555 TCATTATGCTTGTGTGATCGATCTC 59.306 40.000 25.02 21.55 0.00 2.75
1986 2514 2.124151 GGTGGCTGCCGGATTCAT 60.124 61.111 14.98 0.00 0.00 2.57
1995 2523 3.304257 GCTGCCGGATTCATAAGAATGTG 60.304 47.826 5.05 0.00 44.30 3.21
1997 2525 2.618241 GCCGGATTCATAAGAATGTGCA 59.382 45.455 5.05 0.00 44.30 4.57
2391 2919 2.694628 TGCATTTGGGATCATTGCTACC 59.305 45.455 0.00 0.00 35.05 3.18
2394 2922 0.555769 TTGGGATCATTGCTACCCCC 59.444 55.000 0.00 0.00 41.44 5.40
2527 3055 9.265901 ACTCGAATATATTTCATCACTTCAAGG 57.734 33.333 0.00 0.00 0.00 3.61
2530 3058 9.045223 CGAATATATTTCATCACTTCAAGGACA 57.955 33.333 0.00 0.00 0.00 4.02
2587 3115 3.254166 GCTGCATATGTGGATAGGTTTGG 59.746 47.826 4.29 0.00 0.00 3.28
2600 3128 8.540388 GTGGATAGGTTTGGCTTCTGATATATA 58.460 37.037 0.00 0.00 0.00 0.86
2635 3163 5.569355 TCCATCTTTTCATGGCTAAAGTCA 58.431 37.500 12.45 0.00 42.97 3.41
2655 3183 7.436430 AGTCAATGTGCATCATCTATTGATC 57.564 36.000 0.00 0.00 43.40 2.92
2676 3204 0.109153 AGCAGCTGGTGTCACATGAA 59.891 50.000 19.45 0.00 0.00 2.57
2702 3359 1.034292 GCAATCCAGGCTCCAAGACC 61.034 60.000 0.00 0.00 0.00 3.85
2768 3425 3.312697 GCTCCGATACCTTGGACAATTTC 59.687 47.826 0.00 0.00 31.18 2.17
2797 3454 8.946085 TGCTCTGTTCAAAGGTTAAGTTATATG 58.054 33.333 0.00 0.00 0.00 1.78
2809 3466 9.169592 AGGTTAAGTTATATGCGTACATGTTTT 57.830 29.630 2.30 0.00 37.04 2.43
2994 3651 2.294233 CCCATATGCAATGTTTCCCTCG 59.706 50.000 0.00 0.00 0.00 4.63
2996 3653 3.243168 CCATATGCAATGTTTCCCTCGTG 60.243 47.826 0.00 0.00 0.00 4.35
3037 3694 7.334171 CCACAATTATCAGTACATCAGTGAACA 59.666 37.037 0.00 0.00 40.04 3.18
3038 3695 8.720562 CACAATTATCAGTACATCAGTGAACAA 58.279 33.333 0.00 0.00 40.04 2.83
3039 3696 8.721478 ACAATTATCAGTACATCAGTGAACAAC 58.279 33.333 0.00 0.00 40.04 3.32
3040 3697 8.720562 CAATTATCAGTACATCAGTGAACAACA 58.279 33.333 0.00 0.00 40.04 3.33
3041 3698 9.453572 AATTATCAGTACATCAGTGAACAACAT 57.546 29.630 0.00 0.00 40.04 2.71
3042 3699 6.732531 ATCAGTACATCAGTGAACAACATG 57.267 37.500 0.00 0.00 40.04 3.21
3043 3700 5.852827 TCAGTACATCAGTGAACAACATGA 58.147 37.500 0.00 0.00 33.49 3.07
3044 3701 6.287525 TCAGTACATCAGTGAACAACATGAA 58.712 36.000 0.00 0.00 33.49 2.57
3045 3702 6.202762 TCAGTACATCAGTGAACAACATGAAC 59.797 38.462 0.00 0.00 33.49 3.18
3192 3850 0.177604 CTTGCTGAGGAGGGTAGCTG 59.822 60.000 0.00 0.00 38.25 4.24
3200 3858 1.625818 AGGAGGGTAGCTGTCAGTTTG 59.374 52.381 0.00 0.00 0.00 2.93
3238 3897 4.659115 TGCCTCCATGAATATGAATCTGG 58.341 43.478 0.00 0.00 36.36 3.86
3411 4070 0.037877 CTGGGATCCATCCTGCATCC 59.962 60.000 15.23 0.00 46.35 3.51
3534 4193 3.731728 GCATCTGGGGCCTGACCA 61.732 66.667 0.84 0.00 42.05 4.02
3546 4205 2.501723 GGCCTGACCATAGAAGAACTCA 59.498 50.000 0.00 0.00 38.86 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.361201 GCATTAAGCTAGAACACTGATGAAACA 60.361 37.037 0.00 0.00 41.15 2.83
41 42 8.204903 AGAGCAGGATTATCTATCTGATGTTT 57.795 34.615 0.00 0.00 36.65 2.83
98 99 9.545105 AAATGCAACATTTATCTCTGTTTGAAA 57.455 25.926 3.80 0.00 33.45 2.69
101 102 8.523523 TCAAATGCAACATTTATCTCTGTTTG 57.476 30.769 5.30 0.00 33.45 2.93
180 188 5.340803 CATCATTCCAGCAGAACAAATGAG 58.659 41.667 0.00 0.00 39.09 2.90
185 193 2.516906 TGCATCATTCCAGCAGAACAA 58.483 42.857 0.00 0.00 37.29 2.83
302 369 7.312899 GGTTTTTGGTACAGATTTGGATAGTG 58.687 38.462 0.00 0.00 42.39 2.74
308 375 4.577834 ACGGTTTTTGGTACAGATTTGG 57.422 40.909 0.00 0.00 42.39 3.28
341 408 7.254852 GTCCTTCAGTTTGAAAATGTACAACA 58.745 34.615 0.00 0.00 35.73 3.33
344 411 5.300792 GGGTCCTTCAGTTTGAAAATGTACA 59.699 40.000 5.23 0.00 35.73 2.90
346 413 5.450453 TGGGTCCTTCAGTTTGAAAATGTA 58.550 37.500 5.23 0.00 35.73 2.29
383 500 7.074653 TCAGGGTACTAAACTTCTCAAACAT 57.925 36.000 0.00 0.00 0.00 2.71
385 502 5.932883 CCTCAGGGTACTAAACTTCTCAAAC 59.067 44.000 0.00 0.00 0.00 2.93
387 504 5.245526 GTCCTCAGGGTACTAAACTTCTCAA 59.754 44.000 0.00 0.00 0.00 3.02
391 508 3.119209 CCGTCCTCAGGGTACTAAACTTC 60.119 52.174 0.00 0.00 0.00 3.01
401 518 1.705997 AAAGTTGCCGTCCTCAGGGT 61.706 55.000 0.00 0.00 0.00 4.34
402 519 0.323629 TAAAGTTGCCGTCCTCAGGG 59.676 55.000 0.00 0.00 0.00 4.45
503 636 2.095919 GCATGAAGTAACACCACCGTTC 60.096 50.000 0.00 0.00 0.00 3.95
505 638 1.519408 GCATGAAGTAACACCACCGT 58.481 50.000 0.00 0.00 0.00 4.83
506 639 0.802494 GGCATGAAGTAACACCACCG 59.198 55.000 0.00 0.00 0.00 4.94
507 640 1.904287 TGGCATGAAGTAACACCACC 58.096 50.000 0.00 0.00 0.00 4.61
509 642 3.495331 ACAATGGCATGAAGTAACACCA 58.505 40.909 0.00 0.00 0.00 4.17
510 643 3.505680 TGACAATGGCATGAAGTAACACC 59.494 43.478 0.00 0.00 0.00 4.16
511 644 4.764679 TGACAATGGCATGAAGTAACAC 57.235 40.909 0.00 0.00 0.00 3.32
512 645 5.981088 AATGACAATGGCATGAAGTAACA 57.019 34.783 0.67 0.00 0.00 2.41
516 649 5.471556 TTCAAATGACAATGGCATGAAGT 57.528 34.783 0.67 0.00 0.00 3.01
517 650 5.697178 TGTTTCAAATGACAATGGCATGAAG 59.303 36.000 0.67 0.00 0.00 3.02
519 652 5.211174 TGTTTCAAATGACAATGGCATGA 57.789 34.783 0.67 0.00 0.00 3.07
520 653 5.467399 ACTTGTTTCAAATGACAATGGCATG 59.533 36.000 0.67 0.00 35.44 4.06
521 654 5.613329 ACTTGTTTCAAATGACAATGGCAT 58.387 33.333 0.00 0.00 35.44 4.40
523 656 5.989551 AACTTGTTTCAAATGACAATGGC 57.010 34.783 0.00 0.00 35.44 4.40
525 658 7.904461 GTCCAAAACTTGTTTCAAATGACAATG 59.096 33.333 0.00 0.00 35.44 2.82
529 662 6.589907 ACTGTCCAAAACTTGTTTCAAATGAC 59.410 34.615 0.00 3.87 0.00 3.06
531 664 6.966435 ACTGTCCAAAACTTGTTTCAAATG 57.034 33.333 0.00 0.00 0.00 2.32
666 1194 0.548031 GCTTGGTCCTCATGGATGGA 59.452 55.000 0.00 0.00 45.29 3.41
667 1195 0.466922 GGCTTGGTCCTCATGGATGG 60.467 60.000 0.00 0.00 45.29 3.51
815 1343 3.909086 GAAAGCAGCGTGGAGGGCT 62.909 63.158 0.00 0.00 42.61 5.19
831 1359 2.528127 TGGAGGAGGCGGTTGGAA 60.528 61.111 0.00 0.00 0.00 3.53
873 1401 4.816984 GAGAGGGCGTCGGGGAGA 62.817 72.222 0.96 0.00 0.00 3.71
889 1417 0.266152 GGGATGGAGGAGAAGAGGGA 59.734 60.000 0.00 0.00 0.00 4.20
895 1423 1.762460 GGCTCGGGATGGAGGAGAA 60.762 63.158 0.00 0.00 34.56 2.87
1624 2152 1.518903 GACACCAGGTCTGCCTTTGC 61.519 60.000 0.00 0.00 44.18 3.68
1650 2178 1.067000 GCATAGCCAGAGATCATCGCT 60.067 52.381 0.00 0.00 0.00 4.93
1698 2226 1.630148 AGAACATGTCGAAGTAGCGC 58.370 50.000 0.00 0.00 0.00 5.92
1731 2259 0.107993 ACGTGACATGATCAGGCCTG 60.108 55.000 27.87 27.87 45.39 4.85
1820 2348 3.434641 CGCAATGCCATACTTATCCTCTG 59.565 47.826 0.00 0.00 0.00 3.35
1842 2370 1.334419 GCATAATGATCAGCGGTGTGC 60.334 52.381 15.22 11.22 46.98 4.57
1866 2394 1.035923 GGCTGAGGAGATCGATCACA 58.964 55.000 26.47 17.84 0.00 3.58
1986 2514 4.442706 GCCTAGCTAAGTGCACATTCTTA 58.557 43.478 21.04 7.83 45.94 2.10
1995 2523 2.589159 GCCCGCCTAGCTAAGTGC 60.589 66.667 0.00 0.00 43.29 4.40
1997 2525 3.095347 GCTGCCCGCCTAGCTAAGT 62.095 63.158 0.00 0.00 36.99 2.24
2137 2665 1.134946 GGCTGGCATTTTCGTTATGCT 59.865 47.619 15.04 0.00 45.91 3.79
2154 2682 3.515602 ACTTCAATCCAACTTGAGGCT 57.484 42.857 0.00 0.00 36.10 4.58
2406 2934 5.970023 CCGCAGATTCTTGAAAATCTTGATC 59.030 40.000 0.00 0.00 42.05 2.92
2469 2997 4.279982 TGATCTCTCTCTGAGCAATCTGT 58.720 43.478 0.00 0.00 42.38 3.41
2527 3055 2.291741 CTCTGCAAGAACAAACCCTGTC 59.708 50.000 0.00 0.00 46.34 3.51
2530 3058 2.173569 AGTCTCTGCAAGAACAAACCCT 59.826 45.455 0.00 0.00 46.34 4.34
2600 3128 7.232127 CCATGAAAAGATGGATAATAGTTGCCT 59.768 37.037 0.00 0.00 45.24 4.75
2617 3145 5.346822 GCACATTGACTTTAGCCATGAAAAG 59.653 40.000 0.00 4.04 38.41 2.27
2655 3183 1.066645 TCATGTGACACCAGCTGCTAG 60.067 52.381 8.66 0.00 0.00 3.42
2676 3204 2.025037 TGGAGCCTGGATTGCAATAACT 60.025 45.455 12.97 5.44 0.00 2.24
2702 3359 5.489792 TCCTAATAGCAGCTTGATAAGGG 57.510 43.478 0.00 0.00 0.00 3.95
2768 3425 5.059833 ACTTAACCTTTGAACAGAGCAGAG 58.940 41.667 0.00 0.00 0.00 3.35
2797 3454 4.041723 ACAAGAAAGCAAAACATGTACGC 58.958 39.130 0.00 1.99 0.00 4.42
2944 3601 5.831702 AGAGCATCCACAATTCTGAAATC 57.168 39.130 0.00 0.00 33.66 2.17
2996 3653 2.125147 TGGGTAGCATGCTCGTGC 60.125 61.111 26.57 12.82 45.38 5.34
3037 3694 3.988379 AAGCATCACGTTGTTCATGTT 57.012 38.095 0.00 0.00 0.00 2.71
3038 3695 3.314913 TCAAAGCATCACGTTGTTCATGT 59.685 39.130 0.00 0.00 38.68 3.21
3039 3696 3.887741 TCAAAGCATCACGTTGTTCATG 58.112 40.909 0.00 0.00 38.68 3.07
3040 3697 4.566545 TTCAAAGCATCACGTTGTTCAT 57.433 36.364 0.00 0.00 38.68 2.57
3041 3698 4.101942 GTTTCAAAGCATCACGTTGTTCA 58.898 39.130 0.00 0.00 38.68 3.18
3042 3699 4.101942 TGTTTCAAAGCATCACGTTGTTC 58.898 39.130 0.00 0.00 38.68 3.18
3043 3700 4.103365 TGTTTCAAAGCATCACGTTGTT 57.897 36.364 0.00 0.00 38.68 2.83
3044 3701 3.489059 CCTGTTTCAAAGCATCACGTTGT 60.489 43.478 0.00 0.00 38.68 3.32
3045 3702 3.044986 CCTGTTTCAAAGCATCACGTTG 58.955 45.455 0.00 0.00 38.90 4.10
3192 3850 6.683974 ATGCATTGTATAGACCAAACTGAC 57.316 37.500 0.00 0.00 0.00 3.51
3200 3858 3.503748 GGAGGCAATGCATTGTATAGACC 59.496 47.826 33.67 25.72 39.88 3.85
3411 4070 4.469945 TCATACCTTACAACTCAAGGAGGG 59.530 45.833 8.08 0.00 44.59 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.