Multiple sequence alignment - TraesCS4B01G226300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G226300 chr4B 100.000 2495 0 0 1 2495 472671064 472673558 0.000000e+00 4608.0
1 TraesCS4B01G226300 chr4B 80.498 1005 106 30 600 1530 472640368 472641356 0.000000e+00 688.0
2 TraesCS4B01G226300 chr4A 88.265 2207 156 47 358 2493 67297051 67299225 0.000000e+00 2545.0
3 TraesCS4B01G226300 chr4D 92.558 739 23 7 783 1500 386121665 386122392 0.000000e+00 1031.0
4 TraesCS4B01G226300 chr4D 92.561 578 33 6 1542 2113 386122390 386122963 0.000000e+00 821.0
5 TraesCS4B01G226300 chr4D 91.195 159 13 1 19 177 386116622 386116779 5.400000e-52 215.0
6 TraesCS4B01G226300 chr4D 99.160 119 1 0 621 739 386121295 386121413 5.400000e-52 215.0
7 TraesCS4B01G226300 chr2B 78.367 245 39 8 2252 2493 199461882 199461649 2.000000e-31 147.0
8 TraesCS4B01G226300 chr7A 85.437 103 15 0 19 121 675418903 675418801 9.440000e-20 108.0
9 TraesCS4B01G226300 chr5D 75.349 215 33 15 2249 2463 486744387 486744581 4.420000e-13 86.1
10 TraesCS4B01G226300 chr3B 91.071 56 4 1 2408 2463 370733616 370733562 9.570000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G226300 chr4B 472671064 472673558 2494 False 4608 4608 100.000000 1 2495 1 chr4B.!!$F2 2494
1 TraesCS4B01G226300 chr4B 472640368 472641356 988 False 688 688 80.498000 600 1530 1 chr4B.!!$F1 930
2 TraesCS4B01G226300 chr4A 67297051 67299225 2174 False 2545 2545 88.265000 358 2493 1 chr4A.!!$F1 2135
3 TraesCS4B01G226300 chr4D 386121295 386122963 1668 False 689 1031 94.759667 621 2113 3 chr4D.!!$F2 1492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 343 0.031585 GTTTGCTTCCGTTTGGGGTC 59.968 55.0 0.0 0.0 36.01 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2351 0.034059 ACGACTTGGAGTCTTGCCAG 59.966 55.0 6.53 0.0 42.92 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.368003 TCCCTAGGGTGCGGTTAG 57.632 61.111 27.58 0.00 36.47 2.34
51 52 4.021925 GGTGCTCGTGCTCCCCTT 62.022 66.667 17.49 0.00 44.54 3.95
52 53 2.435059 GTGCTCGTGCTCCCCTTC 60.435 66.667 11.19 0.00 40.48 3.46
53 54 4.069232 TGCTCGTGCTCCCCTTCG 62.069 66.667 11.19 0.00 40.48 3.79
54 55 3.760035 GCTCGTGCTCCCCTTCGA 61.760 66.667 1.41 0.00 36.03 3.71
55 56 2.182030 CTCGTGCTCCCCTTCGAC 59.818 66.667 0.00 0.00 0.00 4.20
56 57 2.282958 TCGTGCTCCCCTTCGACT 60.283 61.111 0.00 0.00 0.00 4.18
57 58 2.125912 CGTGCTCCCCTTCGACTG 60.126 66.667 0.00 0.00 0.00 3.51
58 59 2.266055 GTGCTCCCCTTCGACTGG 59.734 66.667 0.00 0.00 0.00 4.00
59 60 3.706373 TGCTCCCCTTCGACTGGC 61.706 66.667 0.00 0.00 0.00 4.85
60 61 4.475135 GCTCCCCTTCGACTGGCC 62.475 72.222 0.00 0.00 0.00 5.36
61 62 3.787001 CTCCCCTTCGACTGGCCC 61.787 72.222 0.00 0.00 0.00 5.80
77 78 3.410516 CCGCGTGCACGATCACAA 61.411 61.111 41.19 0.00 43.02 3.33
78 79 2.202046 CGCGTGCACGATCACAAC 60.202 61.111 41.19 20.75 43.02 3.32
79 80 2.202046 GCGTGCACGATCACAACG 60.202 61.111 41.19 13.45 43.02 4.10
80 81 2.653967 GCGTGCACGATCACAACGA 61.654 57.895 41.19 0.00 43.02 3.85
81 82 1.412226 CGTGCACGATCACAACGAG 59.588 57.895 34.93 0.00 43.02 4.18
82 83 1.130613 GTGCACGATCACAACGAGC 59.869 57.895 0.00 0.00 44.57 5.03
83 84 1.006220 TGCACGATCACAACGAGCT 60.006 52.632 0.00 0.00 44.59 4.09
84 85 1.008875 TGCACGATCACAACGAGCTC 61.009 55.000 2.73 2.73 44.59 4.09
85 86 1.983907 CACGATCACAACGAGCTCG 59.016 57.895 33.45 33.45 46.33 5.03
86 87 1.154016 ACGATCACAACGAGCTCGG 60.154 57.895 36.93 23.70 44.95 4.63
87 88 2.508891 CGATCACAACGAGCTCGGC 61.509 63.158 36.93 16.70 44.95 5.54
88 89 1.446099 GATCACAACGAGCTCGGCA 60.446 57.895 36.93 17.48 44.95 5.69
89 90 1.416813 GATCACAACGAGCTCGGCAG 61.417 60.000 36.93 27.11 44.95 4.85
90 91 2.842394 ATCACAACGAGCTCGGCAGG 62.842 60.000 36.93 24.58 44.95 4.85
91 92 3.616721 ACAACGAGCTCGGCAGGT 61.617 61.111 36.93 25.18 44.95 4.00
92 93 2.811317 CAACGAGCTCGGCAGGTC 60.811 66.667 36.93 0.00 44.95 3.85
96 97 4.500116 GAGCTCGGCAGGTCGACC 62.500 72.222 27.67 27.67 37.41 4.79
102 103 3.827898 GGCAGGTCGACCCGAGAG 61.828 72.222 30.82 16.24 36.23 3.20
103 104 4.500116 GCAGGTCGACCCGAGAGC 62.500 72.222 30.82 21.57 36.23 4.09
104 105 3.827898 CAGGTCGACCCGAGAGCC 61.828 72.222 30.82 3.34 36.23 4.70
105 106 4.049817 AGGTCGACCCGAGAGCCT 62.050 66.667 30.82 6.96 36.23 4.58
106 107 3.519930 GGTCGACCCGAGAGCCTC 61.520 72.222 24.75 0.00 36.23 4.70
107 108 2.438795 GTCGACCCGAGAGCCTCT 60.439 66.667 3.51 0.00 36.23 3.69
108 109 2.047443 GTCGACCCGAGAGCCTCTT 61.047 63.158 3.51 0.00 36.23 2.85
109 110 1.749638 TCGACCCGAGAGCCTCTTC 60.750 63.158 0.00 0.00 0.00 2.87
110 111 2.046864 CGACCCGAGAGCCTCTTCA 61.047 63.158 0.00 0.00 0.00 3.02
111 112 1.513622 GACCCGAGAGCCTCTTCAC 59.486 63.158 0.00 0.00 0.00 3.18
112 113 2.272918 GACCCGAGAGCCTCTTCACG 62.273 65.000 0.00 0.00 0.00 4.35
113 114 2.492090 CCGAGAGCCTCTTCACGG 59.508 66.667 6.01 6.01 43.07 4.94
114 115 3.708220 CCGAGAGCCTCTTCACGGC 62.708 68.421 7.33 0.00 42.68 5.68
132 133 2.504244 GGCGACGTCGAGGTTGAG 60.504 66.667 39.74 14.99 43.02 3.02
133 134 3.173240 GCGACGTCGAGGTTGAGC 61.173 66.667 39.74 19.83 43.02 4.26
134 135 2.254350 CGACGTCGAGGTTGAGCA 59.746 61.111 33.35 0.00 43.02 4.26
135 136 2.081212 CGACGTCGAGGTTGAGCAC 61.081 63.158 33.35 1.32 43.02 4.40
136 137 1.007734 GACGTCGAGGTTGAGCACA 60.008 57.895 12.67 0.00 0.00 4.57
137 138 1.276145 GACGTCGAGGTTGAGCACAC 61.276 60.000 12.67 0.00 0.00 3.82
138 139 2.022129 CGTCGAGGTTGAGCACACC 61.022 63.158 0.00 0.00 0.00 4.16
139 140 2.022129 GTCGAGGTTGAGCACACCG 61.022 63.158 0.00 0.00 0.00 4.94
140 141 3.414700 CGAGGTTGAGCACACCGC 61.415 66.667 0.00 0.00 42.91 5.68
166 167 3.721706 CCAGGGAGGCAGGTGGAC 61.722 72.222 0.00 0.00 31.04 4.02
167 168 2.930019 CAGGGAGGCAGGTGGACA 60.930 66.667 0.00 0.00 0.00 4.02
168 169 2.125912 AGGGAGGCAGGTGGACAT 59.874 61.111 0.00 0.00 0.00 3.06
169 170 2.273449 GGGAGGCAGGTGGACATG 59.727 66.667 0.00 0.00 0.00 3.21
170 171 2.300967 GGGAGGCAGGTGGACATGA 61.301 63.158 0.00 0.00 0.00 3.07
171 172 1.222936 GGAGGCAGGTGGACATGAG 59.777 63.158 0.00 0.00 0.00 2.90
172 173 1.451028 GAGGCAGGTGGACATGAGC 60.451 63.158 0.00 0.00 0.00 4.26
173 174 2.821366 GGCAGGTGGACATGAGCG 60.821 66.667 0.00 0.00 0.00 5.03
174 175 2.821366 GCAGGTGGACATGAGCGG 60.821 66.667 0.00 0.00 0.00 5.52
175 176 2.821366 CAGGTGGACATGAGCGGC 60.821 66.667 0.00 0.00 0.00 6.53
176 177 3.321648 AGGTGGACATGAGCGGCA 61.322 61.111 0.00 0.00 0.00 5.69
177 178 2.359850 GGTGGACATGAGCGGCAA 60.360 61.111 0.00 0.00 0.00 4.52
178 179 2.690778 GGTGGACATGAGCGGCAAC 61.691 63.158 0.00 0.00 0.00 4.17
179 180 1.965930 GTGGACATGAGCGGCAACA 60.966 57.895 0.00 2.23 0.00 3.33
180 181 1.228094 TGGACATGAGCGGCAACAA 60.228 52.632 0.00 0.00 0.00 2.83
181 182 0.608856 TGGACATGAGCGGCAACAAT 60.609 50.000 0.00 0.00 0.00 2.71
182 183 0.179156 GGACATGAGCGGCAACAATG 60.179 55.000 0.00 2.84 0.00 2.82
192 193 3.353600 CAACAATGCAGTGCGGGA 58.646 55.556 15.18 0.00 0.00 5.14
193 194 1.210931 CAACAATGCAGTGCGGGAG 59.789 57.895 15.18 2.87 0.00 4.30
194 195 1.073025 AACAATGCAGTGCGGGAGA 59.927 52.632 15.18 0.00 0.00 3.71
195 196 0.957395 AACAATGCAGTGCGGGAGAG 60.957 55.000 15.18 0.00 0.00 3.20
196 197 1.078918 CAATGCAGTGCGGGAGAGA 60.079 57.895 11.20 0.00 0.00 3.10
197 198 1.088340 CAATGCAGTGCGGGAGAGAG 61.088 60.000 11.20 0.00 0.00 3.20
198 199 2.249413 AATGCAGTGCGGGAGAGAGG 62.249 60.000 11.20 0.00 0.00 3.69
199 200 3.071206 GCAGTGCGGGAGAGAGGA 61.071 66.667 0.00 0.00 0.00 3.71
200 201 2.650116 GCAGTGCGGGAGAGAGGAA 61.650 63.158 0.00 0.00 0.00 3.36
201 202 1.515020 CAGTGCGGGAGAGAGGAAG 59.485 63.158 0.00 0.00 0.00 3.46
202 203 1.684049 AGTGCGGGAGAGAGGAAGG 60.684 63.158 0.00 0.00 0.00 3.46
203 204 3.077556 TGCGGGAGAGAGGAAGGC 61.078 66.667 0.00 0.00 0.00 4.35
204 205 2.762043 GCGGGAGAGAGGAAGGCT 60.762 66.667 0.00 0.00 0.00 4.58
205 206 3.087666 GCGGGAGAGAGGAAGGCTG 62.088 68.421 0.00 0.00 0.00 4.85
206 207 2.430610 CGGGAGAGAGGAAGGCTGG 61.431 68.421 0.00 0.00 0.00 4.85
207 208 1.306568 GGGAGAGAGGAAGGCTGGT 60.307 63.158 0.00 0.00 0.00 4.00
208 209 1.334384 GGGAGAGAGGAAGGCTGGTC 61.334 65.000 0.00 0.00 0.00 4.02
209 210 1.334384 GGAGAGAGGAAGGCTGGTCC 61.334 65.000 0.00 0.00 35.17 4.46
211 212 1.011595 AGAGAGGAAGGCTGGTCCTA 58.988 55.000 7.73 0.00 46.94 2.94
212 213 1.063266 AGAGAGGAAGGCTGGTCCTAG 60.063 57.143 7.73 0.00 46.94 3.02
213 214 1.011595 AGAGGAAGGCTGGTCCTAGA 58.988 55.000 7.73 0.00 46.94 2.43
214 215 1.063266 AGAGGAAGGCTGGTCCTAGAG 60.063 57.143 7.73 0.00 46.94 2.43
215 216 0.031616 AGGAAGGCTGGTCCTAGAGG 60.032 60.000 5.94 0.00 46.94 3.69
216 217 0.325765 GGAAGGCTGGTCCTAGAGGT 60.326 60.000 0.00 0.00 46.94 3.85
217 218 0.827368 GAAGGCTGGTCCTAGAGGTG 59.173 60.000 0.00 0.00 46.94 4.00
218 219 0.618968 AAGGCTGGTCCTAGAGGTGG 60.619 60.000 0.00 0.00 46.94 4.61
219 220 1.001760 GGCTGGTCCTAGAGGTGGA 59.998 63.158 0.00 0.00 36.34 4.02
220 221 1.045911 GGCTGGTCCTAGAGGTGGAG 61.046 65.000 0.00 0.00 33.78 3.86
221 222 1.045911 GCTGGTCCTAGAGGTGGAGG 61.046 65.000 0.00 0.00 33.78 4.30
222 223 0.397816 CTGGTCCTAGAGGTGGAGGG 60.398 65.000 0.00 0.00 33.78 4.30
223 224 0.854039 TGGTCCTAGAGGTGGAGGGA 60.854 60.000 0.00 0.00 33.78 4.20
224 225 0.338814 GGTCCTAGAGGTGGAGGGAA 59.661 60.000 0.00 0.00 33.78 3.97
225 226 1.062044 GGTCCTAGAGGTGGAGGGAAT 60.062 57.143 0.00 0.00 33.78 3.01
226 227 2.179424 GGTCCTAGAGGTGGAGGGAATA 59.821 54.545 0.00 0.00 33.78 1.75
227 228 3.502356 GTCCTAGAGGTGGAGGGAATAG 58.498 54.545 0.00 0.00 33.78 1.73
228 229 3.117054 GTCCTAGAGGTGGAGGGAATAGT 60.117 52.174 0.00 0.00 33.78 2.12
229 230 3.536434 TCCTAGAGGTGGAGGGAATAGTT 59.464 47.826 0.00 0.00 36.34 2.24
230 231 3.898741 CCTAGAGGTGGAGGGAATAGTTC 59.101 52.174 0.00 0.00 0.00 3.01
231 232 2.389715 AGAGGTGGAGGGAATAGTTCG 58.610 52.381 0.00 0.00 0.00 3.95
232 233 2.108970 GAGGTGGAGGGAATAGTTCGT 58.891 52.381 0.00 0.00 0.00 3.85
233 234 2.101082 GAGGTGGAGGGAATAGTTCGTC 59.899 54.545 0.00 0.00 0.00 4.20
234 235 1.138464 GGTGGAGGGAATAGTTCGTCC 59.862 57.143 3.18 3.18 35.23 4.79
235 236 1.829222 GTGGAGGGAATAGTTCGTCCA 59.171 52.381 8.80 8.80 39.69 4.02
236 237 2.434702 GTGGAGGGAATAGTTCGTCCAT 59.565 50.000 15.46 0.00 42.20 3.41
237 238 3.112263 TGGAGGGAATAGTTCGTCCATT 58.888 45.455 8.80 0.00 38.09 3.16
238 239 3.521937 TGGAGGGAATAGTTCGTCCATTT 59.478 43.478 8.80 0.00 38.09 2.32
239 240 4.018779 TGGAGGGAATAGTTCGTCCATTTT 60.019 41.667 8.80 0.00 38.09 1.82
240 241 4.335594 GGAGGGAATAGTTCGTCCATTTTG 59.664 45.833 5.33 0.00 34.94 2.44
241 242 4.270008 AGGGAATAGTTCGTCCATTTTGG 58.730 43.478 0.00 0.00 39.43 3.28
242 243 4.014406 GGGAATAGTTCGTCCATTTTGGT 58.986 43.478 0.00 0.00 39.03 3.67
243 244 4.095932 GGGAATAGTTCGTCCATTTTGGTC 59.904 45.833 0.00 0.00 39.03 4.02
244 245 4.095932 GGAATAGTTCGTCCATTTTGGTCC 59.904 45.833 0.00 0.00 39.03 4.46
245 246 2.951229 AGTTCGTCCATTTTGGTCCT 57.049 45.000 0.00 0.00 39.03 3.85
246 247 2.504367 AGTTCGTCCATTTTGGTCCTG 58.496 47.619 0.00 0.00 39.03 3.86
247 248 2.158667 AGTTCGTCCATTTTGGTCCTGT 60.159 45.455 0.00 0.00 39.03 4.00
248 249 2.178912 TCGTCCATTTTGGTCCTGTC 57.821 50.000 0.00 0.00 39.03 3.51
249 250 0.796312 CGTCCATTTTGGTCCTGTCG 59.204 55.000 0.00 0.00 39.03 4.35
250 251 0.521735 GTCCATTTTGGTCCTGTCGC 59.478 55.000 0.00 0.00 39.03 5.19
251 252 0.953471 TCCATTTTGGTCCTGTCGCG 60.953 55.000 0.00 0.00 39.03 5.87
252 253 1.234615 CCATTTTGGTCCTGTCGCGT 61.235 55.000 5.77 0.00 31.35 6.01
253 254 0.591170 CATTTTGGTCCTGTCGCGTT 59.409 50.000 5.77 0.00 0.00 4.84
254 255 0.591170 ATTTTGGTCCTGTCGCGTTG 59.409 50.000 5.77 0.00 0.00 4.10
255 256 1.440938 TTTTGGTCCTGTCGCGTTGG 61.441 55.000 5.77 7.24 0.00 3.77
256 257 3.818121 TTGGTCCTGTCGCGTTGGG 62.818 63.158 5.77 6.83 0.00 4.12
257 258 4.309950 GGTCCTGTCGCGTTGGGT 62.310 66.667 5.77 0.00 0.00 4.51
258 259 3.041940 GTCCTGTCGCGTTGGGTG 61.042 66.667 5.77 0.00 0.00 4.61
259 260 4.980805 TCCTGTCGCGTTGGGTGC 62.981 66.667 5.77 0.00 0.00 5.01
261 262 3.716006 CTGTCGCGTTGGGTGCAG 61.716 66.667 5.77 1.03 0.00 4.41
262 263 4.228567 TGTCGCGTTGGGTGCAGA 62.229 61.111 5.77 0.00 0.00 4.26
263 264 2.742372 GTCGCGTTGGGTGCAGAT 60.742 61.111 5.77 0.00 0.00 2.90
264 265 2.741985 TCGCGTTGGGTGCAGATG 60.742 61.111 5.77 0.00 0.00 2.90
265 266 3.049674 CGCGTTGGGTGCAGATGT 61.050 61.111 0.00 0.00 0.00 3.06
266 267 2.562912 GCGTTGGGTGCAGATGTG 59.437 61.111 0.00 0.00 0.00 3.21
267 268 2.260869 GCGTTGGGTGCAGATGTGT 61.261 57.895 0.00 0.00 0.00 3.72
268 269 1.868997 CGTTGGGTGCAGATGTGTC 59.131 57.895 0.00 0.00 0.00 3.67
269 270 1.577328 CGTTGGGTGCAGATGTGTCC 61.577 60.000 0.00 0.00 0.00 4.02
270 271 1.074775 TTGGGTGCAGATGTGTCCC 59.925 57.895 14.95 14.95 39.14 4.46
271 272 2.044946 GGGTGCAGATGTGTCCCC 60.045 66.667 12.08 8.19 35.35 4.81
272 273 2.044946 GGTGCAGATGTGTCCCCC 60.045 66.667 0.00 0.00 0.00 5.40
273 274 2.756400 GTGCAGATGTGTCCCCCA 59.244 61.111 0.00 0.00 0.00 4.96
274 275 1.074775 GTGCAGATGTGTCCCCCAA 59.925 57.895 0.00 0.00 0.00 4.12
275 276 1.074775 TGCAGATGTGTCCCCCAAC 59.925 57.895 0.00 0.00 0.00 3.77
276 277 1.678970 GCAGATGTGTCCCCCAACC 60.679 63.158 0.00 0.00 0.00 3.77
277 278 1.377202 CAGATGTGTCCCCCAACCG 60.377 63.158 0.00 0.00 0.00 4.44
278 279 1.846124 AGATGTGTCCCCCAACCGT 60.846 57.895 0.00 0.00 0.00 4.83
279 280 1.376812 GATGTGTCCCCCAACCGTC 60.377 63.158 0.00 0.00 0.00 4.79
280 281 2.814913 GATGTGTCCCCCAACCGTCC 62.815 65.000 0.00 0.00 0.00 4.79
281 282 3.246880 GTGTCCCCCAACCGTCCT 61.247 66.667 0.00 0.00 0.00 3.85
282 283 2.926242 TGTCCCCCAACCGTCCTC 60.926 66.667 0.00 0.00 0.00 3.71
283 284 2.606826 GTCCCCCAACCGTCCTCT 60.607 66.667 0.00 0.00 0.00 3.69
284 285 2.284405 TCCCCCAACCGTCCTCTC 60.284 66.667 0.00 0.00 0.00 3.20
285 286 2.284699 CCCCCAACCGTCCTCTCT 60.285 66.667 0.00 0.00 0.00 3.10
286 287 2.359967 CCCCCAACCGTCCTCTCTC 61.360 68.421 0.00 0.00 0.00 3.20
287 288 2.359967 CCCCAACCGTCCTCTCTCC 61.360 68.421 0.00 0.00 0.00 3.71
288 289 2.711922 CCCAACCGTCCTCTCTCCG 61.712 68.421 0.00 0.00 0.00 4.63
289 290 2.711922 CCAACCGTCCTCTCTCCGG 61.712 68.421 0.00 0.00 46.93 5.14
290 291 1.677966 CAACCGTCCTCTCTCCGGA 60.678 63.158 2.93 2.93 44.41 5.14
291 292 1.678300 AACCGTCCTCTCTCCGGAC 60.678 63.158 0.00 0.00 44.41 4.79
294 295 3.519930 GTCCTCTCTCCGGACGCC 61.520 72.222 0.00 0.00 41.29 5.68
295 296 3.729489 TCCTCTCTCCGGACGCCT 61.729 66.667 0.00 0.00 0.00 5.52
296 297 2.192443 CCTCTCTCCGGACGCCTA 59.808 66.667 0.00 0.00 0.00 3.93
297 298 1.228306 CCTCTCTCCGGACGCCTAT 60.228 63.158 0.00 0.00 0.00 2.57
298 299 1.238625 CCTCTCTCCGGACGCCTATC 61.239 65.000 0.00 0.00 0.00 2.08
299 300 1.570347 CTCTCTCCGGACGCCTATCG 61.570 65.000 0.00 0.00 45.38 2.92
310 311 1.337821 CGCCTATCGTTTCGCTATCC 58.662 55.000 0.00 0.00 0.00 2.59
311 312 1.335597 CGCCTATCGTTTCGCTATCCA 60.336 52.381 0.00 0.00 0.00 3.41
312 313 2.750948 GCCTATCGTTTCGCTATCCAA 58.249 47.619 0.00 0.00 0.00 3.53
313 314 3.128349 GCCTATCGTTTCGCTATCCAAA 58.872 45.455 0.00 0.00 0.00 3.28
314 315 3.059800 GCCTATCGTTTCGCTATCCAAAC 60.060 47.826 0.00 0.00 0.00 2.93
318 319 2.800694 GTTTCGCTATCCAAACGGAC 57.199 50.000 0.00 0.00 34.62 4.79
319 320 2.070783 GTTTCGCTATCCAAACGGACA 58.929 47.619 0.00 0.00 34.62 4.02
320 321 2.459060 TTCGCTATCCAAACGGACAA 57.541 45.000 0.00 0.00 34.62 3.18
321 322 2.459060 TCGCTATCCAAACGGACAAA 57.541 45.000 0.00 0.00 34.62 2.83
322 323 2.980568 TCGCTATCCAAACGGACAAAT 58.019 42.857 0.00 0.00 34.62 2.32
323 324 2.675844 TCGCTATCCAAACGGACAAATG 59.324 45.455 0.00 0.00 34.62 2.32
324 325 2.418628 CGCTATCCAAACGGACAAATGT 59.581 45.455 0.00 0.00 34.62 2.71
325 326 3.119990 CGCTATCCAAACGGACAAATGTT 60.120 43.478 0.00 0.00 34.62 2.71
326 327 4.614993 CGCTATCCAAACGGACAAATGTTT 60.615 41.667 0.00 0.00 38.76 2.83
331 332 4.436365 CAAACGGACAAATGTTTGCTTC 57.564 40.909 5.44 0.00 45.64 3.86
332 333 2.793278 ACGGACAAATGTTTGCTTCC 57.207 45.000 5.44 5.47 41.79 3.46
333 334 1.685302 CGGACAAATGTTTGCTTCCG 58.315 50.000 17.45 17.45 44.62 4.30
334 335 1.001815 CGGACAAATGTTTGCTTCCGT 60.002 47.619 20.52 0.00 44.78 4.69
335 336 2.542824 CGGACAAATGTTTGCTTCCGTT 60.543 45.455 20.52 0.00 44.78 4.44
336 337 3.453424 GGACAAATGTTTGCTTCCGTTT 58.547 40.909 5.44 0.00 41.79 3.60
337 338 3.245048 GGACAAATGTTTGCTTCCGTTTG 59.755 43.478 5.44 10.94 41.79 2.93
338 339 3.194062 ACAAATGTTTGCTTCCGTTTGG 58.806 40.909 14.70 0.00 40.31 3.28
339 340 2.524569 AATGTTTGCTTCCGTTTGGG 57.475 45.000 0.00 0.00 35.24 4.12
340 341 0.678950 ATGTTTGCTTCCGTTTGGGG 59.321 50.000 0.00 0.00 36.01 4.96
341 342 0.684805 TGTTTGCTTCCGTTTGGGGT 60.685 50.000 0.00 0.00 36.01 4.95
342 343 0.031585 GTTTGCTTCCGTTTGGGGTC 59.968 55.000 0.00 0.00 36.01 4.46
343 344 0.106419 TTTGCTTCCGTTTGGGGTCT 60.106 50.000 0.00 0.00 36.01 3.85
344 345 0.766131 TTGCTTCCGTTTGGGGTCTA 59.234 50.000 0.00 0.00 36.01 2.59
345 346 0.323629 TGCTTCCGTTTGGGGTCTAG 59.676 55.000 0.00 0.00 36.01 2.43
346 347 0.323957 GCTTCCGTTTGGGGTCTAGT 59.676 55.000 0.00 0.00 36.01 2.57
347 348 1.944430 GCTTCCGTTTGGGGTCTAGTG 60.944 57.143 0.00 0.00 36.01 2.74
348 349 1.346722 CTTCCGTTTGGGGTCTAGTGT 59.653 52.381 0.00 0.00 36.01 3.55
349 350 1.426751 TCCGTTTGGGGTCTAGTGTT 58.573 50.000 0.00 0.00 36.01 3.32
350 351 1.071071 TCCGTTTGGGGTCTAGTGTTG 59.929 52.381 0.00 0.00 36.01 3.33
351 352 1.202722 CCGTTTGGGGTCTAGTGTTGT 60.203 52.381 0.00 0.00 0.00 3.32
352 353 2.567985 CGTTTGGGGTCTAGTGTTGTT 58.432 47.619 0.00 0.00 0.00 2.83
353 354 2.289547 CGTTTGGGGTCTAGTGTTGTTG 59.710 50.000 0.00 0.00 0.00 3.33
354 355 3.284617 GTTTGGGGTCTAGTGTTGTTGT 58.715 45.455 0.00 0.00 0.00 3.32
355 356 3.655615 TTGGGGTCTAGTGTTGTTGTT 57.344 42.857 0.00 0.00 0.00 2.83
356 357 2.925724 TGGGGTCTAGTGTTGTTGTTG 58.074 47.619 0.00 0.00 0.00 3.33
357 358 2.227194 GGGGTCTAGTGTTGTTGTTGG 58.773 52.381 0.00 0.00 0.00 3.77
358 359 1.607148 GGGTCTAGTGTTGTTGTTGGC 59.393 52.381 0.00 0.00 0.00 4.52
359 360 1.607148 GGTCTAGTGTTGTTGTTGGCC 59.393 52.381 0.00 0.00 0.00 5.36
360 361 2.572290 GTCTAGTGTTGTTGTTGGCCT 58.428 47.619 3.32 0.00 0.00 5.19
361 362 2.949644 GTCTAGTGTTGTTGTTGGCCTT 59.050 45.455 3.32 0.00 0.00 4.35
362 363 4.131596 GTCTAGTGTTGTTGTTGGCCTTA 58.868 43.478 3.32 0.00 0.00 2.69
363 364 4.577283 GTCTAGTGTTGTTGTTGGCCTTAA 59.423 41.667 3.32 0.00 0.00 1.85
364 365 4.819630 TCTAGTGTTGTTGTTGGCCTTAAG 59.180 41.667 3.32 0.00 0.00 1.85
365 366 2.693074 AGTGTTGTTGTTGGCCTTAAGG 59.307 45.455 17.81 17.81 38.53 2.69
370 371 4.394439 TGTTGTTGGCCTTAAGGTTTTC 57.606 40.909 22.55 11.57 37.57 2.29
379 380 5.068591 TGGCCTTAAGGTTTTCTCAAACTTC 59.931 40.000 22.55 0.70 41.92 3.01
394 398 9.889128 TTCTCAAACTTCATGTATGATGATGTA 57.111 29.630 12.89 4.62 36.01 2.29
408 412 9.244292 GTATGATGATGTACTCAGATAAGGGTA 57.756 37.037 0.00 0.00 37.28 3.69
409 413 7.526142 TGATGATGTACTCAGATAAGGGTAC 57.474 40.000 0.00 0.00 37.28 3.34
410 414 7.066781 TGATGATGTACTCAGATAAGGGTACA 58.933 38.462 9.02 9.02 45.18 2.90
413 417 5.461516 TGTACTCAGATAAGGGTACAGGA 57.538 43.478 2.89 0.00 39.32 3.86
416 420 6.901300 TGTACTCAGATAAGGGTACAGGAAAT 59.099 38.462 2.89 0.00 39.32 2.17
421 425 6.214615 TCAGATAAGGGTACAGGAAATGAACA 59.785 38.462 0.00 0.00 0.00 3.18
422 426 7.056635 CAGATAAGGGTACAGGAAATGAACAT 58.943 38.462 0.00 0.00 0.00 2.71
437 441 6.639632 AATGAACATGTAAAACTGACAGCT 57.360 33.333 0.00 0.00 0.00 4.24
439 443 6.785488 TGAACATGTAAAACTGACAGCTAG 57.215 37.500 0.00 0.00 0.00 3.42
464 468 2.693074 TGCTTTTCTCAAGTTCCCAACC 59.307 45.455 0.00 0.00 0.00 3.77
467 471 4.499865 GCTTTTCTCAAGTTCCCAACCTTC 60.500 45.833 0.00 0.00 0.00 3.46
485 489 7.962918 CCAACCTTCATATTTCAACTTTCTACG 59.037 37.037 0.00 0.00 0.00 3.51
486 490 8.717821 CAACCTTCATATTTCAACTTTCTACGA 58.282 33.333 0.00 0.00 0.00 3.43
552 561 0.806102 CAGATGTCGGCCCTTACGTG 60.806 60.000 0.00 0.00 0.00 4.49
555 564 1.537814 ATGTCGGCCCTTACGTGACA 61.538 55.000 9.40 9.40 43.02 3.58
556 565 1.217244 GTCGGCCCTTACGTGACAT 59.783 57.895 0.00 0.00 0.00 3.06
567 576 4.926832 CCTTACGTGACATTGACATGTACA 59.073 41.667 17.03 0.00 44.22 2.90
743 756 5.103290 GGCAACAAAAATCAACTAGTCGA 57.897 39.130 0.00 0.00 0.00 4.20
759 972 1.184970 TCGACCAGAGGCACATGACA 61.185 55.000 0.00 0.00 0.00 3.58
760 973 1.016130 CGACCAGAGGCACATGACAC 61.016 60.000 0.00 0.00 0.00 3.67
761 974 0.035317 GACCAGAGGCACATGACACA 59.965 55.000 0.00 0.00 0.00 3.72
780 1017 3.782244 CCTCGAGTTGCGCTGCAC 61.782 66.667 12.31 2.52 38.71 4.57
847 1090 2.051345 CGCAGCCAAACGGACAAC 60.051 61.111 0.00 0.00 0.00 3.32
848 1091 2.335011 GCAGCCAAACGGACAACC 59.665 61.111 0.00 0.00 0.00 3.77
849 1092 2.193536 GCAGCCAAACGGACAACCT 61.194 57.895 0.00 0.00 0.00 3.50
850 1093 1.949257 CAGCCAAACGGACAACCTC 59.051 57.895 0.00 0.00 0.00 3.85
851 1094 0.817634 CAGCCAAACGGACAACCTCA 60.818 55.000 0.00 0.00 0.00 3.86
950 1205 0.179119 CTCCTCGTCCGGCGTTAAAT 60.179 55.000 16.00 0.00 42.13 1.40
976 1246 3.880846 CGGCTCCTTTGCGCATCC 61.881 66.667 12.75 5.11 0.00 3.51
977 1247 3.880846 GGCTCCTTTGCGCATCCG 61.881 66.667 12.75 2.02 37.57 4.18
978 1248 2.819595 GCTCCTTTGCGCATCCGA 60.820 61.111 12.75 5.73 36.29 4.55
979 1249 2.398554 GCTCCTTTGCGCATCCGAA 61.399 57.895 12.75 0.34 36.29 4.30
980 1250 1.425428 CTCCTTTGCGCATCCGAAC 59.575 57.895 12.75 0.00 36.29 3.95
1032 1315 2.360980 CCCACTCTCTCCTCCGGT 59.639 66.667 0.00 0.00 0.00 5.28
1500 1819 1.593787 CCAGTGCTGGTGATCGACT 59.406 57.895 9.96 0.00 45.53 4.18
1505 1824 2.981302 CTGGTGATCGACTGCCCA 59.019 61.111 0.00 0.00 0.00 5.36
1508 1827 2.662596 GTGATCGACTGCCCACCA 59.337 61.111 0.00 0.00 0.00 4.17
1530 1849 2.505557 CCCCGACTAACGCGTCAC 60.506 66.667 14.44 3.42 41.07 3.67
1660 1982 6.405619 GGGTCACTACGCTTCTAGAATAAACT 60.406 42.308 5.44 0.00 35.73 2.66
1678 2003 8.961294 AATAAACTGTAGTACGTACTCTGTTG 57.039 34.615 30.53 18.52 37.73 3.33
1705 2030 3.241239 CGCAACGTACAATTAGTCTCACG 60.241 47.826 0.00 0.00 36.17 4.35
1713 2038 2.196295 ATTAGTCTCACGCTTCGCTC 57.804 50.000 0.00 0.00 0.00 5.03
1903 2244 1.126296 GTACTTTTCTTCTCGCGTGCC 59.874 52.381 5.77 0.00 0.00 5.01
1976 2317 2.067365 AAGCACTCCCGGTTTTCTTT 57.933 45.000 0.00 0.00 0.00 2.52
2010 2351 0.737219 GCTGGTGCTGAATCATCCAC 59.263 55.000 5.85 5.85 36.03 4.02
2072 2413 5.762825 TGAATGAATAGATGCTTTGCTCC 57.237 39.130 0.00 0.00 0.00 4.70
2084 2425 2.476241 GCTTTGCTCCAATTTGGTTTCG 59.524 45.455 14.98 4.34 39.03 3.46
2085 2426 3.716601 CTTTGCTCCAATTTGGTTTCGT 58.283 40.909 14.98 0.00 39.03 3.85
2093 2434 3.356145 CAATTTGGTTTCGTTCGTTCGT 58.644 40.909 2.67 0.00 0.00 3.85
2094 2435 2.438933 TTTGGTTTCGTTCGTTCGTG 57.561 45.000 2.67 0.00 0.00 4.35
2098 2439 2.223456 TGGTTTCGTTCGTTCGTGACTA 60.223 45.455 2.67 0.00 0.00 2.59
2104 2445 2.314122 GTTCGTTCGTGACTACAGGAC 58.686 52.381 0.00 0.00 39.98 3.85
2106 2447 0.453950 CGTTCGTGACTACAGGACGG 60.454 60.000 0.00 0.00 39.98 4.79
2122 2464 2.287909 GGACGGCAGAATCTAGCTACTG 60.288 54.545 5.02 5.02 0.00 2.74
2140 2482 0.388520 TGTCGCTGTCCGTCATGAAG 60.389 55.000 0.00 0.00 38.35 3.02
2143 2485 0.926155 CGCTGTCCGTCATGAAGATG 59.074 55.000 10.47 3.55 0.00 2.90
2148 2490 3.096852 TGTCCGTCATGAAGATGTACCT 58.903 45.455 10.47 0.00 0.00 3.08
2149 2491 4.274978 TGTCCGTCATGAAGATGTACCTA 58.725 43.478 10.47 0.00 0.00 3.08
2150 2492 4.707934 TGTCCGTCATGAAGATGTACCTAA 59.292 41.667 10.47 0.00 0.00 2.69
2151 2493 5.186215 TGTCCGTCATGAAGATGTACCTAAA 59.814 40.000 10.47 0.00 0.00 1.85
2152 2494 6.127168 TGTCCGTCATGAAGATGTACCTAAAT 60.127 38.462 10.47 0.00 0.00 1.40
2153 2495 6.421202 GTCCGTCATGAAGATGTACCTAAATC 59.579 42.308 10.47 0.00 0.00 2.17
2154 2496 6.323996 TCCGTCATGAAGATGTACCTAAATCT 59.676 38.462 10.47 0.00 34.58 2.40
2155 2497 7.504574 TCCGTCATGAAGATGTACCTAAATCTA 59.495 37.037 10.47 0.00 32.79 1.98
2156 2498 7.810282 CCGTCATGAAGATGTACCTAAATCTAG 59.190 40.741 10.47 0.00 32.79 2.43
2160 2502 9.632807 CATGAAGATGTACCTAAATCTAGCTAC 57.367 37.037 0.00 0.00 32.79 3.58
2165 2507 9.148879 AGATGTACCTAAATCTAGCTACAATGT 57.851 33.333 0.00 0.00 32.46 2.71
2168 2510 9.378551 TGTACCTAAATCTAGCTACAATGTTTG 57.621 33.333 0.00 0.00 27.77 2.93
2198 2540 0.747283 AGCATCTACAGCAAGGCAGC 60.747 55.000 0.00 0.00 0.00 5.25
2203 2545 1.072173 TCTACAGCAAGGCAGCTCAAA 59.928 47.619 1.20 0.00 44.54 2.69
2204 2546 1.881973 CTACAGCAAGGCAGCTCAAAA 59.118 47.619 1.20 0.00 44.54 2.44
2211 2553 2.256461 GCAGCTCAAAACGGCCAG 59.744 61.111 2.24 0.00 0.00 4.85
2267 2616 2.280592 ACAAACGCCCGGACTGTC 60.281 61.111 0.73 0.00 0.00 3.51
2296 2645 4.398319 CCCGTATATCAAGCCCAAATCTT 58.602 43.478 0.00 0.00 0.00 2.40
2316 2665 3.178540 AACGGATATGAGGCGGCCC 62.179 63.158 17.02 8.02 0.00 5.80
2344 2693 4.598257 GTGAGTCCACCACATCCG 57.402 61.111 0.00 0.00 37.33 4.18
2346 2695 0.537188 GTGAGTCCACCACATCCGAT 59.463 55.000 0.00 0.00 37.33 4.18
2347 2696 1.066143 GTGAGTCCACCACATCCGATT 60.066 52.381 0.00 0.00 37.33 3.34
2355 2704 1.344763 ACCACATCCGATTAGCCTAGC 59.655 52.381 0.00 0.00 0.00 3.42
2384 2734 0.537371 CCTCGCCCCCACAAATATCC 60.537 60.000 0.00 0.00 0.00 2.59
2387 2737 0.182537 CGCCCCCACAAATATCCTCA 59.817 55.000 0.00 0.00 0.00 3.86
2390 2740 2.819348 GCCCCCACAAATATCCTCATCC 60.819 54.545 0.00 0.00 0.00 3.51
2391 2741 2.553028 CCCCCACAAATATCCTCATCCG 60.553 54.545 0.00 0.00 0.00 4.18
2392 2742 2.553028 CCCCACAAATATCCTCATCCGG 60.553 54.545 0.00 0.00 0.00 5.14
2406 2756 4.186077 TCATCCGGAGAATCTTAGAGGT 57.814 45.455 11.34 0.00 33.73 3.85
2425 2775 3.025262 GGTCTAGACCGAAGTCCAATCT 58.975 50.000 25.83 0.00 44.72 2.40
2426 2776 3.181485 GGTCTAGACCGAAGTCCAATCTG 60.181 52.174 25.83 0.00 44.72 2.90
2437 2787 4.810191 AGTCCAATCTGTTAGTCCACTC 57.190 45.455 0.00 0.00 0.00 3.51
2443 2793 2.526432 TCTGTTAGTCCACTCCACTCC 58.474 52.381 0.00 0.00 0.00 3.85
2450 2800 0.252284 TCCACTCCACTCCCTTCTCC 60.252 60.000 0.00 0.00 0.00 3.71
2455 2805 1.609501 CCACTCCCTTCTCCGTCCA 60.610 63.158 0.00 0.00 0.00 4.02
2469 2819 0.314302 CGTCCACTCCACTTCGAGTT 59.686 55.000 0.00 0.00 41.23 3.01
2474 2824 1.344763 CACTCCACTTCGAGTTCCCTT 59.655 52.381 0.00 0.00 41.23 3.95
2481 2831 2.826725 ACTTCGAGTTCCCTTCGATTCT 59.173 45.455 0.00 0.00 45.38 2.40
2483 2833 2.168496 TCGAGTTCCCTTCGATTCTGT 58.832 47.619 0.00 0.00 41.68 3.41
2493 2843 0.534873 TCGATTCTGTTCGATGGCCA 59.465 50.000 8.56 8.56 42.81 5.36
2494 2844 0.933097 CGATTCTGTTCGATGGCCAG 59.067 55.000 13.05 0.00 41.62 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.062177 GCTAACCGCACCCTAGGGA 61.062 63.158 35.38 9.02 38.92 4.20
35 36 2.435059 GAAGGGGAGCACGAGCAC 60.435 66.667 7.77 0.00 45.49 4.40
36 37 4.069232 CGAAGGGGAGCACGAGCA 62.069 66.667 7.77 0.00 45.49 4.26
37 38 3.760035 TCGAAGGGGAGCACGAGC 61.760 66.667 0.00 0.00 42.56 5.03
38 39 2.182030 GTCGAAGGGGAGCACGAG 59.818 66.667 0.00 0.00 35.52 4.18
39 40 2.282958 AGTCGAAGGGGAGCACGA 60.283 61.111 0.00 0.00 0.00 4.35
40 41 2.125912 CAGTCGAAGGGGAGCACG 60.126 66.667 0.00 0.00 0.00 5.34
41 42 2.266055 CCAGTCGAAGGGGAGCAC 59.734 66.667 0.00 0.00 0.00 4.40
42 43 3.706373 GCCAGTCGAAGGGGAGCA 61.706 66.667 7.23 0.00 0.00 4.26
43 44 4.475135 GGCCAGTCGAAGGGGAGC 62.475 72.222 0.00 0.00 0.00 4.70
44 45 3.787001 GGGCCAGTCGAAGGGGAG 61.787 72.222 4.39 0.00 0.00 4.30
60 61 3.410516 TTGTGATCGTGCACGCGG 61.411 61.111 33.63 9.28 41.63 6.46
61 62 2.202046 GTTGTGATCGTGCACGCG 60.202 61.111 33.63 12.80 41.63 6.01
62 63 2.202046 CGTTGTGATCGTGCACGC 60.202 61.111 33.63 21.11 41.63 5.34
63 64 1.412226 CTCGTTGTGATCGTGCACG 59.588 57.895 32.76 32.76 41.63 5.34
64 65 1.130613 GCTCGTTGTGATCGTGCAC 59.869 57.895 6.82 6.82 43.81 4.57
65 66 1.006220 AGCTCGTTGTGATCGTGCA 60.006 52.632 13.09 0.00 45.75 4.57
66 67 1.704582 GAGCTCGTTGTGATCGTGC 59.295 57.895 0.00 0.00 44.40 5.34
67 68 1.406219 CCGAGCTCGTTGTGATCGTG 61.406 60.000 32.41 11.04 37.74 4.35
68 69 1.154016 CCGAGCTCGTTGTGATCGT 60.154 57.895 32.41 0.00 37.74 3.73
69 70 2.508891 GCCGAGCTCGTTGTGATCG 61.509 63.158 32.41 16.66 37.74 3.69
70 71 1.416813 CTGCCGAGCTCGTTGTGATC 61.417 60.000 32.41 13.48 37.74 2.92
71 72 1.446792 CTGCCGAGCTCGTTGTGAT 60.447 57.895 32.41 0.00 37.74 3.06
72 73 2.049156 CTGCCGAGCTCGTTGTGA 60.049 61.111 32.41 11.71 37.74 3.58
73 74 3.114616 CCTGCCGAGCTCGTTGTG 61.115 66.667 32.41 19.15 37.74 3.33
74 75 3.575351 GACCTGCCGAGCTCGTTGT 62.575 63.158 32.41 22.57 37.74 3.32
75 76 2.811317 GACCTGCCGAGCTCGTTG 60.811 66.667 32.41 20.23 37.74 4.10
76 77 4.421479 CGACCTGCCGAGCTCGTT 62.421 66.667 32.41 12.63 37.74 3.85
78 79 4.838486 GTCGACCTGCCGAGCTCG 62.838 72.222 29.06 29.06 39.43 5.03
85 86 3.827898 CTCTCGGGTCGACCTGCC 61.828 72.222 34.48 17.81 42.21 4.85
86 87 4.500116 GCTCTCGGGTCGACCTGC 62.500 72.222 34.48 24.03 42.21 4.85
87 88 3.827898 GGCTCTCGGGTCGACCTG 61.828 72.222 33.73 33.73 43.86 4.00
88 89 3.999297 GAGGCTCTCGGGTCGACCT 62.999 68.421 32.52 11.62 33.61 3.85
89 90 3.519930 GAGGCTCTCGGGTCGACC 61.520 72.222 27.04 27.04 0.00 4.79
90 91 1.995646 GAAGAGGCTCTCGGGTCGAC 61.996 65.000 19.03 7.13 35.36 4.20
91 92 1.749638 GAAGAGGCTCTCGGGTCGA 60.750 63.158 19.03 0.00 35.36 4.20
92 93 2.046864 TGAAGAGGCTCTCGGGTCG 61.047 63.158 19.03 0.00 35.36 4.79
93 94 1.513622 GTGAAGAGGCTCTCGGGTC 59.486 63.158 19.03 12.13 35.36 4.46
94 95 2.344203 CGTGAAGAGGCTCTCGGGT 61.344 63.158 19.03 0.91 35.36 5.28
95 96 2.492090 CGTGAAGAGGCTCTCGGG 59.508 66.667 19.03 4.00 35.36 5.14
96 97 2.492090 CCGTGAAGAGGCTCTCGG 59.508 66.667 23.41 23.41 43.61 4.63
114 115 4.394078 TCAACCTCGACGTCGCCG 62.394 66.667 32.19 24.57 39.60 6.46
115 116 2.504244 CTCAACCTCGACGTCGCC 60.504 66.667 32.19 0.00 39.60 5.54
116 117 3.173240 GCTCAACCTCGACGTCGC 61.173 66.667 32.19 12.44 39.60 5.19
117 118 2.081212 GTGCTCAACCTCGACGTCG 61.081 63.158 31.30 31.30 41.45 5.12
118 119 1.007734 TGTGCTCAACCTCGACGTC 60.008 57.895 5.18 5.18 0.00 4.34
119 120 1.299926 GTGTGCTCAACCTCGACGT 60.300 57.895 0.00 0.00 0.00 4.34
120 121 2.022129 GGTGTGCTCAACCTCGACG 61.022 63.158 0.00 0.00 0.00 5.12
121 122 2.022129 CGGTGTGCTCAACCTCGAC 61.022 63.158 0.00 0.00 0.00 4.20
122 123 2.338620 CGGTGTGCTCAACCTCGA 59.661 61.111 0.00 0.00 0.00 4.04
123 124 3.414700 GCGGTGTGCTCAACCTCG 61.415 66.667 0.00 0.00 41.73 4.63
149 150 3.721706 GTCCACCTGCCTCCCTGG 61.722 72.222 0.00 0.00 38.43 4.45
150 151 2.304056 ATGTCCACCTGCCTCCCTG 61.304 63.158 0.00 0.00 0.00 4.45
151 152 2.125912 ATGTCCACCTGCCTCCCT 59.874 61.111 0.00 0.00 0.00 4.20
152 153 2.262774 CTCATGTCCACCTGCCTCCC 62.263 65.000 0.00 0.00 0.00 4.30
153 154 1.222936 CTCATGTCCACCTGCCTCC 59.777 63.158 0.00 0.00 0.00 4.30
154 155 1.451028 GCTCATGTCCACCTGCCTC 60.451 63.158 0.00 0.00 0.00 4.70
155 156 2.673523 GCTCATGTCCACCTGCCT 59.326 61.111 0.00 0.00 0.00 4.75
156 157 2.821366 CGCTCATGTCCACCTGCC 60.821 66.667 0.00 0.00 0.00 4.85
157 158 2.821366 CCGCTCATGTCCACCTGC 60.821 66.667 0.00 0.00 0.00 4.85
158 159 2.821366 GCCGCTCATGTCCACCTG 60.821 66.667 0.00 0.00 0.00 4.00
159 160 2.894257 TTGCCGCTCATGTCCACCT 61.894 57.895 0.00 0.00 0.00 4.00
160 161 2.359850 TTGCCGCTCATGTCCACC 60.360 61.111 0.00 0.00 0.00 4.61
161 162 1.514678 TTGTTGCCGCTCATGTCCAC 61.515 55.000 0.00 0.00 0.00 4.02
162 163 0.608856 ATTGTTGCCGCTCATGTCCA 60.609 50.000 0.00 0.00 0.00 4.02
163 164 0.179156 CATTGTTGCCGCTCATGTCC 60.179 55.000 0.00 0.00 0.00 4.02
164 165 0.799534 GCATTGTTGCCGCTCATGTC 60.800 55.000 0.00 0.00 43.38 3.06
165 166 1.213537 GCATTGTTGCCGCTCATGT 59.786 52.632 0.00 0.00 43.38 3.21
166 167 4.082192 GCATTGTTGCCGCTCATG 57.918 55.556 0.00 0.00 43.38 3.07
175 176 1.210931 CTCCCGCACTGCATTGTTG 59.789 57.895 5.89 0.00 0.00 3.33
176 177 0.957395 CTCTCCCGCACTGCATTGTT 60.957 55.000 5.89 0.00 0.00 2.83
177 178 1.376424 CTCTCCCGCACTGCATTGT 60.376 57.895 5.89 0.00 0.00 2.71
178 179 1.078918 TCTCTCCCGCACTGCATTG 60.079 57.895 0.00 0.00 0.00 2.82
179 180 1.220206 CTCTCTCCCGCACTGCATT 59.780 57.895 1.11 0.00 0.00 3.56
180 181 2.729479 CCTCTCTCCCGCACTGCAT 61.729 63.158 1.11 0.00 0.00 3.96
181 182 3.385384 CCTCTCTCCCGCACTGCA 61.385 66.667 1.11 0.00 0.00 4.41
182 183 2.570582 CTTCCTCTCTCCCGCACTGC 62.571 65.000 0.00 0.00 0.00 4.40
183 184 1.515020 CTTCCTCTCTCCCGCACTG 59.485 63.158 0.00 0.00 0.00 3.66
184 185 1.684049 CCTTCCTCTCTCCCGCACT 60.684 63.158 0.00 0.00 0.00 4.40
185 186 2.896443 CCTTCCTCTCTCCCGCAC 59.104 66.667 0.00 0.00 0.00 5.34
186 187 3.077556 GCCTTCCTCTCTCCCGCA 61.078 66.667 0.00 0.00 0.00 5.69
187 188 2.762043 AGCCTTCCTCTCTCCCGC 60.762 66.667 0.00 0.00 0.00 6.13
188 189 2.430610 CCAGCCTTCCTCTCTCCCG 61.431 68.421 0.00 0.00 0.00 5.14
189 190 1.306568 ACCAGCCTTCCTCTCTCCC 60.307 63.158 0.00 0.00 0.00 4.30
190 191 1.334384 GGACCAGCCTTCCTCTCTCC 61.334 65.000 0.00 0.00 0.00 3.71
191 192 2.207580 GGACCAGCCTTCCTCTCTC 58.792 63.158 0.00 0.00 0.00 3.20
192 193 4.470764 GGACCAGCCTTCCTCTCT 57.529 61.111 0.00 0.00 0.00 3.10
201 202 1.001760 TCCACCTCTAGGACCAGCC 59.998 63.158 2.23 0.00 38.94 4.85
202 203 1.045911 CCTCCACCTCTAGGACCAGC 61.046 65.000 2.23 0.00 38.94 4.85
203 204 0.397816 CCCTCCACCTCTAGGACCAG 60.398 65.000 2.23 0.00 38.94 4.00
204 205 0.854039 TCCCTCCACCTCTAGGACCA 60.854 60.000 2.23 0.00 38.94 4.02
205 206 0.338814 TTCCCTCCACCTCTAGGACC 59.661 60.000 2.23 0.00 38.94 4.46
206 207 2.480642 ATTCCCTCCACCTCTAGGAC 57.519 55.000 2.23 0.00 38.94 3.85
207 208 3.140143 ACTATTCCCTCCACCTCTAGGA 58.860 50.000 2.23 0.00 38.94 2.94
208 209 3.621682 ACTATTCCCTCCACCTCTAGG 57.378 52.381 0.00 0.00 42.17 3.02
209 210 3.570550 CGAACTATTCCCTCCACCTCTAG 59.429 52.174 0.00 0.00 0.00 2.43
210 211 3.053095 ACGAACTATTCCCTCCACCTCTA 60.053 47.826 0.00 0.00 0.00 2.43
211 212 2.292323 ACGAACTATTCCCTCCACCTCT 60.292 50.000 0.00 0.00 0.00 3.69
212 213 2.101082 GACGAACTATTCCCTCCACCTC 59.899 54.545 0.00 0.00 0.00 3.85
213 214 2.108970 GACGAACTATTCCCTCCACCT 58.891 52.381 0.00 0.00 0.00 4.00
214 215 1.138464 GGACGAACTATTCCCTCCACC 59.862 57.143 0.00 0.00 0.00 4.61
215 216 1.829222 TGGACGAACTATTCCCTCCAC 59.171 52.381 0.00 0.00 31.40 4.02
216 217 2.241281 TGGACGAACTATTCCCTCCA 57.759 50.000 0.00 0.47 33.04 3.86
217 218 3.840124 AATGGACGAACTATTCCCTCC 57.160 47.619 0.00 0.00 0.00 4.30
218 219 4.335594 CCAAAATGGACGAACTATTCCCTC 59.664 45.833 0.00 0.00 40.96 4.30
219 220 4.263771 ACCAAAATGGACGAACTATTCCCT 60.264 41.667 2.85 0.00 40.96 4.20
220 221 4.014406 ACCAAAATGGACGAACTATTCCC 58.986 43.478 2.85 0.00 40.96 3.97
221 222 4.095932 GGACCAAAATGGACGAACTATTCC 59.904 45.833 2.85 0.00 40.96 3.01
222 223 4.941873 AGGACCAAAATGGACGAACTATTC 59.058 41.667 2.85 0.00 40.96 1.75
223 224 4.700213 CAGGACCAAAATGGACGAACTATT 59.300 41.667 2.85 0.00 40.96 1.73
224 225 4.261801 CAGGACCAAAATGGACGAACTAT 58.738 43.478 2.85 0.00 40.96 2.12
225 226 3.071892 ACAGGACCAAAATGGACGAACTA 59.928 43.478 2.85 0.00 40.96 2.24
226 227 2.158667 ACAGGACCAAAATGGACGAACT 60.159 45.455 2.85 0.00 40.96 3.01
227 228 2.225727 GACAGGACCAAAATGGACGAAC 59.774 50.000 2.85 0.00 40.96 3.95
228 229 2.500229 GACAGGACCAAAATGGACGAA 58.500 47.619 2.85 0.00 40.96 3.85
229 230 1.606994 CGACAGGACCAAAATGGACGA 60.607 52.381 2.85 0.00 40.96 4.20
230 231 0.796312 CGACAGGACCAAAATGGACG 59.204 55.000 2.85 0.00 40.96 4.79
231 232 0.521735 GCGACAGGACCAAAATGGAC 59.478 55.000 2.85 0.00 40.96 4.02
232 233 0.953471 CGCGACAGGACCAAAATGGA 60.953 55.000 0.00 0.00 40.96 3.41
233 234 1.234615 ACGCGACAGGACCAAAATGG 61.235 55.000 15.93 0.00 45.02 3.16
234 235 0.591170 AACGCGACAGGACCAAAATG 59.409 50.000 15.93 0.00 0.00 2.32
235 236 0.591170 CAACGCGACAGGACCAAAAT 59.409 50.000 15.93 0.00 0.00 1.82
236 237 1.440938 CCAACGCGACAGGACCAAAA 61.441 55.000 15.93 0.00 0.00 2.44
237 238 1.890041 CCAACGCGACAGGACCAAA 60.890 57.895 15.93 0.00 0.00 3.28
238 239 2.280524 CCAACGCGACAGGACCAA 60.281 61.111 15.93 0.00 0.00 3.67
239 240 4.308458 CCCAACGCGACAGGACCA 62.308 66.667 15.93 0.00 0.00 4.02
240 241 4.309950 ACCCAACGCGACAGGACC 62.310 66.667 15.93 0.00 0.00 4.46
241 242 3.041940 CACCCAACGCGACAGGAC 61.042 66.667 15.93 0.00 0.00 3.85
242 243 4.980805 GCACCCAACGCGACAGGA 62.981 66.667 15.93 0.00 0.00 3.86
244 245 3.716006 CTGCACCCAACGCGACAG 61.716 66.667 15.93 0.89 0.00 3.51
245 246 3.529341 ATCTGCACCCAACGCGACA 62.529 57.895 15.93 0.00 0.00 4.35
246 247 2.742372 ATCTGCACCCAACGCGAC 60.742 61.111 15.93 0.00 0.00 5.19
247 248 2.741985 CATCTGCACCCAACGCGA 60.742 61.111 15.93 0.00 0.00 5.87
248 249 3.049674 ACATCTGCACCCAACGCG 61.050 61.111 3.53 3.53 0.00 6.01
249 250 2.187599 GACACATCTGCACCCAACGC 62.188 60.000 0.00 0.00 0.00 4.84
250 251 1.577328 GGACACATCTGCACCCAACG 61.577 60.000 0.00 0.00 0.00 4.10
251 252 1.244019 GGGACACATCTGCACCCAAC 61.244 60.000 1.51 0.00 37.30 3.77
252 253 1.074775 GGGACACATCTGCACCCAA 59.925 57.895 1.51 0.00 37.30 4.12
253 254 2.756400 GGGACACATCTGCACCCA 59.244 61.111 1.51 0.00 37.30 4.51
254 255 2.044946 GGGGACACATCTGCACCC 60.045 66.667 0.00 0.00 36.87 4.61
255 256 2.044946 GGGGGACACATCTGCACC 60.045 66.667 0.00 0.00 0.00 5.01
256 257 1.074775 TTGGGGGACACATCTGCAC 59.925 57.895 0.00 0.00 0.00 4.57
257 258 1.074775 GTTGGGGGACACATCTGCA 59.925 57.895 0.00 0.00 0.00 4.41
258 259 1.678970 GGTTGGGGGACACATCTGC 60.679 63.158 0.00 0.00 0.00 4.26
259 260 1.377202 CGGTTGGGGGACACATCTG 60.377 63.158 0.00 0.00 0.00 2.90
260 261 1.838073 GACGGTTGGGGGACACATCT 61.838 60.000 0.00 0.00 0.00 2.90
261 262 1.376812 GACGGTTGGGGGACACATC 60.377 63.158 0.00 0.00 0.00 3.06
262 263 2.754375 GACGGTTGGGGGACACAT 59.246 61.111 0.00 0.00 0.00 3.21
263 264 3.562232 GGACGGTTGGGGGACACA 61.562 66.667 0.00 0.00 0.00 3.72
264 265 3.246880 AGGACGGTTGGGGGACAC 61.247 66.667 0.00 0.00 0.00 3.67
265 266 2.926242 GAGGACGGTTGGGGGACA 60.926 66.667 0.00 0.00 0.00 4.02
266 267 2.606826 AGAGGACGGTTGGGGGAC 60.607 66.667 0.00 0.00 0.00 4.46
267 268 2.284405 GAGAGGACGGTTGGGGGA 60.284 66.667 0.00 0.00 0.00 4.81
268 269 2.284699 AGAGAGGACGGTTGGGGG 60.285 66.667 0.00 0.00 0.00 5.40
269 270 2.359967 GGAGAGAGGACGGTTGGGG 61.360 68.421 0.00 0.00 0.00 4.96
270 271 2.711922 CGGAGAGAGGACGGTTGGG 61.712 68.421 0.00 0.00 0.00 4.12
271 272 2.711922 CCGGAGAGAGGACGGTTGG 61.712 68.421 0.00 0.00 42.53 3.77
272 273 2.885861 CCGGAGAGAGGACGGTTG 59.114 66.667 0.00 0.00 42.53 3.77
278 279 1.706995 ATAGGCGTCCGGAGAGAGGA 61.707 60.000 3.06 0.00 34.99 3.71
279 280 1.228306 ATAGGCGTCCGGAGAGAGG 60.228 63.158 3.06 0.00 0.00 3.69
280 281 1.570347 CGATAGGCGTCCGGAGAGAG 61.570 65.000 3.06 0.00 34.64 3.20
281 282 1.597302 CGATAGGCGTCCGGAGAGA 60.597 63.158 3.06 0.00 34.64 3.10
282 283 2.947542 CGATAGGCGTCCGGAGAG 59.052 66.667 3.06 2.79 34.64 3.20
292 293 2.433868 TGGATAGCGAAACGATAGGC 57.566 50.000 0.00 0.00 43.77 3.93
293 294 4.710528 GTTTGGATAGCGAAACGATAGG 57.289 45.455 2.82 0.00 43.77 2.57
311 312 3.453424 GGAAGCAAACATTTGTCCGTTT 58.547 40.909 6.24 0.00 40.24 3.60
312 313 2.542824 CGGAAGCAAACATTTGTCCGTT 60.543 45.455 20.22 5.95 44.78 4.44
313 314 1.001815 CGGAAGCAAACATTTGTCCGT 60.002 47.619 20.22 0.92 44.78 4.69
314 315 1.685302 CGGAAGCAAACATTTGTCCG 58.315 50.000 17.03 17.03 44.62 4.79
315 316 2.793278 ACGGAAGCAAACATTTGTCC 57.207 45.000 6.24 5.34 40.24 4.02
316 317 3.245048 CCAAACGGAAGCAAACATTTGTC 59.755 43.478 6.24 0.00 40.24 3.18
317 318 3.194062 CCAAACGGAAGCAAACATTTGT 58.806 40.909 6.24 0.00 40.24 2.83
318 319 2.543430 CCCAAACGGAAGCAAACATTTG 59.457 45.455 0.00 0.00 41.03 2.32
319 320 2.484594 CCCCAAACGGAAGCAAACATTT 60.485 45.455 0.00 0.00 0.00 2.32
320 321 1.069978 CCCCAAACGGAAGCAAACATT 59.930 47.619 0.00 0.00 0.00 2.71
321 322 0.678950 CCCCAAACGGAAGCAAACAT 59.321 50.000 0.00 0.00 0.00 2.71
322 323 0.684805 ACCCCAAACGGAAGCAAACA 60.685 50.000 0.00 0.00 0.00 2.83
323 324 0.031585 GACCCCAAACGGAAGCAAAC 59.968 55.000 0.00 0.00 0.00 2.93
324 325 0.106419 AGACCCCAAACGGAAGCAAA 60.106 50.000 0.00 0.00 0.00 3.68
325 326 0.766131 TAGACCCCAAACGGAAGCAA 59.234 50.000 0.00 0.00 0.00 3.91
326 327 0.323629 CTAGACCCCAAACGGAAGCA 59.676 55.000 0.00 0.00 0.00 3.91
327 328 0.323957 ACTAGACCCCAAACGGAAGC 59.676 55.000 0.00 0.00 0.00 3.86
328 329 1.346722 ACACTAGACCCCAAACGGAAG 59.653 52.381 0.00 0.00 0.00 3.46
329 330 1.426751 ACACTAGACCCCAAACGGAA 58.573 50.000 0.00 0.00 0.00 4.30
330 331 1.071071 CAACACTAGACCCCAAACGGA 59.929 52.381 0.00 0.00 0.00 4.69
331 332 1.202722 ACAACACTAGACCCCAAACGG 60.203 52.381 0.00 0.00 0.00 4.44
332 333 2.249844 ACAACACTAGACCCCAAACG 57.750 50.000 0.00 0.00 0.00 3.60
333 334 3.284617 ACAACAACACTAGACCCCAAAC 58.715 45.455 0.00 0.00 0.00 2.93
334 335 3.655615 ACAACAACACTAGACCCCAAA 57.344 42.857 0.00 0.00 0.00 3.28
335 336 3.283751 CAACAACAACACTAGACCCCAA 58.716 45.455 0.00 0.00 0.00 4.12
336 337 2.422235 CCAACAACAACACTAGACCCCA 60.422 50.000 0.00 0.00 0.00 4.96
337 338 2.227194 CCAACAACAACACTAGACCCC 58.773 52.381 0.00 0.00 0.00 4.95
338 339 1.607148 GCCAACAACAACACTAGACCC 59.393 52.381 0.00 0.00 0.00 4.46
339 340 1.607148 GGCCAACAACAACACTAGACC 59.393 52.381 0.00 0.00 0.00 3.85
340 341 2.572290 AGGCCAACAACAACACTAGAC 58.428 47.619 5.01 0.00 0.00 2.59
341 342 3.290948 AAGGCCAACAACAACACTAGA 57.709 42.857 5.01 0.00 0.00 2.43
342 343 4.023193 CCTTAAGGCCAACAACAACACTAG 60.023 45.833 9.00 0.00 0.00 2.57
343 344 3.886505 CCTTAAGGCCAACAACAACACTA 59.113 43.478 9.00 0.00 0.00 2.74
344 345 2.693074 CCTTAAGGCCAACAACAACACT 59.307 45.455 9.00 0.00 0.00 3.55
345 346 2.429250 ACCTTAAGGCCAACAACAACAC 59.571 45.455 21.92 0.00 39.32 3.32
346 347 2.741145 ACCTTAAGGCCAACAACAACA 58.259 42.857 21.92 0.00 39.32 3.33
347 348 3.812156 AACCTTAAGGCCAACAACAAC 57.188 42.857 21.92 0.00 39.32 3.32
348 349 4.468153 AGAAAACCTTAAGGCCAACAACAA 59.532 37.500 21.92 0.00 39.32 2.83
349 350 4.027437 AGAAAACCTTAAGGCCAACAACA 58.973 39.130 21.92 0.00 39.32 3.33
350 351 4.098807 TGAGAAAACCTTAAGGCCAACAAC 59.901 41.667 21.92 8.48 39.32 3.32
351 352 4.282496 TGAGAAAACCTTAAGGCCAACAA 58.718 39.130 21.92 0.00 39.32 2.83
352 353 3.904717 TGAGAAAACCTTAAGGCCAACA 58.095 40.909 21.92 11.24 39.32 3.33
353 354 4.929819 TTGAGAAAACCTTAAGGCCAAC 57.070 40.909 21.92 10.79 39.32 3.77
354 355 4.959839 AGTTTGAGAAAACCTTAAGGCCAA 59.040 37.500 21.92 12.33 39.32 4.52
355 356 4.542697 AGTTTGAGAAAACCTTAAGGCCA 58.457 39.130 21.92 7.23 39.32 5.36
356 357 5.068591 TGAAGTTTGAGAAAACCTTAAGGCC 59.931 40.000 21.92 8.39 39.32 5.19
357 358 6.144078 TGAAGTTTGAGAAAACCTTAAGGC 57.856 37.500 21.92 5.06 39.32 4.35
358 359 7.716612 ACATGAAGTTTGAGAAAACCTTAAGG 58.283 34.615 20.42 20.42 42.17 2.69
361 362 9.567776 TCATACATGAAGTTTGAGAAAACCTTA 57.432 29.630 0.00 0.00 33.98 2.69
362 363 8.463930 TCATACATGAAGTTTGAGAAAACCTT 57.536 30.769 0.00 0.00 33.98 3.50
363 364 8.517878 CATCATACATGAAGTTTGAGAAAACCT 58.482 33.333 0.00 0.00 40.68 3.50
364 365 8.514594 TCATCATACATGAAGTTTGAGAAAACC 58.485 33.333 0.00 0.00 40.68 3.27
370 371 9.322773 AGTACATCATCATACATGAAGTTTGAG 57.677 33.333 0.00 0.00 40.68 3.02
379 380 9.583765 CCTTATCTGAGTACATCATCATACATG 57.416 37.037 0.00 0.00 37.28 3.21
391 392 5.461516 TCCTGTACCCTTATCTGAGTACA 57.538 43.478 0.00 6.66 41.96 2.90
392 393 6.786967 TTTCCTGTACCCTTATCTGAGTAC 57.213 41.667 0.00 0.00 36.47 2.73
394 398 5.964477 TCATTTCCTGTACCCTTATCTGAGT 59.036 40.000 0.00 0.00 0.00 3.41
408 412 7.068103 TGTCAGTTTTACATGTTCATTTCCTGT 59.932 33.333 2.30 0.00 0.00 4.00
409 413 7.424803 TGTCAGTTTTACATGTTCATTTCCTG 58.575 34.615 2.30 2.20 0.00 3.86
410 414 7.581213 TGTCAGTTTTACATGTTCATTTCCT 57.419 32.000 2.30 0.00 0.00 3.36
413 417 7.042797 AGCTGTCAGTTTTACATGTTCATTT 57.957 32.000 2.30 0.00 0.00 2.32
416 420 6.288294 ACTAGCTGTCAGTTTTACATGTTCA 58.712 36.000 2.30 0.00 0.00 3.18
421 425 7.106239 AGCATAACTAGCTGTCAGTTTTACAT 58.894 34.615 5.71 0.00 41.61 2.29
422 426 6.464222 AGCATAACTAGCTGTCAGTTTTACA 58.536 36.000 5.71 0.00 41.61 2.41
437 441 6.539173 TGGGAACTTGAGAAAAGCATAACTA 58.461 36.000 0.00 0.00 0.00 2.24
439 443 5.705609 TGGGAACTTGAGAAAAGCATAAC 57.294 39.130 0.00 0.00 0.00 1.89
521 528 2.736721 CCGACATCTGTACACCAGTTTG 59.263 50.000 0.00 0.00 42.19 2.93
522 529 2.870435 GCCGACATCTGTACACCAGTTT 60.870 50.000 0.00 0.00 42.19 2.66
524 531 0.246635 GCCGACATCTGTACACCAGT 59.753 55.000 0.00 0.00 42.19 4.00
525 532 0.460284 GGCCGACATCTGTACACCAG 60.460 60.000 0.00 0.00 42.97 4.00
526 533 1.594833 GGCCGACATCTGTACACCA 59.405 57.895 0.00 0.00 0.00 4.17
527 534 1.153429 GGGCCGACATCTGTACACC 60.153 63.158 0.00 0.00 0.00 4.16
552 561 3.488047 GGCTGCATGTACATGTCAATGTC 60.488 47.826 31.10 18.03 43.85 3.06
555 564 2.686405 CTGGCTGCATGTACATGTCAAT 59.314 45.455 31.10 0.00 40.80 2.57
556 565 2.086094 CTGGCTGCATGTACATGTCAA 58.914 47.619 31.10 18.73 40.80 3.18
743 756 0.250467 GTGTGTCATGTGCCTCTGGT 60.250 55.000 0.00 0.00 0.00 4.00
759 972 3.616721 AGCGCAACTCGAGGGTGT 61.617 61.111 18.41 3.74 41.67 4.16
760 973 3.114616 CAGCGCAACTCGAGGGTG 61.115 66.667 18.41 15.11 41.67 4.61
796 1033 0.179062 CGATTCTCCCTGGGCTTCTG 60.179 60.000 8.22 0.00 0.00 3.02
799 1036 0.035056 CAACGATTCTCCCTGGGCTT 60.035 55.000 8.22 0.00 0.00 4.35
840 1083 1.278637 GTTGCGTTGAGGTTGTCCG 59.721 57.895 0.00 0.00 39.05 4.79
843 1086 2.713154 GCGTTGCGTTGAGGTTGT 59.287 55.556 0.00 0.00 0.00 3.32
869 1121 1.274770 GCTATTCGTTAACGCCGGC 59.725 57.895 22.96 19.07 39.60 6.13
967 1237 2.357638 TTCGGTTCGGATGCGCAA 60.358 55.556 17.11 0.00 0.00 4.85
976 1246 2.506438 GAGGCTCGGTTCGGTTCG 60.506 66.667 0.00 0.00 0.00 3.95
977 1247 2.506438 CGAGGCTCGGTTCGGTTC 60.506 66.667 28.52 0.00 36.00 3.62
978 1248 4.736896 GCGAGGCTCGGTTCGGTT 62.737 66.667 35.03 0.00 40.84 4.44
1505 1824 2.364579 TTAGTCGGGGCGGATGGT 60.365 61.111 0.00 0.00 0.00 3.55
1508 1827 4.217159 GCGTTAGTCGGGGCGGAT 62.217 66.667 0.00 0.00 40.26 4.18
1530 1849 0.161024 GAAAACGTCAGCGACCTTCG 59.839 55.000 0.00 0.00 43.89 3.79
1531 1850 0.161024 CGAAAACGTCAGCGACCTTC 59.839 55.000 0.00 4.06 42.00 3.46
1532 1851 1.219522 CCGAAAACGTCAGCGACCTT 61.220 55.000 5.61 0.00 42.00 3.50
1538 1857 4.084888 CCGGCCGAAAACGTCAGC 62.085 66.667 30.73 0.00 0.00 4.26
1574 1893 1.222387 CATTTCTAACCGCCCGGGA 59.778 57.895 29.31 0.14 39.97 5.14
1660 1982 5.389830 CGCTAACAACAGAGTACGTACTACA 60.390 44.000 27.44 6.56 36.50 2.74
1678 2003 4.325472 AGACTAATTGTACGTTGCGCTAAC 59.675 41.667 9.73 10.69 35.90 2.34
1742 2075 1.075542 CGTCACACACGCCATACATT 58.924 50.000 0.00 0.00 42.87 2.71
1935 2276 3.325293 GAAGCATTCAGACTCCACAGA 57.675 47.619 0.00 0.00 46.62 3.41
1976 2317 2.050144 ACCAGCAGTTCCTTTCTCTCA 58.950 47.619 0.00 0.00 0.00 3.27
2010 2351 0.034059 ACGACTTGGAGTCTTGCCAG 59.966 55.000 6.53 0.00 42.92 4.85
2060 2401 3.323751 ACCAAATTGGAGCAAAGCATC 57.676 42.857 20.25 0.00 40.96 3.91
2072 2413 3.176867 CACGAACGAACGAAACCAAATTG 59.823 43.478 11.97 0.00 37.03 2.32
2084 2425 2.314122 GTCCTGTAGTCACGAACGAAC 58.686 52.381 0.14 0.00 0.00 3.95
2085 2426 1.069703 CGTCCTGTAGTCACGAACGAA 60.070 52.381 0.14 0.00 35.49 3.85
2093 2434 1.476891 GATTCTGCCGTCCTGTAGTCA 59.523 52.381 0.00 0.00 0.00 3.41
2094 2435 1.751924 AGATTCTGCCGTCCTGTAGTC 59.248 52.381 0.00 0.00 0.00 2.59
2098 2439 0.461961 GCTAGATTCTGCCGTCCTGT 59.538 55.000 0.00 0.00 0.00 4.00
2104 2445 2.603412 CGACAGTAGCTAGATTCTGCCG 60.603 54.545 13.79 11.24 0.00 5.69
2106 2447 2.034053 AGCGACAGTAGCTAGATTCTGC 59.966 50.000 13.79 6.73 44.05 4.26
2122 2464 0.109272 TCTTCATGACGGACAGCGAC 60.109 55.000 0.00 0.00 0.00 5.19
2148 2490 7.109501 TCTGCCAAACATTGTAGCTAGATTTA 58.890 34.615 0.00 0.00 0.00 1.40
2149 2491 5.945784 TCTGCCAAACATTGTAGCTAGATTT 59.054 36.000 0.00 0.00 0.00 2.17
2150 2492 5.500234 TCTGCCAAACATTGTAGCTAGATT 58.500 37.500 0.00 0.00 0.00 2.40
2151 2493 5.102953 TCTGCCAAACATTGTAGCTAGAT 57.897 39.130 0.00 0.00 0.00 1.98
2152 2494 4.551702 TCTGCCAAACATTGTAGCTAGA 57.448 40.909 0.00 0.00 0.00 2.43
2153 2495 4.697352 AGTTCTGCCAAACATTGTAGCTAG 59.303 41.667 0.00 0.00 0.00 3.42
2154 2496 4.651778 AGTTCTGCCAAACATTGTAGCTA 58.348 39.130 0.00 0.00 0.00 3.32
2155 2497 3.490348 AGTTCTGCCAAACATTGTAGCT 58.510 40.909 0.00 0.00 0.00 3.32
2156 2498 3.923017 AGTTCTGCCAAACATTGTAGC 57.077 42.857 0.00 0.00 0.00 3.58
2160 2502 3.503363 TGCTCTAGTTCTGCCAAACATTG 59.497 43.478 1.71 0.00 0.00 2.82
2165 2507 3.988976 AGATGCTCTAGTTCTGCCAAA 57.011 42.857 0.00 0.00 0.00 3.28
2167 2509 3.365472 TGTAGATGCTCTAGTTCTGCCA 58.635 45.455 0.00 0.00 28.01 4.92
2168 2510 3.798548 GCTGTAGATGCTCTAGTTCTGCC 60.799 52.174 0.00 0.00 28.01 4.85
2191 2533 2.564721 GGCCGTTTTGAGCTGCCTT 61.565 57.895 0.00 0.00 39.05 4.35
2192 2534 2.985847 GGCCGTTTTGAGCTGCCT 60.986 61.111 0.00 0.00 39.05 4.75
2198 2540 1.901650 GAGCGTCTGGCCGTTTTGAG 61.902 60.000 0.00 0.00 45.17 3.02
2220 2562 0.237235 TTTTTGACCGATGCGTCTGC 59.763 50.000 4.05 0.00 43.20 4.26
2251 2600 3.047877 GGACAGTCCGGGCGTTTG 61.048 66.667 3.05 0.00 0.00 2.93
2267 2616 0.320421 CTTGATATACGGGGTGCCGG 60.320 60.000 0.00 0.00 37.53 6.13
2273 2622 2.649531 TTTGGGCTTGATATACGGGG 57.350 50.000 0.00 0.00 0.00 5.73
2296 2645 1.069090 GCCGCCTCATATCCGTTCA 59.931 57.895 0.00 0.00 0.00 3.18
2298 2647 2.426023 GGCCGCCTCATATCCGTT 59.574 61.111 0.71 0.00 0.00 4.44
2335 2684 1.344763 GCTAGGCTAATCGGATGTGGT 59.655 52.381 0.00 0.00 0.00 4.16
2365 2714 0.537371 GGATATTTGTGGGGGCGAGG 60.537 60.000 0.00 0.00 0.00 4.63
2384 2734 4.148838 ACCTCTAAGATTCTCCGGATGAG 58.851 47.826 3.57 0.00 42.90 2.90
2387 2737 4.463050 AGACCTCTAAGATTCTCCGGAT 57.537 45.455 3.57 0.00 0.00 4.18
2390 2740 5.934935 GTCTAGACCTCTAAGATTCTCCG 57.065 47.826 12.13 0.00 0.00 4.63
2405 2755 3.444388 ACAGATTGGACTTCGGTCTAGAC 59.556 47.826 14.87 14.87 43.94 2.59
2406 2756 3.698289 ACAGATTGGACTTCGGTCTAGA 58.302 45.455 0.00 0.00 43.94 2.43
2425 2775 1.149288 AGGGAGTGGAGTGGACTAACA 59.851 52.381 0.00 0.00 0.00 2.41
2426 2776 1.939980 AGGGAGTGGAGTGGACTAAC 58.060 55.000 0.00 0.00 0.00 2.34
2437 2787 1.609501 TGGACGGAGAAGGGAGTGG 60.610 63.158 0.00 0.00 0.00 4.00
2443 2793 0.900647 AGTGGAGTGGACGGAGAAGG 60.901 60.000 0.00 0.00 0.00 3.46
2450 2800 0.314302 AACTCGAAGTGGAGTGGACG 59.686 55.000 0.00 0.00 46.21 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.