>input_sequence_78393
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-------------------------------------------------------------------------ATGATCT
CCCCGCGCCCCACTCTCTCCTCC---------GGTTTCTTCTCCCGCTCCGCCTCCTTCTCCCGCCCGGCCTCATTCTCC
CC---------GTCGCCGCCTGCCTCGCCGGCCGCCCAGGCGCCGCCGCCGCTGCTCTCGGCCCCGTTCGCCCGCCCCGC
CACCTTATCCTG------CTCCGCCGTCGCCGCCCCGGG------------ACGCGGCGCCTCCTCCTGCTTGTACGACG
TGCTCGGCCTCGACGCCGGCGCGAGCGACGGGGAGATCAAGGCCGCGTACCGCCGCCTGGCGCGCGCCGTCCACCCGGAC
GTGTCCCCGCACC---------CCGCCGACGACTTCATACGGGTGCACGCCGCCTACAGCACGCTCTCCGACCCCAGCAA
GCGCGCCGACTACGACCGCCGCATGATCATGATCCCCTCCGCCGTCGGCCGCCGCAGCGCCCCGAACCTCGCCCGCTCGC
CGTCGTTCCCCGGGTGCCGTCGCCGCACCTGGGAGACTGACCAGTGCTGGTGA---------------------------
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>chr4B_1_TraesCS4B01G226300
TCCCTAGGGTGCGGTTAGCGCCCACGCGACAGCCGGTGCTCGTGCTCCCCTTCGACTGGCCCGCGTGCACGATCACAACG
AGCTCGGCAGGTCGACCCGAGAGCCTCTTCACGGCGGCGACGTCGAGGTTGAGCACACCGCTGGCCCCGCCAGGGAGGCA
GGTGGACATGAGCGGCAACAATGCAGTGCGGGAGAGAGGAAGGCTGGTCCTAGAGGTGGAGGGAATAGTTCGTCCATTTT
GGTCCTGTCGCGTTGGGTGCAGATGTGTCCCCCAACCGTCCTCTCTCCGGACGCCTATCGTTTCGCTATCCAAACGGACA
AATGTTTGCTTCCGTTTGGGGTCTAGTGTTGTTGTTGGCCTTAAGGTTTTCTCAAACTTCATGTATGATGATG---TACT
CAGATAAGGGTACAGGAAATGAACATGTAAAACTGACAGCTAGTTATGCTTTTCTCAAGTTCCCAACCTTCATATTTCAA
CTTTCTACGAAAACTTAATA---TTAGAACTTGATATTTTTTTAGTACAAACTG--GTGTACAGATGTCGGCCCTTACGT
GACATTGACATGTACATGCAGCCAGCAGCCGGCACTATTTGTGTAC----TATGTCGTTGTCACGATGAATCATGCCTGC
AAACTAAATCGGCACCGTGAACGACTGCTTCAAATGAAACTCGTCACAGTTGCAGACTTGAGATTCGCGCTAACCCAATA
ACGAGGTGTTGATGGCAACAAAAATCAACTAGTCGACCA-----------------------------------------
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-------------------------------------------------------------------------------G
AGGCACATGACACA-----------------------CCCT-CGAGTTGCGCTGCACGGCTGCAGCCAATGGCAGAAGCC
------CAGGGAGAATCGTTGACGAAACAACGCGCAGCCAAACGGACAACCTCAAC---------GCAACGCGAGCCTCG
GCCGGCGTTAACGAATAGCCAAAGCCAATCCCCCTCAAATGCCTCGTCTGATTGGTGATTGCCTCCTCGT---CCGGCGT
TAAATAGC---------------AGCCTCGGCTCCTTTGCGCATCCGAACCGAACCGAGCCTCG----CCACCATGATCT
CCCCGCGCCCCACTCTCTCCTCC---------GGTTTCTTCTCCCGCTCCGCCTCCTTCTCCCGCCCGGCCTCATTCTCC
CC---------GTCGCCGCCTGCCTCGCCGGCCGCCCAGGCGCCGCCGCCGCTGCTCTCGGCCCCGTTCGCCCGCCCCGC
CACCTTATCCTG------CTCCGCCGTCGCCGCCCCGGG------------ACGCGGCGCCTCCTCCTGCTTGTACGACG
TGCTCGGCCTCGACGCCGGCGCGAGCGACGGGGAGATCAAGGCCGCGTACCGCCGCCTGGCGCGCGCCGTCCACCCGGAC
GTGTCCCCGCACC---------CCGCCGACGACTTCATACGGGTGCACGCCGCCTACAGCACGCTCTCCGACCCCAGCAA
GCGCGCCGACTACGACCGCCGCATGATCATGATCCCCTCCGCCGTCGGCCGCCGCAGCGCCCCGAACCTCGCCCGCTCGC
CGTCGTTCCCCGGGTGCCGTCGCCGCACCTGGGAGACTGACCAGTGCTGGTGATCGACTGCCCACCATCCGCCCCGACTA
ACGCGTCACGAAGGTCGCTGACGTTTTCGGCCGGAGTGGCCTCCGGCTGGTTTCCCGGGCGGTTAGAAATGCAAAGGTTA
CCGCGGCCACTAGGCTCACTTGCAGTGGTGGCCGGGTCACTACGCTTCTAG---AATAAACT---GTAGTACGTACTCTG
TTGTTAGCGCAACGTACAATTAGTCTCACGCTTCGCTCTGGCTTGTA--------TATAGAAAAACAAAAGATCAATGTA
TGG---CGTGTGTGACGTCCGTCTATTTTGAAGTCTATC-----ATGCATGTTCGGCTTGATGTGGTGATCTGACAGTAG
GATTTGTTAAATCATAATGAGCTGGACTCCTGGAGATGCTGAGGGCCGGATGGTGATCTTGGCGTACTTTTCTTCTCGCG
TGCCTGGTGGCTGGTGCGGACCTGGGGGGCTGCGGTCTGTGGAGTCTGAATGCTTCAAAGCACTCCCGGTTTTCTTTGAG
AGAAAGGAACTGCTGGTGCTGAATCATCCACTGGCAAGACTCCAAGTCGTCGCAAGAGCCGAGAGGGACTTGAATGAATA
GATGCTTTGCTCCAATTTGGTTTCGTTCGTTCGTGACTACAGGACGGCAGAATC-TAGCTACTGTCGCTGTCCGTCATGA
AGATGTACCTAAATCTAGCTACAATGTTTGGCAGAACTAGAGCATCTACAGCAAGGCAGCTCAAAACGGCCAGACGCTCG
GGCAGACGCATCGGT-------CAAAAAATATCGACCCACAAACGCCCGGACTGTCCGGCACCCCGTATATCAAGCCCAA
ATCTTGAACGGATATGAGGCGGCCCGAGCGCTCGGGTGAGTCCACCACATCCGATTAGCCTAGCCTGGCCCACCCTCGCC
CCC-ACAAATATCCTCATCCGGAGAATCTTAGAGGTCTAGACCGAAGTCCAATCTGTTAGTCCACTCCACTCCCTTCTCC
GTCCACTCCACTTCGAGTTCCCTTCGATTCTGTTCGATGGCCAG
>chr4A_358
GCCTTACGGT----------------------------------------------------------------------
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----------------------------------------------TTTTGTCAAACTTGATGTATGATGACATACTCCT
CAGATAAGGGTTACGGGAACGAACGGGTAAAACTGACAGCGACTTATGCTTTTCTCAAGTTCCCAACATTGATATTTCAA
CTTTCTACAGAAACTTAATACTATTACAACTTGACATTTCTTTAATAGTACAAAGTGTGTACAGATGTCGGCCCTTACGT
TACG-TGACATGTACCTGCAGCCAGCAGCCGGAACTATTTGTGTAGTACGTATGTCCCTGTCACTATGAATCATGCCTGC
AAACTAAATCGGCACCGTGAACGACTGCTTCAAACGAAACTCGTCACAGTTGCAGACTTGAGATTCGCGTTAACCCAATC
ACGAGGTGTTGATGGCAACAAAAATCAACTCGTCGGCCA-----------------------------------------
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-------------------------------------------------------------------------------G
AGGCACATGACCGCATCCCGCCAAATCCGAAATAAGCCCCT-CGAGTTGCGCTGCGGC----CAGCCAATGGGAGCAGCC
------CAGGGAGAATCGTTGACGAAACAACGCGCAGCCAAAGGG---------AC---------GCAACGCGAGCCACG
CCCGGCGTTAACGAATAGCCAAAGCCAACCCCCCTCAAATGCCTCGTCTGATTGGCGATTGCCTCCTCGTCCGCCAGCGT
TAAAAAGC---------------AGCCTCGGCTCCTCCGCGCACC-----CGAACCGAGCCTCG----CCACCATGATCT
CCCCGCGCCCCACTCTCTCCTCC---------GGCTTCTTCTCCCGCTCCGCCTCCTTCTCCCGCCCCGGCTCATTCTCC
CC---------CTCGCCGCCCGCCTCGCCGGCCGCGCAGCCTCCGCCGCGGCTGCTCTCGGCCCCGCTCGCGCGCCAGGC
CACCTTCTCCTGCTCCGCCTCCGCCGTCGCCGCGCCGGG------------CCGCGGCGCCTCCTCCTGCTTCTACGACG
TGCTCGGCCTGGACGCCGGCGCGAGCGACGGGGAGATCAAGGCCGCGTACCGCCGCCTGGCGCGCGCCGTCCACCCGGAC
GTGTCCCCGCACC---------CCGCCGACGACTTCATACGCGTGCACGCCGCCTACAGCACGCTCTCCGACCCCAGCAA
GCGCGCCGACTACGACCGCCGCATGATCATGATCCCCTCCGCCGTCGCCCGCCGCAGCGCCCCGAACCTCGCCCGCTCGC
CGTCGTTCCCCGGGTGCCGCCGCCGCACCTGGGAGACCGACCAGTGCTGGTGATCGACCGCCCGCCGTCCGCCCCGACCA
GCGCTCACGC-AGGTCCCTGACGCTTTCGGCCGGAGTGGCCTCCGGCTGGTTCCCCGGGCGGTTAGAAATGCAAAGGTTA
CCGCGGCCACTAGGCTCACTTGCAGTGGTGGCCGGGTCACTACGCTTCTAGTAGAATAAACAGT--------GTACTCTG
TTATTAGCACAACGTACAATTAGTCTCACACTTCGCTGTGGCTTGTATATGTATATATAGAAAAACAAAAGATGGATGTA
TGGCGTCGTGTGCGACGTCCGTCTATTTTGAAGTCTACTGTATTATGCATGTTCGGCTTGACGTGGTGATCTGACAGTAG
GATTTGTTAAATCGTAATGAGCTGGACTCCTGGAGATGCTGAGGGCCGGATGGTGATCTTGGCTTACTTTTCTTCTCGCG
TGCGTGGTGGCTGCTGCGGACCTGGGGGGCTGCGGCTTGTGGAGTCTGAATGCTTCAAAGCGCTCCCTGTTTTCTTCGAG
AGAAAGGAACTGCTGGTGC-GAATCATCCAGTGGCAAGACTCCAAGTCGTCGCAAGAGCCGAGAGGGACTTGAATGAATA
TATGCTTTGCTCTAATTTGGTTTCCATCGTTCGCCACTCCAGGAGGACAGAATCTTAGCTACTATCGCTGTCCGTCATGA
AAATTTACCA--------CTAAAATGCTCTGCAGAACTAGAGCATCTACAGCCGGGCAGATCAATCCGGCCAAACGCTCG
GATAGACGGATCATTCAAAAAACAAAAAATATCGACCCATAAACACCCGGACTGTTCGGCATCCCTCATATCAAGCCCAA
ATCTAGGACGGATATGAGGCGGCCGGAGCGCTCGGGTGAGTCCGCCACATCGAACGAGCCTAGACTGGCCCACACTCGCC
CCCCACAAATATCTTCTTCTCAAGAATCTTAAAGCCCTAGACCGAAGTCCAATCCATTAGTCCACTTCACTCTCTTCTCT
GTCCGCTCCACTTCGAGTCCCCTCCGATTCCGATCGATGGCC--
>chr4B_600
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---------------------------------------------------ATGTCGATTTCAGGATGAATCATGCCTGC
AAATTG-ATCGGTAATGTGAATGACTGTTTCAAATGAAAGTCGTCACAATTGCAGTCTTGAGATTCGTGCTAACCCAATA
ACAAGGTGTTAATGGCAACAAAAATCAACTCGTTGGCCA-----------------------------------------
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-------------------------------------------------------------------------------G
AGGCACATGACCGCATTCCGCCAAATGA--------CCCCC-CGAGTTGCGCTGCAGC----CAACCAATGGGAGCAACC
------CAGGGAGAATCATTGACGAAACAATGTGCAGCCAAAGGG---------ATAACCACAACAG---GCGAGCCTCA
T--GGCGTTAATGAATAGCCAA------TCCCCCTCAAATGCCTCATCTGATTAGTGATTGCCTCCTCGT---CTGATGT
TAAAAGCTGCTGGCACACCTTAGAGCCTGGGCTCCTCTGCTCACC-----TTAACTCAGCCCTCACCACCACCATGATCT
CCCCGTGCCCCACTCTCTCCTTCCACTCCTCTGGCTTCTTCTCCCGCTCCGCCTCCTTCTCCCGTCCGGCCTCATTCTCC
CCGAGGCCCATGTCGCCGCCTGCCTTGCCGGCCGGCCAGGCACCGCCGCCGGTGCTCTCGGCCCAATTCGCCCACCCCGC
CACCTTATCCCGCTCCGCCTTCTTCTCCACATCTGACGTCGCTGTGCTGGTCCGCGACGCCTCCTCCTGCTTCTACGAGG
TGCTAGGCCTGGACGCCGGTGCGAGCGACGGGGAGATCAAGGCCGCGTACCACTGTCTAGCTCGCGCTGTCCACCCGAAC
GTGTCCCTGCACCCTGCCACATCCGCCGACGACTTTATACGGGTGCACGCCGCCTATAGCATGCTCTCCAACCCCAGCAA
GCGCAACGACTATGACCGCCGCATGATCATGATCCCCTCTGCCGTCGGCTGCCGCAGCGGCCCGAACCTCGCCCGCTCGC
CATCGTTCACCGGGTGCCGCCGCCGCACCTGGGAGACCGACCAGTGCTGGTGATAAACCGCCTGTCGTCCGCCCCGAGTA
ACGCGTCA------------------------------------------------------------------------
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>chr4D_621
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------------------------------------------------------------------------ATGCCTGC
AAACTAAATCGGCACCGTGAACGACTGCTTCAAATGAAACTCGTCACAGTTGCAGACTTGAGATTCGCGCTAACCCAATA
ACGAGGTGTTGATGCCAACAAAAATCAACTACTACCACTCTCTCAGTTTACAGGGCATGCGCGTATTCCTAGGTCGTTAA
TTTGACCAATTTAATACAAGTCATATATTACAAAAAATATACAAACATAAACTACGGAGTTTCTACTTTCAAAAGATATA
ATTTTTATGTTATATAGTTTATATTAGAGTGATAAAATTAACAACTTATGTATACACACACCACTTGTAAACTGAAACGG
AGGCATATGACCGCATTCCGCCAAATGA--------CCCCCTCGAGTTGCGCTGCAGC----CAA----TGGGAGCAGCC
CAGGGACAGGGAGAATCGTTGACGAAACAACGCGCAGCCAAAGGG---------ACAACCACAACGCAACGCGAGCCTCG
CCCGGCGTTAACGAATAGCCAA------TCCCCCTCAAATGCCTCGTCTGATTGGTGATTGCCTCCTCGT---CCGGCGT
TAAAAAGC---------------AGCCTCGGCTCCTCCGCGCATC-----CGAACCGAGCCTCG----CCACCATGATCT
CCCCGCGCCCCACTCTCTCCTCC---------GGCTTCTTCTCCCGCTCCGCCTCCTTCTCCCGCCCCGGCTCATTCTCC
CC---------CTCGCCGCCTGCCTCGCCGGCCGCGCAGGCGCCGCCGCGGCTGCTCTCGGCCCCGTTCGCGCGCCACGC
CACCTTCTCCCGCTCCGCCTCCGCCGTCGCCGCGCCGGG------------CCGCGGCGCCTCCTCCTGCTTGTACGACG
TGCTCGGCCTCGACGCCGGCGCGAGCGACGGGGAGATCAAGGCCGCGTACCGCCGCCTGGCGCGCGCCGTCCACCCGGAC
GTGTCCCCGCACCCCGCCGCGTCCGCCGACGACTTCATACGGGTGCACGCCGCCTACAGCACGCTCTCCGACCCCAGCAA
GCGCGCCGACTACGACCGCCGCATGATCATGATCCCCTCCGCCGTCGGCCGCCGCAGCGCCCCCAACCTCGCCCGCTCGC
CGTCGTTCCCCGGGTGCTGCCGCCGCACCTGGGAGACCGACCAGTGCTGGTGATCGAC----------------------
----------------------GTTTTCGGCCGGAGTGGCCTCCGGCTGGTTCCCCGGGCGGTTAGAAATGCAAAGGTTA
CCGCGGCCACTAGGCTCACTTGCAGTGGTGGCCGGGTCACTGCGCTTCTAG---AATAAACAGTAGTAGTACGTACTCTG
TTATTAGCGCAACGTACAATTAGTCTCACACTTCGCTGTGGCTTGTATAG-----------AAAACAAAAGATCGATGTA
TGGCGTCGTGTGTGACGTCCGTCTATTTTGAAGTTTATC-----ATGCATGTTCGGCTTGATGTGGTGATCTGACAGTAG
GATTTGTTAAATCATAATGAGCTGGACTCCTGGCGATGCTGAGAACCGGATGGTGATCTTGGTGTACTTTTCTTCTTGCG
TGCGTGGTGGCTGCTGCGGACCTGGGGGGCTGCGGCTTGTGGAGTCTGAATACTTCAAAGCACTCCCGGTTTTCTTCGAG
AGAAAGGAACTGATGGTGCTGAATCATCCAGTGGCAAGACTCCAAGTCGTTGCAAGAGCCGAAAGGGACGTGAATGAATA
TACG-TTTGCTCTAATTTGGTTTCCCTCGTTCGCCACTCCAGGAGGACAGAAT---------------------------
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>SNPs
S--S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------S-----------SS----S--
-----------SSS--S--S----SS--------------S-S------------------------S--S---------
--------SS----------------S-------S----S----S--SS-SSSS--------------------------
S--SS----------S----------------S------------S-----------S----------------------
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-----------------------------------S--------------------------------------------
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-----------SSS------------------------------------------SSSSSS----------S--S----
------------------------------------------S--SSSSSSSSS--------------------------
S-------------------------------------------------------------------------------
----S-------------------------------S--------SSSSS------------------------------
----------------------------------S---------------------------------------------
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---------------------------------S-----------------S----------------------------
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-------------------S-----------------S--------------------S----S--S-------------
--------SSS-----S-----------------------------------S---------------------------
-------------------------------------------------------------S------------------
--S--------------------------S-------S------------------------------------S-----
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---S---------S---------------------SS---------------------------------------S---
------------------------------S-------------------------------------------------
S-----------S-----------SS-------SS---S-----S-S----------------S----------------
-S--S----SSSSSSSSS---S----S-SS----------------------SS-----S----SS------S-------
-SS-----S---SS-------------------------S----S----------S-----S---SS-------------
----S-S-----------------S------------------S-------SS-SS-------S---------S------
-------------S--S--SSS---------S--SS------------------SS----------S-----S------S
----S-------------S----S------S-S---------SS
>forward_343
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---GTTTGCTTCCGTTTGGGGTC---------------------------------------------------------
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>reverse_2351
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------------------------------CTGGCAAGACTCCAAGTCGT------------------------------
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