AutoCloner

Multiple sequence alignment - TraesCS4B01G225000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G225000	chr4B	100.000	2525	0	0	1	2525	471339397	471336873	0.000000e+00	4663.0
1	TraesCS4B01G225000	chr4B	80.328	183	13	9	1762	1933	580986569	580986399	1.590000e-22	117.0
2	TraesCS4B01G225000	chr4B	82.979	94	7	5	1746	1830	580771894	580771987	2.690000e-10	76.8
3	TraesCS4B01G225000	chr4A	92.834	935	39	18	727	1643	66148542	66147618	0.000000e+00	1330.0
4	TraesCS4B01G225000	chr4A	93.760	609	26	5	1926	2525	66147410	66146805	0.000000e+00	904.0
5	TraesCS4B01G225000	chr4A	83.073	768	74	32	1	744	66149307	66148572	0.000000e+00	647.0
6	TraesCS4B01G225000	chr4A	88.889	81	8	1	1849	1928	513342733	513342813	5.750000e-17	99.0
7	TraesCS4B01G225000	chr4D	90.456	943	40	20	799	1722	384271182	384270271	0.000000e+00	1197.0
8	TraesCS4B01G225000	chr4D	95.440	614	17	3	1912	2525	384269884	384269282	0.000000e+00	968.0
9	TraesCS4B01G225000	chr4D	91.170	487	41	2	3	487	384273023	384272537	0.000000e+00	660.0
10	TraesCS4B01G225000	chr4D	88.372	86	5	4	727	812	384272269	384272189	5.750000e-17	99.0
11	TraesCS4B01G225000	chr5B	94.659	337	16	2	1067	1403	535715432	535715098	2.880000e-144	521.0
12	TraesCS4B01G225000	chr5B	88.525	61	5	2	1732	1790	108525661	108525721	3.480000e-09	73.1
13	TraesCS4B01G225000	chr6B	95.639	321	13	1	1090	1409	679983415	679983095	4.820000e-142	514.0
14	TraesCS4B01G225000	chr6B	90.909	88	6	2	1847	1933	519784508	519784422	1.590000e-22	117.0
15	TraesCS4B01G225000	chr6B	78.626	131	12	4	1800	1927	569819442	569819559	3.480000e-09	73.1
16	TraesCS4B01G225000	chr5D	95.584	317	14	0	1087	1403	405334713	405334397	2.240000e-140	508.0
17	TraesCS4B01G225000	chr5D	93.787	338	17	4	1068	1403	440375463	440375128	2.900000e-139	505.0
18	TraesCS4B01G225000	chr5D	93.994	333	17	3	1071	1402	331842160	331841830	3.750000e-138	501.0
19	TraesCS4B01G225000	chr5D	93.393	333	20	2	1072	1403	332459489	332459158	2.260000e-135	492.0
20	TraesCS4B01G225000	chr5D	79.630	162	18	13	335	487	489250956	489251111	4.440000e-18	102.0
21	TraesCS4B01G225000	chr5D	77.436	195	21	13	1744	1927	21975375	21975557	7.440000e-16	95.3
22	TraesCS4B01G225000	chr7B	94.012	334	17	3	1071	1403	589740543	589740212	1.040000e-138	503.0
23	TraesCS4B01G225000	chr7A	90.588	85	7	1	1844	1927	53861833	53861917	7.380000e-21	111.0
24	TraesCS4B01G225000	chr6D	92.405	79	5	1	1849	1926	376085230	376085152	7.380000e-21	111.0
25	TraesCS4B01G225000	chr1A	89.773	88	8	1	1847	1933	504525906	504525819	7.380000e-21	111.0
26	TraesCS4B01G225000	chr1A	88.235	85	9	1	1850	1933	504458191	504458107	1.600000e-17	100.0
27	TraesCS4B01G225000	chr2B	87.500	88	8	3	1847	1932	43189852	43189766	5.750000e-17	99.0
28	TraesCS4B01G225000	chr3D	78.771	179	13	13	1741	1907	482502813	482502648	2.070000e-16	97.1
29	TraesCS4B01G225000	chr3D	76.000	200	22	16	1740	1927	43595857	43596042	2.080000e-11	80.5
30	TraesCS4B01G225000	chr3A	87.805	82	9	1	1847	1927	60834328	60834409	7.440000e-16	95.3
31	TraesCS4B01G225000	chr3A	87.805	82	9	1	1847	1927	60834807	60834888	7.440000e-16	95.3
32	TraesCS4B01G225000	chr3A	75.758	198	34	11	1741	1933	712848606	712848794	1.240000e-13	87.9
33	TraesCS4B01G225000	chr3A	75.758	198	34	11	1741	1933	712855712	712855900	1.240000e-13	87.9
34	TraesCS4B01G225000	chr2D	76.329	207	23	13	1737	1930	250618604	250618411	1.240000e-13	87.9
35	TraesCS4B01G225000	chr2A	81.982	111	7	8	1741	1839	10728423	10728532	5.790000e-12	82.4
36	TraesCS4B01G225000	chr5A	79.817	109	9	4	1800	1907	389164078	389163982	1.620000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G225000	chr4B	471336873	471339397	2524	True	4663.000000	4663	100.0000	1	2525	1	chr4B.!!$R1	2524
1	TraesCS4B01G225000	chr4A	66146805	66149307	2502	True	960.333333	1330	89.8890	1	2525	3	chr4A.!!$R1	2524
2	TraesCS4B01G225000	chr4D	384269282	384273023	3741	True	731.000000	1197	91.3595	3	2525	4	chr4D.!!$R1	2522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
903	2034	0.249073	CACCTCGATCCAACGGCTAG	60.249	60.0	0.0	0.0	0.0	3.42	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2314	3707	2.260869	CGGTGGTTCAGTTGCTGGG	61.261	63.158	0.0	0.0	31.51	4.45	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	0.451783	GCCTTGCCTTATTCGTGTGG	59.548	55.000	0.00	0.00	0.00	4.17
70	74	2.976185	TCACAACCCTAGTCAACCATCA	59.024	45.455	0.00	0.00	0.00	3.07
92	96	4.862018	CACAACACCAAACATTCTCGTTTT	59.138	37.500	0.00	0.00	36.98	2.43
110	114	1.267574	TTGTGGGCCAGGCACAAAAA	61.268	50.000	21.20	13.82	46.28	1.94
121	125	2.967887	AGGCACAAAAATTCAGGAGCTT	59.032	40.909	0.00	0.00	0.00	3.74
132	136	2.515854	TCAGGAGCTTCTAGTTGACGT	58.484	47.619	0.00	0.00	0.00	4.34
196	207	3.338250	GGTCTCCACCATGCCCCA	61.338	66.667	0.00	0.00	43.17	4.96
209	221	2.611225	TGCCCCACATGTTGTTTTTC	57.389	45.000	0.00	0.00	0.00	2.29
215	227	3.796178	CCCACATGTTGTTTTTCTGTTCG	59.204	43.478	0.00	0.00	0.00	3.95
270	284	9.823647	TTTAGGAGCTAGATATTTCAAGAACTG	57.176	33.333	0.00	0.00	0.00	3.16
273	287	8.982723	AGGAGCTAGATATTTCAAGAACTGTTA	58.017	33.333	0.00	0.00	0.00	2.41
274	288	9.255304	GGAGCTAGATATTTCAAGAACTGTTAG	57.745	37.037	0.00	0.00	0.00	2.34
517	563	8.474025	TCAGTGTGTATTTGGAAAAATTTCAGT	58.526	29.630	8.06	0.00	38.92	3.41
529	575	7.816995	TGGAAAAATTTCAGTGTATATTGCACC	59.183	33.333	8.06	0.00	38.92	5.01
539	585	8.749354	TCAGTGTATATTGCACCACCTATATAG	58.251	37.037	2.46	2.46	37.56	1.31
548	610	7.859325	TGCACCACCTATATAGAAAAGAAAC	57.141	36.000	11.53	0.00	0.00	2.78
549	611	7.630082	TGCACCACCTATATAGAAAAGAAACT	58.370	34.615	11.53	0.00	0.00	2.66
550	612	7.769044	TGCACCACCTATATAGAAAAGAAACTC	59.231	37.037	11.53	0.00	0.00	3.01
551	613	7.226918	GCACCACCTATATAGAAAAGAAACTCC	59.773	40.741	11.53	0.00	0.00	3.85
552	614	8.487028	CACCACCTATATAGAAAAGAAACTCCT	58.513	37.037	11.53	0.00	0.00	3.69
554	616	8.487028	CCACCTATATAGAAAAGAAACTCCTGT	58.513	37.037	11.53	0.00	0.00	4.00
555	617	9.892130	CACCTATATAGAAAAGAAACTCCTGTT	57.108	33.333	11.53	0.00	38.16	3.16
827	1957	4.570505	CCTTCTTCCTGATTTCCATTCCCA	60.571	45.833	0.00	0.00	0.00	4.37
903	2034	0.249073	CACCTCGATCCAACGGCTAG	60.249	60.000	0.00	0.00	0.00	3.42
949	2080	2.608970	ATCGCTCCCCAATCCAACGG	62.609	60.000	0.00	0.00	0.00	4.44
983	2114	3.051727	GTCCCCCAGCTCTATATATCCCT	60.052	52.174	0.00	0.00	0.00	4.20
988	2119	2.363680	CAGCTCTATATATCCCTGCCCG	59.636	54.545	0.00	0.00	0.00	6.13
994	2125	1.532604	TATATCCCTGCCCGCTCGTG	61.533	60.000	0.00	0.00	0.00	4.35
1004	2135	2.126071	CGCTCGTGTCGTCCCAAT	60.126	61.111	0.00	0.00	0.00	3.16
1014	2145	2.025416	TGTCGTCCCAATCCATCCAATT	60.025	45.455	0.00	0.00	0.00	2.32
1015	2146	3.023832	GTCGTCCCAATCCATCCAATTT	58.976	45.455	0.00	0.00	0.00	1.82
1018	2149	3.067180	CGTCCCAATCCATCCAATTTCAG	59.933	47.826	0.00	0.00	0.00	3.02
1021	2152	2.223876	CCAATCCATCCAATTTCAGGCG	60.224	50.000	0.00	0.00	0.00	5.52
1085	2216	1.767759	AAGAGAGAGAGAGAGCAGCC	58.232	55.000	0.00	0.00	0.00	4.85
1349	2480	2.358247	GTCACCGCCATGGACGTT	60.358	61.111	18.40	4.14	42.00	3.99
1442	2577	1.531149	CTTGTTTACGGAGTGCCTGTG	59.469	52.381	0.00	0.00	45.73	3.66
1488	2630	5.049749	CGAATGTTGTGTTCCTGATGTAACA	60.050	40.000	0.00	0.00	33.35	2.41
1624	2770	5.329035	TCTTTGGATAATTGCTTTGCTCC	57.671	39.130	0.00	0.00	0.00	4.70
1654	2800	2.203523	TGCAGTGGCATGCCAGTT	60.204	55.556	38.91	27.43	46.84	3.16
1655	2801	2.270257	TGCAGTGGCATGCCAGTTC	61.270	57.895	38.91	34.46	46.84	3.01
1724	3014	3.254411	TGATGGCGCTTCAACATGTTTTA	59.746	39.130	8.77	0.00	0.00	1.52
1747	3037	6.840780	AGCTGTTTTTGAATTGCTATAGGT	57.159	33.333	1.04	0.00	0.00	3.08
1758	3049	8.437360	TGAATTGCTATAGGTCTTGTACAATG	57.563	34.615	9.13	3.87	0.00	2.82
1768	3059	4.003648	GTCTTGTACAATGCTAGGTGCTT	58.996	43.478	9.13	0.00	43.37	3.91
1777	3068	7.938140	ACAATGCTAGGTGCTTAGAAAAATA	57.062	32.000	0.00	0.00	43.37	1.40
1783	3074	7.551262	TGCTAGGTGCTTAGAAAAATAAATCGA	59.449	33.333	0.00	0.00	43.37	3.59
1784	3075	8.560374	GCTAGGTGCTTAGAAAAATAAATCGAT	58.440	33.333	0.00	0.00	38.95	3.59
1810	3101	8.707796	TTTTTCTAAGACACTTCTAGAGGAGA	57.292	34.615	9.14	0.00	0.00	3.71
1811	3102	7.931578	TTTCTAAGACACTTCTAGAGGAGAG	57.068	40.000	9.14	0.00	34.93	3.20
1816	3115	4.079787	AGACACTTCTAGAGGAGAGATGCT	60.080	45.833	9.14	0.00	34.93	3.79
1844	3143	9.680315	AATTAAGCGTCTATCTTGTACTACATC	57.320	33.333	0.00	0.00	0.00	3.06
1845	3144	6.945938	AAGCGTCTATCTTGTACTACATCT	57.054	37.500	0.00	0.00	0.00	2.90
1861	3160	7.611213	ACTACATCTTGTACAAATAAGCACC	57.389	36.000	10.03	0.00	0.00	5.01
1863	3162	4.394920	ACATCTTGTACAAATAAGCACCGG	59.605	41.667	10.03	0.00	0.00	5.28
1866	3165	3.128852	TGTACAAATAAGCACCGGTGT	57.871	42.857	33.92	19.11	0.00	4.16
1903	3202	6.659242	TGATTTATTTCTCCAAACACCTCTCC	59.341	38.462	0.00	0.00	0.00	3.71
1904	3203	5.843019	TTATTTCTCCAAACACCTCTCCT	57.157	39.130	0.00	0.00	0.00	3.69
1905	3204	6.945636	TTATTTCTCCAAACACCTCTCCTA	57.054	37.500	0.00	0.00	0.00	2.94
1906	3205	5.843019	ATTTCTCCAAACACCTCTCCTAA	57.157	39.130	0.00	0.00	0.00	2.69
1910	3294	7.510675	TTCTCCAAACACCTCTCCTAAATAT	57.489	36.000	0.00	0.00	0.00	1.28
1921	3305	7.933577	CACCTCTCCTAAATATCTTGCATTGTA	59.066	37.037	0.00	0.00	0.00	2.41
1940	3324	5.546621	TGTACAAGGTCTAAGCTGTCTTT	57.453	39.130	0.00	0.00	33.85	2.52
1993	3377	5.248870	AGAAAACACAAGATGGACAACAC	57.751	39.130	0.00	0.00	0.00	3.32
1995	3379	4.370364	AAACACAAGATGGACAACACAC	57.630	40.909	0.00	0.00	0.00	3.82
2018	3402	6.860023	CACATCTTTCTTCAGATTTTGACACC	59.140	38.462	0.00	0.00	34.94	4.16
2125	3511	5.918576	CGACATACACAGACTACTTCACAAA	59.081	40.000	0.00	0.00	0.00	2.83
2260	3647	5.073311	AGATAACGACAGCTAACACACAT	57.927	39.130	0.00	0.00	0.00	3.21
2377	3770	0.818296	AAGCAGATTCGCCGAGTAGT	59.182	50.000	0.00	0.00	0.00	2.73
2407	3800	0.179009	CCCATGACCCGCATTCATCT	60.179	55.000	0.00	0.00	34.15	2.90
2431	3824	2.217112	CGATCCATTCGCCGAAGAC	58.783	57.895	5.52	0.00	41.69	3.01
2510	3903	0.989890	CGAAGAACCGACTAAAGCCG	59.010	55.000	0.00	0.00	0.00	5.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	0.616395	TAGATCTGGCCCCACACGAA	60.616	55.000	5.18	0.00	0.00	3.85
28	29	4.284490	TGAGTATTGATGTAGATCTGGCCC	59.716	45.833	5.18	0.00	0.00	5.80
70	74	4.712122	AAACGAGAATGTTTGGTGTTGT	57.288	36.364	0.00	0.00	40.40	3.32
92	96	1.053264	ATTTTTGTGCCTGGCCCACA	61.053	50.000	17.53	12.14	41.11	4.17
110	114	3.511934	ACGTCAACTAGAAGCTCCTGAAT	59.488	43.478	0.00	0.00	0.00	2.57
121	125	1.334689	CGCACACAGACGTCAACTAGA	60.335	52.381	19.50	0.00	0.00	2.43
132	136	0.317160	CCCTAGTTGACGCACACAGA	59.683	55.000	0.00	0.00	0.00	3.41
196	207	4.712122	ACCGAACAGAAAAACAACATGT	57.288	36.364	0.00	0.00	0.00	3.21
209	221	6.937886	AAAAACAACTACAAAACCGAACAG	57.062	33.333	0.00	0.00	0.00	3.16
489	513	9.658799	TGAAATTTTTCCAAATACACACTGAAA	57.341	25.926	0.00	0.00	36.36	2.69
511	557	4.917385	AGGTGGTGCAATATACACTGAAA	58.083	39.130	8.29	0.00	38.14	2.69
529	575	9.892130	AACAGGAGTTTCTTTTCTATATAGGTG	57.108	33.333	9.89	0.00	33.11	4.00
596	658	9.871238	GAGTTTTCTTCCTTTTTAGGTTTCTTT	57.129	29.630	0.00	0.00	0.00	2.52
597	659	9.031537	TGAGTTTTCTTCCTTTTTAGGTTTCTT	57.968	29.630	0.00	0.00	0.00	2.52
598	660	8.589701	TGAGTTTTCTTCCTTTTTAGGTTTCT	57.410	30.769	0.00	0.00	0.00	2.52
599	661	9.084164	GTTGAGTTTTCTTCCTTTTTAGGTTTC	57.916	33.333	0.00	0.00	0.00	2.78
600	662	8.590204	TGTTGAGTTTTCTTCCTTTTTAGGTTT	58.410	29.630	0.00	0.00	0.00	3.27
601	663	8.129496	TGTTGAGTTTTCTTCCTTTTTAGGTT	57.871	30.769	0.00	0.00	0.00	3.50
602	664	7.712204	TGTTGAGTTTTCTTCCTTTTTAGGT	57.288	32.000	0.00	0.00	0.00	3.08
603	665	8.633561	AGATGTTGAGTTTTCTTCCTTTTTAGG	58.366	33.333	0.00	0.00	0.00	2.69
740	806	2.978010	GGCCAATCCCGTATGCCG	60.978	66.667	0.00	0.00	31.55	5.69
957	2088	0.263765	TATAGAGCTGGGGGACGGTT	59.736	55.000	0.00	0.00	0.00	4.44
961	2092	3.051727	AGGGATATATAGAGCTGGGGGAC	60.052	52.174	0.00	0.00	0.00	4.46
965	2096	2.703007	GGCAGGGATATATAGAGCTGGG	59.297	54.545	0.00	0.00	0.00	4.45
988	2119	1.810030	GGATTGGGACGACACGAGC	60.810	63.158	0.00	0.00	0.00	5.03
994	2125	2.348411	ATTGGATGGATTGGGACGAC	57.652	50.000	0.00	0.00	0.00	4.34
997	2128	3.385755	CCTGAAATTGGATGGATTGGGAC	59.614	47.826	0.00	0.00	0.00	4.46
998	2129	3.645434	CCTGAAATTGGATGGATTGGGA	58.355	45.455	0.00	0.00	0.00	4.37
1004	2135	1.004161	TGTCGCCTGAAATTGGATGGA	59.996	47.619	0.00	0.00	0.00	3.41
1014	2145	4.499019	GGATTTTGTTTTCTGTCGCCTGAA	60.499	41.667	0.00	0.00	0.00	3.02
1015	2146	3.004315	GGATTTTGTTTTCTGTCGCCTGA	59.996	43.478	0.00	0.00	0.00	3.86
1018	2149	2.609491	GGGGATTTTGTTTTCTGTCGCC	60.609	50.000	0.00	0.00	0.00	5.54
1021	2152	5.700832	GGATTTGGGGATTTTGTTTTCTGTC	59.299	40.000	0.00	0.00	0.00	3.51
1442	2577	2.568090	CAAACACCGCCAGGATGC	59.432	61.111	0.00	0.00	41.02	3.91
1450	2585	0.385473	CATTCGACACCAAACACCGC	60.385	55.000	0.00	0.00	0.00	5.68
1451	2586	0.941542	ACATTCGACACCAAACACCG	59.058	50.000	0.00	0.00	0.00	4.94
1537	2680	3.769300	GGATTAAAAGGGGCACAATCACT	59.231	43.478	0.00	0.00	0.00	3.41
1724	3014	6.660949	AGACCTATAGCAATTCAAAAACAGCT	59.339	34.615	0.00	0.00	33.75	4.24
1758	3049	7.916552	TCGATTTATTTTTCTAAGCACCTAGC	58.083	34.615	0.00	0.00	46.19	3.42
1786	3077	8.164733	TCTCTCCTCTAGAAGTGTCTTAGAAAA	58.835	37.037	0.00	0.00	35.12	2.29
1794	3085	4.207165	AGCATCTCTCCTCTAGAAGTGTC	58.793	47.826	0.00	0.00	32.46	3.67
1834	3133	9.146984	GTGCTTATTTGTACAAGATGTAGTACA	57.853	33.333	8.56	5.24	46.24	2.90
1835	3134	8.601476	GGTGCTTATTTGTACAAGATGTAGTAC	58.399	37.037	8.56	11.53	40.68	2.73
1836	3135	7.490079	CGGTGCTTATTTGTACAAGATGTAGTA	59.510	37.037	8.56	1.08	32.84	1.82
1837	3136	6.312918	CGGTGCTTATTTGTACAAGATGTAGT	59.687	38.462	8.56	0.00	32.84	2.73
1838	3137	6.238103	CCGGTGCTTATTTGTACAAGATGTAG	60.238	42.308	8.56	4.97	32.84	2.74
1839	3138	5.583061	CCGGTGCTTATTTGTACAAGATGTA	59.417	40.000	8.56	1.07	0.00	2.29
1840	3139	4.394920	CCGGTGCTTATTTGTACAAGATGT	59.605	41.667	8.56	0.00	0.00	3.06
1841	3140	4.394920	ACCGGTGCTTATTTGTACAAGATG	59.605	41.667	6.12	5.02	0.00	2.90
1842	3141	4.394920	CACCGGTGCTTATTTGTACAAGAT	59.605	41.667	24.02	8.17	0.00	2.40
1843	3142	3.749088	CACCGGTGCTTATTTGTACAAGA	59.251	43.478	24.02	0.90	0.00	3.02
1844	3143	3.500680	ACACCGGTGCTTATTTGTACAAG	59.499	43.478	34.26	5.11	0.00	3.16
1845	3144	3.478509	ACACCGGTGCTTATTTGTACAA	58.521	40.909	34.26	3.59	0.00	2.41
1861	3160	9.471084	AAATAAATCAGGTTTTCTTAAACACCG	57.529	29.630	0.00	0.00	44.37	4.94
1890	3189	6.038714	GCAAGATATTTAGGAGAGGTGTTTGG	59.961	42.308	0.00	0.00	0.00	3.28
1894	3193	5.957771	TGCAAGATATTTAGGAGAGGTGT	57.042	39.130	0.00	0.00	0.00	4.16
1903	3202	9.113838	AGACCTTGTACAATGCAAGATATTTAG	57.886	33.333	9.13	0.00	44.29	1.85
1905	3204	7.944729	AGACCTTGTACAATGCAAGATATTT	57.055	32.000	9.13	0.00	44.29	1.40
1906	3205	9.113838	CTTAGACCTTGTACAATGCAAGATATT	57.886	33.333	9.13	0.00	44.29	1.28
1910	3294	4.695455	GCTTAGACCTTGTACAATGCAAGA	59.305	41.667	9.13	0.00	44.29	3.02
1921	3305	3.391296	TGGAAAGACAGCTTAGACCTTGT	59.609	43.478	0.00	0.00	32.98	3.16
1940	3324	5.454966	TCATACTACATCCTTACTGCTGGA	58.545	41.667	0.00	0.00	36.72	3.86
1975	3359	3.351740	TGTGTGTTGTCCATCTTGTGTT	58.648	40.909	0.00	0.00	0.00	3.32
1982	3366	5.239306	TGAAGAAAGATGTGTGTTGTCCATC	59.761	40.000	0.00	0.00	36.16	3.51
1993	3377	6.860023	GGTGTCAAAATCTGAAGAAAGATGTG	59.140	38.462	0.00	0.00	36.99	3.21
1995	3379	6.073058	TCGGTGTCAAAATCTGAAGAAAGATG	60.073	38.462	0.00	0.00	36.99	2.90
2125	3511	4.869861	GCTGTTTGTTTGTGTTCCATTCTT	59.130	37.500	0.00	0.00	0.00	2.52
2260	3647	2.355197	CAGGTTGTGTGTGTGTGAGAA	58.645	47.619	0.00	0.00	0.00	2.87
2314	3707	2.260869	CGGTGGTTCAGTTGCTGGG	61.261	63.158	0.00	0.00	31.51	4.45
2341	3734	6.194796	TCTGCTTGTGTATTATTTTGAGGC	57.805	37.500	0.00	0.00	0.00	4.70
2377	3770	3.181458	GCGGGTCATGGGTTTCTATAGAA	60.181	47.826	11.24	11.24	0.00	2.10
2431	3824	2.880268	TCTGTGATGTTGGCTTGTTGAG	59.120	45.455	0.00	0.00	0.00	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.