>input_sequence_77431
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--------------------------------------------------CCAATCCATCCAATTTCAGGCGACAGAAAA
CAAAATCCCCAAATCCATCTTCGTCCCCGGGAAAGAAAGAGAGAGAGAGAGCAGCCGAGATGTCTGGGCGCGGCAAGGGC
GGCAAGGGGCTCGGCAAGGGCGGGGCGAAGCGGCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGC
GATCCGGCGGCTGGCGCGTCGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGA
TCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCGCGCCGCAAGACCGTCACCGCCATGGACGTT
GTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGCTTTCCTTTCCTCGTAGCGGCTTGTTTA
C----GGAGTGCCTGTGCATCCTGGCGGT-------GTTTGGTGTCGAATGTTGTGTTCCTGATGTAACAGTG-CCTGTT
GCAGTGAAGTAAATCCTGGTGTCTTAT-----------------------------------------------------
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>chr4B_1_TraesCS4B01G225000
TTGAAGGTAGCCTTGCCTTATTCGTGTGGGGCCAGATC---TACATCAATACTCACAACCCTAGTCAACCATCACAACAC
CAAACATTCTCGTTTTGTGGGCCAGGCACAAAAATTCAGGAGCTTCTAGTTGACGT-------CTGTGTGCGTCAACTAG
GGGTGCCTTCGCTGAAGGCACGCCCAGTGGGTCTCCACCATGCCCCACATGTTG-TTTTTCTGTTCGGTTTTGTAGTTGT
T-TTTTTGTTTTGTTTTTTAGGAGCTAGATATTTC-AAGAACTGTTAGAAAATAGAAAAAACATTTTATAAACCTTTTCA
GTATGTGTTATATAAAAAACCTTACCATATATAAAAATATATTTAGTGTGTATTTATAAAATATTCATTGTATAATTTGA
AAAGTTCATCATATATTAAAAATGTTCAATGCATATAACA--AAAATAGTCATCATATATTATAGAAAATTGTCTGGTGT
GTATTTAAAAATGTACAACATA--------AATTTCAGTGTGTATTTG----------------------GAAAAATTTC
AGTGTATATTGCACCACCTATATAGAA----------------AAGAAACTCCTGTTCAAAAAATAAATATAAAAAAGAA
ATATGAAAAAACTATAAAAAGAAACCTAAAAAGGAAGAAAACTCAACATCTAAAAAACAG-AAAAAAAGTAGAAGAAACG
AAACAAAAAA-CTATACACA-CATTTTTTTTGAGAAATGAAACAGCTAT-AAAAAAAATACAGCCGAAAAGGCCGTCCCG
TCTGGCGGCATAC--------------------------------------------GGGATTGGCCCAAAATTTCCATC
TCCCCCGTGAACGCACAG--AAATTCCCG---------------------------------------------------
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-------CTCAGCCCTTCTTCCTGATTTCCATTCCCACCCGCGCGGGCAGACGCGATCCGCGCCCCTA-CCGCTCGACCA
ATAGGAACCAGCCCCACCTCGATCCAACGGCTAGGGCCATCGCGCTCGCCCCTCACGCGGATCGCTCCCCAATCCAACGG
CTCCCGCAACCGTCCCCCAGCTCTATATATCCCTGCCCGCTCGTGTCGTCCCAATCCATCCAATTTCAGGCGACAGAAAA
CAAAATCCCCAAATCCATCTTCGTCCCCGGGAAAGAAAGAGAGAGAGAGAGCAGCCGAGATGTCTGGGCGCGGCAAGGGC
GGCAAGGGGCTCGGCAAGGGCGGGGCGAAGCGGCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGC
GATCCGGCGGCTGGCGCGTCGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGA
TCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCGCGCCGCAAGACCGTCACCGCCATGGACGTT
GTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGCTTTCCTTTCCTCGTAGCGGCTTGTTTA
C----GGAGTGCCTGTGCATCCTGGCGGT-------GTTTGGTGTCGAATGTTGTGTTCCTGATGTAACAGTG-CCTGTT
GCAGTGAAGTAAATCCTGGTGTCTTATTTGCAAGAATGCAGTGATTGTGCCCCTTTTAATCCAATGCCAGAAATGCGTGC
GCTTC---TCTTTTGCGGCTGATTTCTTCTTTGGATAATTGCTTTGCTCCGGTTCTTGCAGCTGCAGTGGCATGCCAGTT
CT-----------------CAAATTATGCACGTTCCGGCTGAAAGTCTGAAACTGCCAAATTGGTGATGGCGCTTCAACA
TG------------------------------------------------------------------------------
-------------------------------------------------TTTTAGCTGTTTTTGAATTGCTATAGGTCTT
-GTACAATGCTAGGTGCTTAGAAAAATAAATCGATTTTTTCTAAGACACTTCTAGAGGAGAG--------ATGCTTAATT
AAGCGTCTATCTTGTACTACATCTTGTACAAATAAGCACCGGTGTTTAAGAAAACCTGATTTATTTCTCCAAACACCTCT
CCTAAA--------------------------------------------------------------------------
-----------TATCTTGCATTGTACAAGGTCTAAGCTGTCTTTCCAGCAGTAAGGATGTAGTATGAGTAACATAGAAAA
CACAAGATGGACAACACACATCTTTCTTCAGATTTTGACACCGATAAACAGATATAAACACAATGATCACCTTCAAACTG
ATGCAGGTTAACTTAGCTGTACATGAAGCCAGTTTTGGCACCAACGACATACACAGACTACT--TCACAAAAGAATGGAA
CACAAACAAACAGCAGCTCTCTTCTTCATGCAGGTAAGCAC-ATGTACAGTGAGGTTTTAGTGAGGTTTCAGACAAACAG
CAACCCAGAAAAAACTCTAGCAGAAGATAACGACAGCTAACACACAT------TCTCACACACACACAACCTGGTCATAA
CCGCTCGACTGCAAGGCAAGTATTACCCCAGCAACTGAACCACCGGAGGCGTCGCCTCAAAATAATACACAAGCAGATTC
GCCGAGTAGTTCTATAGAAACCCATGACCCGCATTCATCTGTCATCGATCCATTCGCCGAAGACTCAACAAGCCAACATC
ACAGAATCTTGCAATCCAGCTAATGTTCACTCTTTGCCCTTGGCGAAGAACCGACTAAAGCCGCGGCTTTGTTTCTC
>chr4A_1
TTGAAGGTAGCCTTGCCTTAGTCGTGTCAGGCCAGATCTAGTACATCAATACTCACAACCCTAGTCAACCATCGCAGCAC
CAAACATTCTGGTTTAGTGGGCCATGCACAAAATTACAGGAGCTCCTAGTTGACGCCTGACGCCTGTGTGCGTTAACTAG
GGGTGCCTTCGCTGAAGGCAAGCCCAGTGGGTCCCCACTATACCCCGCATGTTGCTTTTTTTGTTCAGTTTTGTAGTTGT
T-TTT--------------AGGAGTTGGATATTTT-TAGAACTATTGAAAAATAGAAAAAATAATTTAGAAACTTTTTCA
GTATGTGTTACATAAAAAAGTTTACCATATATAAAAATATATTTAGTGTCTATTTATAAAATATTCATCGTATAATTTGA
AAAGTCCATTATATATTAAAAATGTTCAATT--TATATAA--AAAATAGTCATCGTATATTATAGAAATTTGTCCAGTGT
GTATTTAAAAATGTGTAGCATATACTGGAAAAGTTCAGTGAGTATTTGAAAAATGTTCACCGTATATTGAGAAAAAGTTC
AGAATATATTGCACAACCTATATAAAAGAAGAAATATGCAAAAAGTATTAAAAAG-------------------------
-------------------------CTAAAGAGGAAGAAGACTGAACATCTAAAAAACAGAAAAAAAAGAAGAAGAAACG
AAACAAAAAAACTATACACA-TTTGTTTTTTGAGAAATGAAACAGCTG--AAAAAAAAGACAGCCGAAAAGGCCGGCCTG
TCTGGAGGCTGGCTTCAGCGAAGCGGCGACTGTGGTATGCCGCCCGCGGCGGCACATGGGATTGGCCCAAAATTTCCATC
TCCCCCGTGAACGCACAGAAAAATTCCCG---------------------------------------------------
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-------CTCAGCCCTTCTGCCTGAATTCCATCCCC-CCCGCGCGGGCAGCCGCGATCCGCGCCCCTACCCGCTCGACCA
ATAGGAACCAGCCC-ACCTCGATCCAACGGCTAAGGCCATCGCGCTCGCCCCTCACGCGGATCGCTCCCCGATCCAACGC
CTCCCGCGACCCTCCTCCAGCTCTATATATCCCCGCCCACTCGTCTCCCCCCAAACCATCCAATCCCAAGCAACAGAAAA
CAAAATCCCCAAATCCATCTTCGTGCCCGGGAAAGGAAGAGAGAGAGCG----GCGGAGATGTCTGGGCGCGGCAAGGGC
GGCAAGGGGCTGGGCAAGGGCGGCGCGAAGCGGCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGC
GATCCGGCGGCTGGCGCGCCGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGA
TCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCGCGCCGCAAGACCGTCACCGCCATGGACGTC
GTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGCTTTCCTTTCCTCGTGGCGGCTTGTTTA
CGGAGGGAGTGCCTGTTCATCCTGTTGGTGTTGGTAGTTTGGTGCCGAATGTTGTGTTCCTGATGTAACCGTGCCCTGTT
GCAGTGAAGTAAATCCTGGTGTCTTATTT-CAAGAATGCCGTGATTGTGCCCCTTTTAATCCAATGCCAGAAATGCGTGC
GCTTCTCTTCTTTTGCGGCTGATTTCTTCTTTGGACAATTGCTTTGCCCTGGTTCTTGCAGTTG-----------CAGTC
GTGTTGTTTTAGAGAACTCTAAATTATGAC----------------------CTCCCAAATTGGTGATGGCGCTTCAACA
TGCTCGCAGAAGGAAATATTAGCGGTGCTTTTTCCCTTGTCACCAATGTTTAGTTGGAATGGACAACCAGGATTGCAATT
TGCGTTCGTTGTATTTTCTGGATTGTTGAGAAAGAAAACTAGGCTGTTGTTTTTGCTGTTTCTGAATTGGTATA------
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----------------------------------AGCTGTCTTACCAGCAGCAAGGATG---TATGAGTAACATAGAAGA
CACAAAATGGGCAACAAAAATCTTTCTTCAGATTTTGACACTGATAAACAGATATAAACACAATGATAACCTTCAAACTG
ACGCAGGTTAACTTAGCTGTACATGAAGCCAGTTTTGGCACCAACGACATACACAGACTACTTCTCACAAGAGAATGGAA
CACAAACAAACAGCAGCTCTCTTCTTCATGCAGGTAAGCACCATGTACAGTGAGGTTTTAGTGAGGTTTCAGACAAACAG
CAACCCAGAAAAAACTCTAGAAGAAGATAACGACAGCTAACACACACACACTCTCTCTCTCACACACAACCTGGTCATAA
CCGCTCGACTGCAAGGCAAGTATTACTCCAGCAACTGAACCACCGGAGGCGTCACCCCAAAATAATACACAAGCAGATTC
GCCGAGTAGCTCTATAGAAACCCATGACCCGTTTTCATCCGTCATCCATCCATTCGCCGAAGAATCAACAAGCCAACATC
ACATAATCTTGCAATCCAGCTAATGTTCACTCTTTGCCCTTGGCGAAGAACCGACTAAAGCCCCGGCTTTGTTTCTC
>chr4D_3
--GAAGGTAGCCTTGCCTTAGTCGTGTGAGGCCAGATC---TACATCAATACTCACAACCCTAGTCAACCATCGCAACAC
CAAACATTCTCGTTTAGTGGGCCAGGCACAAAATTTCAGGAGCTCCTAGTTGACGC-------CCGTGTGTGTCAACTAG
GGGTGCCTTCGCTGAAGGCAAGCCTAGTGGGTCCCCACTATGCTCCGCATGTTG-TTCTTTTGTTCAGTTTTGTAGTAGT
TGTTGTTTTTTTGTTTTTTAGGAGTTGGATATTTTTAAGAACTATTGAAAAATAGAAAACATATTTTAGAAACTTTTTCA
GTATGTGTTATATAAAAAAGTTTACCATATATAAAAATGTATTTAGTGTGTATTTATAAAATATTCATCGTATAATTTGA
AAAGTCCATCATATATTAAAAATGTTCAATG--TATCTAACAAAAATAGTCATCATATATTATAGAAAATTGTCAAGTGT
GTATTTTAAAATGTACAACATATACTAAAAAAGTTTAGTGTGTTTTTGGAAAATGTTCACCGTATATTGAGAAAAAGTTC
AGCGTATATTGCAGAACCTATATAAAA----------------AGTATTAAAAAA-------------------------
-------------------------GTAAAAAGGAAGAAAGCTCAACATCTAAAAAATAG-GAAAAAATAAGAAGAAACG
AAACAGAAAA-CTATACATATTTTTGTTTTTGAAAAATGAAAGAGCTGGAAAAAAAAAGACAGCCGAAAAGGCCGGCCCG
TCTGGAGGCTGGCTTCAGCGAAGCGACGACTGT-GTATGCCGCCCGCGGCGGCATA--GGATTGGCCCAAAATTTCCATC
TCCCCCGAGAATGCACAGAAATTCCCGCTCAGAGCATCTTCACTAGGGCCCCGGGACGCCCCAAGCACTTTTTTTTAGCA
CCGGCGGGTAAAAAACGTCCCAGTCAGGCCCCCAAAACGTCGTTTTGCGCCGGATTTTGCAAAAATTAGCGCCGGCACGC
CCACCCCGCACCCAGCCCGCCAGGGGCAGCTGGGGACGCCGGCATATGCTTTTTGCAGGCGCTGCCCCACTTGCCAGCCC
CTCTCTCTCCCGTCTCCTCTCCTTTTTCTCTGTTCTTTCTCCTCTCTCCTCTCCTTTTCCTTCCGGGTGTGGGCCAGCCC
TCTCGGGTTCCGGCCGGAGCGGCACCTGGCCGGCGACGACGCCACCATGGCGCTCAGTGAGCCGGAGCTGCGGTTCGTGT
CCTTCAGCACCGGGCGGCGGGCTGCCCCGGGATCGCGCTGGGCACCCTCTTCACTGTCATGTTGTTCGCGCGGCTCCTGC
AGGGGTTCACCTGGAGCTTGCCGCCCGGCGTGGACGGCGTGTGCCCAAGATCCTCTCCGACCTGGGATTCGACGCGGAGC
AGAAGCTCCTTGAGAGCTGGAGATCCACATCAGCCTGGAGCTGAAGAACACGCTGGACAAGATGGCGGCCCTGCCGCGGC
ACACCCGGGAGGATGTGGAGGACATCCTGGACGGCGGCTTGGAGCGAGGCCGACGAGGCGGTCCAGCAGGCGGCGGAAGC
CCCGGTCGAGGATGGTACGGCGCAGCGGCTTGTCTCCCTCCGCGCAGCGCACAACGAAGACGGCGTCGGAGATGGAGGGG
AGGACGGAGACGGCGCCGGTGAAGCTGTGGCTCCTCTGCTCCGCCGGCTCGCGCTCGCGCTCTGCGGCTCTGCTCAAGCT
CGGCGGCGAGGCCGGGCCGGCCGTGGCCTGGAGCGGGCGCGGCCTGGGCACGGCTTGGGGGTGGACACGGCTGGAAACTT
TTTCACCCCCAAGCCAAAAAAATCCGCCGGCAGCCCTCCAAGCGGTGAAAAAATTGCCTTCTGGCGGGCTCAACGGCTGG
AGATGCTCTCAGCCCTTCTTCCTGATTTCCATTTG-----GCCCGGGCAGCCTTGATCCGCGCGCCTA-CCGCTCGACCA
ATAGGAACCAGCCCCGCCTCGATCCAACGGCCAAGGCCATCGCGCTCGCCCCTCACGCGGATCGCTCCCCGATCCAATGC
CTCCCGCG-CCCTCCTCCAGCTCTATATATCCC-------------------AAACCAGCCAATACCAAGCAACAGAAAA
CAAAATCCCCAAATCCATCTTCGTCCCCGGGAAAGAGAGAGAGAGAGAGAGCAGCGGAGATGTCTGGGCGCGGCAAGGGC
GGCAAGGGGCTCGGCAAGGGCGGAGCGAAGCGGCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGC
GATCCGGCGGCTGGCGCGTCGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGA
TCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCATGCGCGCCGCAAGACCGTCACCGCCATGGACGTG
GTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGCTTTCCGTTCCTCGTAGCGGCTTGTTTG
CTGGTGGTGTGGTGG----------------TGGTAGTTTGGTGTCGAATGTTGTGTTCCTGATGTAACCGTGCCCTGTT
GCAGTGAAGTAAATCCTGGTGTCTTATTTGCAAGAATGCCGTGATTGTGCCCCTTTTAATCCAATGTCAGATATGCGTGC
GCTTC---TCTTTTGCGGCTTATTTCTTCTTTGGATAATTGCTTTGCTCTGGTTATTGCAGCTGCAGTGGCATGCCAGTG
GTGTTGTTCTAGACAACTGCAAATTATGCACGTTCCGGCTGAAAGTCTGAAACTGCCAAATTGGTGATGACGCTTCAACA
TGTTCGCACAAGTAAATATCGGCGGTGCTTTTTGCCTTGTCACCTAGGATTGTAAACTGGCAAGAC------------TT
TGCGTTTGTTGTGTTTTCTGGATTGTTGAGAAAGAAAACTAGGCGCTTGGTTTTGCTGTTTTTGAATTGCTATAGGACTT
TGTACAATACTAGGTGCTCAGAAAAATGAATCGGATCTTTCTAAAACACAGGTGCCTATTTTTAGAGTAAATGCCTAATT
AAGCATGTATCC------------TGTACAAATAAGCACTGATGCTTAAGAAAACCTGATTTATTTCTTCAAGCACCTCT
CTCCTAAGTACTCCCTCTGTAAATAAATATAAAAGCGTTTAAATCACTACTTTAATTATCTAAACGCTCTTATATTTGTT
TACAGACGGAGTACCTTGCATTGTGCAAGGTCTAAGCAGTCTT-CCAGCAGTAAGGATGTAGTATGAGTAACATAGAAGA
CACAAAATGGACAACAAAAATCTTTCTTCAGATTTTGACACTGATAAACAGATATGAACACAATGATAACCTTCAAATTG
ATGCAGGTTAACTTAGCTGTACATGAAGCCAGTTTTGGCACCAACGACATACACAGACTACT--TCACAAGAGAATGGAA
CACAAACAAACAGCAGCTCTCTTCTTCATGCAGGTAAGCAC-ATGTACAGTGAGGTTTTAGTGAGGTTTCAGACAAACAG
CAACCCAGAAAAAACTCTAGCAGAAGATAACGACAGCTAACACAC--------TCTCACACACACACAACCTGGTCATAA
CCGCTCGACTGCAAGGCAAGTATT--------AACTGAACCACCGGAGGCGTCACCTCAAAATAATACACAAGCAGATTC
GCCGAGTAGCTCTATAGAAACCCATGACCCGCATTCATCCGTTATCGATCCATTCGCCGAAGAATCAACAAGCCAACATC
ACAGAATCTTGCAATCCAGCTAATGTTCACTCTTTGCCCTTGGCGAAGAACCGACTAAAGCCCCGGCTTTGTTTCTC
>SNPs
--------------------S-------S--------------------------------------------S------
---------------S-----------------S----------S----------S------------------------
--------------------S------------S----S-------S-------------S-----S-------------
-------S----------------S-S-------S--------S--SS-------------S------S----S------
-------------------SS-----------------------------------------------S-----------
-----S-------------------------SS----SS-----------------------------------SS----
--------------------------------S-------------------------------------------S---
--S-----------S---------S-------------------SS-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------S----------
---------------------SS------------------------SS---------S----------------S----
-----S---SSS--------------------------------------------------------------------
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------------------------------------S-------------S-----------------------------
---------------------------------S------------------------------------S--------S
-------S---S---S-----------------S----S-----S--SS-----S---------SS--S--S--------
-------------------------------------------------------S------------------------
-----------------------S--------------------------------------------------------
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-------------------------------------------------------------------------------S
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----------------S-------SS-------------------------------------------S----------
---------------------------------------S----------------------------------------
-------------------------------------------------S-----------------------------S
S-------------------------------------------------------------------------------
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-----------------------------------------------------S----------------------S---
--------S---------S--------S-----SS-S-------S----SSS-SSSSSSSSS------------S-----
----S-S----SSSSSSSSSSSSS---------------S-S--S-----------------------S---S-------
-SSSS---------------------------------------------------------------------------
-------------S----------S------------------S----------------------------------S-
-----S----------S-S----------------------S-------------------------S------------
----------------------------------------------------------------------S---------
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----------------------------------------------S---------------------------------
--------------------------S--------------------------S--------------------------
---------S-----------------------------S-----------------------S----------------
--------------------------------------------------------------S--------------
>forward_2034
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--------------CACCTCGATCCAACGGCTAG----------------------------------------------
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>reverse_3707
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--------------------------CCCAGCAACTGAACCACCG-----------------------------------
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