Multiple sequence alignment - TraesCS4B01G224800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G224800 chr4B 100.000 2668 0 0 1 2668 470971151 470973818 0.000000e+00 4927.0
1 TraesCS4B01G224800 chr4B 86.989 1076 90 33 704 1754 499059603 499060653 0.000000e+00 1166.0
2 TraesCS4B01G224800 chr4D 92.090 1947 88 27 1 1907 383782092 383784012 0.000000e+00 2682.0
3 TraesCS4B01G224800 chr4D 88.736 1092 73 25 703 1754 402970948 402972029 0.000000e+00 1290.0
4 TraesCS4B01G224800 chr4D 88.164 414 31 9 2246 2659 383788673 383789068 6.680000e-131 477.0
5 TraesCS4B01G224800 chr4D 92.273 220 16 1 1903 2121 45391618 45391837 7.170000e-81 311.0
6 TraesCS4B01G224800 chr4D 96.250 80 3 0 2122 2201 383784011 383784090 5.990000e-27 132.0
7 TraesCS4B01G224800 chr4D 90.000 60 6 0 2188 2247 383788652 383788711 7.920000e-11 78.7
8 TraesCS4B01G224800 chr4A 92.503 1774 62 28 1 1750 65465618 65467344 0.000000e+00 2473.0
9 TraesCS4B01G224800 chr4A 89.293 990 71 23 703 1674 60344148 60345120 0.000000e+00 1208.0
10 TraesCS4B01G224800 chr4A 93.277 119 8 0 2122 2240 65467568 65467686 2.730000e-40 176.0
11 TraesCS4B01G224800 chr1D 81.151 695 95 21 995 1673 410472269 410471595 2.350000e-145 525.0
12 TraesCS4B01G224800 chr1D 80.731 711 101 21 995 1689 410482899 410482209 3.040000e-144 521.0
13 TraesCS4B01G224800 chr1B 86.296 467 52 5 1212 1666 553135973 553135507 5.130000e-137 497.0
14 TraesCS4B01G224800 chr1B 85.987 471 51 6 1211 1666 553025054 553024584 8.580000e-135 490.0
15 TraesCS4B01G224800 chr1B 92.237 219 16 1 1906 2123 133022884 133022666 2.580000e-80 309.0
16 TraesCS4B01G224800 chr1B 91.150 226 19 1 1906 2130 654508410 654508635 3.340000e-79 305.0
17 TraesCS4B01G224800 chrUn 90.909 231 19 2 1904 2132 103268599 103268369 2.580000e-80 309.0
18 TraesCS4B01G224800 chr2D 92.237 219 16 1 1906 2123 284560175 284559957 2.580000e-80 309.0
19 TraesCS4B01G224800 chr7A 91.518 224 17 2 1901 2123 219906882 219906660 9.280000e-80 307.0
20 TraesCS4B01G224800 chr6B 90.870 230 19 2 1904 2132 307574010 307574238 9.280000e-80 307.0
21 TraesCS4B01G224800 chr2B 91.518 224 18 1 1905 2127 133596109 133596332 9.280000e-80 307.0
22 TraesCS4B01G224800 chr7D 90.171 234 21 2 1898 2130 7524740 7524972 1.200000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G224800 chr4B 470971151 470973818 2667 False 4927.0 4927 100.000 1 2668 1 chr4B.!!$F1 2667
1 TraesCS4B01G224800 chr4B 499059603 499060653 1050 False 1166.0 1166 86.989 704 1754 1 chr4B.!!$F2 1050
2 TraesCS4B01G224800 chr4D 383782092 383784090 1998 False 1407.0 2682 94.170 1 2201 2 chr4D.!!$F3 2200
3 TraesCS4B01G224800 chr4D 402970948 402972029 1081 False 1290.0 1290 88.736 703 1754 1 chr4D.!!$F2 1051
4 TraesCS4B01G224800 chr4A 65465618 65467686 2068 False 1324.5 2473 92.890 1 2240 2 chr4A.!!$F2 2239
5 TraesCS4B01G224800 chr4A 60344148 60345120 972 False 1208.0 1208 89.293 703 1674 1 chr4A.!!$F1 971
6 TraesCS4B01G224800 chr1D 410471595 410472269 674 True 525.0 525 81.151 995 1673 1 chr1D.!!$R1 678
7 TraesCS4B01G224800 chr1D 410482209 410482899 690 True 521.0 521 80.731 995 1689 1 chr1D.!!$R2 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 249 0.65784 GCATTGGGAGCGTGTATGTC 59.342 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 1831 0.240411 AACGTCAGAGTCCGTAGTGC 59.76 55.0 0.0 0.0 36.04 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.955428 GCCCAATCGTGCTTCAGTCA 60.955 55.000 0.00 0.00 0.00 3.41
248 249 0.657840 GCATTGGGAGCGTGTATGTC 59.342 55.000 0.00 0.00 0.00 3.06
399 406 4.324402 CGTTAACTTTTGATTGGCATCAGC 59.676 41.667 3.71 0.00 40.66 4.26
419 426 2.135933 CTGGTTCTGGTTCAGTTCGAC 58.864 52.381 0.00 0.00 32.61 4.20
484 491 2.291465 TGACCCGCATCTACGTACATAC 59.709 50.000 0.00 0.00 0.00 2.39
560 569 3.746492 ACTGCCGACACTAAAACATCTTC 59.254 43.478 0.00 0.00 0.00 2.87
561 570 3.997021 CTGCCGACACTAAAACATCTTCT 59.003 43.478 0.00 0.00 0.00 2.85
563 572 4.213270 TGCCGACACTAAAACATCTTCTTG 59.787 41.667 0.00 0.00 0.00 3.02
565 574 4.755123 CCGACACTAAAACATCTTCTTGGT 59.245 41.667 0.00 0.00 0.00 3.67
566 575 5.929992 CCGACACTAAAACATCTTCTTGGTA 59.070 40.000 0.00 0.00 0.00 3.25
567 576 6.090898 CCGACACTAAAACATCTTCTTGGTAG 59.909 42.308 0.00 0.00 0.00 3.18
639 650 3.440228 GTGTCTCTAATGGCTTCTCGTC 58.560 50.000 0.00 0.00 0.00 4.20
658 669 2.100631 ATCTCGCGCCAAAAGACCG 61.101 57.895 0.00 0.00 0.00 4.79
659 670 2.781595 ATCTCGCGCCAAAAGACCGT 62.782 55.000 0.00 0.00 0.00 4.83
774 811 1.074775 GTGCATGGTTCCCTGGACA 59.925 57.895 12.12 0.00 34.28 4.02
786 823 1.289066 CTGGACATCCACGTCGTGT 59.711 57.895 23.01 5.25 42.01 4.49
810 847 1.744368 CTCTCGCTGCAGGCACAAT 60.744 57.895 17.12 0.00 41.91 2.71
1147 1198 1.517257 CGCCTAACTGACTCTGCCG 60.517 63.158 0.00 0.00 0.00 5.69
1183 1251 8.403236 GTTTACTCTGTACAAGTTTCAATTGGT 58.597 33.333 5.42 0.00 31.76 3.67
1208 1276 1.253593 TGACTCACGATGCTCTGCCT 61.254 55.000 0.00 0.00 0.00 4.75
1238 1309 2.030981 GGATATCGAGTCGACCAAGGAC 60.031 54.545 19.16 5.40 39.18 3.85
1279 1356 2.525629 CCCAACCCCAACCCCAAC 60.526 66.667 0.00 0.00 0.00 3.77
1285 1368 2.203773 CCCAACCCCAACCCCAAG 60.204 66.667 0.00 0.00 0.00 3.61
1286 1369 2.612251 CCAACCCCAACCCCAAGT 59.388 61.111 0.00 0.00 0.00 3.16
1730 1822 5.012239 ACATATTTGTTGGTCATGCTGAGT 58.988 37.500 0.00 0.00 29.55 3.41
1738 1830 3.708451 TGGTCATGCTGAGTAACTAGGA 58.292 45.455 0.00 0.00 0.00 2.94
1739 1831 3.701542 TGGTCATGCTGAGTAACTAGGAG 59.298 47.826 0.00 0.00 0.00 3.69
1740 1832 3.491792 GGTCATGCTGAGTAACTAGGAGC 60.492 52.174 0.00 0.00 0.00 4.70
1782 1940 5.307196 TCTGTAAGCCTTAGGTTGTCTTTCT 59.693 40.000 0.00 0.00 34.89 2.52
1788 1946 4.023107 GCCTTAGGTTGTCTTTCTTTGGTC 60.023 45.833 0.00 0.00 0.00 4.02
1797 1955 4.761739 TGTCTTTCTTTGGTCATGATGTCC 59.238 41.667 0.00 1.59 0.00 4.02
1829 1987 6.455360 ACAATTAATGCAGGAATGAATCGT 57.545 33.333 0.00 0.00 0.00 3.73
1840 1998 4.813161 AGGAATGAATCGTGTTCATGCTAG 59.187 41.667 17.69 0.00 38.96 3.42
1864 2025 1.555075 TCCCATTCTAAGACGCTTGCT 59.445 47.619 2.86 0.00 0.00 3.91
1866 2027 2.096496 CCCATTCTAAGACGCTTGCTTG 59.904 50.000 2.86 0.00 0.00 4.01
1877 2038 5.407502 AGACGCTTGCTTGTTTTAAGTTTT 58.592 33.333 0.00 0.00 0.00 2.43
1879 2040 6.691388 AGACGCTTGCTTGTTTTAAGTTTTAG 59.309 34.615 0.00 0.00 0.00 1.85
1911 2072 9.877178 ATCATCAATTAGACGAATAATACTCCC 57.123 33.333 0.00 0.00 0.00 4.30
1912 2073 9.090103 TCATCAATTAGACGAATAATACTCCCT 57.910 33.333 0.00 0.00 0.00 4.20
1913 2074 9.360093 CATCAATTAGACGAATAATACTCCCTC 57.640 37.037 0.00 0.00 0.00 4.30
1914 2075 8.707796 TCAATTAGACGAATAATACTCCCTCT 57.292 34.615 0.00 0.00 0.00 3.69
1915 2076 8.794553 TCAATTAGACGAATAATACTCCCTCTC 58.205 37.037 0.00 0.00 0.00 3.20
1916 2077 8.798402 CAATTAGACGAATAATACTCCCTCTCT 58.202 37.037 0.00 0.00 0.00 3.10
1917 2078 7.982761 TTAGACGAATAATACTCCCTCTCTC 57.017 40.000 0.00 0.00 0.00 3.20
1918 2079 6.195600 AGACGAATAATACTCCCTCTCTCT 57.804 41.667 0.00 0.00 0.00 3.10
1919 2080 6.607019 AGACGAATAATACTCCCTCTCTCTT 58.393 40.000 0.00 0.00 0.00 2.85
1920 2081 7.747690 AGACGAATAATACTCCCTCTCTCTTA 58.252 38.462 0.00 0.00 0.00 2.10
1921 2082 8.219178 AGACGAATAATACTCCCTCTCTCTTAA 58.781 37.037 0.00 0.00 0.00 1.85
1922 2083 8.943594 ACGAATAATACTCCCTCTCTCTTAAT 57.056 34.615 0.00 0.00 0.00 1.40
1923 2084 9.369672 ACGAATAATACTCCCTCTCTCTTAATT 57.630 33.333 0.00 0.00 0.00 1.40
1929 2090 6.800072 ACTCCCTCTCTCTTAATTTACAGG 57.200 41.667 0.00 0.00 0.00 4.00
1930 2091 5.663556 ACTCCCTCTCTCTTAATTTACAGGG 59.336 44.000 0.00 0.00 40.83 4.45
1931 2092 4.409247 TCCCTCTCTCTTAATTTACAGGGC 59.591 45.833 0.00 0.00 39.49 5.19
1932 2093 4.372656 CCTCTCTCTTAATTTACAGGGCG 58.627 47.826 0.00 0.00 0.00 6.13
1933 2094 4.141914 CCTCTCTCTTAATTTACAGGGCGT 60.142 45.833 0.00 0.00 0.00 5.68
1934 2095 4.755411 TCTCTCTTAATTTACAGGGCGTG 58.245 43.478 5.50 5.50 0.00 5.34
1935 2096 3.267483 TCTCTTAATTTACAGGGCGTGC 58.733 45.455 7.17 0.00 0.00 5.34
1936 2097 2.004017 TCTTAATTTACAGGGCGTGCG 58.996 47.619 7.17 0.00 0.00 5.34
1937 2098 0.448593 TTAATTTACAGGGCGTGCGC 59.551 50.000 7.17 8.17 41.06 6.09
1938 2099 1.697772 TAATTTACAGGGCGTGCGCG 61.698 55.000 16.86 16.86 43.06 6.86
1939 2100 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
1940 2101 2.839043 ATTTACAGGGCGTGCGCGTA 62.839 55.000 22.18 0.00 43.06 4.42
1941 2102 2.839043 TTTACAGGGCGTGCGCGTAT 62.839 55.000 22.18 4.49 43.06 3.06
1942 2103 3.761445 TACAGGGCGTGCGCGTATC 62.761 63.158 22.18 11.01 43.06 2.24
1946 2107 4.274700 GGCGTGCGCGTATCCCTA 62.275 66.667 22.18 0.00 43.06 3.53
1947 2108 2.729862 GCGTGCGCGTATCCCTAG 60.730 66.667 22.18 0.00 40.81 3.02
1948 2109 2.050351 CGTGCGCGTATCCCTAGG 60.050 66.667 12.43 0.06 0.00 3.02
1949 2110 2.842256 CGTGCGCGTATCCCTAGGT 61.842 63.158 12.43 0.00 0.00 3.08
1950 2111 1.007618 GTGCGCGTATCCCTAGGTC 60.008 63.158 8.43 0.00 0.00 3.85
1951 2112 2.254651 GCGCGTATCCCTAGGTCG 59.745 66.667 8.43 8.12 0.00 4.79
1952 2113 2.550101 GCGCGTATCCCTAGGTCGT 61.550 63.158 8.43 0.00 0.00 4.34
1953 2114 1.573436 CGCGTATCCCTAGGTCGTC 59.427 63.158 8.29 3.46 0.00 4.20
1954 2115 1.162181 CGCGTATCCCTAGGTCGTCA 61.162 60.000 8.29 0.00 0.00 4.35
1955 2116 0.592148 GCGTATCCCTAGGTCGTCAG 59.408 60.000 8.29 0.00 0.00 3.51
1956 2117 1.964552 CGTATCCCTAGGTCGTCAGT 58.035 55.000 8.29 0.00 0.00 3.41
1957 2118 2.295885 CGTATCCCTAGGTCGTCAGTT 58.704 52.381 8.29 0.00 0.00 3.16
1958 2119 2.686915 CGTATCCCTAGGTCGTCAGTTT 59.313 50.000 8.29 0.00 0.00 2.66
1959 2120 3.488721 CGTATCCCTAGGTCGTCAGTTTG 60.489 52.174 8.29 0.00 0.00 2.93
1960 2121 2.297698 TCCCTAGGTCGTCAGTTTGA 57.702 50.000 8.29 0.00 0.00 2.69
1961 2122 1.891150 TCCCTAGGTCGTCAGTTTGAC 59.109 52.381 8.29 0.00 43.65 3.18
1970 2131 5.668558 GTCGTCAGTTTGACCAACTTAAT 57.331 39.130 3.81 0.00 43.89 1.40
1971 2132 6.774354 GTCGTCAGTTTGACCAACTTAATA 57.226 37.500 3.81 0.00 43.89 0.98
1972 2133 6.587651 GTCGTCAGTTTGACCAACTTAATAC 58.412 40.000 3.81 0.00 43.89 1.89
1973 2134 6.201425 GTCGTCAGTTTGACCAACTTAATACA 59.799 38.462 3.81 0.00 43.89 2.29
1974 2135 6.762187 TCGTCAGTTTGACCAACTTAATACAA 59.238 34.615 3.81 0.00 43.89 2.41
1975 2136 7.042321 TCGTCAGTTTGACCAACTTAATACAAG 60.042 37.037 3.81 0.00 43.89 3.16
1976 2137 7.254658 CGTCAGTTTGACCAACTTAATACAAGT 60.255 37.037 3.81 0.00 43.89 3.16
1977 2138 8.068380 GTCAGTTTGACCAACTTAATACAAGTC 58.932 37.037 0.00 0.00 43.89 3.01
1978 2139 7.771361 TCAGTTTGACCAACTTAATACAAGTCA 59.229 33.333 0.00 0.00 43.89 3.41
1979 2140 8.567948 CAGTTTGACCAACTTAATACAAGTCAT 58.432 33.333 0.00 0.00 43.89 3.06
1980 2141 9.787435 AGTTTGACCAACTTAATACAAGTCATA 57.213 29.630 0.00 0.00 43.89 2.15
2029 2190 9.450807 AAACTTCAGATGTTCTATTTTCAAACG 57.549 29.630 2.28 0.00 0.00 3.60
2030 2191 8.378172 ACTTCAGATGTTCTATTTTCAAACGA 57.622 30.769 0.00 0.00 0.00 3.85
2031 2192 9.003658 ACTTCAGATGTTCTATTTTCAAACGAT 57.996 29.630 0.00 0.00 0.00 3.73
2081 2242 7.607615 ATTAGGATGATAAAATTGGCAAGCT 57.392 32.000 5.96 0.00 0.00 3.74
2082 2243 8.710749 ATTAGGATGATAAAATTGGCAAGCTA 57.289 30.769 5.96 0.00 0.00 3.32
2083 2244 6.645790 AGGATGATAAAATTGGCAAGCTAG 57.354 37.500 5.96 0.00 0.00 3.42
2084 2245 6.367983 AGGATGATAAAATTGGCAAGCTAGA 58.632 36.000 5.96 0.00 0.00 2.43
2085 2246 7.008941 AGGATGATAAAATTGGCAAGCTAGAT 58.991 34.615 5.96 0.00 0.00 1.98
2086 2247 8.166061 AGGATGATAAAATTGGCAAGCTAGATA 58.834 33.333 5.96 0.00 0.00 1.98
2087 2248 8.964772 GGATGATAAAATTGGCAAGCTAGATAT 58.035 33.333 5.96 0.00 0.00 1.63
2090 2251 8.935844 TGATAAAATTGGCAAGCTAGATATACG 58.064 33.333 5.96 0.00 0.00 3.06
2091 2252 5.613358 AAATTGGCAAGCTAGATATACGC 57.387 39.130 5.96 0.00 0.00 4.42
2092 2253 2.347697 TGGCAAGCTAGATATACGCG 57.652 50.000 3.53 3.53 0.00 6.01
2093 2254 1.611977 TGGCAAGCTAGATATACGCGT 59.388 47.619 19.17 19.17 0.00 6.01
2094 2255 2.815503 TGGCAAGCTAGATATACGCGTA 59.184 45.455 22.94 22.94 0.00 4.42
2095 2256 3.442625 TGGCAAGCTAGATATACGCGTAT 59.557 43.478 32.13 32.13 0.00 3.06
2096 2257 3.791887 GGCAAGCTAGATATACGCGTATG 59.208 47.826 35.61 22.06 0.00 2.39
2097 2258 4.438336 GGCAAGCTAGATATACGCGTATGA 60.438 45.833 35.61 21.86 0.00 2.15
2098 2259 4.496183 GCAAGCTAGATATACGCGTATGAC 59.504 45.833 35.61 27.63 0.00 3.06
2099 2260 5.674068 GCAAGCTAGATATACGCGTATGACT 60.674 44.000 35.61 31.47 0.00 3.41
2100 2261 6.315551 CAAGCTAGATATACGCGTATGACTT 58.684 40.000 35.61 24.73 0.00 3.01
2101 2262 5.870444 AGCTAGATATACGCGTATGACTTG 58.130 41.667 35.61 29.99 0.00 3.16
2102 2263 5.411977 AGCTAGATATACGCGTATGACTTGT 59.588 40.000 35.61 20.07 0.00 3.16
2103 2264 6.592994 AGCTAGATATACGCGTATGACTTGTA 59.407 38.462 35.61 18.32 0.00 2.41
2104 2265 7.118825 AGCTAGATATACGCGTATGACTTGTAA 59.881 37.037 35.61 17.62 0.00 2.41
2105 2266 7.747799 GCTAGATATACGCGTATGACTTGTAAA 59.252 37.037 35.61 16.94 0.00 2.01
2106 2267 7.848716 AGATATACGCGTATGACTTGTAAAC 57.151 36.000 35.61 15.72 0.00 2.01
2107 2268 7.646314 AGATATACGCGTATGACTTGTAAACT 58.354 34.615 35.61 17.49 0.00 2.66
2108 2269 5.944049 ATACGCGTATGACTTGTAAACTG 57.056 39.130 29.77 0.00 0.00 3.16
2109 2270 3.904571 ACGCGTATGACTTGTAAACTGA 58.095 40.909 11.67 0.00 0.00 3.41
2110 2271 4.300803 ACGCGTATGACTTGTAAACTGAA 58.699 39.130 11.67 0.00 0.00 3.02
2111 2272 4.746115 ACGCGTATGACTTGTAAACTGAAA 59.254 37.500 11.67 0.00 0.00 2.69
2112 2273 5.070862 CGCGTATGACTTGTAAACTGAAAC 58.929 41.667 0.00 0.00 0.00 2.78
2113 2274 5.070862 GCGTATGACTTGTAAACTGAAACG 58.929 41.667 0.00 0.00 0.00 3.60
2114 2275 5.605327 CGTATGACTTGTAAACTGAAACGG 58.395 41.667 0.00 0.00 0.00 4.44
2115 2276 5.403166 CGTATGACTTGTAAACTGAAACGGA 59.597 40.000 0.00 0.00 0.00 4.69
2116 2277 5.924475 ATGACTTGTAAACTGAAACGGAG 57.076 39.130 0.00 0.00 0.00 4.63
2117 2278 4.124238 TGACTTGTAAACTGAAACGGAGG 58.876 43.478 0.00 0.00 0.00 4.30
2118 2279 3.473625 ACTTGTAAACTGAAACGGAGGG 58.526 45.455 0.00 0.00 0.00 4.30
2119 2280 3.135167 ACTTGTAAACTGAAACGGAGGGA 59.865 43.478 0.00 0.00 0.00 4.20
2120 2281 3.396260 TGTAAACTGAAACGGAGGGAG 57.604 47.619 0.00 0.00 0.00 4.30
2121 2282 2.701951 TGTAAACTGAAACGGAGGGAGT 59.298 45.455 0.00 0.00 0.00 3.85
2122 2283 3.896888 TGTAAACTGAAACGGAGGGAGTA 59.103 43.478 0.00 0.00 0.00 2.59
2183 2344 9.887406 AAAGTTATTCAAATACGAATTCAACGT 57.113 25.926 6.22 0.88 45.75 3.99
2220 2381 6.553100 TCTTCATAACCCACATTTTCTTGGTT 59.447 34.615 0.00 0.00 41.85 3.67
2228 2389 5.279256 CCCACATTTTCTTGGTTAAACCGAT 60.279 40.000 0.00 0.00 42.58 4.18
2232 2393 5.441709 TTTTCTTGGTTAAACCGATGGTC 57.558 39.130 0.00 0.00 42.58 4.02
2233 2394 3.773418 TCTTGGTTAAACCGATGGTCA 57.227 42.857 0.00 0.00 42.58 4.02
2240 2401 5.826737 TGGTTAAACCGATGGTCAAACTTAA 59.173 36.000 11.07 1.35 42.58 1.85
2241 2402 6.490721 TGGTTAAACCGATGGTCAAACTTAAT 59.509 34.615 11.07 0.00 42.58 1.40
2242 2403 7.014422 TGGTTAAACCGATGGTCAAACTTAATT 59.986 33.333 11.07 0.00 42.58 1.40
2243 2404 7.539710 GGTTAAACCGATGGTCAAACTTAATTC 59.460 37.037 11.07 0.00 33.12 2.17
2244 2405 5.638596 AACCGATGGTCAAACTTAATTCC 57.361 39.130 0.00 0.00 33.12 3.01
2245 2406 4.014406 ACCGATGGTCAAACTTAATTCCC 58.986 43.478 0.00 0.00 0.00 3.97
2246 2407 4.013728 CCGATGGTCAAACTTAATTCCCA 58.986 43.478 0.00 0.00 0.00 4.37
2247 2408 4.644685 CCGATGGTCAAACTTAATTCCCAT 59.355 41.667 0.00 0.00 34.06 4.00
2248 2409 5.127031 CCGATGGTCAAACTTAATTCCCATT 59.873 40.000 0.00 0.00 31.62 3.16
2249 2410 6.350949 CCGATGGTCAAACTTAATTCCCATTT 60.351 38.462 0.00 0.00 31.62 2.32
2250 2411 7.096551 CGATGGTCAAACTTAATTCCCATTTT 58.903 34.615 0.00 0.00 31.62 1.82
2251 2412 7.275560 CGATGGTCAAACTTAATTCCCATTTTC 59.724 37.037 0.00 0.00 31.62 2.29
2252 2413 7.610580 TGGTCAAACTTAATTCCCATTTTCT 57.389 32.000 0.00 0.00 0.00 2.52
2253 2414 8.028652 TGGTCAAACTTAATTCCCATTTTCTT 57.971 30.769 0.00 0.00 0.00 2.52
2254 2415 7.930865 TGGTCAAACTTAATTCCCATTTTCTTG 59.069 33.333 0.00 0.00 0.00 3.02
2255 2416 7.387673 GGTCAAACTTAATTCCCATTTTCTTGG 59.612 37.037 0.00 0.00 36.46 3.61
2256 2417 7.931407 GTCAAACTTAATTCCCATTTTCTTGGT 59.069 33.333 0.00 0.00 34.77 3.67
2257 2418 8.490311 TCAAACTTAATTCCCATTTTCTTGGTT 58.510 29.630 0.00 0.00 34.77 3.67
2258 2419 9.771534 CAAACTTAATTCCCATTTTCTTGGTTA 57.228 29.630 0.00 0.00 34.77 2.85
2261 2422 9.772973 ACTTAATTCCCATTTTCTTGGTTAAAC 57.227 29.630 0.00 0.00 34.77 2.01
2262 2423 9.214957 CTTAATTCCCATTTTCTTGGTTAAACC 57.785 33.333 0.00 0.00 39.22 3.27
2263 2424 4.857509 TCCCATTTTCTTGGTTAAACCG 57.142 40.909 0.00 0.00 42.58 4.44
2264 2425 4.471548 TCCCATTTTCTTGGTTAAACCGA 58.528 39.130 0.00 0.00 42.58 4.69
2265 2426 5.081032 TCCCATTTTCTTGGTTAAACCGAT 58.919 37.500 0.00 0.00 42.58 4.18
2266 2427 5.047660 TCCCATTTTCTTGGTTAAACCGATG 60.048 40.000 0.00 0.00 42.58 3.84
2267 2428 5.167845 CCATTTTCTTGGTTAAACCGATGG 58.832 41.667 0.00 0.00 42.58 3.51
2268 2429 5.279256 CCATTTTCTTGGTTAAACCGATGGT 60.279 40.000 0.00 0.00 42.58 3.55
2269 2430 5.441709 TTTTCTTGGTTAAACCGATGGTC 57.558 39.130 0.00 0.00 42.58 4.02
2270 2431 2.690786 TCTTGGTTAAACCGATGGTCG 58.309 47.619 0.00 0.00 42.58 4.79
2271 2432 2.299582 TCTTGGTTAAACCGATGGTCGA 59.700 45.455 0.22 0.00 43.74 4.20
2272 2433 2.835580 TGGTTAAACCGATGGTCGAA 57.164 45.000 0.22 0.00 43.74 3.71
2273 2434 2.415776 TGGTTAAACCGATGGTCGAAC 58.584 47.619 0.00 0.00 43.74 3.95
2274 2435 2.037511 TGGTTAAACCGATGGTCGAACT 59.962 45.455 0.33 0.00 43.74 3.01
2275 2436 3.069289 GGTTAAACCGATGGTCGAACTT 58.931 45.455 0.33 0.00 43.74 2.66
2276 2437 3.120442 GGTTAAACCGATGGTCGAACTTG 60.120 47.826 0.33 0.00 43.74 3.16
2277 2438 2.536761 AAACCGATGGTCGAACTTGA 57.463 45.000 0.33 0.00 43.74 3.02
2278 2439 2.762535 AACCGATGGTCGAACTTGAT 57.237 45.000 0.33 0.00 43.74 2.57
2279 2440 2.762535 ACCGATGGTCGAACTTGATT 57.237 45.000 0.33 0.00 43.74 2.57
2280 2441 2.618053 ACCGATGGTCGAACTTGATTC 58.382 47.619 0.33 0.00 43.74 2.52
2281 2442 1.933853 CCGATGGTCGAACTTGATTCC 59.066 52.381 0.33 0.00 43.74 3.01
2282 2443 1.933853 CGATGGTCGAACTTGATTCCC 59.066 52.381 0.33 0.00 43.74 3.97
2283 2444 2.676750 CGATGGTCGAACTTGATTCCCA 60.677 50.000 0.33 0.00 43.74 4.37
2284 2445 2.940994 TGGTCGAACTTGATTCCCAA 57.059 45.000 0.33 0.00 33.26 4.12
2285 2446 3.216187 TGGTCGAACTTGATTCCCAAA 57.784 42.857 0.33 0.00 33.76 3.28
2286 2447 3.556999 TGGTCGAACTTGATTCCCAAAA 58.443 40.909 0.33 0.00 33.76 2.44
2287 2448 4.148838 TGGTCGAACTTGATTCCCAAAAT 58.851 39.130 0.33 0.00 33.76 1.82
2288 2449 4.022416 TGGTCGAACTTGATTCCCAAAATG 60.022 41.667 0.33 0.00 33.76 2.32
2289 2450 3.920412 GTCGAACTTGATTCCCAAAATGC 59.080 43.478 0.00 0.00 33.76 3.56
2290 2451 2.916716 CGAACTTGATTCCCAAAATGCG 59.083 45.455 0.00 0.00 33.76 4.73
2291 2452 3.611530 CGAACTTGATTCCCAAAATGCGT 60.612 43.478 0.00 0.00 33.76 5.24
2292 2453 3.302365 ACTTGATTCCCAAAATGCGTG 57.698 42.857 0.00 0.00 33.76 5.34
2293 2454 2.627699 ACTTGATTCCCAAAATGCGTGT 59.372 40.909 0.00 0.00 33.76 4.49
2294 2455 2.721274 TGATTCCCAAAATGCGTGTG 57.279 45.000 0.00 0.00 0.00 3.82
2295 2456 1.336702 TGATTCCCAAAATGCGTGTGC 60.337 47.619 0.00 0.00 43.20 4.57
2305 2466 4.178861 GCGTGTGCGTCCTATTCA 57.821 55.556 0.00 0.00 40.81 2.57
2306 2467 1.708027 GCGTGTGCGTCCTATTCAC 59.292 57.895 0.00 0.00 40.81 3.18
2307 2468 1.693083 GCGTGTGCGTCCTATTCACC 61.693 60.000 0.00 0.00 40.81 4.02
2308 2469 0.108804 CGTGTGCGTCCTATTCACCT 60.109 55.000 0.00 0.00 0.00 4.00
2309 2470 1.641577 GTGTGCGTCCTATTCACCTC 58.358 55.000 0.00 0.00 0.00 3.85
2310 2471 0.172578 TGTGCGTCCTATTCACCTCG 59.827 55.000 0.00 0.00 0.00 4.63
2311 2472 0.454600 GTGCGTCCTATTCACCTCGA 59.545 55.000 0.00 0.00 0.00 4.04
2312 2473 1.135199 GTGCGTCCTATTCACCTCGAA 60.135 52.381 0.00 0.00 38.22 3.71
2313 2474 1.135199 TGCGTCCTATTCACCTCGAAC 60.135 52.381 0.00 0.00 36.12 3.95
2314 2475 1.823828 CGTCCTATTCACCTCGAACG 58.176 55.000 0.00 0.00 36.12 3.95
2315 2476 1.533338 CGTCCTATTCACCTCGAACGG 60.533 57.143 0.00 0.00 36.12 4.44
2316 2477 1.108776 TCCTATTCACCTCGAACGGG 58.891 55.000 0.00 0.00 36.12 5.28
2317 2478 0.104304 CCTATTCACCTCGAACGGGG 59.896 60.000 11.78 11.78 42.74 5.73
2318 2479 0.104304 CTATTCACCTCGAACGGGGG 59.896 60.000 17.47 10.92 40.94 5.40
2319 2480 0.324552 TATTCACCTCGAACGGGGGA 60.325 55.000 17.47 9.84 40.94 4.81
2320 2481 1.614241 ATTCACCTCGAACGGGGGAG 61.614 60.000 17.47 9.43 40.94 4.30
2321 2482 2.995574 CACCTCGAACGGGGGAGT 60.996 66.667 17.47 0.00 40.94 3.85
2322 2483 1.679977 CACCTCGAACGGGGGAGTA 60.680 63.158 17.47 0.00 40.94 2.59
2323 2484 1.680314 ACCTCGAACGGGGGAGTAC 60.680 63.158 17.47 0.00 40.94 2.73
2324 2485 2.421399 CCTCGAACGGGGGAGTACC 61.421 68.421 5.09 0.00 39.11 3.34
2325 2486 1.679977 CTCGAACGGGGGAGTACCA 60.680 63.158 0.00 0.00 42.91 3.25
2326 2487 1.941999 CTCGAACGGGGGAGTACCAC 61.942 65.000 0.00 0.00 42.91 4.16
2327 2488 1.980772 CGAACGGGGGAGTACCACT 60.981 63.158 0.00 0.00 42.11 4.00
2328 2489 0.680921 CGAACGGGGGAGTACCACTA 60.681 60.000 0.00 0.00 42.11 2.74
2329 2490 1.560505 GAACGGGGGAGTACCACTAA 58.439 55.000 0.00 0.00 42.11 2.24
2330 2491 2.113807 GAACGGGGGAGTACCACTAAT 58.886 52.381 0.00 0.00 42.11 1.73
2331 2492 2.259014 ACGGGGGAGTACCACTAATT 57.741 50.000 0.00 0.00 42.11 1.40
2332 2493 3.403228 ACGGGGGAGTACCACTAATTA 57.597 47.619 0.00 0.00 42.11 1.40
2333 2494 3.932601 ACGGGGGAGTACCACTAATTAT 58.067 45.455 0.00 0.00 42.11 1.28
2334 2495 5.078683 ACGGGGGAGTACCACTAATTATA 57.921 43.478 0.00 0.00 42.11 0.98
2335 2496 5.658474 ACGGGGGAGTACCACTAATTATAT 58.342 41.667 0.00 0.00 42.11 0.86
2336 2497 6.086775 ACGGGGGAGTACCACTAATTATATT 58.913 40.000 0.00 0.00 42.11 1.28
2337 2498 6.559921 ACGGGGGAGTACCACTAATTATATTT 59.440 38.462 0.00 0.00 42.11 1.40
2338 2499 7.101700 CGGGGGAGTACCACTAATTATATTTC 58.898 42.308 0.00 0.00 42.11 2.17
2339 2500 7.038516 CGGGGGAGTACCACTAATTATATTTCT 60.039 40.741 0.00 0.00 42.11 2.52
2340 2501 8.319881 GGGGGAGTACCACTAATTATATTTCTC 58.680 40.741 0.00 0.00 40.60 2.87
2341 2502 8.033626 GGGGAGTACCACTAATTATATTTCTCG 58.966 40.741 0.00 0.00 42.91 4.04
2342 2503 8.033626 GGGAGTACCACTAATTATATTTCTCGG 58.966 40.741 0.00 0.00 39.85 4.63
2343 2504 8.583296 GGAGTACCACTAATTATATTTCTCGGT 58.417 37.037 0.00 0.00 35.97 4.69
2344 2505 9.623350 GAGTACCACTAATTATATTTCTCGGTC 57.377 37.037 0.00 0.00 0.00 4.79
2345 2506 8.295288 AGTACCACTAATTATATTTCTCGGTCG 58.705 37.037 0.00 0.00 0.00 4.79
2346 2507 5.924825 ACCACTAATTATATTTCTCGGTCGC 59.075 40.000 0.00 0.00 0.00 5.19
2347 2508 5.060569 CCACTAATTATATTTCTCGGTCGCG 59.939 44.000 0.00 0.00 0.00 5.87
2348 2509 5.060569 CACTAATTATATTTCTCGGTCGCGG 59.939 44.000 6.13 0.00 0.00 6.46
2349 2510 3.928727 ATTATATTTCTCGGTCGCGGA 57.071 42.857 6.13 0.00 0.00 5.54
2350 2511 3.713858 TTATATTTCTCGGTCGCGGAA 57.286 42.857 6.13 0.00 0.00 4.30
2351 2512 2.589798 ATATTTCTCGGTCGCGGAAA 57.410 45.000 6.13 8.18 34.22 3.13
2352 2513 2.589798 TATTTCTCGGTCGCGGAAAT 57.410 45.000 19.33 19.33 40.97 2.17
2353 2514 2.589798 ATTTCTCGGTCGCGGAAATA 57.410 45.000 15.59 0.00 37.74 1.40
2354 2515 2.589798 TTTCTCGGTCGCGGAAATAT 57.410 45.000 6.13 0.00 0.00 1.28
2355 2516 2.589798 TTCTCGGTCGCGGAAATATT 57.410 45.000 6.13 0.00 0.00 1.28
2356 2517 1.847818 TCTCGGTCGCGGAAATATTG 58.152 50.000 6.13 0.00 0.00 1.90
2357 2518 1.406180 TCTCGGTCGCGGAAATATTGA 59.594 47.619 6.13 0.00 0.00 2.57
2358 2519 1.521423 CTCGGTCGCGGAAATATTGAC 59.479 52.381 6.13 0.00 0.00 3.18
2359 2520 0.580104 CGGTCGCGGAAATATTGACC 59.420 55.000 6.13 10.50 44.43 4.02
2360 2521 1.658994 GGTCGCGGAAATATTGACCA 58.341 50.000 6.13 0.00 46.55 4.02
2361 2522 2.011222 GGTCGCGGAAATATTGACCAA 58.989 47.619 6.13 0.00 46.55 3.67
2362 2523 2.031683 GGTCGCGGAAATATTGACCAAG 59.968 50.000 6.13 6.99 46.55 3.61
2363 2524 2.933906 GTCGCGGAAATATTGACCAAGA 59.066 45.455 6.13 7.21 0.00 3.02
2364 2525 3.372822 GTCGCGGAAATATTGACCAAGAA 59.627 43.478 6.13 0.00 0.00 2.52
2365 2526 3.372822 TCGCGGAAATATTGACCAAGAAC 59.627 43.478 6.13 0.00 0.00 3.01
2366 2527 3.126171 CGCGGAAATATTGACCAAGAACA 59.874 43.478 0.00 0.00 0.00 3.18
2367 2528 4.201910 CGCGGAAATATTGACCAAGAACAT 60.202 41.667 0.00 0.00 0.00 2.71
2368 2529 5.036737 GCGGAAATATTGACCAAGAACATG 58.963 41.667 11.00 0.00 0.00 3.21
2369 2530 5.163663 GCGGAAATATTGACCAAGAACATGA 60.164 40.000 0.00 0.00 0.00 3.07
2370 2531 6.624861 GCGGAAATATTGACCAAGAACATGAA 60.625 38.462 0.00 0.00 0.00 2.57
2371 2532 7.483307 CGGAAATATTGACCAAGAACATGAAT 58.517 34.615 0.00 0.00 0.00 2.57
2372 2533 8.620416 CGGAAATATTGACCAAGAACATGAATA 58.380 33.333 0.00 0.00 0.00 1.75
2404 2565 9.884465 AAAATCTCTTCTTAGTGATTTCAAACG 57.116 29.630 12.74 0.00 46.20 3.60
2405 2566 8.608844 AATCTCTTCTTAGTGATTTCAAACGT 57.391 30.769 0.00 0.00 40.08 3.99
2406 2567 8.608844 ATCTCTTCTTAGTGATTTCAAACGTT 57.391 30.769 0.00 0.00 32.18 3.99
2407 2568 7.851508 TCTCTTCTTAGTGATTTCAAACGTTG 58.148 34.615 0.00 0.00 0.00 4.10
2408 2569 7.709182 TCTCTTCTTAGTGATTTCAAACGTTGA 59.291 33.333 0.00 0.00 38.04 3.18
2409 2570 7.627340 TCTTCTTAGTGATTTCAAACGTTGAC 58.373 34.615 0.00 0.00 39.87 3.18
2410 2571 6.295039 TCTTAGTGATTTCAAACGTTGACC 57.705 37.500 0.00 0.00 39.87 4.02
2411 2572 6.053005 TCTTAGTGATTTCAAACGTTGACCT 58.947 36.000 0.00 0.00 39.87 3.85
2412 2573 7.211573 TCTTAGTGATTTCAAACGTTGACCTA 58.788 34.615 0.00 0.00 39.87 3.08
2413 2574 7.711772 TCTTAGTGATTTCAAACGTTGACCTAA 59.288 33.333 0.00 0.27 39.87 2.69
2414 2575 6.687081 AGTGATTTCAAACGTTGACCTAAA 57.313 33.333 0.00 0.00 39.87 1.85
2415 2576 7.272037 AGTGATTTCAAACGTTGACCTAAAT 57.728 32.000 0.00 4.09 39.87 1.40
2416 2577 8.385898 AGTGATTTCAAACGTTGACCTAAATA 57.614 30.769 0.00 0.00 39.87 1.40
2417 2578 9.010029 AGTGATTTCAAACGTTGACCTAAATAT 57.990 29.630 0.00 0.00 39.87 1.28
2418 2579 9.061610 GTGATTTCAAACGTTGACCTAAATATG 57.938 33.333 0.00 0.00 39.87 1.78
2419 2580 8.788806 TGATTTCAAACGTTGACCTAAATATGT 58.211 29.630 0.00 0.00 39.87 2.29
2420 2581 9.620660 GATTTCAAACGTTGACCTAAATATGTT 57.379 29.630 0.00 0.00 39.87 2.71
2421 2582 9.974980 ATTTCAAACGTTGACCTAAATATGTTT 57.025 25.926 0.00 0.00 39.87 2.83
2422 2583 8.789881 TTCAAACGTTGACCTAAATATGTTTG 57.210 30.769 0.00 0.00 43.66 2.93
2423 2584 6.858993 TCAAACGTTGACCTAAATATGTTTGC 59.141 34.615 0.00 0.00 42.63 3.68
2424 2585 5.305139 ACGTTGACCTAAATATGTTTGCC 57.695 39.130 0.00 0.00 0.00 4.52
2425 2586 4.157105 ACGTTGACCTAAATATGTTTGCCC 59.843 41.667 0.00 0.00 0.00 5.36
2426 2587 4.439563 CGTTGACCTAAATATGTTTGCCCC 60.440 45.833 0.00 0.00 0.00 5.80
2427 2588 4.323569 TGACCTAAATATGTTTGCCCCA 57.676 40.909 0.00 0.00 0.00 4.96
2428 2589 4.678256 TGACCTAAATATGTTTGCCCCAA 58.322 39.130 0.00 0.00 0.00 4.12
2429 2590 5.087323 TGACCTAAATATGTTTGCCCCAAA 58.913 37.500 0.00 0.00 0.00 3.28
2430 2591 5.544176 TGACCTAAATATGTTTGCCCCAAAA 59.456 36.000 0.00 0.00 35.03 2.44
2431 2592 6.214412 TGACCTAAATATGTTTGCCCCAAAAT 59.786 34.615 0.00 0.00 35.03 1.82
2432 2593 7.026697 ACCTAAATATGTTTGCCCCAAAATT 57.973 32.000 0.00 0.00 35.03 1.82
2433 2594 7.109501 ACCTAAATATGTTTGCCCCAAAATTC 58.890 34.615 0.00 0.00 35.03 2.17
2434 2595 6.542005 CCTAAATATGTTTGCCCCAAAATTCC 59.458 38.462 0.00 0.00 35.03 3.01
2435 2596 5.511386 AATATGTTTGCCCCAAAATTCCA 57.489 34.783 0.00 0.00 35.03 3.53
2436 2597 2.926778 TGTTTGCCCCAAAATTCCAG 57.073 45.000 0.00 0.00 35.03 3.86
2437 2598 2.402564 TGTTTGCCCCAAAATTCCAGA 58.597 42.857 0.00 0.00 35.03 3.86
2438 2599 2.103941 TGTTTGCCCCAAAATTCCAGAC 59.896 45.455 0.00 0.00 35.03 3.51
2439 2600 1.347062 TTGCCCCAAAATTCCAGACC 58.653 50.000 0.00 0.00 0.00 3.85
2440 2601 0.189574 TGCCCCAAAATTCCAGACCA 59.810 50.000 0.00 0.00 0.00 4.02
2441 2602 1.347062 GCCCCAAAATTCCAGACCAA 58.653 50.000 0.00 0.00 0.00 3.67
2442 2603 1.696884 GCCCCAAAATTCCAGACCAAA 59.303 47.619 0.00 0.00 0.00 3.28
2443 2604 2.549992 GCCCCAAAATTCCAGACCAAAC 60.550 50.000 0.00 0.00 0.00 2.93
2444 2605 2.288763 CCCCAAAATTCCAGACCAAACG 60.289 50.000 0.00 0.00 0.00 3.60
2445 2606 2.288763 CCCAAAATTCCAGACCAAACGG 60.289 50.000 0.00 0.00 0.00 4.44
2446 2607 2.625790 CCAAAATTCCAGACCAAACGGA 59.374 45.455 0.00 0.00 0.00 4.69
2447 2608 3.068873 CCAAAATTCCAGACCAAACGGAA 59.931 43.478 0.00 0.00 42.77 4.30
2448 2609 4.442192 CCAAAATTCCAGACCAAACGGAAA 60.442 41.667 0.00 0.00 41.93 3.13
2449 2610 4.316205 AAATTCCAGACCAAACGGAAAC 57.684 40.909 0.00 0.00 41.93 2.78
2450 2611 2.421751 TTCCAGACCAAACGGAAACA 57.578 45.000 0.00 0.00 35.89 2.83
2451 2612 1.670791 TCCAGACCAAACGGAAACAC 58.329 50.000 0.00 0.00 0.00 3.32
2452 2613 1.065345 TCCAGACCAAACGGAAACACA 60.065 47.619 0.00 0.00 0.00 3.72
2453 2614 1.746220 CCAGACCAAACGGAAACACAA 59.254 47.619 0.00 0.00 0.00 3.33
2454 2615 2.360801 CCAGACCAAACGGAAACACAAT 59.639 45.455 0.00 0.00 0.00 2.71
2455 2616 3.181480 CCAGACCAAACGGAAACACAATT 60.181 43.478 0.00 0.00 0.00 2.32
2456 2617 4.036971 CCAGACCAAACGGAAACACAATTA 59.963 41.667 0.00 0.00 0.00 1.40
2457 2618 5.450688 CCAGACCAAACGGAAACACAATTAA 60.451 40.000 0.00 0.00 0.00 1.40
2458 2619 6.037098 CAGACCAAACGGAAACACAATTAAA 58.963 36.000 0.00 0.00 0.00 1.52
2459 2620 6.531948 CAGACCAAACGGAAACACAATTAAAA 59.468 34.615 0.00 0.00 0.00 1.52
2460 2621 7.063544 CAGACCAAACGGAAACACAATTAAAAA 59.936 33.333 0.00 0.00 0.00 1.94
2461 2622 7.766738 AGACCAAACGGAAACACAATTAAAAAT 59.233 29.630 0.00 0.00 0.00 1.82
2462 2623 8.943909 ACCAAACGGAAACACAATTAAAAATA 57.056 26.923 0.00 0.00 0.00 1.40
2463 2624 9.549078 ACCAAACGGAAACACAATTAAAAATAT 57.451 25.926 0.00 0.00 0.00 1.28
2491 2652 8.430801 TCACAATCACACTTTTAAATTTTGGG 57.569 30.769 0.00 0.00 0.00 4.12
2492 2653 8.043710 TCACAATCACACTTTTAAATTTTGGGT 58.956 29.630 0.00 0.00 0.00 4.51
2493 2654 9.319143 CACAATCACACTTTTAAATTTTGGGTA 57.681 29.630 0.00 0.00 0.00 3.69
2494 2655 9.320352 ACAATCACACTTTTAAATTTTGGGTAC 57.680 29.630 0.00 0.00 0.00 3.34
2495 2656 9.319143 CAATCACACTTTTAAATTTTGGGTACA 57.681 29.630 0.00 0.00 0.00 2.90
2498 2659 9.892130 TCACACTTTTAAATTTTGGGTACATTT 57.108 25.926 0.00 0.00 0.00 2.32
2559 2720 7.878547 ACAATTTGTTTGGGTTGATTTGATT 57.121 28.000 0.00 0.00 39.80 2.57
2560 2721 8.291191 ACAATTTGTTTGGGTTGATTTGATTT 57.709 26.923 0.00 0.00 39.80 2.17
2561 2722 8.747471 ACAATTTGTTTGGGTTGATTTGATTTT 58.253 25.926 0.00 0.00 39.80 1.82
2562 2723 9.583765 CAATTTGTTTGGGTTGATTTGATTTTT 57.416 25.926 0.00 0.00 0.00 1.94
2639 2800 9.582431 TGTTGTACTGTAATACATAGAAGCTTC 57.418 33.333 19.11 19.11 35.04 3.86
2640 2801 9.582431 GTTGTACTGTAATACATAGAAGCTTCA 57.418 33.333 27.57 14.20 35.04 3.02
2645 2806 9.672673 ACTGTAATACATAGAAGCTTCATTTGT 57.327 29.630 27.57 25.15 0.00 2.83
2646 2807 9.926751 CTGTAATACATAGAAGCTTCATTTGTG 57.073 33.333 27.57 17.20 0.00 3.33
2647 2808 8.892723 TGTAATACATAGAAGCTTCATTTGTGG 58.107 33.333 27.57 11.87 0.00 4.17
2648 2809 4.708726 ACATAGAAGCTTCATTTGTGGC 57.291 40.909 27.57 0.00 0.00 5.01
2649 2810 4.081406 ACATAGAAGCTTCATTTGTGGCA 58.919 39.130 27.57 2.33 0.00 4.92
2650 2811 4.157289 ACATAGAAGCTTCATTTGTGGCAG 59.843 41.667 27.57 8.00 0.00 4.85
2651 2812 2.867624 AGAAGCTTCATTTGTGGCAGA 58.132 42.857 27.57 0.00 0.00 4.26
2652 2813 3.225104 AGAAGCTTCATTTGTGGCAGAA 58.775 40.909 27.57 0.00 0.00 3.02
2653 2814 3.638160 AGAAGCTTCATTTGTGGCAGAAA 59.362 39.130 27.57 12.50 0.00 2.52
2654 2815 4.099881 AGAAGCTTCATTTGTGGCAGAAAA 59.900 37.500 27.57 5.84 0.00 2.29
2655 2816 4.405116 AGCTTCATTTGTGGCAGAAAAA 57.595 36.364 14.12 4.15 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
399 406 2.135933 GTCGAACTGAACCAGAACCAG 58.864 52.381 0.45 0.00 35.18 4.00
419 426 8.596380 GTTTATCGGAGAATGAAGTTTCTACAG 58.404 37.037 0.00 0.00 43.58 2.74
484 491 7.868415 GGCAGATACAATTAACTGGAGTACTAG 59.132 40.741 0.00 0.00 30.52 2.57
560 569 2.416547 CACGATGACAAAGGCTACCAAG 59.583 50.000 0.00 0.00 0.00 3.61
561 570 2.422597 CACGATGACAAAGGCTACCAA 58.577 47.619 0.00 0.00 0.00 3.67
563 572 0.727398 GCACGATGACAAAGGCTACC 59.273 55.000 0.00 0.00 0.00 3.18
565 574 0.613260 AGGCACGATGACAAAGGCTA 59.387 50.000 0.00 0.00 32.99 3.93
566 575 0.674895 GAGGCACGATGACAAAGGCT 60.675 55.000 0.00 0.00 37.85 4.58
567 576 0.674895 AGAGGCACGATGACAAAGGC 60.675 55.000 0.00 0.00 0.00 4.35
639 650 1.425428 GGTCTTTTGGCGCGAGATG 59.575 57.895 12.10 0.00 0.00 2.90
658 669 0.391130 TGCGGAGATACTTGTGCCAC 60.391 55.000 0.00 0.00 0.00 5.01
659 670 0.391130 GTGCGGAGATACTTGTGCCA 60.391 55.000 0.00 0.00 0.00 4.92
774 811 2.970639 CTGGGACACGACGTGGAT 59.029 61.111 29.86 11.86 37.94 3.41
803 840 3.551551 GTGAACGTGTAGAAATTGTGCC 58.448 45.455 0.00 0.00 0.00 5.01
810 847 1.493772 CAGCCGTGAACGTGTAGAAA 58.506 50.000 1.75 0.00 37.74 2.52
1086 1137 3.062466 CTGACGAGGAGGGTGCGA 61.062 66.667 0.00 0.00 0.00 5.10
1183 1251 2.820197 AGAGCATCGTGAGTCAGTACAA 59.180 45.455 0.00 0.00 42.67 2.41
1208 1276 0.823769 ACTCGATATCCGGCTGCAGA 60.824 55.000 20.43 0.00 39.14 4.26
1435 1527 4.554363 CGGCCTGGTCGAGTAGCG 62.554 72.222 17.19 0.00 42.69 4.26
1571 1663 1.141019 GTTCCATAGCTCGGCGTCA 59.859 57.895 6.85 0.00 0.00 4.35
1730 1822 3.199508 AGAGTCCGTAGTGCTCCTAGTTA 59.800 47.826 0.00 0.00 0.00 2.24
1738 1830 0.605860 ACGTCAGAGTCCGTAGTGCT 60.606 55.000 0.00 0.00 35.16 4.40
1739 1831 0.240411 AACGTCAGAGTCCGTAGTGC 59.760 55.000 0.00 0.00 36.04 4.40
1740 1832 1.805345 AGAACGTCAGAGTCCGTAGTG 59.195 52.381 0.00 0.00 36.04 2.74
1782 1940 2.618816 GCTCCAGGACATCATGACCAAA 60.619 50.000 8.95 0.00 34.63 3.28
1788 1946 1.764723 TGTAGGCTCCAGGACATCATG 59.235 52.381 0.00 0.00 0.00 3.07
1797 1955 4.825546 CTGCATTAATTGTAGGCTCCAG 57.174 45.455 0.00 0.00 34.68 3.86
1829 1987 4.716784 AGAATGGGAGTACTAGCATGAACA 59.283 41.667 0.00 0.00 0.00 3.18
1840 1998 4.113354 CAAGCGTCTTAGAATGGGAGTAC 58.887 47.826 0.00 0.00 0.00 2.73
1907 2068 5.454045 GCCCTGTAAATTAAGAGAGAGGGAG 60.454 48.000 15.83 0.00 41.40 4.30
1908 2069 4.409247 GCCCTGTAAATTAAGAGAGAGGGA 59.591 45.833 15.83 0.00 41.40 4.20
1909 2070 4.709250 GCCCTGTAAATTAAGAGAGAGGG 58.291 47.826 9.88 9.88 41.74 4.30
1910 2071 4.141914 ACGCCCTGTAAATTAAGAGAGAGG 60.142 45.833 0.00 0.00 0.00 3.69
1911 2072 4.806247 CACGCCCTGTAAATTAAGAGAGAG 59.194 45.833 0.00 0.00 0.00 3.20
1912 2073 4.755411 CACGCCCTGTAAATTAAGAGAGA 58.245 43.478 0.00 0.00 0.00 3.10
1913 2074 3.309954 GCACGCCCTGTAAATTAAGAGAG 59.690 47.826 0.00 0.00 0.00 3.20
1914 2075 3.267483 GCACGCCCTGTAAATTAAGAGA 58.733 45.455 0.00 0.00 0.00 3.10
1915 2076 2.030457 CGCACGCCCTGTAAATTAAGAG 59.970 50.000 0.00 0.00 0.00 2.85
1916 2077 2.004017 CGCACGCCCTGTAAATTAAGA 58.996 47.619 0.00 0.00 0.00 2.10
1917 2078 1.531058 GCGCACGCCCTGTAAATTAAG 60.531 52.381 0.30 0.00 34.56 1.85
1918 2079 0.448593 GCGCACGCCCTGTAAATTAA 59.551 50.000 0.30 0.00 34.56 1.40
1919 2080 1.697772 CGCGCACGCCCTGTAAATTA 61.698 55.000 8.75 0.00 37.98 1.40
1920 2081 2.874751 GCGCACGCCCTGTAAATT 59.125 55.556 0.30 0.00 34.56 1.82
1921 2082 2.839043 TACGCGCACGCCCTGTAAAT 62.839 55.000 5.73 0.00 45.53 1.40
1922 2083 2.839043 ATACGCGCACGCCCTGTAAA 62.839 55.000 5.73 0.00 45.53 2.01
1923 2084 3.359515 ATACGCGCACGCCCTGTAA 62.360 57.895 5.73 0.00 45.53 2.41
1924 2085 3.761445 GATACGCGCACGCCCTGTA 62.761 63.158 5.73 6.59 45.53 2.74
1929 2090 4.274700 TAGGGATACGCGCACGCC 62.275 66.667 5.73 2.11 45.53 5.68
1930 2091 2.729862 CTAGGGATACGCGCACGC 60.730 66.667 5.73 4.64 45.53 5.34
1932 2093 1.007618 GACCTAGGGATACGCGCAC 60.008 63.158 14.81 0.00 37.60 5.34
1933 2094 2.549198 CGACCTAGGGATACGCGCA 61.549 63.158 14.81 0.00 37.60 6.09
1934 2095 2.254651 CGACCTAGGGATACGCGC 59.745 66.667 14.81 0.00 37.60 6.86
1935 2096 1.162181 TGACGACCTAGGGATACGCG 61.162 60.000 14.81 3.53 37.60 6.01
1936 2097 0.592148 CTGACGACCTAGGGATACGC 59.408 60.000 14.81 9.66 37.60 4.42
1937 2098 1.964552 ACTGACGACCTAGGGATACG 58.035 55.000 14.81 14.81 37.60 3.06
1938 2099 3.698040 TCAAACTGACGACCTAGGGATAC 59.302 47.826 14.81 2.61 0.00 2.24
1939 2100 3.698040 GTCAAACTGACGACCTAGGGATA 59.302 47.826 14.81 0.00 37.67 2.59
1940 2101 2.496470 GTCAAACTGACGACCTAGGGAT 59.504 50.000 14.81 0.00 37.67 3.85
1941 2102 1.891150 GTCAAACTGACGACCTAGGGA 59.109 52.381 14.81 0.00 37.67 4.20
1942 2103 2.365408 GTCAAACTGACGACCTAGGG 57.635 55.000 14.81 0.00 37.67 3.53
2003 2164 9.450807 CGTTTGAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
2004 2165 8.836413 TCGTTTGAAAATAGAACATCTGAAGTT 58.164 29.630 0.00 0.00 0.00 2.66
2005 2166 8.378172 TCGTTTGAAAATAGAACATCTGAAGT 57.622 30.769 0.00 0.00 0.00 3.01
2055 2216 9.317827 AGCTTGCCAATTTTATCATCCTAATAT 57.682 29.630 0.00 0.00 0.00 1.28
2056 2217 8.710749 AGCTTGCCAATTTTATCATCCTAATA 57.289 30.769 0.00 0.00 0.00 0.98
2057 2218 7.607615 AGCTTGCCAATTTTATCATCCTAAT 57.392 32.000 0.00 0.00 0.00 1.73
2058 2219 7.998383 TCTAGCTTGCCAATTTTATCATCCTAA 59.002 33.333 0.00 0.00 0.00 2.69
2059 2220 7.517320 TCTAGCTTGCCAATTTTATCATCCTA 58.483 34.615 0.00 0.00 0.00 2.94
2060 2221 6.367983 TCTAGCTTGCCAATTTTATCATCCT 58.632 36.000 0.00 0.00 0.00 3.24
2061 2222 6.639632 TCTAGCTTGCCAATTTTATCATCC 57.360 37.500 0.00 0.00 0.00 3.51
2064 2225 8.935844 CGTATATCTAGCTTGCCAATTTTATCA 58.064 33.333 0.00 0.00 0.00 2.15
2065 2226 7.905493 GCGTATATCTAGCTTGCCAATTTTATC 59.095 37.037 0.00 0.00 0.00 1.75
2066 2227 7.413000 CGCGTATATCTAGCTTGCCAATTTTAT 60.413 37.037 0.00 0.00 0.00 1.40
2067 2228 6.128661 CGCGTATATCTAGCTTGCCAATTTTA 60.129 38.462 0.00 0.00 0.00 1.52
2068 2229 5.334105 CGCGTATATCTAGCTTGCCAATTTT 60.334 40.000 0.00 0.00 0.00 1.82
2069 2230 4.152402 CGCGTATATCTAGCTTGCCAATTT 59.848 41.667 0.00 0.00 0.00 1.82
2070 2231 3.679980 CGCGTATATCTAGCTTGCCAATT 59.320 43.478 0.00 0.00 0.00 2.32
2071 2232 3.254060 CGCGTATATCTAGCTTGCCAAT 58.746 45.455 0.00 0.00 0.00 3.16
2072 2233 2.035449 ACGCGTATATCTAGCTTGCCAA 59.965 45.455 11.67 0.00 0.00 4.52
2073 2234 1.611977 ACGCGTATATCTAGCTTGCCA 59.388 47.619 11.67 0.00 0.00 4.92
2074 2235 2.349297 ACGCGTATATCTAGCTTGCC 57.651 50.000 11.67 0.00 0.00 4.52
2075 2236 4.496183 GTCATACGCGTATATCTAGCTTGC 59.504 45.833 29.79 9.67 0.00 4.01
2076 2237 5.870444 AGTCATACGCGTATATCTAGCTTG 58.130 41.667 29.79 16.60 0.00 4.01
2077 2238 6.072618 ACAAGTCATACGCGTATATCTAGCTT 60.073 38.462 29.79 21.31 0.00 3.74
2078 2239 5.411977 ACAAGTCATACGCGTATATCTAGCT 59.588 40.000 29.79 17.56 0.00 3.32
2079 2240 5.629097 ACAAGTCATACGCGTATATCTAGC 58.371 41.667 29.79 15.87 0.00 3.42
2080 2241 9.048922 GTTTACAAGTCATACGCGTATATCTAG 57.951 37.037 29.79 20.92 0.00 2.43
2081 2242 8.777413 AGTTTACAAGTCATACGCGTATATCTA 58.223 33.333 29.79 13.85 0.00 1.98
2082 2243 7.590322 CAGTTTACAAGTCATACGCGTATATCT 59.410 37.037 29.79 24.92 0.00 1.98
2083 2244 7.588854 TCAGTTTACAAGTCATACGCGTATATC 59.411 37.037 29.79 23.34 0.00 1.63
2084 2245 7.420002 TCAGTTTACAAGTCATACGCGTATAT 58.580 34.615 29.79 16.64 0.00 0.86
2085 2246 6.784176 TCAGTTTACAAGTCATACGCGTATA 58.216 36.000 29.79 16.05 0.00 1.47
2086 2247 5.643664 TCAGTTTACAAGTCATACGCGTAT 58.356 37.500 25.54 25.54 0.00 3.06
2087 2248 5.045668 TCAGTTTACAAGTCATACGCGTA 57.954 39.130 22.94 22.94 0.00 4.42
2088 2249 3.904571 TCAGTTTACAAGTCATACGCGT 58.095 40.909 19.17 19.17 0.00 6.01
2089 2250 4.896562 TTCAGTTTACAAGTCATACGCG 57.103 40.909 3.53 3.53 0.00 6.01
2090 2251 5.070862 CGTTTCAGTTTACAAGTCATACGC 58.929 41.667 0.00 0.00 0.00 4.42
2091 2252 5.403166 TCCGTTTCAGTTTACAAGTCATACG 59.597 40.000 0.00 0.00 0.00 3.06
2092 2253 6.128634 CCTCCGTTTCAGTTTACAAGTCATAC 60.129 42.308 0.00 0.00 0.00 2.39
2093 2254 5.929992 CCTCCGTTTCAGTTTACAAGTCATA 59.070 40.000 0.00 0.00 0.00 2.15
2094 2255 4.755123 CCTCCGTTTCAGTTTACAAGTCAT 59.245 41.667 0.00 0.00 0.00 3.06
2095 2256 4.124238 CCTCCGTTTCAGTTTACAAGTCA 58.876 43.478 0.00 0.00 0.00 3.41
2096 2257 3.497262 CCCTCCGTTTCAGTTTACAAGTC 59.503 47.826 0.00 0.00 0.00 3.01
2097 2258 3.135167 TCCCTCCGTTTCAGTTTACAAGT 59.865 43.478 0.00 0.00 0.00 3.16
2098 2259 3.735591 TCCCTCCGTTTCAGTTTACAAG 58.264 45.455 0.00 0.00 0.00 3.16
2099 2260 3.135167 ACTCCCTCCGTTTCAGTTTACAA 59.865 43.478 0.00 0.00 0.00 2.41
2100 2261 2.701951 ACTCCCTCCGTTTCAGTTTACA 59.298 45.455 0.00 0.00 0.00 2.41
2101 2262 3.397849 ACTCCCTCCGTTTCAGTTTAC 57.602 47.619 0.00 0.00 0.00 2.01
2102 2263 8.537728 TTATATACTCCCTCCGTTTCAGTTTA 57.462 34.615 0.00 0.00 0.00 2.01
2103 2264 5.952347 ATATACTCCCTCCGTTTCAGTTT 57.048 39.130 0.00 0.00 0.00 2.66
2104 2265 7.427989 TTTATATACTCCCTCCGTTTCAGTT 57.572 36.000 0.00 0.00 0.00 3.16
2105 2266 7.613551 ATTTATATACTCCCTCCGTTTCAGT 57.386 36.000 0.00 0.00 0.00 3.41
2106 2267 8.904099 AAATTTATATACTCCCTCCGTTTCAG 57.096 34.615 0.00 0.00 0.00 3.02
2107 2268 7.654520 CGAAATTTATATACTCCCTCCGTTTCA 59.345 37.037 0.00 0.00 0.00 2.69
2108 2269 7.117379 CCGAAATTTATATACTCCCTCCGTTTC 59.883 40.741 0.00 0.00 0.00 2.78
2109 2270 6.932960 CCGAAATTTATATACTCCCTCCGTTT 59.067 38.462 0.00 0.00 0.00 3.60
2110 2271 6.461640 CCGAAATTTATATACTCCCTCCGTT 58.538 40.000 0.00 0.00 0.00 4.44
2111 2272 5.046807 CCCGAAATTTATATACTCCCTCCGT 60.047 44.000 0.00 0.00 0.00 4.69
2112 2273 5.186409 TCCCGAAATTTATATACTCCCTCCG 59.814 44.000 0.00 0.00 0.00 4.63
2113 2274 6.212993 AGTCCCGAAATTTATATACTCCCTCC 59.787 42.308 0.00 0.00 0.00 4.30
2114 2275 7.242322 AGTCCCGAAATTTATATACTCCCTC 57.758 40.000 0.00 0.00 0.00 4.30
2115 2276 7.628501 AAGTCCCGAAATTTATATACTCCCT 57.371 36.000 0.00 0.00 0.00 4.20
2116 2277 9.783081 TTTAAGTCCCGAAATTTATATACTCCC 57.217 33.333 0.00 0.00 0.00 4.30
2183 2344 9.575868 TGTGGGTTATGAAGACAAAAGTTATAA 57.424 29.630 0.00 0.00 0.00 0.98
2220 2381 6.151480 GGGAATTAAGTTTGACCATCGGTTTA 59.849 38.462 0.00 0.00 35.25 2.01
2228 2389 7.610580 AGAAAATGGGAATTAAGTTTGACCA 57.389 32.000 0.00 0.00 0.00 4.02
2232 2393 8.675705 AACCAAGAAAATGGGAATTAAGTTTG 57.324 30.769 0.00 0.00 45.18 2.93
2240 2401 5.540719 TCGGTTTAACCAAGAAAATGGGAAT 59.459 36.000 14.97 0.00 45.18 3.01
2241 2402 4.894114 TCGGTTTAACCAAGAAAATGGGAA 59.106 37.500 14.97 0.00 45.18 3.97
2242 2403 4.471548 TCGGTTTAACCAAGAAAATGGGA 58.528 39.130 14.97 0.00 45.18 4.37
2243 2404 4.857509 TCGGTTTAACCAAGAAAATGGG 57.142 40.909 14.97 0.00 45.18 4.00
2244 2405 5.167845 CCATCGGTTTAACCAAGAAAATGG 58.832 41.667 14.97 11.63 46.38 3.16
2245 2406 5.778862 ACCATCGGTTTAACCAAGAAAATG 58.221 37.500 14.97 7.15 38.47 2.32
2246 2407 5.335348 CGACCATCGGTTTAACCAAGAAAAT 60.335 40.000 14.97 0.00 38.47 1.82
2247 2408 4.023878 CGACCATCGGTTTAACCAAGAAAA 60.024 41.667 14.97 0.00 38.47 2.29
2248 2409 3.499157 CGACCATCGGTTTAACCAAGAAA 59.501 43.478 14.97 0.00 38.47 2.52
2249 2410 3.068560 CGACCATCGGTTTAACCAAGAA 58.931 45.455 14.97 0.00 38.47 2.52
2250 2411 2.299582 TCGACCATCGGTTTAACCAAGA 59.700 45.455 14.97 4.60 40.88 3.02
2251 2412 2.690786 TCGACCATCGGTTTAACCAAG 58.309 47.619 14.97 2.94 40.88 3.61
2252 2413 2.807392 GTTCGACCATCGGTTTAACCAA 59.193 45.455 14.97 0.00 40.88 3.67
2253 2414 2.037511 AGTTCGACCATCGGTTTAACCA 59.962 45.455 14.97 1.99 40.88 3.67
2254 2415 2.691927 AGTTCGACCATCGGTTTAACC 58.308 47.619 3.64 3.64 40.88 2.85
2255 2416 3.742369 TCAAGTTCGACCATCGGTTTAAC 59.258 43.478 0.00 0.00 40.88 2.01
2256 2417 3.992643 TCAAGTTCGACCATCGGTTTAA 58.007 40.909 0.00 0.00 40.88 1.52
2257 2418 3.663995 TCAAGTTCGACCATCGGTTTA 57.336 42.857 0.00 0.00 40.88 2.01
2258 2419 2.536761 TCAAGTTCGACCATCGGTTT 57.463 45.000 0.00 0.00 40.88 3.27
2259 2420 2.762535 ATCAAGTTCGACCATCGGTT 57.237 45.000 0.00 0.00 40.88 4.44
2260 2421 2.618053 GAATCAAGTTCGACCATCGGT 58.382 47.619 0.00 0.00 40.88 4.69
2261 2422 1.933853 GGAATCAAGTTCGACCATCGG 59.066 52.381 0.00 0.00 40.88 4.18
2262 2423 1.933853 GGGAATCAAGTTCGACCATCG 59.066 52.381 0.00 0.00 42.10 3.84
2263 2424 2.985896 TGGGAATCAAGTTCGACCATC 58.014 47.619 0.00 0.00 37.73 3.51
2264 2425 3.433306 TTGGGAATCAAGTTCGACCAT 57.567 42.857 0.00 0.00 37.73 3.55
2265 2426 2.940994 TTGGGAATCAAGTTCGACCA 57.059 45.000 0.00 0.00 37.73 4.02
2266 2427 4.485163 CATTTTGGGAATCAAGTTCGACC 58.515 43.478 0.00 0.00 37.73 4.79
2267 2428 3.920412 GCATTTTGGGAATCAAGTTCGAC 59.080 43.478 0.00 0.00 37.73 4.20
2268 2429 3.365868 CGCATTTTGGGAATCAAGTTCGA 60.366 43.478 0.00 0.00 37.73 3.71
2269 2430 2.916716 CGCATTTTGGGAATCAAGTTCG 59.083 45.455 0.00 0.00 37.73 3.95
2270 2431 3.674753 CACGCATTTTGGGAATCAAGTTC 59.325 43.478 0.00 0.00 36.62 3.01
2271 2432 3.069443 ACACGCATTTTGGGAATCAAGTT 59.931 39.130 0.00 0.00 36.62 2.66
2272 2433 2.627699 ACACGCATTTTGGGAATCAAGT 59.372 40.909 0.00 0.00 36.62 3.16
2273 2434 2.988493 CACACGCATTTTGGGAATCAAG 59.012 45.455 0.00 0.00 36.62 3.02
2274 2435 2.865670 GCACACGCATTTTGGGAATCAA 60.866 45.455 0.00 0.00 38.36 2.57
2275 2436 1.336702 GCACACGCATTTTGGGAATCA 60.337 47.619 0.00 0.00 38.36 2.57
2276 2437 1.349234 GCACACGCATTTTGGGAATC 58.651 50.000 0.00 0.00 38.36 2.52
2277 2438 0.388391 CGCACACGCATTTTGGGAAT 60.388 50.000 0.00 0.00 38.40 3.01
2278 2439 1.007964 CGCACACGCATTTTGGGAA 60.008 52.632 0.00 0.00 38.40 3.97
2279 2440 2.123988 GACGCACACGCATTTTGGGA 62.124 55.000 0.00 0.00 45.53 4.37
2280 2441 1.729131 GACGCACACGCATTTTGGG 60.729 57.895 0.00 0.00 45.53 4.12
2281 2442 1.729131 GGACGCACACGCATTTTGG 60.729 57.895 0.00 0.00 45.53 3.28
2282 2443 0.515127 TAGGACGCACACGCATTTTG 59.485 50.000 0.00 0.00 45.53 2.44
2283 2444 1.448985 ATAGGACGCACACGCATTTT 58.551 45.000 0.00 0.00 45.53 1.82
2284 2445 1.396996 GAATAGGACGCACACGCATTT 59.603 47.619 0.00 0.00 45.53 2.32
2285 2446 1.006832 GAATAGGACGCACACGCATT 58.993 50.000 0.00 0.00 45.53 3.56
2286 2447 0.108377 TGAATAGGACGCACACGCAT 60.108 50.000 0.00 0.00 45.53 4.73
2287 2448 1.011968 GTGAATAGGACGCACACGCA 61.012 55.000 0.00 0.00 45.53 5.24
2288 2449 1.693083 GGTGAATAGGACGCACACGC 61.693 60.000 0.00 0.00 45.53 5.34
2290 2451 1.641577 GAGGTGAATAGGACGCACAC 58.358 55.000 0.00 0.00 34.33 3.82
2291 2452 0.172578 CGAGGTGAATAGGACGCACA 59.827 55.000 0.00 0.00 34.33 4.57
2292 2453 0.454600 TCGAGGTGAATAGGACGCAC 59.545 55.000 0.00 0.00 0.00 5.34
2293 2454 1.135199 GTTCGAGGTGAATAGGACGCA 60.135 52.381 0.00 0.00 39.21 5.24
2294 2455 1.557651 GTTCGAGGTGAATAGGACGC 58.442 55.000 0.00 0.00 39.21 5.19
2295 2456 1.533338 CCGTTCGAGGTGAATAGGACG 60.533 57.143 0.00 0.00 39.21 4.79
2296 2457 1.202382 CCCGTTCGAGGTGAATAGGAC 60.202 57.143 0.00 0.00 39.21 3.85
2297 2458 1.108776 CCCGTTCGAGGTGAATAGGA 58.891 55.000 0.00 0.00 39.21 2.94
2298 2459 0.104304 CCCCGTTCGAGGTGAATAGG 59.896 60.000 0.00 0.00 39.21 2.57
2299 2460 0.104304 CCCCCGTTCGAGGTGAATAG 59.896 60.000 0.00 0.00 39.21 1.73
2300 2461 0.324552 TCCCCCGTTCGAGGTGAATA 60.325 55.000 0.00 0.00 39.21 1.75
2301 2462 1.611261 TCCCCCGTTCGAGGTGAAT 60.611 57.895 0.00 0.00 39.21 2.57
2302 2463 2.203669 TCCCCCGTTCGAGGTGAA 60.204 61.111 0.00 0.00 0.00 3.18
2303 2464 2.141011 TACTCCCCCGTTCGAGGTGA 62.141 60.000 9.12 0.00 0.00 4.02
2304 2465 1.679977 TACTCCCCCGTTCGAGGTG 60.680 63.158 0.00 0.00 0.00 4.00
2305 2466 1.680314 GTACTCCCCCGTTCGAGGT 60.680 63.158 0.00 0.00 0.00 3.85
2306 2467 2.421399 GGTACTCCCCCGTTCGAGG 61.421 68.421 0.00 0.00 0.00 4.63
2307 2468 1.679977 TGGTACTCCCCCGTTCGAG 60.680 63.158 0.00 0.00 0.00 4.04
2308 2469 1.978617 GTGGTACTCCCCCGTTCGA 60.979 63.158 0.00 0.00 0.00 3.71
2309 2470 0.680921 TAGTGGTACTCCCCCGTTCG 60.681 60.000 0.00 0.00 0.00 3.95
2310 2471 1.560505 TTAGTGGTACTCCCCCGTTC 58.439 55.000 0.00 0.00 0.00 3.95
2311 2472 2.259014 ATTAGTGGTACTCCCCCGTT 57.741 50.000 0.00 0.00 0.00 4.44
2312 2473 2.259014 AATTAGTGGTACTCCCCCGT 57.741 50.000 0.00 0.00 0.00 5.28
2313 2474 6.616237 AATATAATTAGTGGTACTCCCCCG 57.384 41.667 0.00 0.00 0.00 5.73
2314 2475 8.215954 AGAAATATAATTAGTGGTACTCCCCC 57.784 38.462 0.00 0.00 0.00 5.40
2315 2476 8.033626 CGAGAAATATAATTAGTGGTACTCCCC 58.966 40.741 0.00 0.00 0.00 4.81
2316 2477 8.033626 CCGAGAAATATAATTAGTGGTACTCCC 58.966 40.741 0.00 0.00 0.00 4.30
2317 2478 8.583296 ACCGAGAAATATAATTAGTGGTACTCC 58.417 37.037 0.00 0.00 0.00 3.85
2318 2479 9.623350 GACCGAGAAATATAATTAGTGGTACTC 57.377 37.037 0.00 0.00 0.00 2.59
2319 2480 8.295288 CGACCGAGAAATATAATTAGTGGTACT 58.705 37.037 0.00 0.00 0.00 2.73
2320 2481 7.061557 GCGACCGAGAAATATAATTAGTGGTAC 59.938 40.741 0.00 0.00 0.00 3.34
2321 2482 7.086376 GCGACCGAGAAATATAATTAGTGGTA 58.914 38.462 0.00 0.00 0.00 3.25
2322 2483 5.924825 GCGACCGAGAAATATAATTAGTGGT 59.075 40.000 0.00 0.00 0.00 4.16
2323 2484 5.060569 CGCGACCGAGAAATATAATTAGTGG 59.939 44.000 0.00 0.00 36.29 4.00
2324 2485 5.060569 CCGCGACCGAGAAATATAATTAGTG 59.939 44.000 8.23 0.00 36.29 2.74
2325 2486 5.048504 TCCGCGACCGAGAAATATAATTAGT 60.049 40.000 8.23 0.00 36.29 2.24
2326 2487 5.396484 TCCGCGACCGAGAAATATAATTAG 58.604 41.667 8.23 0.00 36.29 1.73
2327 2488 5.375417 TCCGCGACCGAGAAATATAATTA 57.625 39.130 8.23 0.00 36.29 1.40
2328 2489 4.247267 TCCGCGACCGAGAAATATAATT 57.753 40.909 8.23 0.00 36.29 1.40
2329 2490 3.928727 TCCGCGACCGAGAAATATAAT 57.071 42.857 8.23 0.00 36.29 1.28
2330 2491 3.713858 TTCCGCGACCGAGAAATATAA 57.286 42.857 8.23 0.00 36.29 0.98
2331 2492 3.713858 TTTCCGCGACCGAGAAATATA 57.286 42.857 8.23 0.00 36.29 0.86
2332 2493 2.589798 TTTCCGCGACCGAGAAATAT 57.410 45.000 8.23 0.00 36.29 1.28
2333 2494 2.589798 ATTTCCGCGACCGAGAAATA 57.410 45.000 8.23 0.00 39.87 1.40
2334 2495 2.589798 TATTTCCGCGACCGAGAAAT 57.410 45.000 19.33 19.33 42.02 2.17
2335 2496 2.589798 ATATTTCCGCGACCGAGAAA 57.410 45.000 8.23 8.97 37.72 2.52
2336 2497 2.159212 TCAATATTTCCGCGACCGAGAA 60.159 45.455 8.23 0.00 36.29 2.87
2337 2498 1.406180 TCAATATTTCCGCGACCGAGA 59.594 47.619 8.23 0.00 36.29 4.04
2338 2499 1.521423 GTCAATATTTCCGCGACCGAG 59.479 52.381 8.23 0.00 36.29 4.63
2339 2500 1.563111 GTCAATATTTCCGCGACCGA 58.437 50.000 8.23 0.00 36.29 4.69
2340 2501 0.580104 GGTCAATATTTCCGCGACCG 59.420 55.000 8.23 0.00 37.04 4.79
2341 2502 1.658994 TGGTCAATATTTCCGCGACC 58.341 50.000 8.23 12.75 45.24 4.79
2342 2503 2.933906 TCTTGGTCAATATTTCCGCGAC 59.066 45.455 8.23 0.00 0.00 5.19
2343 2504 3.254470 TCTTGGTCAATATTTCCGCGA 57.746 42.857 8.23 0.00 0.00 5.87
2344 2505 3.126171 TGTTCTTGGTCAATATTTCCGCG 59.874 43.478 0.00 0.00 0.00 6.46
2345 2506 4.695217 TGTTCTTGGTCAATATTTCCGC 57.305 40.909 0.00 0.00 0.00 5.54
2346 2507 6.435430 TCATGTTCTTGGTCAATATTTCCG 57.565 37.500 0.00 0.00 0.00 4.30
2352 2513 9.904198 TCAAGATATTCATGTTCTTGGTCAATA 57.096 29.630 19.98 5.76 44.09 1.90
2353 2514 8.812513 TCAAGATATTCATGTTCTTGGTCAAT 57.187 30.769 19.98 4.15 44.09 2.57
2354 2515 8.634335 TTCAAGATATTCATGTTCTTGGTCAA 57.366 30.769 19.98 11.19 44.09 3.18
2355 2516 8.634335 TTTCAAGATATTCATGTTCTTGGTCA 57.366 30.769 19.98 9.71 44.09 4.02
2378 2539 9.884465 CGTTTGAAATCACTAAGAAGAGATTTT 57.116 29.630 10.66 0.00 46.51 1.82
2380 2541 8.608844 ACGTTTGAAATCACTAAGAAGAGATT 57.391 30.769 0.00 0.00 42.61 2.40
2381 2542 8.499162 CAACGTTTGAAATCACTAAGAAGAGAT 58.501 33.333 0.00 0.00 34.89 2.75
2382 2543 7.709182 TCAACGTTTGAAATCACTAAGAAGAGA 59.291 33.333 0.00 0.00 36.59 3.10
2383 2544 7.794349 GTCAACGTTTGAAATCACTAAGAAGAG 59.206 37.037 0.00 0.00 42.15 2.85
2384 2545 7.254658 GGTCAACGTTTGAAATCACTAAGAAGA 60.255 37.037 0.00 0.00 42.15 2.87
2385 2546 6.851330 GGTCAACGTTTGAAATCACTAAGAAG 59.149 38.462 0.00 0.00 42.15 2.85
2386 2547 6.540914 AGGTCAACGTTTGAAATCACTAAGAA 59.459 34.615 0.00 0.00 42.15 2.52
2387 2548 6.053005 AGGTCAACGTTTGAAATCACTAAGA 58.947 36.000 0.00 0.00 42.15 2.10
2388 2549 6.300354 AGGTCAACGTTTGAAATCACTAAG 57.700 37.500 0.00 0.00 42.15 2.18
2389 2550 7.789273 TTAGGTCAACGTTTGAAATCACTAA 57.211 32.000 0.00 0.00 42.15 2.24
2390 2551 7.789273 TTTAGGTCAACGTTTGAAATCACTA 57.211 32.000 0.00 0.00 42.15 2.74
2391 2552 6.687081 TTTAGGTCAACGTTTGAAATCACT 57.313 33.333 0.00 0.00 42.15 3.41
2392 2553 9.061610 CATATTTAGGTCAACGTTTGAAATCAC 57.938 33.333 0.00 0.00 42.15 3.06
2393 2554 8.788806 ACATATTTAGGTCAACGTTTGAAATCA 58.211 29.630 0.00 0.00 42.15 2.57
2394 2555 9.620660 AACATATTTAGGTCAACGTTTGAAATC 57.379 29.630 0.00 0.00 42.15 2.17
2395 2556 9.974980 AAACATATTTAGGTCAACGTTTGAAAT 57.025 25.926 0.00 3.30 42.15 2.17
2396 2557 9.239002 CAAACATATTTAGGTCAACGTTTGAAA 57.761 29.630 0.00 0.00 42.72 2.69
2397 2558 7.380065 GCAAACATATTTAGGTCAACGTTTGAA 59.620 33.333 14.00 0.00 42.72 2.69
2398 2559 6.858993 GCAAACATATTTAGGTCAACGTTTGA 59.141 34.615 14.00 0.00 42.72 2.69
2399 2560 6.088883 GGCAAACATATTTAGGTCAACGTTTG 59.911 38.462 0.00 0.00 42.88 2.93
2400 2561 6.153756 GGCAAACATATTTAGGTCAACGTTT 58.846 36.000 0.00 0.00 0.00 3.60
2401 2562 5.336134 GGGCAAACATATTTAGGTCAACGTT 60.336 40.000 0.00 0.00 0.00 3.99
2402 2563 4.157105 GGGCAAACATATTTAGGTCAACGT 59.843 41.667 0.00 0.00 0.00 3.99
2403 2564 4.439563 GGGGCAAACATATTTAGGTCAACG 60.440 45.833 0.00 0.00 0.00 4.10
2404 2565 4.464597 TGGGGCAAACATATTTAGGTCAAC 59.535 41.667 0.00 0.00 0.00 3.18
2405 2566 4.678256 TGGGGCAAACATATTTAGGTCAA 58.322 39.130 0.00 0.00 0.00 3.18
2406 2567 4.323569 TGGGGCAAACATATTTAGGTCA 57.676 40.909 0.00 0.00 0.00 4.02
2407 2568 5.669164 TTTGGGGCAAACATATTTAGGTC 57.331 39.130 0.00 0.00 0.00 3.85
2408 2569 6.634889 ATTTTGGGGCAAACATATTTAGGT 57.365 33.333 0.00 0.00 32.79 3.08
2409 2570 6.542005 GGAATTTTGGGGCAAACATATTTAGG 59.458 38.462 0.00 0.00 32.79 2.69
2410 2571 7.108847 TGGAATTTTGGGGCAAACATATTTAG 58.891 34.615 0.00 0.00 32.79 1.85
2411 2572 7.020827 TGGAATTTTGGGGCAAACATATTTA 57.979 32.000 0.00 0.00 32.79 1.40
2412 2573 5.885465 TGGAATTTTGGGGCAAACATATTT 58.115 33.333 0.00 0.00 32.79 1.40
2413 2574 5.250313 TCTGGAATTTTGGGGCAAACATATT 59.750 36.000 0.00 0.00 32.79 1.28
2414 2575 4.782156 TCTGGAATTTTGGGGCAAACATAT 59.218 37.500 0.00 0.00 32.79 1.78
2415 2576 4.020662 GTCTGGAATTTTGGGGCAAACATA 60.021 41.667 0.00 0.00 32.79 2.29
2416 2577 2.978278 TCTGGAATTTTGGGGCAAACAT 59.022 40.909 0.00 0.00 32.79 2.71
2417 2578 2.103941 GTCTGGAATTTTGGGGCAAACA 59.896 45.455 0.00 0.00 32.79 2.83
2418 2579 2.549992 GGTCTGGAATTTTGGGGCAAAC 60.550 50.000 0.00 0.00 32.79 2.93
2419 2580 1.696884 GGTCTGGAATTTTGGGGCAAA 59.303 47.619 0.00 0.00 0.00 3.68
2420 2581 1.347062 GGTCTGGAATTTTGGGGCAA 58.653 50.000 0.00 0.00 0.00 4.52
2421 2582 0.189574 TGGTCTGGAATTTTGGGGCA 59.810 50.000 0.00 0.00 0.00 5.36
2422 2583 1.347062 TTGGTCTGGAATTTTGGGGC 58.653 50.000 0.00 0.00 0.00 5.80
2423 2584 2.288763 CGTTTGGTCTGGAATTTTGGGG 60.289 50.000 0.00 0.00 0.00 4.96
2424 2585 2.288763 CCGTTTGGTCTGGAATTTTGGG 60.289 50.000 0.00 0.00 0.00 4.12
2425 2586 2.625790 TCCGTTTGGTCTGGAATTTTGG 59.374 45.455 0.00 0.00 36.30 3.28
2426 2587 4.314740 TTCCGTTTGGTCTGGAATTTTG 57.685 40.909 0.00 0.00 36.87 2.44
2427 2588 4.160626 TGTTTCCGTTTGGTCTGGAATTTT 59.839 37.500 0.00 0.00 41.18 1.82
2428 2589 3.702045 TGTTTCCGTTTGGTCTGGAATTT 59.298 39.130 0.00 0.00 41.18 1.82
2429 2590 3.067601 GTGTTTCCGTTTGGTCTGGAATT 59.932 43.478 0.00 0.00 41.18 2.17
2430 2591 2.621526 GTGTTTCCGTTTGGTCTGGAAT 59.378 45.455 0.00 0.00 41.18 3.01
2431 2592 2.018515 GTGTTTCCGTTTGGTCTGGAA 58.981 47.619 0.00 0.00 39.91 3.53
2432 2593 1.065345 TGTGTTTCCGTTTGGTCTGGA 60.065 47.619 0.00 0.00 36.30 3.86
2433 2594 1.384525 TGTGTTTCCGTTTGGTCTGG 58.615 50.000 0.00 0.00 36.30 3.86
2434 2595 3.708563 ATTGTGTTTCCGTTTGGTCTG 57.291 42.857 0.00 0.00 36.30 3.51
2435 2596 5.838531 TTAATTGTGTTTCCGTTTGGTCT 57.161 34.783 0.00 0.00 36.30 3.85
2436 2597 6.889019 TTTTAATTGTGTTTCCGTTTGGTC 57.111 33.333 0.00 0.00 36.30 4.02
2437 2598 7.851387 ATTTTTAATTGTGTTTCCGTTTGGT 57.149 28.000 0.00 0.00 36.30 3.67
2465 2626 8.887717 CCCAAAATTTAAAAGTGTGATTGTGAA 58.112 29.630 0.00 0.00 0.00 3.18
2466 2627 8.043710 ACCCAAAATTTAAAAGTGTGATTGTGA 58.956 29.630 0.00 0.00 0.00 3.58
2467 2628 8.207521 ACCCAAAATTTAAAAGTGTGATTGTG 57.792 30.769 0.00 0.00 0.00 3.33
2468 2629 9.320352 GTACCCAAAATTTAAAAGTGTGATTGT 57.680 29.630 0.00 0.00 0.00 2.71
2469 2630 9.319143 TGTACCCAAAATTTAAAAGTGTGATTG 57.681 29.630 0.00 0.00 0.00 2.67
2472 2633 9.892130 AAATGTACCCAAAATTTAAAAGTGTGA 57.108 25.926 0.00 0.00 0.00 3.58
2533 2694 9.571816 AATCAAATCAACCCAAACAAATTGTAT 57.428 25.926 0.00 0.00 37.32 2.29
2534 2695 8.970859 AATCAAATCAACCCAAACAAATTGTA 57.029 26.923 0.00 0.00 37.32 2.41
2535 2696 7.878547 AATCAAATCAACCCAAACAAATTGT 57.121 28.000 0.00 0.00 37.32 2.71
2536 2697 9.583765 AAAAATCAAATCAACCCAAACAAATTG 57.416 25.926 0.00 0.00 38.84 2.32
2613 2774 9.582431 GAAGCTTCTATGTATTACAGTACAACA 57.418 33.333 19.44 0.00 38.03 3.33
2614 2775 9.582431 TGAAGCTTCTATGTATTACAGTACAAC 57.418 33.333 26.09 0.00 38.03 3.32
2619 2780 9.672673 ACAAATGAAGCTTCTATGTATTACAGT 57.327 29.630 26.09 13.16 0.00 3.55
2620 2781 9.926751 CACAAATGAAGCTTCTATGTATTACAG 57.073 33.333 26.09 12.64 0.00 2.74
2621 2782 8.892723 CCACAAATGAAGCTTCTATGTATTACA 58.107 33.333 26.09 3.85 0.00 2.41
2622 2783 7.857885 GCCACAAATGAAGCTTCTATGTATTAC 59.142 37.037 26.09 13.30 0.00 1.89
2623 2784 7.555914 TGCCACAAATGAAGCTTCTATGTATTA 59.444 33.333 26.09 13.47 0.00 0.98
2624 2785 6.377996 TGCCACAAATGAAGCTTCTATGTATT 59.622 34.615 26.09 14.39 0.00 1.89
2625 2786 5.887598 TGCCACAAATGAAGCTTCTATGTAT 59.112 36.000 26.09 9.07 0.00 2.29
2626 2787 5.252547 TGCCACAAATGAAGCTTCTATGTA 58.747 37.500 26.09 6.95 0.00 2.29
2627 2788 4.081406 TGCCACAAATGAAGCTTCTATGT 58.919 39.130 26.09 22.38 0.00 2.29
2628 2789 4.397103 TCTGCCACAAATGAAGCTTCTATG 59.603 41.667 26.09 21.81 0.00 2.23
2629 2790 4.592942 TCTGCCACAAATGAAGCTTCTAT 58.407 39.130 26.09 15.16 0.00 1.98
2630 2791 4.019792 TCTGCCACAAATGAAGCTTCTA 57.980 40.909 26.09 13.60 0.00 2.10
2631 2792 2.867624 TCTGCCACAAATGAAGCTTCT 58.132 42.857 26.09 9.99 0.00 2.85
2632 2793 3.648339 TTCTGCCACAAATGAAGCTTC 57.352 42.857 19.89 19.89 0.00 3.86
2633 2794 4.405116 TTTTCTGCCACAAATGAAGCTT 57.595 36.364 0.00 0.00 0.00 3.74
2634 2795 4.405116 TTTTTCTGCCACAAATGAAGCT 57.595 36.364 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.