Multiple sequence alignment - TraesCS4B01G218700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G218700 chr4B 100.000 2455 0 0 1 2455 460569126 460566672 0.000000e+00 4534.0
1 TraesCS4B01G218700 chr4B 96.721 61 2 0 2137 2197 377799774 377799834 4.320000e-18 102.0
2 TraesCS4B01G218700 chr4A 86.727 1778 99 50 213 1919 90084273 90085984 0.000000e+00 1849.0
3 TraesCS4B01G218700 chr4A 87.405 262 20 8 2196 2454 90087321 90087572 3.090000e-74 289.0
4 TraesCS4B01G218700 chr4A 97.500 40 1 0 540 579 150305391 150305352 4.380000e-08 69.4
5 TraesCS4B01G218700 chr4D 88.889 1017 58 23 950 1919 374297248 374296240 0.000000e+00 1201.0
6 TraesCS4B01G218700 chr4D 92.060 806 51 9 60 862 374298081 374297286 0.000000e+00 1122.0
7 TraesCS4B01G218700 chr4D 86.853 251 20 7 2196 2443 374294804 374294564 4.020000e-68 268.0
8 TraesCS4B01G218700 chr5D 93.069 202 13 1 1942 2142 536698811 536699012 6.640000e-76 294.0
9 TraesCS4B01G218700 chr5D 89.720 214 20 2 1931 2142 528523677 528523890 3.110000e-69 272.0
10 TraesCS4B01G218700 chrUn 92.574 202 14 1 1942 2142 104277286 104277085 3.090000e-74 289.0
11 TraesCS4B01G218700 chr6D 92.574 202 14 1 1942 2142 62136749 62136950 3.090000e-74 289.0
12 TraesCS4B01G218700 chr6D 96.721 61 2 0 2137 2197 62137766 62137826 4.320000e-18 102.0
13 TraesCS4B01G218700 chr3D 92.157 204 14 2 1941 2142 574248256 574248053 1.110000e-73 287.0
14 TraesCS4B01G218700 chr3D 88.889 54 6 0 540 593 20246140 20246087 1.580000e-07 67.6
15 TraesCS4B01G218700 chr3B 90.741 216 17 3 1931 2143 13854924 13854709 4.000000e-73 285.0
16 TraesCS4B01G218700 chr3B 96.667 60 2 0 2137 2196 594444828 594444887 1.550000e-17 100.0
17 TraesCS4B01G218700 chr1D 92.079 202 15 1 1942 2142 163709471 163709270 1.440000e-72 283.0
18 TraesCS4B01G218700 chr1D 98.361 61 1 0 2137 2197 383362330 383362390 9.280000e-20 108.0
19 TraesCS4B01G218700 chr1D 96.667 60 2 0 2137 2196 424931078 424931019 1.550000e-17 100.0
20 TraesCS4B01G218700 chr7A 90.610 213 16 4 1934 2142 467785062 467784850 1.860000e-71 279.0
21 TraesCS4B01G218700 chr1A 90.187 214 19 2 1930 2142 313233363 313233575 6.690000e-71 278.0
22 TraesCS4B01G218700 chr1A 96.667 60 2 0 2137 2196 53994488 53994429 1.550000e-17 100.0
23 TraesCS4B01G218700 chr6A 98.333 60 1 0 2138 2197 382520422 382520481 3.340000e-19 106.0
24 TraesCS4B01G218700 chr5A 96.721 61 2 0 2137 2197 608599320 608599380 4.320000e-18 102.0
25 TraesCS4B01G218700 chr1B 96.721 61 2 0 2137 2197 639087658 639087718 4.320000e-18 102.0
26 TraesCS4B01G218700 chr7B 93.878 49 3 0 533 581 336907195 336907243 9.420000e-10 75.0
27 TraesCS4B01G218700 chr3A 87.037 54 3 3 540 593 482961012 482960963 9.480000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G218700 chr4B 460566672 460569126 2454 True 4534.000000 4534 100.000000 1 2455 1 chr4B.!!$R1 2454
1 TraesCS4B01G218700 chr4A 90084273 90087572 3299 False 1069.000000 1849 87.066000 213 2454 2 chr4A.!!$F1 2241
2 TraesCS4B01G218700 chr4D 374294564 374298081 3517 True 863.666667 1201 89.267333 60 2443 3 chr4D.!!$R1 2383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 977 0.036577 CTGCTCCCTCACTCAACCTG 60.037 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 3639 0.031994 ATTTTGTGTGGGCGAACTGC 59.968 50.0 0.0 0.0 45.38 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.863707 TAGGTCGTCCGAGCGTAT 57.136 55.556 12.54 0.00 46.10 3.06
18 19 3.986970 TAGGTCGTCCGAGCGTATA 57.013 52.632 12.54 0.00 46.10 1.47
19 20 2.462456 TAGGTCGTCCGAGCGTATAT 57.538 50.000 12.54 0.00 46.10 0.86
20 21 0.873054 AGGTCGTCCGAGCGTATATG 59.127 55.000 12.54 0.00 46.10 1.78
21 22 0.728466 GGTCGTCCGAGCGTATATGC 60.728 60.000 9.00 9.00 32.85 3.14
22 23 0.040692 GTCGTCCGAGCGTATATGCA 60.041 55.000 18.91 0.00 37.31 3.96
23 24 0.879090 TCGTCCGAGCGTATATGCAT 59.121 50.000 18.91 3.79 37.31 3.96
24 25 0.984829 CGTCCGAGCGTATATGCATG 59.015 55.000 18.91 10.09 37.31 4.06
25 26 1.401018 CGTCCGAGCGTATATGCATGA 60.401 52.381 18.91 8.96 37.31 3.07
26 27 2.672714 GTCCGAGCGTATATGCATGAA 58.327 47.619 18.91 0.00 37.31 2.57
27 28 2.663602 GTCCGAGCGTATATGCATGAAG 59.336 50.000 18.91 0.57 37.31 3.02
28 29 2.556622 TCCGAGCGTATATGCATGAAGA 59.443 45.455 18.91 5.56 37.31 2.87
29 30 3.193479 TCCGAGCGTATATGCATGAAGAT 59.807 43.478 18.91 0.00 37.31 2.40
30 31 3.305361 CCGAGCGTATATGCATGAAGATG 59.695 47.826 18.91 0.00 37.31 2.90
31 32 3.922850 CGAGCGTATATGCATGAAGATGT 59.077 43.478 18.91 0.00 37.31 3.06
32 33 4.031089 CGAGCGTATATGCATGAAGATGTC 59.969 45.833 18.91 3.71 37.31 3.06
33 34 3.922850 AGCGTATATGCATGAAGATGTCG 59.077 43.478 18.91 5.95 37.31 4.35
34 35 3.482598 GCGTATATGCATGAAGATGTCGC 60.483 47.826 10.16 13.83 34.15 5.19
35 36 3.674753 CGTATATGCATGAAGATGTCGCA 59.325 43.478 10.16 0.00 36.95 5.10
36 37 4.201561 CGTATATGCATGAAGATGTCGCAG 60.202 45.833 10.16 0.00 35.79 5.18
37 38 2.034104 ATGCATGAAGATGTCGCAGT 57.966 45.000 0.00 0.00 35.79 4.40
38 39 1.812235 TGCATGAAGATGTCGCAGTT 58.188 45.000 0.00 0.00 31.50 3.16
39 40 1.733912 TGCATGAAGATGTCGCAGTTC 59.266 47.619 0.00 0.00 31.50 3.01
40 41 1.733912 GCATGAAGATGTCGCAGTTCA 59.266 47.619 0.00 8.68 33.61 3.18
41 42 2.353889 GCATGAAGATGTCGCAGTTCAT 59.646 45.455 0.00 11.22 39.65 2.57
42 43 3.545624 GCATGAAGATGTCGCAGTTCATC 60.546 47.826 0.00 0.00 37.50 2.92
43 44 2.621338 TGAAGATGTCGCAGTTCATCC 58.379 47.619 0.00 0.00 39.26 3.51
44 45 1.590238 GAAGATGTCGCAGTTCATCCG 59.410 52.381 0.00 0.00 39.26 4.18
45 46 0.807667 AGATGTCGCAGTTCATCCGC 60.808 55.000 0.00 0.00 39.26 5.54
46 47 1.079197 ATGTCGCAGTTCATCCGCA 60.079 52.632 0.00 0.00 0.00 5.69
47 48 1.086067 ATGTCGCAGTTCATCCGCAG 61.086 55.000 0.00 0.00 0.00 5.18
48 49 1.446099 GTCGCAGTTCATCCGCAGA 60.446 57.895 0.00 0.00 0.00 4.26
49 50 1.014044 GTCGCAGTTCATCCGCAGAA 61.014 55.000 0.00 0.00 0.00 3.02
50 51 0.737367 TCGCAGTTCATCCGCAGAAG 60.737 55.000 0.00 0.00 0.00 2.85
51 52 1.427020 GCAGTTCATCCGCAGAAGC 59.573 57.895 0.00 0.00 37.42 3.86
82 83 0.179163 GCGCATAAAACACCTCTGGC 60.179 55.000 0.30 0.00 0.00 4.85
92 93 1.414919 ACACCTCTGGCGAAACACTAA 59.585 47.619 0.00 0.00 0.00 2.24
123 124 3.315418 CGCCATACATGAGATCTGACAG 58.685 50.000 0.00 0.00 0.00 3.51
127 128 5.868258 GCCATACATGAGATCTGACAGTATG 59.132 44.000 20.33 20.33 46.00 2.39
128 129 6.294955 GCCATACATGAGATCTGACAGTATGA 60.295 42.308 25.07 1.04 39.55 2.15
167 168 3.372730 GCATGCCTTGGCGTTCCA 61.373 61.111 6.36 0.00 41.55 3.53
189 190 0.114560 TCCACTCGTCCCTCTCCTTT 59.885 55.000 0.00 0.00 0.00 3.11
236 238 9.528018 CTCAATTTTGTTAGAAAGTTTGGCTTA 57.472 29.630 0.00 0.00 36.17 3.09
319 324 2.875296 AGTTAGATGCCCTGCAACAAA 58.125 42.857 0.00 0.00 43.62 2.83
397 402 6.209788 TCATTTAAGGCGTTTCAATAGGGTTT 59.790 34.615 0.00 0.00 0.00 3.27
440 446 1.000060 AGTCATTGGTGTGTGCATTGC 60.000 47.619 0.46 0.46 0.00 3.56
452 458 5.463061 GTGTGTGCATTGCTAGAACAAAATT 59.537 36.000 10.49 0.00 32.27 1.82
453 459 6.640499 GTGTGTGCATTGCTAGAACAAAATTA 59.360 34.615 10.49 0.00 32.27 1.40
577 585 4.465632 TCAGTGCTACATACATCCGTTT 57.534 40.909 0.00 0.00 0.00 3.60
582 590 5.126545 AGTGCTACATACATCCGTTTGAGTA 59.873 40.000 0.00 0.00 0.00 2.59
593 601 8.248117 ACATCCGTTTGAGTAACAAGTAATAC 57.752 34.615 0.00 0.00 39.77 1.89
594 602 7.332678 ACATCCGTTTGAGTAACAAGTAATACC 59.667 37.037 0.00 0.00 39.77 2.73
598 606 7.063780 CCGTTTGAGTAACAAGTAATACCGATT 59.936 37.037 0.00 0.00 39.77 3.34
599 607 9.075519 CGTTTGAGTAACAAGTAATACCGATTA 57.924 33.333 0.00 0.00 39.77 1.75
656 668 8.268850 TGGCTGAGAATGTAATCTTTCTTTAC 57.731 34.615 0.00 0.00 37.91 2.01
659 671 8.721478 GCTGAGAATGTAATCTTTCTTTACACA 58.279 33.333 0.00 0.00 41.08 3.72
665 677 6.611381 TGTAATCTTTCTTTACACATGCAGC 58.389 36.000 0.00 0.00 35.27 5.25
690 702 3.656559 ACAAGATGCATGTCCAAAAAGC 58.343 40.909 2.46 0.00 0.00 3.51
693 705 5.186409 ACAAGATGCATGTCCAAAAAGCTAT 59.814 36.000 2.46 0.00 0.00 2.97
701 713 6.729187 CATGTCCAAAAAGCTATACCTAAGC 58.271 40.000 0.00 0.00 40.40 3.09
830 859 3.449377 TGCCGTCTATGGACTTGTGATTA 59.551 43.478 7.68 0.00 40.10 1.75
878 907 0.036875 GCCTCTATAAATGCCGCCCT 59.963 55.000 0.00 0.00 0.00 5.19
906 935 1.140589 TGCACAGCAAAACCCAACG 59.859 52.632 0.00 0.00 34.76 4.10
909 938 0.457851 CACAGCAAAACCCAACGGAA 59.542 50.000 0.00 0.00 0.00 4.30
915 944 4.216687 CAGCAAAACCCAACGGAACTATAA 59.783 41.667 0.00 0.00 0.00 0.98
941 972 0.113190 TCACTCTGCTCCCTCACTCA 59.887 55.000 0.00 0.00 0.00 3.41
945 976 0.178921 TCTGCTCCCTCACTCAACCT 60.179 55.000 0.00 0.00 0.00 3.50
946 977 0.036577 CTGCTCCCTCACTCAACCTG 60.037 60.000 0.00 0.00 0.00 4.00
947 978 0.764369 TGCTCCCTCACTCAACCTGT 60.764 55.000 0.00 0.00 0.00 4.00
948 979 0.036858 GCTCCCTCACTCAACCTGTC 60.037 60.000 0.00 0.00 0.00 3.51
959 990 2.763645 AACCTGTCCCCCACACACC 61.764 63.158 0.00 0.00 0.00 4.16
960 991 3.174987 CCTGTCCCCCACACACCA 61.175 66.667 0.00 0.00 0.00 4.17
968 999 1.695114 CCCCACACACCACACAGAGA 61.695 60.000 0.00 0.00 0.00 3.10
983 1014 0.810648 AGAGAGACGCAGAGAAGCAG 59.189 55.000 0.00 0.00 0.00 4.24
988 1019 2.263852 CGCAGAGAAGCAGCAGGA 59.736 61.111 0.00 0.00 0.00 3.86
990 1021 1.449956 GCAGAGAAGCAGCAGGAGG 60.450 63.158 0.00 0.00 0.00 4.30
999 1038 2.285969 AGCAGGAGGGTGATGGCT 60.286 61.111 0.00 0.00 0.00 4.75
1188 1247 2.069273 GGTGAGTGACCAAGTCGATTG 58.931 52.381 0.00 0.00 45.34 2.67
1190 1249 1.079503 GAGTGACCAAGTCGATTGCC 58.920 55.000 0.00 0.00 37.60 4.52
1194 1253 0.744771 GACCAAGTCGATTGCCCCTC 60.745 60.000 0.00 0.00 37.60 4.30
1210 1272 1.520666 CTCCCCGTTGCTCCGTATT 59.479 57.895 0.00 0.00 0.00 1.89
1229 1291 5.856986 CGTATTATTACCTCGTCTCATGTGG 59.143 44.000 0.00 0.00 0.00 4.17
1239 1301 0.038251 TCTCATGTGGTGCGTGTCTC 60.038 55.000 0.00 0.00 35.64 3.36
1250 1312 0.029567 GCGTGTCTCTGATCTACGGG 59.970 60.000 0.00 0.00 35.49 5.28
1410 1472 0.392595 CTTCATCTGCAGCCTCAGCA 60.393 55.000 9.47 0.00 43.56 4.41
1480 1547 1.335689 GCTGCAGCTTCTGGTTTCAAG 60.336 52.381 31.33 0.00 38.21 3.02
1484 1551 3.446873 TGCAGCTTCTGGTTTCAAGAAAA 59.553 39.130 0.00 0.00 29.84 2.29
1487 1554 3.045688 GCTTCTGGTTTCAAGAAAAGCG 58.954 45.455 0.00 0.00 46.16 4.68
1538 1605 6.527957 GCATGTGAAAACATCAATAAAGTGC 58.472 36.000 0.00 0.00 40.50 4.40
1565 1653 4.202070 GGAACTCAGTGACTCCTAGTATGC 60.202 50.000 8.67 0.00 0.00 3.14
1591 1679 1.006337 TACGCCCCGTGTGTTGTAC 60.006 57.895 0.00 0.00 41.39 2.90
1592 1680 1.462731 TACGCCCCGTGTGTTGTACT 61.463 55.000 0.00 0.00 41.39 2.73
1593 1681 2.314647 CGCCCCGTGTGTTGTACTG 61.315 63.158 0.00 0.00 0.00 2.74
1594 1682 1.227734 GCCCCGTGTGTTGTACTGT 60.228 57.895 0.00 0.00 0.00 3.55
1595 1683 0.033781 GCCCCGTGTGTTGTACTGTA 59.966 55.000 0.00 0.00 0.00 2.74
1616 1704 6.170506 TGTATCCCTGAGTTGTTAACATGAC 58.829 40.000 9.56 5.70 0.00 3.06
1657 1745 4.697514 CACCAATTGATACAGAGACCGAT 58.302 43.478 7.12 0.00 0.00 4.18
1724 1818 4.539870 GCATGTGTTATGTGTGGATATGC 58.460 43.478 0.00 0.00 32.78 3.14
1749 1843 2.607635 GTGGTAGGTAACGCATGATGTG 59.392 50.000 4.14 4.14 46.39 3.21
1772 1866 2.572095 AAGAACGATCGCCGGCATGA 62.572 55.000 28.98 17.47 43.93 3.07
1813 1907 7.201574 GGACTGGTTTGTTTAATTTGTTTCCAC 60.202 37.037 0.00 0.00 0.00 4.02
1819 1913 9.152595 GTTTGTTTAATTTGTTTCCACCAGTAA 57.847 29.630 0.00 0.00 0.00 2.24
1823 1917 4.584327 ATTTGTTTCCACCAGTAAGCAC 57.416 40.909 0.00 0.00 0.00 4.40
1862 1956 5.126384 TGGTTTAGGCGAAATTCCAATTAGG 59.874 40.000 0.00 0.00 39.47 2.69
1916 3428 9.300681 TCACTCTTGGTCATATTTCTTTTGATT 57.699 29.630 0.00 0.00 0.00 2.57
1951 3463 9.885743 CAGAATTTTTCAAAAGAAACACTAACG 57.114 29.630 0.00 0.00 0.00 3.18
1952 3464 8.592155 AGAATTTTTCAAAAGAAACACTAACGC 58.408 29.630 0.00 0.00 0.00 4.84
1953 3465 6.635166 TTTTTCAAAAGAAACACTAACGCC 57.365 33.333 0.00 0.00 0.00 5.68
1954 3466 3.974871 TCAAAAGAAACACTAACGCCC 57.025 42.857 0.00 0.00 0.00 6.13
1955 3467 3.280295 TCAAAAGAAACACTAACGCCCA 58.720 40.909 0.00 0.00 0.00 5.36
1956 3468 3.065648 TCAAAAGAAACACTAACGCCCAC 59.934 43.478 0.00 0.00 0.00 4.61
1957 3469 2.335316 AAGAAACACTAACGCCCACA 57.665 45.000 0.00 0.00 0.00 4.17
1958 3470 1.589803 AGAAACACTAACGCCCACAC 58.410 50.000 0.00 0.00 0.00 3.82
1959 3471 1.134340 AGAAACACTAACGCCCACACA 60.134 47.619 0.00 0.00 0.00 3.72
1960 3472 1.877443 GAAACACTAACGCCCACACAT 59.123 47.619 0.00 0.00 0.00 3.21
1961 3473 1.234821 AACACTAACGCCCACACATG 58.765 50.000 0.00 0.00 0.00 3.21
1962 3474 0.107831 ACACTAACGCCCACACATGT 59.892 50.000 0.00 0.00 0.00 3.21
1963 3475 0.516877 CACTAACGCCCACACATGTG 59.483 55.000 24.25 24.25 45.23 3.21
1971 3483 2.256158 CACACATGTGGGCGCTTG 59.744 61.111 28.64 13.46 42.10 4.01
1972 3484 3.673484 ACACATGTGGGCGCTTGC 61.673 61.111 28.64 0.00 38.11 4.01
1973 3485 3.672447 CACATGTGGGCGCTTGCA 61.672 61.111 18.51 3.88 41.71 4.08
1974 3486 2.677524 ACATGTGGGCGCTTGCAT 60.678 55.556 7.64 6.33 41.71 3.96
1975 3487 2.103538 CATGTGGGCGCTTGCATC 59.896 61.111 7.64 0.00 41.71 3.91
1976 3488 2.044650 ATGTGGGCGCTTGCATCT 60.045 55.556 7.64 0.00 41.71 2.90
1977 3489 2.117156 ATGTGGGCGCTTGCATCTC 61.117 57.895 7.64 0.00 41.71 2.75
1978 3490 3.869272 GTGGGCGCTTGCATCTCG 61.869 66.667 7.64 0.00 41.71 4.04
1983 3495 3.869272 CGCTTGCATCTCGCCCAC 61.869 66.667 0.00 0.00 41.33 4.61
1984 3496 2.747460 GCTTGCATCTCGCCCACA 60.747 61.111 0.00 0.00 41.33 4.17
1985 3497 3.044059 GCTTGCATCTCGCCCACAC 62.044 63.158 0.00 0.00 41.33 3.82
1986 3498 2.741985 TTGCATCTCGCCCACACG 60.742 61.111 0.00 0.00 41.33 4.49
1989 3501 2.512286 CATCTCGCCCACACGCAT 60.512 61.111 0.00 0.00 0.00 4.73
1990 3502 2.512286 ATCTCGCCCACACGCATG 60.512 61.111 0.00 0.00 0.00 4.06
1991 3503 4.758251 TCTCGCCCACACGCATGG 62.758 66.667 0.00 0.00 39.71 3.66
1992 3504 4.758251 CTCGCCCACACGCATGGA 62.758 66.667 7.11 0.00 43.02 3.41
1993 3505 4.094646 TCGCCCACACGCATGGAT 62.095 61.111 7.11 0.00 43.02 3.41
1994 3506 3.576356 CGCCCACACGCATGGATC 61.576 66.667 7.11 0.00 43.02 3.36
1995 3507 3.211963 GCCCACACGCATGGATCC 61.212 66.667 4.20 4.20 43.02 3.36
1996 3508 2.896854 CCCACACGCATGGATCCG 60.897 66.667 7.39 0.00 43.02 4.18
1997 3509 3.576356 CCACACGCATGGATCCGC 61.576 66.667 7.39 4.26 43.02 5.54
1998 3510 2.819154 CACACGCATGGATCCGCA 60.819 61.111 7.39 0.00 0.00 5.69
1999 3511 2.182181 CACACGCATGGATCCGCAT 61.182 57.895 7.39 0.00 0.00 4.73
2000 3512 1.889105 ACACGCATGGATCCGCATC 60.889 57.895 7.39 0.00 0.00 3.91
2007 3519 4.218722 GGATCCGCATCCGTTTGT 57.781 55.556 0.00 0.00 39.52 2.83
2008 3520 1.721487 GGATCCGCATCCGTTTGTG 59.279 57.895 0.00 0.00 39.52 3.33
2009 3521 0.742990 GGATCCGCATCCGTTTGTGA 60.743 55.000 0.00 0.00 39.52 3.58
2010 3522 0.652592 GATCCGCATCCGTTTGTGAG 59.347 55.000 0.00 0.00 0.00 3.51
2011 3523 1.369091 ATCCGCATCCGTTTGTGAGC 61.369 55.000 0.00 0.00 0.00 4.26
2012 3524 2.096406 CGCATCCGTTTGTGAGCG 59.904 61.111 0.00 0.00 39.17 5.03
2013 3525 2.202349 GCATCCGTTTGTGAGCGC 60.202 61.111 0.00 0.00 0.00 5.92
2014 3526 2.965147 GCATCCGTTTGTGAGCGCA 61.965 57.895 11.47 0.00 0.00 6.09
2015 3527 1.796151 CATCCGTTTGTGAGCGCAT 59.204 52.632 11.47 0.00 0.00 4.73
2016 3528 0.168788 CATCCGTTTGTGAGCGCATT 59.831 50.000 11.47 0.00 0.00 3.56
2017 3529 1.396648 CATCCGTTTGTGAGCGCATTA 59.603 47.619 11.47 0.00 0.00 1.90
2018 3530 1.514003 TCCGTTTGTGAGCGCATTAA 58.486 45.000 11.47 0.00 0.00 1.40
2019 3531 2.080693 TCCGTTTGTGAGCGCATTAAT 58.919 42.857 11.47 0.00 0.00 1.40
2020 3532 2.095213 TCCGTTTGTGAGCGCATTAATC 59.905 45.455 11.47 0.00 0.00 1.75
2021 3533 2.095853 CCGTTTGTGAGCGCATTAATCT 59.904 45.455 11.47 0.00 0.00 2.40
2022 3534 3.426159 CCGTTTGTGAGCGCATTAATCTT 60.426 43.478 11.47 0.00 0.00 2.40
2023 3535 3.539563 CGTTTGTGAGCGCATTAATCTTG 59.460 43.478 11.47 0.00 0.00 3.02
2024 3536 3.763097 TTGTGAGCGCATTAATCTTGG 57.237 42.857 11.47 0.00 0.00 3.61
2025 3537 1.401552 TGTGAGCGCATTAATCTTGGC 59.598 47.619 11.47 0.00 0.00 4.52
2026 3538 1.401552 GTGAGCGCATTAATCTTGGCA 59.598 47.619 11.47 0.00 0.00 4.92
2027 3539 2.033801 GTGAGCGCATTAATCTTGGCAT 59.966 45.455 11.47 0.00 0.00 4.40
2028 3540 2.033675 TGAGCGCATTAATCTTGGCATG 59.966 45.455 11.47 0.00 0.00 4.06
2029 3541 2.026641 AGCGCATTAATCTTGGCATGT 58.973 42.857 11.47 0.00 0.00 3.21
2030 3542 2.428171 AGCGCATTAATCTTGGCATGTT 59.572 40.909 11.47 0.00 0.00 2.71
2031 3543 3.119029 AGCGCATTAATCTTGGCATGTTT 60.119 39.130 11.47 1.51 0.00 2.83
2032 3544 3.618150 GCGCATTAATCTTGGCATGTTTT 59.382 39.130 0.30 0.00 0.00 2.43
2033 3545 4.093261 GCGCATTAATCTTGGCATGTTTTT 59.907 37.500 0.30 0.00 0.00 1.94
2034 3546 5.290643 GCGCATTAATCTTGGCATGTTTTTA 59.709 36.000 0.30 0.00 0.00 1.52
2035 3547 6.508404 GCGCATTAATCTTGGCATGTTTTTAG 60.508 38.462 0.30 0.00 0.00 1.85
2036 3548 6.531240 CGCATTAATCTTGGCATGTTTTTAGT 59.469 34.615 0.00 0.00 0.00 2.24
2037 3549 7.463119 CGCATTAATCTTGGCATGTTTTTAGTG 60.463 37.037 0.00 6.14 0.00 2.74
2038 3550 7.674705 GCATTAATCTTGGCATGTTTTTAGTGC 60.675 37.037 16.12 16.12 38.12 4.40
2046 3558 4.423732 GCATGTTTTTAGTGCCACATAGG 58.576 43.478 0.00 0.00 41.84 2.57
2047 3559 4.157656 GCATGTTTTTAGTGCCACATAGGA 59.842 41.667 0.00 0.00 41.22 2.94
2048 3560 5.640732 CATGTTTTTAGTGCCACATAGGAC 58.359 41.667 0.00 0.00 41.22 3.85
2049 3561 4.980573 TGTTTTTAGTGCCACATAGGACT 58.019 39.130 0.00 0.00 41.22 3.85
2050 3562 4.759693 TGTTTTTAGTGCCACATAGGACTG 59.240 41.667 0.00 0.00 41.22 3.51
2051 3563 3.627395 TTTAGTGCCACATAGGACTGG 57.373 47.619 0.00 0.00 41.22 4.00
2052 3564 1.496060 TAGTGCCACATAGGACTGGG 58.504 55.000 0.00 0.00 41.22 4.45
2053 3565 1.452108 GTGCCACATAGGACTGGGC 60.452 63.158 0.00 0.00 44.82 5.36
2054 3566 1.616327 TGCCACATAGGACTGGGCT 60.616 57.895 0.00 0.00 44.85 5.19
2055 3567 1.153086 GCCACATAGGACTGGGCTG 60.153 63.158 0.00 0.00 41.39 4.85
2056 3568 1.528824 CCACATAGGACTGGGCTGG 59.471 63.158 0.00 0.00 41.22 4.85
2057 3569 1.274703 CCACATAGGACTGGGCTGGT 61.275 60.000 0.00 0.00 41.22 4.00
2058 3570 0.107508 CACATAGGACTGGGCTGGTG 60.108 60.000 0.00 0.00 0.00 4.17
2059 3571 0.547712 ACATAGGACTGGGCTGGTGT 60.548 55.000 0.00 0.00 0.00 4.16
2060 3572 0.107508 CATAGGACTGGGCTGGTGTG 60.108 60.000 0.00 0.00 0.00 3.82
2061 3573 0.547712 ATAGGACTGGGCTGGTGTGT 60.548 55.000 0.00 0.00 0.00 3.72
2062 3574 1.480212 TAGGACTGGGCTGGTGTGTG 61.480 60.000 0.00 0.00 0.00 3.82
2063 3575 2.281761 GACTGGGCTGGTGTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
2064 3576 3.850098 GACTGGGCTGGTGTGTGGG 62.850 68.421 0.00 0.00 0.00 4.61
2067 3579 4.684134 GGGCTGGTGTGTGGGCAT 62.684 66.667 0.00 0.00 0.00 4.40
2068 3580 2.601367 GGCTGGTGTGTGGGCATT 60.601 61.111 0.00 0.00 0.00 3.56
2069 3581 2.639327 GGCTGGTGTGTGGGCATTC 61.639 63.158 0.00 0.00 0.00 2.67
2070 3582 1.902918 GCTGGTGTGTGGGCATTCA 60.903 57.895 0.00 0.00 0.00 2.57
2071 3583 1.959085 CTGGTGTGTGGGCATTCAC 59.041 57.895 0.00 0.00 38.09 3.18
2072 3584 3.365535 GGTGTGTGGGCATTCACC 58.634 61.111 0.00 0.00 42.40 4.02
2082 3594 4.402528 CATTCACCCGGTCGCCCA 62.403 66.667 0.00 0.00 0.00 5.36
2083 3595 4.404098 ATTCACCCGGTCGCCCAC 62.404 66.667 0.00 0.00 0.00 4.61
2097 3609 1.953772 CCCACACGGCTGTTTTACC 59.046 57.895 0.00 0.00 0.00 2.85
2098 3610 0.820074 CCCACACGGCTGTTTTACCA 60.820 55.000 0.00 0.00 0.00 3.25
2099 3611 0.309612 CCACACGGCTGTTTTACCAC 59.690 55.000 0.00 0.00 0.00 4.16
2100 3612 1.018148 CACACGGCTGTTTTACCACA 58.982 50.000 0.00 0.00 0.00 4.17
2101 3613 1.018910 ACACGGCTGTTTTACCACAC 58.981 50.000 0.00 0.00 0.00 3.82
2102 3614 0.041663 CACGGCTGTTTTACCACACG 60.042 55.000 0.00 0.00 0.00 4.49
2103 3615 1.161563 ACGGCTGTTTTACCACACGG 61.162 55.000 0.00 0.00 38.77 4.94
2104 3616 1.847890 CGGCTGTTTTACCACACGGG 61.848 60.000 0.00 0.00 44.81 5.28
2105 3617 0.535553 GGCTGTTTTACCACACGGGA 60.536 55.000 0.00 0.00 41.15 5.14
2106 3618 0.872388 GCTGTTTTACCACACGGGAG 59.128 55.000 0.00 0.00 41.15 4.30
2107 3619 1.519408 CTGTTTTACCACACGGGAGG 58.481 55.000 0.00 0.00 41.15 4.30
2108 3620 0.108963 TGTTTTACCACACGGGAGGG 59.891 55.000 5.98 1.91 41.15 4.30
2109 3621 0.607217 GTTTTACCACACGGGAGGGG 60.607 60.000 5.98 0.00 41.15 4.79
2110 3622 2.414658 TTTTACCACACGGGAGGGGC 62.415 60.000 5.98 0.00 41.15 5.80
2126 3638 2.909965 GCCGGTTTGTGGGCTTCA 60.910 61.111 1.90 0.00 45.93 3.02
2127 3639 2.919494 GCCGGTTTGTGGGCTTCAG 61.919 63.158 1.90 0.00 45.93 3.02
2128 3640 2.644992 CGGTTTGTGGGCTTCAGC 59.355 61.111 0.00 0.00 41.14 4.26
2129 3641 2.192861 CGGTTTGTGGGCTTCAGCA 61.193 57.895 0.30 0.00 44.36 4.41
2130 3642 1.662044 GGTTTGTGGGCTTCAGCAG 59.338 57.895 0.30 0.00 44.36 4.24
2131 3643 1.109323 GGTTTGTGGGCTTCAGCAGT 61.109 55.000 0.30 0.00 44.36 4.40
2132 3644 0.746659 GTTTGTGGGCTTCAGCAGTT 59.253 50.000 0.30 0.00 44.36 3.16
2133 3645 1.032014 TTTGTGGGCTTCAGCAGTTC 58.968 50.000 0.30 0.00 44.36 3.01
2134 3646 1.165907 TTGTGGGCTTCAGCAGTTCG 61.166 55.000 0.30 0.00 44.36 3.95
2135 3647 2.669569 TGGGCTTCAGCAGTTCGC 60.670 61.111 0.30 0.00 44.36 4.70
2136 3648 3.435186 GGGCTTCAGCAGTTCGCC 61.435 66.667 0.30 0.00 44.04 5.54
2137 3649 3.435186 GGCTTCAGCAGTTCGCCC 61.435 66.667 0.30 0.00 44.04 6.13
2138 3650 2.669569 GCTTCAGCAGTTCGCCCA 60.670 61.111 0.00 0.00 44.04 5.36
2139 3651 2.970974 GCTTCAGCAGTTCGCCCAC 61.971 63.158 0.00 0.00 44.04 4.61
2140 3652 1.597854 CTTCAGCAGTTCGCCCACA 60.598 57.895 0.00 0.00 44.04 4.17
2141 3653 1.845809 CTTCAGCAGTTCGCCCACAC 61.846 60.000 0.00 0.00 44.04 3.82
2142 3654 2.591429 CAGCAGTTCGCCCACACA 60.591 61.111 0.00 0.00 44.04 3.72
2143 3655 2.186160 CAGCAGTTCGCCCACACAA 61.186 57.895 0.00 0.00 44.04 3.33
2144 3656 1.453015 AGCAGTTCGCCCACACAAA 60.453 52.632 0.00 0.00 44.04 2.83
2145 3657 1.034838 AGCAGTTCGCCCACACAAAA 61.035 50.000 0.00 0.00 44.04 2.44
2146 3658 0.031994 GCAGTTCGCCCACACAAAAT 59.968 50.000 0.00 0.00 32.94 1.82
2147 3659 1.769733 CAGTTCGCCCACACAAAATG 58.230 50.000 0.00 0.00 0.00 2.32
2148 3660 1.066908 CAGTTCGCCCACACAAAATGT 59.933 47.619 0.00 0.00 44.81 2.71
2161 3673 3.214328 ACAAAATGTGTGGACAGACTCC 58.786 45.455 1.25 0.00 39.72 3.85
2162 3674 2.554032 CAAAATGTGTGGACAGACTCCC 59.446 50.000 1.25 0.00 38.49 4.30
2163 3675 1.734655 AATGTGTGGACAGACTCCCT 58.265 50.000 1.25 0.00 38.49 4.20
2164 3676 2.623418 ATGTGTGGACAGACTCCCTA 57.377 50.000 1.25 0.00 38.49 3.53
2165 3677 2.391926 TGTGTGGACAGACTCCCTAA 57.608 50.000 1.25 0.00 38.49 2.69
2166 3678 1.968493 TGTGTGGACAGACTCCCTAAC 59.032 52.381 1.25 0.00 38.49 2.34
2167 3679 1.968493 GTGTGGACAGACTCCCTAACA 59.032 52.381 0.00 0.00 38.49 2.41
2168 3680 1.968493 TGTGGACAGACTCCCTAACAC 59.032 52.381 0.00 0.00 38.49 3.32
2169 3681 1.275573 GTGGACAGACTCCCTAACACC 59.724 57.143 0.00 0.00 38.49 4.16
2170 3682 0.903236 GGACAGACTCCCTAACACCC 59.097 60.000 0.00 0.00 31.83 4.61
2171 3683 1.640917 GACAGACTCCCTAACACCCA 58.359 55.000 0.00 0.00 0.00 4.51
2172 3684 1.275573 GACAGACTCCCTAACACCCAC 59.724 57.143 0.00 0.00 0.00 4.61
2173 3685 1.348064 CAGACTCCCTAACACCCACA 58.652 55.000 0.00 0.00 0.00 4.17
2174 3686 1.002087 CAGACTCCCTAACACCCACAC 59.998 57.143 0.00 0.00 0.00 3.82
2175 3687 0.037605 GACTCCCTAACACCCACACG 60.038 60.000 0.00 0.00 0.00 4.49
2176 3688 0.761702 ACTCCCTAACACCCACACGT 60.762 55.000 0.00 0.00 0.00 4.49
2177 3689 0.320421 CTCCCTAACACCCACACGTG 60.320 60.000 15.48 15.48 39.75 4.49
2179 3691 0.882927 CCCTAACACCCACACGTGTG 60.883 60.000 36.13 36.13 46.19 3.82
2189 3701 0.438445 CACACGTGTGGCACTTATCG 59.562 55.000 35.65 18.40 42.10 2.92
2190 3702 0.669318 ACACGTGTGGCACTTATCGG 60.669 55.000 22.71 13.07 34.19 4.18
2191 3703 1.740296 ACGTGTGGCACTTATCGGC 60.740 57.895 19.83 0.00 31.34 5.54
2192 3704 2.798501 CGTGTGGCACTTATCGGCG 61.799 63.158 19.83 0.00 31.34 6.46
2193 3705 1.740296 GTGTGGCACTTATCGGCGT 60.740 57.895 19.83 0.00 0.00 5.68
2194 3706 1.447140 TGTGGCACTTATCGGCGTC 60.447 57.895 19.83 0.00 0.00 5.19
2198 3710 1.883084 GCACTTATCGGCGTCCAGG 60.883 63.158 6.85 0.00 0.00 4.45
2201 3713 1.030457 ACTTATCGGCGTCCAGGTAG 58.970 55.000 6.85 0.00 0.00 3.18
2246 3759 0.037326 GGTGACTCCGCATGAACTCA 60.037 55.000 0.00 0.00 0.00 3.41
2262 3775 4.223700 TGAACTCAGAATGTAGGATGTGCT 59.776 41.667 0.00 0.00 37.40 4.40
2263 3776 4.399004 ACTCAGAATGTAGGATGTGCTC 57.601 45.455 0.00 0.00 37.40 4.26
2264 3777 3.133721 ACTCAGAATGTAGGATGTGCTCC 59.866 47.826 0.00 0.00 40.30 4.70
2283 3796 9.338968 TGTGCTCCTATCCTATCCTAATAAAAT 57.661 33.333 0.00 0.00 0.00 1.82
2353 3867 9.515226 ACTATTGGAGTATTTTAGTTTCTTGCA 57.485 29.630 0.00 0.00 36.27 4.08
2396 3910 1.962807 CTTGTGCCATGTGGAAAAGGA 59.037 47.619 2.55 0.00 37.39 3.36
2401 3915 2.364970 TGCCATGTGGAAAAGGAACAAG 59.635 45.455 2.55 0.00 37.39 3.16
2412 3926 0.107410 AGGAACAAGTTCGGTGCACA 60.107 50.000 20.43 0.00 40.37 4.57
2421 3935 2.116366 GTTCGGTGCACAAAACATGTC 58.884 47.619 20.43 0.00 41.46 3.06
2440 3954 6.094603 ACATGTCTCATTTAGCCACTCATTTC 59.905 38.462 0.00 0.00 0.00 2.17
2443 3957 5.810587 GTCTCATTTAGCCACTCATTTCGTA 59.189 40.000 0.00 0.00 0.00 3.43
2444 3958 5.810587 TCTCATTTAGCCACTCATTTCGTAC 59.189 40.000 0.00 0.00 0.00 3.67
2445 3959 5.730550 TCATTTAGCCACTCATTTCGTACT 58.269 37.500 0.00 0.00 0.00 2.73
2446 3960 6.869695 TCATTTAGCCACTCATTTCGTACTA 58.130 36.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.071540 CATATACGCTCGGACGACCTA 58.928 52.381 1.72 0.00 36.70 3.08
2 3 0.728466 GCATATACGCTCGGACGACC 60.728 60.000 5.01 0.00 36.70 4.79
3 4 0.040692 TGCATATACGCTCGGACGAC 60.041 55.000 5.01 0.00 36.70 4.34
5 6 0.984829 CATGCATATACGCTCGGACG 59.015 55.000 0.00 0.00 39.50 4.79
6 7 2.347697 TCATGCATATACGCTCGGAC 57.652 50.000 0.00 0.00 0.00 4.79
7 8 2.556622 TCTTCATGCATATACGCTCGGA 59.443 45.455 0.00 0.00 0.00 4.55
8 9 2.946564 TCTTCATGCATATACGCTCGG 58.053 47.619 0.00 0.00 0.00 4.63
9 10 3.922850 ACATCTTCATGCATATACGCTCG 59.077 43.478 0.00 0.00 32.57 5.03
10 11 4.031089 CGACATCTTCATGCATATACGCTC 59.969 45.833 0.00 0.00 32.57 5.03
11 12 3.922850 CGACATCTTCATGCATATACGCT 59.077 43.478 0.00 0.00 32.57 5.07
12 13 3.482598 GCGACATCTTCATGCATATACGC 60.483 47.826 0.00 6.98 32.57 4.42
13 14 3.674753 TGCGACATCTTCATGCATATACG 59.325 43.478 0.00 0.71 32.57 3.06
14 15 4.687948 ACTGCGACATCTTCATGCATATAC 59.312 41.667 0.00 0.00 34.66 1.47
15 16 4.886579 ACTGCGACATCTTCATGCATATA 58.113 39.130 0.00 0.00 34.66 0.86
16 17 3.736720 ACTGCGACATCTTCATGCATAT 58.263 40.909 0.00 0.00 34.66 1.78
17 18 3.183793 ACTGCGACATCTTCATGCATA 57.816 42.857 0.00 0.00 34.66 3.14
18 19 2.034104 ACTGCGACATCTTCATGCAT 57.966 45.000 0.00 0.00 34.66 3.96
19 20 1.733912 GAACTGCGACATCTTCATGCA 59.266 47.619 0.00 0.00 32.57 3.96
20 21 1.733912 TGAACTGCGACATCTTCATGC 59.266 47.619 0.00 0.00 32.57 4.06
21 22 3.002042 GGATGAACTGCGACATCTTCATG 59.998 47.826 0.00 0.00 41.50 3.07
22 23 3.201290 GGATGAACTGCGACATCTTCAT 58.799 45.455 0.00 10.15 41.50 2.57
23 24 2.621338 GGATGAACTGCGACATCTTCA 58.379 47.619 0.00 0.00 41.50 3.02
24 25 1.590238 CGGATGAACTGCGACATCTTC 59.410 52.381 0.00 1.14 41.93 2.87
25 26 1.645034 CGGATGAACTGCGACATCTT 58.355 50.000 0.00 0.00 41.93 2.40
26 27 0.807667 GCGGATGAACTGCGACATCT 60.808 55.000 0.00 0.00 41.93 2.90
27 28 1.638467 GCGGATGAACTGCGACATC 59.362 57.895 0.00 0.00 41.93 3.06
28 29 3.799753 GCGGATGAACTGCGACAT 58.200 55.556 0.00 0.00 41.93 3.06
44 45 1.746760 CTTTGTTGTGTCGCTTCTGC 58.253 50.000 0.00 0.00 0.00 4.26
45 46 1.746760 GCTTTGTTGTGTCGCTTCTG 58.253 50.000 0.00 0.00 0.00 3.02
46 47 0.304705 CGCTTTGTTGTGTCGCTTCT 59.695 50.000 0.00 0.00 0.00 2.85
47 48 1.262166 GCGCTTTGTTGTGTCGCTTC 61.262 55.000 0.00 0.00 42.19 3.86
48 49 1.298339 GCGCTTTGTTGTGTCGCTT 60.298 52.632 0.00 0.00 42.19 4.68
49 50 1.785041 ATGCGCTTTGTTGTGTCGCT 61.785 50.000 9.73 0.00 45.24 4.93
50 51 0.110419 TATGCGCTTTGTTGTGTCGC 60.110 50.000 9.73 0.00 45.23 5.19
51 52 2.308347 TTATGCGCTTTGTTGTGTCG 57.692 45.000 9.73 0.00 0.00 4.35
52 53 3.794028 TGTTTTATGCGCTTTGTTGTGTC 59.206 39.130 9.73 0.00 0.00 3.67
53 54 3.549873 GTGTTTTATGCGCTTTGTTGTGT 59.450 39.130 9.73 0.00 0.00 3.72
54 55 3.060607 GGTGTTTTATGCGCTTTGTTGTG 60.061 43.478 9.73 0.00 0.00 3.33
55 56 3.120041 GGTGTTTTATGCGCTTTGTTGT 58.880 40.909 9.73 0.00 0.00 3.32
56 57 3.380142 AGGTGTTTTATGCGCTTTGTTG 58.620 40.909 9.73 0.00 0.00 3.33
57 58 3.317993 AGAGGTGTTTTATGCGCTTTGTT 59.682 39.130 9.73 0.00 0.00 2.83
58 59 2.884639 AGAGGTGTTTTATGCGCTTTGT 59.115 40.909 9.73 0.00 0.00 2.83
82 83 3.725010 GCGGCTTCAGAATTAGTGTTTCG 60.725 47.826 0.00 0.00 0.00 3.46
92 93 2.158769 TCATGTATGGCGGCTTCAGAAT 60.159 45.455 11.43 0.00 0.00 2.40
123 124 2.640184 GCCCCACCTGTAAACTCATAC 58.360 52.381 0.00 0.00 0.00 2.39
127 128 0.252197 ATCGCCCCACCTGTAAACTC 59.748 55.000 0.00 0.00 0.00 3.01
128 129 0.035439 CATCGCCCCACCTGTAAACT 60.035 55.000 0.00 0.00 0.00 2.66
189 190 7.864108 TGAGAAGTCAGTTTTGATTTCAAGA 57.136 32.000 13.04 0.00 46.65 3.02
236 238 6.787957 AGTGTGTAGGCTATAGGGATAACAAT 59.212 38.462 0.00 0.00 0.00 2.71
379 384 2.871453 ACAAACCCTATTGAAACGCCT 58.129 42.857 0.00 0.00 34.38 5.52
397 402 5.013547 TCCTTTCCTTCTCAAAACACAACA 58.986 37.500 0.00 0.00 0.00 3.33
495 501 9.817809 ACAAAATAATATGCTTCGAAGAGAGTA 57.182 29.630 28.95 15.08 38.43 2.59
549 555 6.646653 CGGATGTATGTAGCACTGAAATACAT 59.353 38.462 6.36 6.36 43.60 2.29
565 571 6.721571 ACTTGTTACTCAAACGGATGTATG 57.278 37.500 0.00 0.00 41.30 2.39
577 585 8.627403 CCTCTAATCGGTATTACTTGTTACTCA 58.373 37.037 0.00 0.00 0.00 3.41
582 590 6.462628 GCTCCCTCTAATCGGTATTACTTGTT 60.463 42.308 0.00 0.00 0.00 2.83
593 601 3.692257 AATGATGCTCCCTCTAATCGG 57.308 47.619 0.00 0.00 0.00 4.18
594 602 5.355596 GGATAATGATGCTCCCTCTAATCG 58.644 45.833 0.00 0.00 0.00 3.34
656 668 1.132453 CATCTTGTCCTGCTGCATGTG 59.868 52.381 1.31 0.00 0.00 3.21
659 671 0.323087 TGCATCTTGTCCTGCTGCAT 60.323 50.000 1.31 0.00 37.88 3.96
701 713 2.996631 AGCTGGGAAATGCTAACTGAG 58.003 47.619 0.00 0.00 37.81 3.35
830 859 0.983378 AAAGCCGGCTACCTGGATCT 60.983 55.000 33.07 7.71 0.00 2.75
853 882 3.074412 CGGCATTTATAGAGGCGGAAAT 58.926 45.455 1.87 0.00 45.92 2.17
933 964 1.679898 GGGGACAGGTTGAGTGAGG 59.320 63.158 0.00 0.00 0.00 3.86
941 972 2.763645 GGTGTGTGGGGGACAGGTT 61.764 63.158 0.00 0.00 34.28 3.50
945 976 2.692741 TGTGGTGTGTGGGGGACA 60.693 61.111 0.00 0.00 0.00 4.02
946 977 2.203294 GTGTGGTGTGTGGGGGAC 60.203 66.667 0.00 0.00 0.00 4.46
947 978 2.692741 TGTGTGGTGTGTGGGGGA 60.693 61.111 0.00 0.00 0.00 4.81
948 979 2.203337 CTGTGTGGTGTGTGGGGG 60.203 66.667 0.00 0.00 0.00 5.40
959 990 0.877743 TCTCTGCGTCTCTCTGTGTG 59.122 55.000 0.00 0.00 0.00 3.82
960 991 1.539388 CTTCTCTGCGTCTCTCTGTGT 59.461 52.381 0.00 0.00 0.00 3.72
968 999 1.079956 CTGCTGCTTCTCTGCGTCT 60.080 57.895 0.00 0.00 41.87 4.18
983 1014 0.250640 CATAGCCATCACCCTCCTGC 60.251 60.000 0.00 0.00 0.00 4.85
988 1019 0.695462 TGAGCCATAGCCATCACCCT 60.695 55.000 0.00 0.00 41.25 4.34
990 1021 0.250640 CCTGAGCCATAGCCATCACC 60.251 60.000 0.00 0.00 41.25 4.02
999 1038 0.326522 TGCCTCTTCCCTGAGCCATA 60.327 55.000 0.00 0.00 33.02 2.74
1047 1086 1.153469 GAGGAGGCACAGCACTAGC 60.153 63.158 0.00 0.00 42.56 3.42
1050 1089 2.203907 AGGAGGAGGCACAGCACT 60.204 61.111 0.00 0.00 0.00 4.40
1194 1253 2.249844 AATAATACGGAGCAACGGGG 57.750 50.000 5.09 0.00 38.39 5.73
1210 1272 3.181479 GCACCACATGAGACGAGGTAATA 60.181 47.826 0.00 0.00 0.00 0.98
1229 1291 1.532090 CCGTAGATCAGAGACACGCAC 60.532 57.143 0.00 0.00 0.00 5.34
1239 1301 0.537188 AACACTGCCCCGTAGATCAG 59.463 55.000 0.00 0.00 0.00 2.90
1250 1312 0.875059 GGTTGTAGCTGAACACTGCC 59.125 55.000 11.35 1.90 0.00 4.85
1471 1538 2.033299 CAGCTCGCTTTTCTTGAAACCA 59.967 45.455 0.00 0.00 0.00 3.67
1480 1547 1.131420 CAGTCGCAGCTCGCTTTTC 59.869 57.895 6.58 0.00 39.08 2.29
1487 1554 3.922893 GCATCGCAGTCGCAGCTC 61.923 66.667 0.00 0.00 38.40 4.09
1495 1562 2.110967 GCACAGATGGCATCGCAGT 61.111 57.895 21.01 17.38 0.00 4.40
1538 1605 1.967066 AGGAGTCACTGAGTTCCACAG 59.033 52.381 4.75 0.00 40.68 3.66
1565 1653 1.298863 CACGGGGCGTACACTATCG 60.299 63.158 0.00 0.00 38.32 2.92
1591 1679 6.313905 GTCATGTTAACAACTCAGGGATACAG 59.686 42.308 13.23 0.00 39.74 2.74
1592 1680 6.170506 GTCATGTTAACAACTCAGGGATACA 58.829 40.000 13.23 0.00 39.74 2.29
1593 1681 6.092259 GTGTCATGTTAACAACTCAGGGATAC 59.908 42.308 13.23 6.70 0.00 2.24
1594 1682 6.170506 GTGTCATGTTAACAACTCAGGGATA 58.829 40.000 13.23 0.00 0.00 2.59
1595 1683 5.003804 GTGTCATGTTAACAACTCAGGGAT 58.996 41.667 13.23 0.00 0.00 3.85
1616 1704 1.947013 CACACTGCTGGCTTCTGTG 59.053 57.895 12.28 12.28 38.71 3.66
1637 1725 4.509230 CACATCGGTCTCTGTATCAATTGG 59.491 45.833 5.42 0.00 0.00 3.16
1646 1734 3.838565 AGGATATCACATCGGTCTCTGT 58.161 45.455 4.83 0.00 0.00 3.41
1657 1745 6.154534 TCTCTTCCGAAAAGAAGGATATCACA 59.845 38.462 4.83 0.00 42.94 3.58
1724 1818 0.539986 ATGCGTTACCTACCACCCTG 59.460 55.000 0.00 0.00 0.00 4.45
1749 1843 1.749609 GCCGGCGATCGTTCTTACAC 61.750 60.000 12.58 0.00 37.11 2.90
1754 1848 2.586079 CATGCCGGCGATCGTTCT 60.586 61.111 23.90 0.00 37.11 3.01
1772 1866 2.299297 CCAGTCCGAGGTTCTTTACTGT 59.701 50.000 0.00 0.00 34.02 3.55
1813 1907 0.610174 TGGCTCTCTGTGCTTACTGG 59.390 55.000 0.00 0.00 0.00 4.00
1819 1913 0.908656 AGACCATGGCTCTCTGTGCT 60.909 55.000 13.04 0.00 0.00 4.40
1842 1936 4.274147 TGCCTAATTGGAATTTCGCCTAA 58.726 39.130 0.00 0.00 38.35 2.69
1862 1956 0.237761 CAAAGCTGACTGTGAGCTGC 59.762 55.000 22.15 5.70 46.32 5.25
1938 3450 1.944709 GTGTGGGCGTTAGTGTTTCTT 59.055 47.619 0.00 0.00 0.00 2.52
1939 3451 1.134340 TGTGTGGGCGTTAGTGTTTCT 60.134 47.619 0.00 0.00 0.00 2.52
1940 3452 1.301423 TGTGTGGGCGTTAGTGTTTC 58.699 50.000 0.00 0.00 0.00 2.78
1941 3453 1.606668 CATGTGTGGGCGTTAGTGTTT 59.393 47.619 0.00 0.00 0.00 2.83
1942 3454 1.234821 CATGTGTGGGCGTTAGTGTT 58.765 50.000 0.00 0.00 0.00 3.32
1943 3455 0.107831 ACATGTGTGGGCGTTAGTGT 59.892 50.000 0.00 0.00 0.00 3.55
1944 3456 0.516877 CACATGTGTGGGCGTTAGTG 59.483 55.000 18.03 0.00 42.10 2.74
1945 3457 2.927004 CACATGTGTGGGCGTTAGT 58.073 52.632 18.03 0.00 42.10 2.24
1954 3466 2.256158 CAAGCGCCCACATGTGTG 59.744 61.111 23.79 14.60 45.23 3.82
1955 3467 3.673484 GCAAGCGCCCACATGTGT 61.673 61.111 23.79 2.40 0.00 3.72
1956 3468 2.877360 GATGCAAGCGCCCACATGTG 62.877 60.000 19.31 19.31 37.32 3.21
1957 3469 2.677524 ATGCAAGCGCCCACATGT 60.678 55.556 2.29 0.00 37.32 3.21
1958 3470 2.103538 GATGCAAGCGCCCACATG 59.896 61.111 2.29 0.00 37.32 3.21
1959 3471 2.044650 AGATGCAAGCGCCCACAT 60.045 55.556 2.29 4.82 37.32 3.21
1960 3472 2.747460 GAGATGCAAGCGCCCACA 60.747 61.111 2.29 0.00 37.32 4.17
1961 3473 3.869272 CGAGATGCAAGCGCCCAC 61.869 66.667 2.29 0.00 37.32 4.61
1972 3484 2.512286 ATGCGTGTGGGCGAGATG 60.512 61.111 0.00 0.00 35.06 2.90
1973 3485 2.512286 CATGCGTGTGGGCGAGAT 60.512 61.111 0.00 0.00 35.06 2.75
1974 3486 4.758251 CCATGCGTGTGGGCGAGA 62.758 66.667 4.96 0.00 35.55 4.04
1975 3487 4.758251 TCCATGCGTGTGGGCGAG 62.758 66.667 4.96 0.00 39.80 5.03
1976 3488 4.094646 ATCCATGCGTGTGGGCGA 62.095 61.111 4.96 0.00 39.80 5.54
1977 3489 3.576356 GATCCATGCGTGTGGGCG 61.576 66.667 4.96 0.00 39.80 6.13
1978 3490 3.211963 GGATCCATGCGTGTGGGC 61.212 66.667 6.95 0.00 39.80 5.36
1979 3491 2.896854 CGGATCCATGCGTGTGGG 60.897 66.667 13.41 0.00 39.80 4.61
1980 3492 3.576356 GCGGATCCATGCGTGTGG 61.576 66.667 13.41 0.40 43.82 4.17
1981 3493 2.109538 GATGCGGATCCATGCGTGTG 62.110 60.000 13.41 0.00 43.82 3.82
1982 3494 1.889105 GATGCGGATCCATGCGTGT 60.889 57.895 13.41 0.00 43.82 4.49
1983 3495 2.610694 GGATGCGGATCCATGCGTG 61.611 63.158 29.04 0.00 46.93 5.34
1984 3496 2.281070 GGATGCGGATCCATGCGT 60.281 61.111 29.04 9.39 46.93 5.24
1990 3502 0.742990 TCACAAACGGATGCGGATCC 60.743 55.000 24.93 24.93 44.54 3.36
1991 3503 0.652592 CTCACAAACGGATGCGGATC 59.347 55.000 12.44 8.63 0.00 3.36
1992 3504 1.369091 GCTCACAAACGGATGCGGAT 61.369 55.000 12.44 0.00 0.00 4.18
1993 3505 2.032634 GCTCACAAACGGATGCGGA 61.033 57.895 12.44 0.00 0.00 5.54
1994 3506 2.480555 GCTCACAAACGGATGCGG 59.519 61.111 12.44 0.00 0.00 5.69
1995 3507 2.096406 CGCTCACAAACGGATGCG 59.904 61.111 4.58 4.58 37.57 4.73
1996 3508 2.202349 GCGCTCACAAACGGATGC 60.202 61.111 0.00 0.00 0.00 3.91
1997 3509 0.168788 AATGCGCTCACAAACGGATG 59.831 50.000 9.73 0.00 39.53 3.51
1998 3510 1.732941 TAATGCGCTCACAAACGGAT 58.267 45.000 9.73 0.00 42.39 4.18
1999 3511 1.514003 TTAATGCGCTCACAAACGGA 58.486 45.000 9.73 0.00 0.00 4.69
2000 3512 2.095853 AGATTAATGCGCTCACAAACGG 59.904 45.455 9.73 0.00 0.00 4.44
2001 3513 3.389687 AGATTAATGCGCTCACAAACG 57.610 42.857 9.73 0.00 0.00 3.60
2002 3514 3.853671 CCAAGATTAATGCGCTCACAAAC 59.146 43.478 9.73 0.00 0.00 2.93
2003 3515 3.673052 GCCAAGATTAATGCGCTCACAAA 60.673 43.478 9.73 0.00 0.00 2.83
2004 3516 2.159393 GCCAAGATTAATGCGCTCACAA 60.159 45.455 9.73 0.00 0.00 3.33
2005 3517 1.401552 GCCAAGATTAATGCGCTCACA 59.598 47.619 9.73 0.00 0.00 3.58
2006 3518 1.401552 TGCCAAGATTAATGCGCTCAC 59.598 47.619 9.73 0.00 0.00 3.51
2007 3519 1.748950 TGCCAAGATTAATGCGCTCA 58.251 45.000 9.73 0.00 0.00 4.26
2008 3520 2.033801 ACATGCCAAGATTAATGCGCTC 59.966 45.455 9.73 0.00 0.00 5.03
2009 3521 2.026641 ACATGCCAAGATTAATGCGCT 58.973 42.857 9.73 0.00 0.00 5.92
2010 3522 2.497107 ACATGCCAAGATTAATGCGC 57.503 45.000 0.00 0.00 0.00 6.09
2011 3523 5.783100 AAAAACATGCCAAGATTAATGCG 57.217 34.783 0.00 0.00 0.00 4.73
2012 3524 7.674705 GCACTAAAAACATGCCAAGATTAATGC 60.675 37.037 0.00 0.00 33.06 3.56
2013 3525 7.678226 GCACTAAAAACATGCCAAGATTAATG 58.322 34.615 0.00 0.00 33.06 1.90
2014 3526 7.832503 GCACTAAAAACATGCCAAGATTAAT 57.167 32.000 0.00 0.00 33.06 1.40
2024 3536 4.157656 TCCTATGTGGCACTAAAAACATGC 59.842 41.667 19.83 0.00 38.68 4.06
2025 3537 5.415701 AGTCCTATGTGGCACTAAAAACATG 59.584 40.000 19.83 0.00 35.07 3.21
2026 3538 5.415701 CAGTCCTATGTGGCACTAAAAACAT 59.584 40.000 19.83 4.46 37.11 2.71
2027 3539 4.759693 CAGTCCTATGTGGCACTAAAAACA 59.240 41.667 19.83 0.00 35.26 2.83
2028 3540 4.156008 CCAGTCCTATGTGGCACTAAAAAC 59.844 45.833 19.83 11.38 35.26 2.43
2029 3541 4.331968 CCAGTCCTATGTGGCACTAAAAA 58.668 43.478 19.83 0.00 35.26 1.94
2030 3542 3.308117 CCCAGTCCTATGTGGCACTAAAA 60.308 47.826 19.83 0.00 35.26 1.52
2031 3543 2.238646 CCCAGTCCTATGTGGCACTAAA 59.761 50.000 19.83 0.00 35.26 1.85
2032 3544 1.837439 CCCAGTCCTATGTGGCACTAA 59.163 52.381 19.83 5.76 35.26 2.24
2033 3545 1.496060 CCCAGTCCTATGTGGCACTA 58.504 55.000 19.83 5.69 35.26 2.74
2034 3546 1.915078 GCCCAGTCCTATGTGGCACT 61.915 60.000 19.83 6.99 41.76 4.40
2035 3547 1.452108 GCCCAGTCCTATGTGGCAC 60.452 63.158 11.55 11.55 41.76 5.01
2036 3548 1.616327 AGCCCAGTCCTATGTGGCA 60.616 57.895 0.00 0.00 44.60 4.92
2037 3549 1.153086 CAGCCCAGTCCTATGTGGC 60.153 63.158 0.00 0.00 42.48 5.01
2038 3550 1.274703 ACCAGCCCAGTCCTATGTGG 61.275 60.000 0.00 0.00 37.10 4.17
2039 3551 0.107508 CACCAGCCCAGTCCTATGTG 60.108 60.000 0.00 0.00 0.00 3.21
2040 3552 0.547712 ACACCAGCCCAGTCCTATGT 60.548 55.000 0.00 0.00 0.00 2.29
2041 3553 0.107508 CACACCAGCCCAGTCCTATG 60.108 60.000 0.00 0.00 0.00 2.23
2042 3554 0.547712 ACACACCAGCCCAGTCCTAT 60.548 55.000 0.00 0.00 0.00 2.57
2043 3555 1.152118 ACACACCAGCCCAGTCCTA 60.152 57.895 0.00 0.00 0.00 2.94
2044 3556 2.448542 ACACACCAGCCCAGTCCT 60.449 61.111 0.00 0.00 0.00 3.85
2045 3557 2.281761 CACACACCAGCCCAGTCC 60.282 66.667 0.00 0.00 0.00 3.85
2046 3558 2.281761 CCACACACCAGCCCAGTC 60.282 66.667 0.00 0.00 0.00 3.51
2047 3559 3.889692 CCCACACACCAGCCCAGT 61.890 66.667 0.00 0.00 0.00 4.00
2050 3562 4.684134 ATGCCCACACACCAGCCC 62.684 66.667 0.00 0.00 0.00 5.19
2051 3563 2.601367 AATGCCCACACACCAGCC 60.601 61.111 0.00 0.00 0.00 4.85
2052 3564 1.902918 TGAATGCCCACACACCAGC 60.903 57.895 0.00 0.00 0.00 4.85
2053 3565 1.959085 GTGAATGCCCACACACCAG 59.041 57.895 0.00 0.00 37.04 4.00
2054 3566 4.172625 GTGAATGCCCACACACCA 57.827 55.556 0.00 0.00 37.04 4.17
2055 3567 3.365535 GGTGAATGCCCACACACC 58.634 61.111 0.00 0.00 44.23 4.16
2079 3591 0.820074 TGGTAAAACAGCCGTGTGGG 60.820 55.000 0.00 0.00 36.84 4.61
2080 3592 0.309612 GTGGTAAAACAGCCGTGTGG 59.690 55.000 0.00 0.00 36.84 4.17
2081 3593 1.018148 TGTGGTAAAACAGCCGTGTG 58.982 50.000 0.00 0.00 36.84 3.82
2082 3594 1.018910 GTGTGGTAAAACAGCCGTGT 58.981 50.000 0.00 0.00 39.19 4.49
2083 3595 0.041663 CGTGTGGTAAAACAGCCGTG 60.042 55.000 0.00 0.00 0.00 4.94
2084 3596 1.161563 CCGTGTGGTAAAACAGCCGT 61.162 55.000 0.00 0.00 0.00 5.68
2085 3597 1.572447 CCGTGTGGTAAAACAGCCG 59.428 57.895 0.00 0.00 0.00 5.52
2086 3598 0.535553 TCCCGTGTGGTAAAACAGCC 60.536 55.000 0.00 0.00 34.77 4.85
2087 3599 0.872388 CTCCCGTGTGGTAAAACAGC 59.128 55.000 0.00 0.00 34.77 4.40
2088 3600 1.519408 CCTCCCGTGTGGTAAAACAG 58.481 55.000 0.00 0.00 34.77 3.16
2089 3601 0.108963 CCCTCCCGTGTGGTAAAACA 59.891 55.000 0.00 0.00 34.77 2.83
2090 3602 0.607217 CCCCTCCCGTGTGGTAAAAC 60.607 60.000 0.00 0.00 34.77 2.43
2091 3603 1.762471 CCCCTCCCGTGTGGTAAAA 59.238 57.895 0.00 0.00 34.77 1.52
2092 3604 2.897762 GCCCCTCCCGTGTGGTAAA 61.898 63.158 0.00 0.00 34.77 2.01
2093 3605 3.324108 GCCCCTCCCGTGTGGTAA 61.324 66.667 0.00 0.00 34.77 2.85
2109 3621 2.909965 TGAAGCCCACAAACCGGC 60.910 61.111 0.00 0.00 46.09 6.13
2110 3622 2.919494 GCTGAAGCCCACAAACCGG 61.919 63.158 0.00 0.00 34.31 5.28
2111 3623 2.133742 CTGCTGAAGCCCACAAACCG 62.134 60.000 0.00 0.00 41.18 4.44
2112 3624 1.109323 ACTGCTGAAGCCCACAAACC 61.109 55.000 0.00 0.00 41.18 3.27
2113 3625 0.746659 AACTGCTGAAGCCCACAAAC 59.253 50.000 0.00 0.00 41.18 2.93
2114 3626 1.032014 GAACTGCTGAAGCCCACAAA 58.968 50.000 0.00 0.00 41.18 2.83
2115 3627 1.165907 CGAACTGCTGAAGCCCACAA 61.166 55.000 0.00 0.00 41.18 3.33
2116 3628 1.597854 CGAACTGCTGAAGCCCACA 60.598 57.895 0.00 0.00 41.18 4.17
2117 3629 2.970974 GCGAACTGCTGAAGCCCAC 61.971 63.158 0.00 0.00 41.73 4.61
2118 3630 2.669569 GCGAACTGCTGAAGCCCA 60.670 61.111 0.00 0.00 41.73 5.36
2119 3631 3.435186 GGCGAACTGCTGAAGCCC 61.435 66.667 14.09 0.00 45.43 5.19
2120 3632 3.435186 GGGCGAACTGCTGAAGCC 61.435 66.667 15.78 15.78 46.51 4.35
2121 3633 2.669569 TGGGCGAACTGCTGAAGC 60.670 61.111 0.00 0.00 45.43 3.86
2122 3634 1.597854 TGTGGGCGAACTGCTGAAG 60.598 57.895 0.00 0.00 45.43 3.02
2123 3635 1.891919 GTGTGGGCGAACTGCTGAA 60.892 57.895 0.00 0.00 45.43 3.02
2124 3636 2.280797 GTGTGGGCGAACTGCTGA 60.281 61.111 0.00 0.00 45.43 4.26
2125 3637 1.723608 TTTGTGTGGGCGAACTGCTG 61.724 55.000 0.00 0.00 45.43 4.41
2126 3638 1.034838 TTTTGTGTGGGCGAACTGCT 61.035 50.000 0.00 0.00 45.43 4.24
2127 3639 0.031994 ATTTTGTGTGGGCGAACTGC 59.968 50.000 0.00 0.00 45.38 4.40
2128 3640 1.066908 ACATTTTGTGTGGGCGAACTG 59.933 47.619 0.00 0.00 40.28 3.16
2129 3641 1.398692 ACATTTTGTGTGGGCGAACT 58.601 45.000 0.00 0.00 40.28 3.01
2130 3642 3.957383 ACATTTTGTGTGGGCGAAC 57.043 47.368 0.00 0.00 40.28 3.95
2140 3652 3.214328 GGAGTCTGTCCACACATTTTGT 58.786 45.455 0.00 0.00 46.10 2.83
2141 3653 3.904136 GGAGTCTGTCCACACATTTTG 57.096 47.619 0.00 0.00 46.10 2.44
2151 3663 0.903236 GGGTGTTAGGGAGTCTGTCC 59.097 60.000 0.00 0.00 46.10 4.02
2152 3664 1.275573 GTGGGTGTTAGGGAGTCTGTC 59.724 57.143 0.00 0.00 0.00 3.51
2153 3665 1.349067 GTGGGTGTTAGGGAGTCTGT 58.651 55.000 0.00 0.00 0.00 3.41
2154 3666 1.002087 GTGTGGGTGTTAGGGAGTCTG 59.998 57.143 0.00 0.00 0.00 3.51
2155 3667 1.349067 GTGTGGGTGTTAGGGAGTCT 58.651 55.000 0.00 0.00 0.00 3.24
2156 3668 0.037605 CGTGTGGGTGTTAGGGAGTC 60.038 60.000 0.00 0.00 0.00 3.36
2157 3669 0.761702 ACGTGTGGGTGTTAGGGAGT 60.762 55.000 0.00 0.00 0.00 3.85
2158 3670 0.320421 CACGTGTGGGTGTTAGGGAG 60.320 60.000 7.58 0.00 33.24 4.30
2159 3671 1.749665 CACGTGTGGGTGTTAGGGA 59.250 57.895 7.58 0.00 33.24 4.20
2160 3672 4.371975 CACGTGTGGGTGTTAGGG 57.628 61.111 7.58 0.00 33.24 3.53
2170 3682 0.438445 CGATAAGTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
2171 3683 0.669318 CCGATAAGTGCCACACGTGT 60.669 55.000 17.22 17.22 39.64 4.49
2172 3684 1.966493 GCCGATAAGTGCCACACGTG 61.966 60.000 15.48 15.48 39.64 4.49
2173 3685 1.740296 GCCGATAAGTGCCACACGT 60.740 57.895 0.00 0.00 39.64 4.49
2174 3686 2.798501 CGCCGATAAGTGCCACACG 61.799 63.158 0.00 0.00 39.64 4.49
2175 3687 1.693083 GACGCCGATAAGTGCCACAC 61.693 60.000 0.00 0.00 34.10 3.82
2176 3688 1.447140 GACGCCGATAAGTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
2177 3689 2.171725 GGACGCCGATAAGTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
2178 3690 2.185867 GGACGCCGATAAGTGCCA 59.814 61.111 0.00 0.00 0.00 4.92
2179 3691 1.883084 CTGGACGCCGATAAGTGCC 60.883 63.158 0.00 0.00 0.00 5.01
2180 3692 1.883084 CCTGGACGCCGATAAGTGC 60.883 63.158 0.00 0.00 0.00 4.40
2181 3693 0.742505 TACCTGGACGCCGATAAGTG 59.257 55.000 0.00 0.00 0.00 3.16
2182 3694 1.030457 CTACCTGGACGCCGATAAGT 58.970 55.000 0.00 0.00 0.00 2.24
2183 3695 0.318784 GCTACCTGGACGCCGATAAG 60.319 60.000 0.00 0.00 0.00 1.73
2184 3696 1.737816 GCTACCTGGACGCCGATAA 59.262 57.895 0.00 0.00 0.00 1.75
2185 3697 2.198287 GGCTACCTGGACGCCGATA 61.198 63.158 13.47 0.00 33.64 2.92
2186 3698 3.537874 GGCTACCTGGACGCCGAT 61.538 66.667 13.47 0.00 33.64 4.18
2187 3699 2.914756 TATGGCTACCTGGACGCCGA 62.915 60.000 20.21 11.69 46.67 5.54
2188 3700 2.495409 TATGGCTACCTGGACGCCG 61.495 63.158 20.21 0.00 46.67 6.46
2189 3701 1.069258 GTATGGCTACCTGGACGCC 59.931 63.158 19.29 19.29 44.02 5.68
2190 3702 0.177141 TTGTATGGCTACCTGGACGC 59.823 55.000 0.00 1.68 0.00 5.19
2191 3703 1.202533 CCTTGTATGGCTACCTGGACG 60.203 57.143 0.00 0.00 0.00 4.79
2192 3704 1.141053 CCCTTGTATGGCTACCTGGAC 59.859 57.143 0.00 0.00 0.00 4.02
2193 3705 1.274184 ACCCTTGTATGGCTACCTGGA 60.274 52.381 0.00 0.00 0.00 3.86
2194 3706 1.213296 ACCCTTGTATGGCTACCTGG 58.787 55.000 0.00 0.00 0.00 4.45
2198 3710 5.093849 TGACTAAACCCTTGTATGGCTAC 57.906 43.478 0.00 0.00 0.00 3.58
2201 3713 4.332828 ACTTGACTAAACCCTTGTATGGC 58.667 43.478 0.00 0.00 0.00 4.40
2236 3748 5.007430 CACATCCTACATTCTGAGTTCATGC 59.993 44.000 0.00 0.00 0.00 4.06
2237 3749 5.007430 GCACATCCTACATTCTGAGTTCATG 59.993 44.000 0.00 0.00 0.00 3.07
2242 3755 3.133721 GGAGCACATCCTACATTCTGAGT 59.866 47.826 0.00 0.00 45.64 3.41
2314 3828 6.931790 ACTCCAATAGTATGCATCTCATCT 57.068 37.500 0.19 0.00 36.36 2.90
2353 3867 5.013391 AGGATGCATCTTTGGACCAAATTTT 59.987 36.000 25.28 5.48 32.70 1.82
2354 3868 4.533311 AGGATGCATCTTTGGACCAAATTT 59.467 37.500 25.28 7.91 32.70 1.82
2355 3869 4.098894 AGGATGCATCTTTGGACCAAATT 58.901 39.130 25.28 8.26 32.70 1.82
2356 3870 3.716431 AGGATGCATCTTTGGACCAAAT 58.284 40.909 25.28 4.13 32.70 2.32
2357 3871 3.173953 AGGATGCATCTTTGGACCAAA 57.826 42.857 25.28 18.59 0.00 3.28
2358 3872 2.827322 CAAGGATGCATCTTTGGACCAA 59.173 45.455 32.95 1.69 39.40 3.67
2396 3910 2.029828 TGTTTTGTGCACCGAACTTGTT 60.030 40.909 24.10 0.00 0.00 2.83
2401 3915 2.116366 GACATGTTTTGTGCACCGAAC 58.884 47.619 15.69 18.22 39.18 3.95
2421 3935 5.812642 AGTACGAAATGAGTGGCTAAATGAG 59.187 40.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.