>input_sequence_79805
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------------------------------------------------------------------------------AT
GGCTCAGGGAAGAGGCAGTGCGGCGCAGGGCTTCGCCCTCGGCTTGCTAGTGCTGTGCCTCCTCCTCGGCGCCGACACCG
CCGGCGCCGCCACCTACAACGTCGACTGGTCGTTCGCCTCCGGCAGCTGGCCCATCGGCAAGAGCTTCCGCGCAGGGGAC
GTCCTCGGTGAGTGACCA--------------------AGTCGATTGCCCCTCCCC---GTTGCTCCGTATTATTACCTC
GTCTCATGTGGTGCGTGTCTCTGATCTACGGGGCAGTGTTCAGCTACAACCCGGCCGTGCACAACGTGGTGGCGGTGGAC
GCCGGCGGCTACAACAGCTGCCGGGGCTCCGGCGCGACGCACACCTACACCTCGGGGAGCGACCACGTCCCGCTCGTCCC
CGGGACGAACTACTTCATCTGCAGCCTCAGCAGCCACTGCGGGCTCGGGATGAAGATGGCCGTCACTGCAAACTGA----
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>chr4B_1_TraesCS4B01G218700
TAGGTCGTCCGAGCGTATATGCATGAAGATGTCGCAGTTCATCCGCAGAAGCGACACAACAAAGCGCATAAAACACCTCT
GGCGAAACACTAATTCTGAAGCCGCCATACATGAGATCTGACAGTATGAGTTTACAGGTGGGGCGATGTCGCATGCCTTG
GCGTTCCACGTCCACTCGTCCCTCTCCTTTCTTGAAATCAAAACTGACTTCT-CAATTTTGTTAGAAAGTTTGGCTTATT
GTTATCCCTATAGCCTACACACTTGAATTTGAAGTTAAATGTCACATTCCTCCA---AAAAAAAGTTAGATGCCCTGCAA
CAAAGAAGAATTTGAAGTTAAATGAGGTAATGGAACATTCCACAAAATTTAGCTCTTCATTTAAGGCGTTTCAATAGGGT
TTGTTGTGTTTTGAGAAGGAA-AGGAGTCATTGGTGTGTGCATTGCTAGAACAAAATTAGGATAAATCTTAGTGGATTGA
GATTTTTCTACGATTTTTTTTACTCTCTTCGAAGCATATTATTTTGTCGCTCAAATAAAAATAAATGTATCTAGATGTAT
TTCAGTGCTACATA--CATCCGTTTGAGTAACAAGTAATACCGATTAGAGGGAGCATCATTATCCCAAGAGAAGGAATTG
GCTGAGA-ATGTAATCTTTCTTTA---CACATGCAGCAGGACAAGATGCATGTCCAAAAAGCTATACCTAAGCTCAGTTA
GCATTTCCCAGCTTTTGTGGATCCATGGACGGCGTGCGCTACCACCCACGCCATTCGGTACA------ACTACTACTCCA
TTTTGGTATAA---CTACAGTAATGTTCTGCCG--------TCTATGGACTTGTGATTAGATCCAGGTAGCCGGCTTTGC
CATTTCCGCCTCTATAAATGCCGCCCTACGCTCTCGTGCACAGCAAAACCCAACGGAACTATAACTAC--AGTCACTCTG
CTCCCTCACTCAACCTGTCCCCCACACACCACACAGAGAGACGCAGAGAAGCAGCAGGAGG--------GTGATGGCTAT
GGCTCAGGGAAGAGGCAGTGCGGCGCAGGGCTTCGCCCTCGGCTTGCTAGTGCTGTGCCTCCTCCTCGGCGCCGACACCG
CCGGCGCCGCCACCTACAACGTCGACTGGTCGTTCGCCTCCGGCAGCTGGCCCATCGGCAAGAGCTTCCGCGCAGGGGAC
GTCCTCGGTGAGTGACCA--------------------AGTCGATTGCCCCTCCCC---GTTGCTCCGTATTATTACCTC
GTCTCATGTGGTGCGTGTCTCTGATCTACGGGGCAGTGTTCAGCTACAACCCGGCCGTGCACAACGTGGTGGCGGTGGAC
GCCGGCGGCTACAACAGCTGCCGGGGCTCCGGCGCGACGCACACCTACACCTCGGGGAGCGACCACGTCCCGCTCGTCCC
CGGGACGAACTACTTCATCTGCAGCCTCAGCAGCCACTGCGGGCTCGGGATGAAGATGGCCGTCACTGCAAACTGAAGC-
----TAGCTGCAGCTTCTGGTTTCAAGAAAAGCGAGCTGCGACTGCGATGCCATCTGTGCGCATGTGAAAACATCAATAA
AGTGCTGTGGAACTCAGTGACTCCT---------------------AGTATGCGATAGTGTACGCCCCGTGTGTTGTACT
GTATCCCTGAGTTGTTAACATGACACAGAAGCCAGCAGTGTGCACCAATTGATACAGAGACCGAT---GTGATATCCTTC
TTTTCGGAAGA---GAAAAATACAGCAGCCAGTAGGCATGTGTTATGTGTGGATATGCAGGGTGGTAGGTAACGCATGAT
GTGTGTAAGAACGATCGCCGGCATGACAGTAAAGAACCTCGGACTGGTTTGTTTAATTTGTTTCCACCAGTAAGCACAGA
GAGCCATGGTCTGGTTTAGGCGAAATTCCAATTAGGCAGCTCACAGTCAGCTTTGAACCACTCTCACTCTTGGTCA----
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------------------------------------------------------TATTTCTTTTGATTTTTCCATACAGA
ATTTTTCAAAAGAAACACTAACGCCCACACATGTGGGCGCTTGCATCTCGCCCACACGCATGGATCCGCATCCGTTTGTG
AGCGCATTAATCTTGGCATGTTTTTAGTGCCACATAGGACTGGGCTGGTGTGTGGGCATTCACCCGGTCGCCCACACGGC
TGTTTTACCACACGGGAGGGGCCGGTTTGTGGGCTTCAGCAGTTCGCCCACACAAAATGTGTGGACAGACTCCCTAACAC
CCACACGTGTGGCACTTATCGGCGTCCAGGTAGCCATACAAGGGTTTAGTCAAGTCACGGTGACTCCGC-ATGAACTCAG
AATGTAGGATGTGCTCCTATCCTATCCTAATAAAATTAAATTTACATTGTCAAA-CCTCTTGAAAAAAGATGAGATGCAT
ACTATTGGAGTATTTTAGTTTCTTGCAAAATTTGGTCCAAAGATGCATCCTTGTGCCATGTGGAAAAGGAACAAGTTCGG
TGCACAAAACATGTCTCATTTAGCCACTCATTTCGTACTATTTTTTTT
>chr4D_60
-----------------------------------------------------------CAAAGCGCATAAAACACCTCT
GGTGAAACACTAGTTCTGAAGCCGCCATACATGAGATCTGACAATATTGGTTTACAGGTGGGGCGATGTCGCATGCCTTG
GCGTTCCTCGTCCACTCGTCCCTCTCCTTGCTTGAAATCAAAACTGACTTCTGCAATTTTGTTAGAAAGTTTGGCTTGTT
GTTATCCCTATAGCCTACACACTTGACTTTGAAGTTAAATGTCACATTCCTCCC----AAAAAAGTTAGATGCCCTGCAA
CAATGAAGAATTTGAAGTTAAATGAGGTAATCGAACATTCCACAAAATTTAGCTCTTCATTTAGGGTGTTTCAATAGGGT
TCGTTGTGTTTTGAGAAGGAATAGG-GTCATTGGTGTGTGCATTGATAGATCAAAATG-GGATAAATCTTAGTAGATTGA
GATTTTTCTATGATTTTTT-CACTCTCTTCGATCCATATTATTTTGTCGCTTAAATAAA------TGTATCAAGCTGCGT
TTCAGTGCTAGATA--CATCCGTTAAAGTGACAAGTAATATGGATCCGAGGGAGTATCATTATCCCAAGAGAAGGAATTG
GCCGAGAAATGTAATATTTCTTTA---TACTTGCAGTAGGACAAGATGCATGTCCAGAAAGTTACACCTAAGTTCAGTTA
GCATTTCCCAGCTTTTGAGGATCCATGGACGGCGTGCGCTACCACCCACGCCATTCGGCACA------ACTACTACTCCA
TTTTGGTATAA---CTACAGTAATGTGCTGCCG--------TCTATGGACTTGCGATTGGATCCAGGTAGCCGGCTTTGC
CCTTT---------------CCGCCCCACGCTCTCGTGCACAG----------------TATAGCTAC--AGTCACTCCA
-------------------CCCCACACACT-CACAGAGGGACGCAGAGAAGCACCAGGGGAGTT--------ATGGCAAT
GGCTCAGGGAAGAGGCAGTGCGGCGCAGGGCTTCACCCTCGGCTTCCTCGTGCTGTGCCTCCTCCTCGGCGCCGACACCG
CCGGCGCCGCCACCTACAACGTCGACTGGTCGTTCGCCGCCGGCAGCTGGCCCAGCGGCAAGAGCTTCCGCGCAGGGGAC
GTCCTCGGTGAGTGACCAGGCCGTCAGAAAGATGGCACAGTCGATTACTCCTTCCT---GTTGCTCCGTATCATTACCTC
GTCTCACGTGATGCGCGTCTTTGATCTACGGCGCAGTGTTCAGCTACAACCCGGCCGTGCACAACGTGGTGGCGGTGGAC
GCCGGCGGCTACAACAGCTGCCGGGGCTCCGGCGCGACGCACACCTACACCTCGGGGAGCGACCGCGTGACGCTCGTCCC
TGGGACGAACTACTTCATCTGCAGCCTCAGCGGCCACTGCGGGCTCGGGATGAAGATGGCCGTCACTGCAAACTGAAGC-
----TAGCTGCAGCTTCCGGTTTCAAAAAA-GCTAGCCGCGGCTGCGATGCCTTCTGTGCGCATGTGAAAACATCAATAA
AGTAAGTACTAGCGATCTAAACACTCTTATATTTCTTTACAGAGGGAGTATGTGATAGTGTACGCCCCGTGTGTTGTA--
---TCCCTGAGTTGCTAACATGATACAGAAGCCAGCAGTGTGCATCCATTGATGCGGAGACCGAGGACGTGATATCCTTC
TTTTCGGAAGAAAAAAAAAATACAGCAGCGAGTAGGCATGTGTTATGTGTGGATATGGAGGGTGGTAGGTAATGCATGAT
GTTTGTATGAACGATCGCCGGCATGGCAGTAAAGAACCTCGGACTGGTTTGTTTAATTTGTTTCCAACAGTACGCATAGA
GAGCCATGGTCTGGTCTAGGCGAAATTCCAATTAGCCAGCTCACAGTCAGCTTTGAACCACTCTCACTCTTGGTCATATT
TTTTTAATTTTCTTTTAGAAAAGGAGGTTAAACCCCGGCCTATGCATCAACCGATGCATGCAGCCATCTGTATTAATTAT
TTCACACAAAGGTCTAACAAGAATATACATCAATCCACCCGAAGCCACCACTCACACCTACAAACTTGATAATGTTGAGT
GATCTCACTCCCCATATCTAAAATCGATGTCGTCGTCGATCCATCCACATAATGACTCACACCTACAAACTTGATAATGT
GGAGTGATCTCACTCCTCATATCTAAAATCGATGTCGTCGTCGATCCATCCACATAATGTATCGGGATCAACATCCGGTG
CAGCAGACATAAAGCGCATCCCACATGCATACGTTTTAGAAGCCGACATCATCATCGGAGCAATGACTCGTCTTCAGGAG
AGAGATCCAATCCTTACCAGTCCGGACATCCGTCGACGCCACCACAGCGCCCAACGGCACCACCGCCCTGCGCTCGTCCG
TCCAGATGCAAAGACTCTGGAAGATCTGTCGTGTGTAGCACCTGCCAACCAGGCATGACTCAGCGTAGCACCTGTCAGCC
ATGCATGACTTGACAGCTCCACCGATGCTCCGCGCAAGACGAATCCGCTCCACCTCCTGCCTCTGTCTTCCAGCGCTGCT
CCACAAACGATGCTCCCAAGAGAAACGGCACCGCAGTACTGCCATCGTCCGATCTGGAAGACCAGATCCTAGGGTTCCCC
CGAAGCAGCATGAGTAGGTCGACAACAGTTACATGACGATGCCTTCATCAAGCTAATAGCGCAAAAACGCCGCCATCGCC
CGCCAACGGCTCGGTTTTCACCGGCAACTATGTCTCCCCAACTCGCAGTCGGCGCTAGATGACGGGTCTTGAGATCTGAC
CACCCAGCCTCTGGCTGACCACCTCCGGCGAAGGAGGTGGCCACCACCGCCACGCCCAGGACCAGATCCCCCAATGTCCT
CGTGTCGCAGGTCGAGCCCGGTGGCAGCATGCCATTGACGGAACAAGGATGGTACACGACAGCAGCTTGTGTGGCCCGCC
TAAGCCCATCTAGGATCAGATCGGGCACCCAAGCCGCCGCCGTAGGACCCGTTGCCGTACGTCGCCGCTTGCATGTCGAA
ACTGGCTGCCGCTGCCATATGTCCGACCAGCGTGGACCGCCGCCCGCCTGACTGGATCTGGCCGAGAAGAAGCGCCGCCG
CCACCGCTGCGTGCACAGGCTTTGCCTGCAAGCCCCTGGCGCCAGCGGCGGTAGGGGAGATGGCGTTGGAGAGGACCGGA
GGAAGGGACGGGAGCGCTCCGGTGCGGCGCAGCGGCGCCACACGAGAACG-----GGGGTAGGGTTAGGGAGTGGTGAGG
TGTCCCTGGTGCTCTCCTACTGCCTCGACAGACCCTCTCTCTCCCTACTAGTCATATTTCTTTTGATCTTTCCATACATA
ATTTTTCAATG---------------------------------------------------------------------
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--------------------------CAGATACCCATACAAGGGTTTAGTCGAGTCACGGTGACTCCAAGATGAGCTCGG
AATGTAGGATGTGCCT-TATCCTATCTTAATAAAAGTAAATTTATATTGCCAAAACCTCTTAAA-AAGACGAAGTTGCAT
ACTATTGGAGTATTTTAGTTTCTTGC------TGGTCCAAAGATGCATCCTTGTGCCATGTGGAAAAGGCAAAAATTCGG
TGCAC-ATACATGTGTCATTTAGCCACTCATTTTGT------------
>chr4A_213
CATTTTTG------------------------------------------------------------------------
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------------------------------------------------------------GTTATAAAGTTTGCCTTGTT
CTTATCCCTATAGCCTACACACTTGAATTTGAAGTTAAATGTCACATTCCTCAAAAGAAAAAAAGTCAGATGCCCTGCAA
TAATGAAAAATTTGAACTTAAATGAGGTAATGGAACATTCCACAAAATTTAGTTCTTCATTTAGGGCGTTTCAATAGGGT
TCATTGTGTTTTGAGCAGGAATAGGAGTCATTGGTGTGTGCATTGACAGAACAA---------------------ATTGA
GATTTTTCTATGATTTTTTTCACTCTCTTCGATTCATATTATTTTGTCGCTCAAATAAA------TGTATCTAGCTGTAT
TTCAGTGCTAGATATACATCGGTTAGAGTGACAAGTAACATGGATGGGAGGGAGCATCATTATCCCAAGAGAAGGAATTG
GCTAAGAAATGTAATCTTTCTTTATACTACTTGCAGTAGGACAAGATGCATGTCCAGAAAGTTACACCTAAGTTCAGTTA
GCATTTCCCAGCTTTTGTGGATCCATGGACGGCGTGCGCTACCACCCACGCCATTCGGTACAGCTACTACTACTACTCCA
TTTTGGTATAATAACTACAGTAGTGCGCTGCCGTCTATCAGTCTATGGACTTGTGATTGGATCCAGGTAGCCGGCTTTGC
CCTTTCCGCCTCTATAAATGCCGCCCCACGCTCTCGTCCACAGCAAAACCCAACTGAGCTACGTATAACTAGTCACTCTG
CTCTCTCACTCCACCG------CACACACT-CACAGAGGGACGCAGAGAAGCACCAGGGGAGTCCGGGAGTGATGGCAAT
GGCTCAGGGAAGAGGCAGTGCGGCGCAGGGCTTCGCCCTCGGCTTCCTCGTGCTGTGCCTCCTCCTCGGCGCCGACACCG
CCGGCGCCGCCACCTACAACGTCGACTGGTCGTTCGCCGCCGGCAGCTGGCCCAGCCGCAAGACCTTCCGCGCAGGGGAC
GTCCTCGGTGAGTGACCAGGCCGTCAGAAAGATGGCACAGTCGATTACTCCTTCCCACCGTTGCTCCGTATCATCACCTC
GTCTCATGTGATGCGTGTCTTTGATCTACTGCGCAGTGTTCAGCTACAACCCGATCGTGCACAACGTGGTGGCGGTGGAC
GCCGGCGGCTACAACAGCTGCCGCGGCTCCGGCGCGACGCACACCTACACCTCGGGGAGCGACCGCGTGACCCTCGTCCC
CGGGACGAACTACTTCATCTGCAGCCTCAGCGGCCACTGCGGGCTCGGGATGAAGATGGCCGTCACTGCAAACTGAAGCG
AGTCTAGCTGCAGCTTCCGGTTTCAGAAAA-GCTAGCTGCGGCTGCGATGCCATCCGTGCGCATGTGAAAACATCAATAA
AGTGTTGTGGAACTCAGTGACTCC------------------------------------------CCGCGTGTTGTA--
---T-CCTGAGTTGTTAACATGATACAGAAGCCAGCAGTGTGCATCAATTGATGCAGAGACGGAG---GTGGTATCCTTC
TTTTCGGAAGGAAAGAAAAATACAGCAGCCAGTAGGCATGCGTTATGTGTGGATATGGAGGGTGGTAGGTAACGCATGAT
GTTTGTATGAACGATCGCCGGCATGGCAGTAAAGAACCTCGGACTGGTTTGTTTAATTTGTTTCCAACAGTACGCATAGG
GAGCCATGGTCTGATCTAGGCGAAATTCCAATTAGCCAGCTCACAGTCAGCTTTGAACCACTCTCACTCATGATCATA-T
TTTTTTATTTTCTTTTAGAAAAGAAGGTTATACCCCGGCATATGCATCAATCGATGCATGAAGCCATTTTTATTAGTTAT
TC--CACAAAAGTCTAACAGGAATATACATCAATCTACCCGAAGCCACCACTCACACCTACAAACTTGATAATGTGGAGT
GATCTCAATCCCCATATCTAAAATCGAT----------------------------------------------------
-------------------------------------------------CCACATAACGTATCGGAATCAACAGCTGGTG
TAGCAGACCTAAAGCGCATCCCATATGCACACGTTTTAGAAGCCGATATCATCATCGGAGCACTGACTCATCTTCCGGAG
AGAGATCCAATCCTTGCCAGTCCGGACATCCGTCGACGCCACTACAGTGCCCAACGGCACCACCGCCCTGCGCTCGTTCG
TCCAGATGCAAAGACTCTGAAAGATCTGTCGTGCGTAGCACCTGCCAACCAAGCATGACTCAGCGTAGCACCTGTCGGCC
AGGCATGACTTGACAGCTCCACCGATGCTCCGTGCAAGACGAAGCCGCTCCACCTCCTGCCTCTGTCTTCCAGCGCTGCT
CCACAAACGATGCTCCCAAGAGAAACGACACCGCAGTGCTGCCATCGTCCGATCTGGAAGACCAGATCCTAGGGTTCCCC
CGAAGCAGCATGAGTATGTCGACAACAGTTACACGGCGATGCCTTCATCAAGGTAATGGCGCAAAAACGCCGCCATCGCC
CCCAACC-GCTCGATTTTCACCGGCAATTATGTCTCCCCAACTCGCAGCCGACGCTAGATGACGGATCTTGAGATCTGAC
CACCCAACCTCAGGCCGACCACCTCCGACGAAGGAGGTGGCCACCACCGCCACGCCTAGGGCCGGATCCCCTGATGTCCT
CGTGTCGCAGGTCGAGCCCAGTGGCAGCATGCCATTGACGAAACAAGGATGGTACACGACAGCAGCTTGTGCGGCCCGCC
TAAGCCCATCTAGGATCAGATTGGGCACCCAAGCCGTCGTCGTAGGACCCGTTGTCGTATGCCGCTGCCTGCATGCCGAA
ACTGGATGCCACTGCCGTATGTCCGGCCGGCGTGGACCGCCGCCCCCCTGACTGGATCTGGCCGAGAAGAAGCGCCGCCG
CCACCGCTACGCGCACAGGCTTTGCCTGCAAGCCCCTGGCACCGGCGGCGATAGGGGAGATGGCGTTGGAGAGGACCAGA
GGAAGGGGCGGGAGCGGTCCGGTGCGGCGTGGCGGCGCCACACATGAGCGGGGGCGGGGTAGGATTAGGGAGCGGTGCGG
TGTCCCTGGTGCTCTCCTACTGCCTCGACAGACCCTCTCTCTCCCTACTGGTCATATTTCTTTTGATCTTTCCATACAGA
ATTTTTCAATG---------------------------------------------------------------------
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--------------------------CAGATACCCATACGAGGGTTTAGTCAAGTCACGGTGACTCCAAGATGAGCTCGG
AATGTAGGATGTGCCT-TATCCTATCTTAATAAAAGTAAATTTACATTGTCAAAACCTCTTGAAAAAGATGAAGTTGCAT
ATTATTGGAGTATTTTAGTTTCTTGC------TGGTCCAAAGATGCATCCTTGTGCCATGTGGAAAAGGCACAACTTTGG
TGCAC-AAACATGTGTTATTTAGCCACTCATTTTGTGTGTTTTTTT--
>SNPs
S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
--S---------S------------------------------S---SS-------------------------------
-------S---------------------S-----------------------------------------------S--
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---S-----------------------------------------------------------S----------------
-S-------------------------------------------S-----------SS--------------S------
----------S---------S-----------SS-------------------------SSSSSS---------S-----
----------S-------------S----S----------SS---SS---------------------------------
---------------------------S--S-----S-------------------S----S--S-------S-------
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--------------------------S-------------------------------S---------------------
-S------------------------S---------------------------S--S-----S----------------
---S-------S---SSSS----------SS-------S--------------S----S-S----------------S--
---------------------------------------------S--S-------------------------------
--------------------------------------S---------------S-------------------------
----------------------------------------------S-S---S------------------S--------
----------S---------S----------S------------------------------------------------
----------------------------------------------------------------S---SS----------
-------------------------------S------------------------------------------------
-----------------S--------S---S--S-------S--------------------------------------
----S-----------------------------------------------S-------------------------SS
SSS--------------------S--------------------S--------S----------S---------------
---------------------------------------------------------S----------------------
--S----S-----------------S----------------------------------------S-----S---S---
---------------S-------------------S--------------------------------------------
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-------------------------------------------------------------------S------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---S--S----------------------------------SS-----S---S-
--------------SSS---------S--------S-------------------------------SSSSS--S-----
--------------------------SSSSSS-------------------------------------S----S-----
-----S--------S------------------S--SSSS------SS
>forward_977
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-----------------------------------------------------------------------------CTG
CTCCCTCACTCAACCTG---------------------------------------------------------------
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>reverse_3639
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--------------------------------------GCAGTTCGCCCACACAAAAT----------------------
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