Multiple sequence alignment - TraesCS4B01G214700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G214700 chr4B 100.000 2464 0 0 1 2464 454037941 454040404 0.000000e+00 4551
1 TraesCS4B01G214700 chr4B 93.750 80 5 0 2355 2434 352135477 352135556 1.200000e-23 121
2 TraesCS4B01G214700 chr4B 94.805 77 4 0 2352 2428 634413113 634413189 1.200000e-23 121
3 TraesCS4B01G214700 chr4A 95.956 2374 66 16 7 2356 96018850 96016483 0.000000e+00 3825
4 TraesCS4B01G214700 chr4A 91.358 81 6 1 2355 2434 503630588 503630508 2.590000e-20 110
5 TraesCS4B01G214700 chr4D 94.095 2388 100 19 1 2356 368869991 368872369 0.000000e+00 3591
6 TraesCS4B01G214700 chr3A 85.135 148 16 5 34 175 582283366 582283219 1.970000e-31 147
7 TraesCS4B01G214700 chr3A 83.673 147 19 3 34 175 498230085 498229939 1.540000e-27 134
8 TraesCS4B01G214700 chr3D 84.459 148 17 5 34 175 441388818 441388671 9.190000e-30 141
9 TraesCS4B01G214700 chr3D 82.432 148 19 6 34 175 375193909 375193763 3.330000e-24 122
10 TraesCS4B01G214700 chr3D 94.805 77 4 0 2358 2434 610017761 610017685 1.200000e-23 121
11 TraesCS4B01G214700 chr3D 81.457 151 18 8 33 175 170537951 170537803 5.570000e-22 115
12 TraesCS4B01G214700 chr5A 83.108 148 19 2 34 175 329991951 329991804 1.990000e-26 130
13 TraesCS4B01G214700 chr5B 95.062 81 4 0 2354 2434 368502787 368502867 7.150000e-26 128
14 TraesCS4B01G214700 chr5B 92.771 83 5 1 2354 2435 327750200 327750282 4.300000e-23 119
15 TraesCS4B01G214700 chr5B 91.566 83 7 0 2352 2434 216649429 216649347 5.570000e-22 115
16 TraesCS4B01G214700 chr2B 93.976 83 5 0 2352 2434 211527826 211527908 2.570000e-25 126
17 TraesCS4B01G214700 chr3B 82.313 147 21 3 34 175 489352875 489352729 3.330000e-24 122
18 TraesCS4B01G214700 chr1B 91.358 81 7 0 2354 2434 41090989 41091069 7.200000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G214700 chr4B 454037941 454040404 2463 False 4551 4551 100.000 1 2464 1 chr4B.!!$F2 2463
1 TraesCS4B01G214700 chr4A 96016483 96018850 2367 True 3825 3825 95.956 7 2356 1 chr4A.!!$R1 2349
2 TraesCS4B01G214700 chr4D 368869991 368872369 2378 False 3591 3591 94.095 1 2356 1 chr4D.!!$F1 2355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 280 0.324275 TTGGCTCCAATTGGGCTACC 60.324 55.0 26.82 21.14 36.21 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 1778 1.511887 CATTAGCACGCGTGTTGCC 60.512 57.895 36.8 22.0 42.08 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 100 5.471556 TGGACTACAAACGGATAGAAACA 57.528 39.130 0.00 0.00 0.00 2.83
126 128 6.148150 TGAACAAACACACTAAAACGTCTCTT 59.852 34.615 0.00 0.00 0.00 2.85
197 207 3.113260 ACTCCGTTTGGAACAGAAGAG 57.887 47.619 0.00 0.00 45.87 2.85
218 228 5.888161 AGAGTTTTTCTTTCCTGACATGTGT 59.112 36.000 1.15 0.00 29.61 3.72
221 231 7.707104 AGTTTTTCTTTCCTGACATGTGTAAG 58.293 34.615 1.15 0.00 0.00 2.34
239 249 5.705441 GTGTAAGTGTCATTCAAAGATCCCA 59.295 40.000 0.00 0.00 0.00 4.37
268 278 2.109774 CATTTGGCTCCAATTGGGCTA 58.890 47.619 26.82 21.95 35.13 3.93
270 280 0.324275 TTGGCTCCAATTGGGCTACC 60.324 55.000 26.82 21.14 36.21 3.18
316 326 3.848272 ATAAACTGCAACATCCAACCG 57.152 42.857 0.00 0.00 0.00 4.44
356 366 1.581934 TCAACGGTCTGCAGAAACTG 58.418 50.000 20.19 15.23 34.12 3.16
438 452 4.316205 TGTGACTAGGGTTATATGCACG 57.684 45.455 0.00 0.00 0.00 5.34
441 455 3.319972 TGACTAGGGTTATATGCACGGAC 59.680 47.826 0.00 0.00 0.00 4.79
454 468 1.300697 ACGGACGGAACTGTTCAGC 60.301 57.895 21.01 12.90 0.00 4.26
466 481 2.048222 TTCAGCCTGTTCCTCGCG 60.048 61.111 0.00 0.00 0.00 5.87
683 698 9.369904 GTACATTATGTGCAATTTTCCATTTCT 57.630 29.630 8.26 0.00 33.03 2.52
1037 1052 1.815196 CTGTTGCTTGGGTGCACAA 59.185 52.632 20.43 4.21 43.20 3.33
1089 1104 3.107601 CTCCTCTGGGTATTCTTCCACA 58.892 50.000 0.00 0.00 0.00 4.17
1233 1248 3.474920 ACCATGGGGAAATCTAGGACTT 58.525 45.455 18.09 0.00 38.05 3.01
1296 1330 5.369404 TGGTATTGCATCCTATGGAGAAAGA 59.631 40.000 0.00 0.00 34.05 2.52
1400 1434 0.538057 CTTCAAGAAGCAGCACCCCA 60.538 55.000 0.00 0.00 0.00 4.96
1676 1714 9.893634 TTCCGGAGAAAATCTACATAAATACAA 57.106 29.630 3.34 0.00 0.00 2.41
1740 1778 2.232452 AGAGAGGACTGACATTGTTCCG 59.768 50.000 0.00 0.00 0.00 4.30
1950 1988 3.360867 TCTTGTTTGCCAGTTCAAAGGA 58.639 40.909 0.00 0.00 36.71 3.36
2160 2198 0.111639 TTACAAGGTTGGGGTGCCTC 59.888 55.000 0.00 0.00 33.24 4.70
2270 2308 2.445682 TCTCTCAGGTCTCCCTAAGC 57.554 55.000 0.00 0.00 39.89 3.09
2356 2394 6.206498 TGAGCAGTGATAACATACGACATAC 58.794 40.000 0.00 0.00 0.00 2.39
2357 2395 6.039382 TGAGCAGTGATAACATACGACATACT 59.961 38.462 0.00 0.00 0.00 2.12
2358 2396 6.439599 AGCAGTGATAACATACGACATACTC 58.560 40.000 0.00 0.00 0.00 2.59
2359 2397 5.629849 GCAGTGATAACATACGACATACTCC 59.370 44.000 0.00 0.00 0.00 3.85
2360 2398 6.150318 CAGTGATAACATACGACATACTCCC 58.850 44.000 0.00 0.00 0.00 4.30
2361 2399 6.016192 CAGTGATAACATACGACATACTCCCT 60.016 42.308 0.00 0.00 0.00 4.20
2362 2400 6.207025 AGTGATAACATACGACATACTCCCTC 59.793 42.308 0.00 0.00 0.00 4.30
2363 2401 5.475909 TGATAACATACGACATACTCCCTCC 59.524 44.000 0.00 0.00 0.00 4.30
2364 2402 2.228059 ACATACGACATACTCCCTCCG 58.772 52.381 0.00 0.00 0.00 4.63
2365 2403 2.228059 CATACGACATACTCCCTCCGT 58.772 52.381 0.00 0.00 0.00 4.69
2366 2404 2.425143 TACGACATACTCCCTCCGTT 57.575 50.000 0.00 0.00 0.00 4.44
2367 2405 1.101331 ACGACATACTCCCTCCGTTC 58.899 55.000 0.00 0.00 0.00 3.95
2368 2406 0.384669 CGACATACTCCCTCCGTTCC 59.615 60.000 0.00 0.00 0.00 3.62
2369 2407 1.481871 GACATACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
2370 2408 1.829222 GACATACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
2371 2409 2.235402 GACATACTCCCTCCGTTCCAAA 59.765 50.000 0.00 0.00 0.00 3.28
2372 2410 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2373 2411 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2374 2412 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2375 2413 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2376 2414 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2377 2415 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2378 2416 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2379 2417 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2380 2418 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2381 2419 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2382 2420 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2383 2421 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2384 2422 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2385 2423 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2386 2424 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2387 2425 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2388 2426 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2389 2427 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2390 2428 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2391 2429 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2392 2430 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2393 2431 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
2395 2433 8.779354 AAATAGATGACTCAACTTTGTACTCC 57.221 34.615 0.00 0.00 0.00 3.85
2396 2434 5.153950 AGATGACTCAACTTTGTACTCCC 57.846 43.478 0.00 0.00 0.00 4.30
2397 2435 4.841246 AGATGACTCAACTTTGTACTCCCT 59.159 41.667 0.00 0.00 0.00 4.20
2398 2436 4.602340 TGACTCAACTTTGTACTCCCTC 57.398 45.455 0.00 0.00 0.00 4.30
2399 2437 3.323979 TGACTCAACTTTGTACTCCCTCC 59.676 47.826 0.00 0.00 0.00 4.30
2400 2438 2.299297 ACTCAACTTTGTACTCCCTCCG 59.701 50.000 0.00 0.00 0.00 4.63
2401 2439 2.299297 CTCAACTTTGTACTCCCTCCGT 59.701 50.000 0.00 0.00 0.00 4.69
2402 2440 2.298163 TCAACTTTGTACTCCCTCCGTC 59.702 50.000 0.00 0.00 0.00 4.79
2403 2441 1.264295 ACTTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
2404 2442 0.535797 CTTTGTACTCCCTCCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
2405 2443 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
2406 2444 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2407 2445 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2408 2446 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2409 2447 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2410 2448 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2411 2449 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2412 2450 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2413 2451 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2414 2452 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2415 2453 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2416 2454 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2417 2455 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2418 2456 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2419 2457 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2420 2458 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2421 2459 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2422 2460 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2423 2461 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2424 2462 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2425 2463 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2426 2464 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2427 2465 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2428 2466 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.205893 GACGAAGGGAGTGCTGAGAAT 59.794 52.381 0.00 0.00 0.00 2.40
32 33 6.338146 TCTTATATTTGTGACGAAGGGAGTG 58.662 40.000 0.00 0.00 0.00 3.51
69 71 9.976511 TTCTATCCGTTTGTAGTCCATATTAAG 57.023 33.333 0.00 0.00 0.00 1.85
98 100 6.004408 ACGTTTTAGTGTGTTTGTTCACTT 57.996 33.333 3.25 0.00 43.39 3.16
148 155 7.067008 CCCTCCGTTCACAAATATAAGATGTTT 59.933 37.037 0.00 0.00 0.00 2.83
197 207 7.432252 CACTTACACATGTCAGGAAAGAAAAAC 59.568 37.037 0.00 0.00 0.00 2.43
218 228 6.720309 TCATGGGATCTTTGAATGACACTTA 58.280 36.000 0.00 0.00 0.00 2.24
221 231 5.188434 TCTCATGGGATCTTTGAATGACAC 58.812 41.667 0.00 0.00 0.00 3.67
239 249 5.750352 ATTGGAGCCAAATGTTTTCTCAT 57.250 34.783 5.98 0.00 39.55 2.90
268 278 2.159101 TACTGGACCGCACCTAGGGT 62.159 60.000 14.81 0.07 39.83 4.34
270 280 0.899720 TTTACTGGACCGCACCTAGG 59.100 55.000 7.41 7.41 0.00 3.02
312 322 5.956642 ACATTGTACTTTTTGTTCACGGTT 58.043 33.333 0.00 0.00 0.00 4.44
316 326 8.678510 CGTTGATACATTGTACTTTTTGTTCAC 58.321 33.333 0.00 0.00 0.00 3.18
356 366 8.268850 AGTGAACATGTGTAGAAATTATGGTC 57.731 34.615 0.00 0.00 36.32 4.02
438 452 0.951040 CAGGCTGAACAGTTCCGTCC 60.951 60.000 9.42 9.74 0.00 4.79
441 455 0.868406 GAACAGGCTGAACAGTTCCG 59.132 55.000 23.66 5.59 35.52 4.30
454 468 0.738975 TAGATGTCGCGAGGAACAGG 59.261 55.000 10.24 0.00 0.00 4.00
466 481 5.341872 AGGCAGCATATGAGATAGATGTC 57.658 43.478 6.97 0.00 30.65 3.06
683 698 3.128349 GAGTGCTGACGAGGTTTTTGTA 58.872 45.455 0.00 0.00 0.00 2.41
1037 1052 2.034558 CGTTTCATCAAGGTGGCACTTT 59.965 45.455 18.45 13.99 0.00 2.66
1089 1104 6.097412 GGCTTTTGGAAATTGTAGATCCAGAT 59.903 38.462 0.00 0.00 43.69 2.90
1233 1248 3.858812 GCATCATAAATCTGCGCACAAAA 59.141 39.130 5.66 0.00 0.00 2.44
1296 1330 3.244770 TGGGTAATTCACTTTCGCCTCTT 60.245 43.478 0.00 0.00 0.00 2.85
1400 1434 9.686683 ACCAAGAAAGCAGACATATATAGTTTT 57.313 29.630 0.00 0.00 0.00 2.43
1676 1714 7.568199 ACTTGCTTTTACAGTGTGAGTTATT 57.432 32.000 5.88 0.00 0.00 1.40
1740 1778 1.511887 CATTAGCACGCGTGTTGCC 60.512 57.895 36.80 22.00 42.08 4.52
1950 1988 7.345653 TGATCAGGACCAAAGAGTAGATGTATT 59.654 37.037 0.00 0.00 0.00 1.89
2160 2198 7.384387 ACAGAGATCGATGTCATATCAAATGTG 59.616 37.037 23.01 11.34 0.00 3.21
2270 2308 4.566004 TGAATAACAGTGGTTCTCCTTCG 58.434 43.478 0.00 0.00 38.45 3.79
2356 2394 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2357 2395 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2358 2396 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2359 2397 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2360 2398 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2361 2399 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2362 2400 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2363 2401 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2364 2402 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2365 2403 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2366 2404 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
2367 2405 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
2369 2407 9.220767 GGAGTACAAAGTTGAGTCATCTATTTT 57.779 33.333 4.14 0.00 0.00 1.82
2370 2408 7.824779 GGGAGTACAAAGTTGAGTCATCTATTT 59.175 37.037 4.14 0.00 0.00 1.40
2371 2409 7.181125 AGGGAGTACAAAGTTGAGTCATCTATT 59.819 37.037 4.14 0.00 0.00 1.73
2372 2410 6.670027 AGGGAGTACAAAGTTGAGTCATCTAT 59.330 38.462 4.14 0.00 0.00 1.98
2373 2411 6.017192 AGGGAGTACAAAGTTGAGTCATCTA 58.983 40.000 4.14 0.00 0.00 1.98
2374 2412 4.841246 AGGGAGTACAAAGTTGAGTCATCT 59.159 41.667 0.00 0.00 0.00 2.90
2375 2413 5.153950 AGGGAGTACAAAGTTGAGTCATC 57.846 43.478 0.00 0.00 0.00 2.92
2376 2414 4.020128 GGAGGGAGTACAAAGTTGAGTCAT 60.020 45.833 0.00 0.00 0.00 3.06
2377 2415 3.323979 GGAGGGAGTACAAAGTTGAGTCA 59.676 47.826 0.00 0.00 0.00 3.41
2378 2416 3.614390 CGGAGGGAGTACAAAGTTGAGTC 60.614 52.174 0.00 0.00 0.00 3.36
2379 2417 2.299297 CGGAGGGAGTACAAAGTTGAGT 59.701 50.000 0.00 0.00 0.00 3.41
2380 2418 2.299297 ACGGAGGGAGTACAAAGTTGAG 59.701 50.000 0.00 0.00 0.00 3.02
2381 2419 2.298163 GACGGAGGGAGTACAAAGTTGA 59.702 50.000 0.00 0.00 0.00 3.18
2382 2420 2.612221 GGACGGAGGGAGTACAAAGTTG 60.612 54.545 0.00 0.00 0.00 3.16
2383 2421 1.622312 GGACGGAGGGAGTACAAAGTT 59.378 52.381 0.00 0.00 0.00 2.66
2384 2422 1.264295 GGACGGAGGGAGTACAAAGT 58.736 55.000 0.00 0.00 0.00 2.66
2385 2423 0.535797 GGGACGGAGGGAGTACAAAG 59.464 60.000 0.00 0.00 0.00 2.77
2386 2424 0.178926 TGGGACGGAGGGAGTACAAA 60.179 55.000 0.00 0.00 0.00 2.83
2387 2425 0.178926 TTGGGACGGAGGGAGTACAA 60.179 55.000 0.00 0.00 0.00 2.41
2388 2426 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
2389 2427 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
2390 2428 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2391 2429 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2392 2430 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2393 2431 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2394 2432 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2395 2433 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2396 2434 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2397 2435 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2398 2436 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2399 2437 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2400 2438 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2401 2439 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2402 2440 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.