>input_sequence_79459
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------------------------------------------------------ATGGATGGCCTCTGCTGTGCTGTTGC
TTGGGTGCACAAAAGTGCCACCTTGATGAAACGAAGTACTTGCTCCTCTGGGTATTCTTCCACATCTGGATCTACAATTT
CCAAAAGCCTCCCTTCTTCTCGCAGCTTCCATGTCTGCAGTTCAGTCCAAGTCAATTATGCAAAAGAAAAAATAGGATCA
GCATCACCAATATGTGATGCGAGTCTACCATGGGGAAATCTAGGACTTTTTGTGCGCAGATTTATGATGCTGCAGCTA--
---------TACAAGCATGGTATT-GCATCCTAT-------GGAGAAAGAAGAGGCGAAAGTGAATTACCCATTCCACAA
GGACATGCATATCTTCCCCCCAAGTCGATTTGCTGCTGCTTTCACCACTTATAACTTCAAGAAGCAGCACCCCAAAACTA
TATATGTCTGCTTTCTTGGTTAACTGTCCCAATAATGCATACTCTGGAGCCAAGTAA-----------------------
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>chr4B_1_TraesCS4B01G214700
TGGTATTGTCATATTTATAATTTCATTCTCAGCACTCCCTTCG-TCACAAATATAAGATGTTTTGAATATCTTAATATGG
ACTACAAACGGATAGAAACAAGTGAACAAACACACTAAAACGTCTCTTTATAC-----ATTCAGAAAAAAGATAAAA-CA
TCTTATATTTGTGAACGGAGG--GTAACTCCGTTTGGAACAGAAGAGTTTTTCTTTCCTGACATGTGTAAGTGTCATTCA
AAGATCCCATGAGAAAACATTTGGCTCCAATTGGGCTACCCTAGGTGCGGTCCAGTAAAAAAATTATAAACTGCAACATC
CAACCGTGAACAAAAAGTACAATGTATCAACGGTCTGCAGAAACTGACCATAATTTCTACACAT--GTTCA--CTCTACA
TGAAGAAAAGTAAACTTATGAAATTAAAATTGTGACTAGGGTTATATGCACGGACGGAACTGTTCAGCC-TGTTCCTCGC
GACATCTATCTCATATGCTGCCTTCTGTTGGGAAGCTCCAACGACATAATGCTTGTGCAACGCGTCTCTACACCAAGCAC
TAAAGAATAACATGTGTTAAACTTTGAAGAAGTGAAGTGCACATTCTGTACAGCAGCAATTCACAGCTACTCCCCTCAGC
ATCCTGTCTATCTCCTGAATCAGGGCTTCAAGTACATTATGTGCAATTTTCCATTTCTACAAAAACCTCGTCAGCACTCG
ACGCATCAAAACCTCATGGCACTCTGATGGAGGTGGCAAACAAGTTTGCAAGTTGGTCCACCACATCACCTAGGTGAAAC
CTCCGTTGTGCTAAAATTACAGCTGTTCATGTCTCTGGTCTGTGTGGTGCAGGAGCCAGCCACGTTGGCTCTGGTGCTCT
GACTCGAGGACGTGTCCAGAGCCAAATCCCCCAAACTGCCCATTTTACGACGGGGTTCTTTCAGCACACCCGGTGGGACG
GCGTTTTGAAGATCGATTTCTGTTTCATTAGCTAGCATATGGACCACCTGCTTCATGGATGGCCTCTGCTGTGCTGTTGC
TTGGGTGCACAAAAGTGCCACCTTGATGAAACGAAGTACTTGCTCCTCTGGGTATTCTTCCACATCTGGATCTACAATTT
CCAAAAGCCTCCCTTCTTCTCGCAGCTTCCATGTCTGCAGTTCAGTCCAAGTCAATTATGCAAAAGAAAAAATAGGATCA
GCATCACCAATATGTGATGCGAGTCTACCATGGGGAAATCTAGGACTTTTTGTGCGCAGATTTATGATGCTGCAGCTA--
---------TACAAGCATGGTATT-GCATCCTAT-------GGAGAAAGAAGAGGCGAAAGTGAATTACCCATTCCACAA
GGACATGCATATCTTCCCCCCAAGTCGATTTGCTGCTGCTTTCACCACTTATAACTTCAAGAAGCAGCACCCCAAAACTA
TATATGTCTGCTTTCTTGGTTAACTGTCCCAATAATGCATACTCTGGAGCCAAGTAACCCCTGCAGGAGAGATCATATCC
GCAAATGTCAATAGAAGTTTGTCGTTACGGAAAAAGCAAAATACAACTAATAGTCTCGACAGCATCACAA--GTC--AAT
TGGTTCAACTGGGAGAAAAGTAACTGAAGGCAGCTGATTGAAATATTTTTGCTTTCATCATTAAAAGTAAGTACTGCACG
ATATTTGTTCCGGAGAAAATCTACATAAATACAAATAACTCACACTGTAAAAGCAAGTAAATACACCAAAAGATATAGAG
AGGACTGACATTGTTCCGGCAACACGCGTGCTAATGTGAGTGATGGCATCAGGGAAAAGCTTGGCCAGTCCAAAATCTCC
AATTTTAGGAACCAGCGTCTTATCAAGTAAGATGTTGCTAGCCTTGATATCACGGTGGACTATGCGTGGTTGTGCTTCCT
CGTGAAGAAATGCAAGACCAGAAGCAGTTCCAGTACAAATGGCAGCTCTTGTTTGCCAGTTCAAAGGAATACATCTACTC
TTTGGTCCTGATCACAAGGTAATGCACAGGATTATGAAAGTTAATACACAGGTCAGACTTTGTGCAAGTAAAATTCCAGT
CTTAAACTTACCAAGCAAAGCATTTGACAAACTGTTGTTCTCCGCATATTCATACACCAATAATCTGTTATTCCCTTCGA
CACAGCAACCAATGAGCTTTACAAGGTTGGGGTGCCTCACATTTGATATGACATCGATCTCTGTCAAGAACTCATTAGTT
CCTTGCTTTGATTCAGCTGAAAGCCTTTTAATTGCAACTTGGGTGCCATCTCTCAGGTCTCCCTAAGCGAAGGAGAACCA
CTGTTATTCATTCTTCCAAAAGAGAACATTGGCAGTAAAGTATGACTAATGAGCAGTGATAACATACGACATACTCCCTC
CGTTCCAAAATAGATGACTCAACTTTGTACTCCCTCCGTCCCAAAATTCTTGTCTTAGATTTGTCTAGATATTAGATACA
TCCGTATAATATCTAGACTAG
>chr4D_1
TGGTATTGTCATATTTATAATTTCGTT-TCAGTACCCTCTTCGTTCACAAATATAAGATGTTTTGAATATTTTAATATGA
ACTACAAAGGGATTGAAATGAGTGAACAAAAACACTAAAAC--CTCTATATACATCTGATTCATAAAAATTTTGGAA-AA
TCTTATATTTGTGAAAGGAGGGAGTAACTCCGTTTGGAACAGAAG--TTTTTCTTTCCTGACAGGTGGAACTGTCATTCA
AAAATCAAGTGAGAAAACATTTGGCTCCAAATGGGCTCCTCTAGGTGCGGTCCAGTAAAAAAATTATATACTGTAACATC
CCACCATGAACAAAAAGTACAATGTATAAACGGTCTGCAGAAACTTATCATAATTTCTACACATATGTTCACTCTCTACA
TGAAGAAAAGTAAACTTATAACATTAAAATTGTGACTAGGGTTATGTGCACAGAGGGAGCTGTTCAG-C-TGTTCCTCGC
CACATCTATCTCATATGCTGCCTTCTGTTGGGAAGCTCCAACGACATAATGCTTGTACGATGCGTCTCTACACCAAGCAC
TAAAGAATAACATGTGTTAAACTTTGAA---GTGAAGTGCACATTCTGTACAGCAGCAATTCACAGCTACTACCCTCAGC
ATCCTGT--ATCTCCTGAATCAGGGCTTCAAGTACATTATGTGCAATTTTCCATTTCAACATAAACCTTGTCAGCACTCG
ACGCATCAAAACCTCATGGCACTCTGATGAAGGTGGCAAACAAGTTTGCAAGTTGGTCCACCACATCACCTAGGTGAAAC
CTCCGTTGTGCTAAAATTACAGCTGTTCATGTCTCTAGTCTGTGTGGTGCAGGACCCAGCCGCGTTGACTCTGGTGCTCT
GACTCGAGGACGTGTCCAGAGCCAAATCCCCCAAACTGCCCATTTTACGACGGGGTTCTTTCAGCACACCCGGTGGGACG
GCGTTTTGAAGATCAATTTCTGTTTCATTAGCTAGCATATGGACCACCTGCTTCATGGATGGCCTCTGCTGTGCTGTTGC
TTGGGTGCACAGAAGTGCCACCTTGATGAAACGAAGTACTTGCTCCTCTGGGTATTCTTCCACGTCTGGATCTACAATTT
CCAAAAGCCTCCCTTCTTCTCGCAGCTTCCATGTCTGCAGTTCAGTCCAAGTCAATTATGCAAAAGAAAAAATAGGATCA
CCATCACCAATATGTGCTGCGAGTCTACCATGGGGAAATCTAGGACTCTTTGTGCCCAGAATTATGATGCTGCAGCTATC
AAGAGTTCATACAAGCATGGTATT-GTATGGAGAAAGGAGAGGAGGAAGGAGAGGCGAAAGTGAATTACCCATTCCACAA
GGACATGCATATCTTCCCCCCAAGTCGATTTGCTGCTGCTTTCACCACTTATAACTTCAAGAAGCAGCACCCCGAAACTA
TATATGTCTGCTTTCTTGGTTAACTGTCCCAATAATGCATACTCTGGAGCCAAGTAACCCCTGCAGGAGAGATCATATCC
GCAAAGGTCAATAGAAGTTTGTTGTTATGGAAAAAGCAAAATACAACTAATAGTCTTGACAGCATCACAACAGTCAAAAT
TGGTTCAACTGGGAGAAAAGTAACTGAAGGCAGCTGATTGAAATATCTTTGCTTTCATCGTTAATAGTAAGTACAGCATG
ATATTTGTTCCGGAGAAAATCTACATAAATACACATAACTCACACTGTAAAAGCAAATAAGTAAACCAAAAGATTTAGAG
AGGACTGACATTGTTCCCGCAACGCGCGTGCTAATGTGAGTGATGGCATCAGGGAAAAGCTTGGCCAGTCCAAAATCTCC
AATTTTAGGAACCAGTGTCTTATCAAGTAAGATGTTGCTAGCCTTGATATCACGGTGGACTATGCGTGGTTGTGCTTCCT
CGTGAAGAAATGCAAGACCAGAAGCAGTTCCAGTACAAATGGCAGCTCTTGTTTGCCAGTTCAAAGGGATACATCTACTC
TTTGGTCCTGATCACAAGGTAATGCACAGGATTATGAAAGTTAATATACAGGTCAGACTTTGTGCAAGTAAAATTCCAGT
CTTAAACTTACCAAGCAAAGCATTTGACAAACTGTTGTTCTCCGCATATTCATACACCAATAATCTGTTATTCCCTTCGA
CACAGCAACCAATGAGCCTTACAAGGTTGGGGTGCCTGACATTTGATATGACATCGATTTCTGTCAAGAACTCATTAGTT
CCTTGCTTTGATTCAGCTGAAAGCCTTTTAATTGCAACTTGGGTGCCATCTTTCAGGTCTCCCTAAGTGAAGGAGAACCA
CCGTTATTCATTCTTCCAAAAGAGAACATTGGTAGTAAAGTATGACTAATGAGCAGTGATAACATACGACATA-------
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>chr4A_7
------TGTCATATTTATAATTTCGTTCTCAGTACTCCCTTCG-TCACAAATATAAGATGTTTTGAATATTTTAATATAG
ACTACAAACGGACAGAAACGGGTGAACAAACACACTAAAACGTCTCTATATGCATCTAATTCAGAAAAAAGATAGAAGCA
TCTTATATTTGTGAACGGAGGGAGTAACTCCGTTTGGAACAGAAGATTTTTTCTTTCCTGGCATGTG-AACTGTCATTCA
AAGATCCCGTGAGAAAACATTTAGCTCCAATTGGGCTCCTCTAGGTGCGGTCCACTAAAGAAATTATAAACTGCAACATC
CCACCATGAACAAAAAGTACAATGTATCACCGGTCTGTAGAAACTAACCATAATTTCTACACATATGTTCA--CTCTACA
TGAAGAAAAGTAAACTTATGACATTAAA-TTGTGACTAGGGTTATATGCACCGAGGGAACTGTTCAG-CCTGTTCCTCGC
CACATCTCTCTCATATGCTGCCTTCTGTTGAGAAGCTCCAACGACATAATGCTCGTGCAACGCGTCTCTACACCAAGCAC
TAAAGAATAACATGTGTTAAACTTTGAAG---TGAAGTGTGCATTCTGTACAGCAGCAACTCACAGCTACTCCCCTCAGC
ATCCTGTCTATCTCCTGAATCAAGGCTTCAAGTACATTATGTGCAATTTTCCATTTCAACAAAAACCTCGTCAGCACTCG
ACGCATCAAAACCTCATGGCACTCTGATGGAGGTGGCAAACAAGTTTGCAAATTGGTCCACCACATCACCTAGGTAAAAC
CTCCGTTGTGCTAAAATTACAGCTGTTCATGTCTCTGGTCTGTGTGGTGCAGGAGCCAGCCACGTTGGCTCTGGTGCTCT
GACTCGAGGACGTGTCCAGAGCCAAATCCCCCAAACTACCCATTTTACGACGGGGTTCTTTCAGCACACCCGGTGGGACG
GCGTTTTGAAGATCGATTTCTGTTTCATTAGCTAGCATATGGACCACCTGCTTCATGGATGGCCTCTGCTGTGCTGTTGC
TTGGGTACACAGAAGTGCCACCTTGATGAAACGAAGTACTTGCTCCTCTGGGTATTCTTCCACGTCTGGATCTACAATTT
CCAAAAGTCTCTCTTCTTCTCGCAGCTTCCATGTCTGCAGTTCAGTCCAAGTCAATTATGCAAAAGAAAAAATACGATCA
CCATCACCAATATGTGATGCAAGTCTACCATGGGGAAATCTAGGACTCTCTGTGCGCAGATTTATGATGCTGCAGCTATC
AAGAGTTCATACAAGCATGGTATTTGCATCCTAT-------GGAGAAAGGAGAGGCAAAGGTGAATTACCCATTCCACAA
GGACATGCATATCTTCCCCCCAAGTCGATTTGCTGCTGCTTTCACCACTTATAACTTCAAGAAGCAGCACCCCGAAACTA
TATATGTCTGCTTTCTTGGTTAACTGTCCCAATAGTGCATACTCTGGAGCCAAGTAACCCCTGCAGGAGAGATCATATCC
GTAAATGTCAATAGAAGTTTGTCGTTACGGAAAAAGCAAAATACAACTAATAGTCTCGACAGCATCACAACAGTC--AAT
TGGTTCAACTGGGAGAAAAGTAACTGAAGGCAGCTGATTGAAATATTTTTCCTTTCATCG-TAAAAGTAAGTACTGCACG
ATATCTGTTCCGGAGAAAATCTACATAAATACACATAACTCGCACTGTAAAAGCAAGTAAATACACCAAAAGATATAGAG
AGGACTGACATGGTTCCCGCAACACGCGTGCTAATGTGAGTGATGGCATCAGGGAAAAGCTTGGCCAGTCCAAAATCTCC
AATTTTAGGAGCCAGCGTCTTATCAAGTAAGATGTTGCTAGCCTTGATATCACGGTGGACTATGCGTGGTTGTGCTTCCT
CGTGAAGAAATGCAAGACCAGAAGCAGTTCCAGTACAAATGGCAGCTCTTGTTTGCCAGTTCAAAGGGATACATCTACTC
TTTGGTCCTGATCACAAGGTAATGCACAGGATTATGAAAGTTAATACACAGGTCAGACTTTGTGCAAGTAAAATTCCAGT
CTTAAACTTACCAAGCAAAGCATTTGACAAACTGTTGTTCTCCGCATATTCATACACCAATAATCTGTTATTCCCTTCGA
CACAGCAACCAATGAGCTTTACAAGGTTGGGGTGCCTGACATTTGATATGACATCGATCTCTGTCAAGAACTCATTAGTT
CCTTGCTTTGATTCAGCTGAAAGCCTTTTAATTGCAACTTGGGTGCCATCTCTCAGGTCTCCCTAAGTGAAGGAGAACCA
CTGTTATTCATTCTTCCAAAAGAGAACATTGGCAGTAAAGTATGACTAATGAGCAGTGATAACATATGACATA-------
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>SNPs
------------------------S-------S-------------------------------------S---------
-------------------S---------------------------S--------------------------S-----
----------------------------------------------S--------------------S--S---------
--------S----------------------------S-S----------------------------------------
-S---S---------------------------------------S----------------------------------
---------------------S-----------------------------S--S------------S------------
S-------------------------------------------------------------------------------
-----------------------------SS-------------------------------------------------
---------------------------------------------------------S----------------------
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-----------S---------------------------------------------------S----------------
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S----------------------------------------------S--------------------------------
-------------------------------------------------S------------------------------
-------------------------------------------------------------------------S------
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-----------------------------------------------------------S--------------------
---------------------------------S----------------------------------------------
-----------------S--------------------------------------------------------------
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-------------------------------------S------------------------------------------
-------------------------------------------------------------------S------------
-------------------------------------------------------------------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_280
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--------------------TTGGCTCCAATTGGGCTACC----------------------------------------
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>reverse_1778
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-----------------GGCAACACGCGTGCTAATG--------------------------------------------
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