Multiple sequence alignment - TraesCS4B01G210500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G210500 chr4B 100.000 2705 0 0 1 2705 449126925 449129629 0.000000e+00 4996.0
1 TraesCS4B01G210500 chr4B 89.809 471 39 9 1 469 139382889 139382426 1.790000e-166 595.0
2 TraesCS4B01G210500 chr4A 93.608 970 36 11 1759 2705 101746963 101745997 0.000000e+00 1424.0
3 TraesCS4B01G210500 chr4A 92.416 356 22 4 477 832 101747491 101747141 1.120000e-138 503.0
4 TraesCS4B01G210500 chr4D 92.778 997 37 13 1738 2705 363680341 363681331 0.000000e+00 1410.0
5 TraesCS4B01G210500 chr4D 88.933 506 40 13 477 973 363679855 363680353 6.400000e-171 610.0
6 TraesCS4B01G210500 chr4D 96.875 32 1 0 798 829 450152453 450152484 1.000000e-03 54.7
7 TraesCS4B01G210500 chr1A 95.020 743 36 1 995 1736 353921495 353920753 0.000000e+00 1166.0
8 TraesCS4B01G210500 chr1A 94.091 660 39 0 992 1651 582567648 582568307 0.000000e+00 1003.0
9 TraesCS4B01G210500 chr1A 96.667 90 2 1 1648 1736 582573131 582573220 6.030000e-32 148.0
10 TraesCS4B01G210500 chr3B 91.053 760 49 7 983 1739 805608362 805609105 0.000000e+00 1009.0
11 TraesCS4B01G210500 chrUn 93.019 616 42 1 992 1606 13986648 13986033 0.000000e+00 898.0
12 TraesCS4B01G210500 chrUn 88.235 476 45 8 1 465 51926042 51926517 2.350000e-155 558.0
13 TraesCS4B01G210500 chrUn 93.243 74 5 0 1602 1675 13959789 13959716 2.850000e-20 110.0
14 TraesCS4B01G210500 chr2B 89.792 480 42 7 1 473 801047421 801047900 2.300000e-170 608.0
15 TraesCS4B01G210500 chr2B 88.462 468 46 8 1 466 109323680 109323219 2.350000e-155 558.0
16 TraesCS4B01G210500 chr7B 89.722 467 42 6 1 465 14111013 14111475 2.320000e-165 592.0
17 TraesCS4B01G210500 chr7B 89.474 475 41 9 1 466 640470215 640470689 2.320000e-165 592.0
18 TraesCS4B01G210500 chr7B 87.891 479 46 10 1 470 666579023 666579498 1.090000e-153 553.0
19 TraesCS4B01G210500 chr6B 89.263 475 42 9 1 466 713472324 713472798 1.080000e-163 586.0
20 TraesCS4B01G210500 chr6B 87.891 479 46 10 1 467 716636951 716637429 1.090000e-153 553.0
21 TraesCS4B01G210500 chr2D 94.034 352 20 1 1387 1738 28762280 28761930 1.430000e-147 532.0
22 TraesCS4B01G210500 chr7A 93.846 65 4 0 1672 1736 649420416 649420352 6.160000e-17 99.0
23 TraesCS4B01G210500 chr1B 75.287 174 38 4 1567 1738 488013362 488013192 8.030000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G210500 chr4B 449126925 449129629 2704 False 4996.0 4996 100.0000 1 2705 1 chr4B.!!$F1 2704
1 TraesCS4B01G210500 chr4A 101745997 101747491 1494 True 963.5 1424 93.0120 477 2705 2 chr4A.!!$R1 2228
2 TraesCS4B01G210500 chr4D 363679855 363681331 1476 False 1010.0 1410 90.8555 477 2705 2 chr4D.!!$F2 2228
3 TraesCS4B01G210500 chr1A 353920753 353921495 742 True 1166.0 1166 95.0200 995 1736 1 chr1A.!!$R1 741
4 TraesCS4B01G210500 chr1A 582567648 582568307 659 False 1003.0 1003 94.0910 992 1651 1 chr1A.!!$F1 659
5 TraesCS4B01G210500 chr3B 805608362 805609105 743 False 1009.0 1009 91.0530 983 1739 1 chr3B.!!$F1 756
6 TraesCS4B01G210500 chrUn 13986033 13986648 615 True 898.0 898 93.0190 992 1606 1 chrUn.!!$R2 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 320 0.045469 AAGGGATGGCTTCTCCTCCT 59.955 55.0 9.7 1.74 34.5 3.69 F
381 382 0.105964 TTCGTGTTGAGGGGAGTGTG 59.894 55.0 0.0 0.00 0.0 3.82 F
383 384 0.179056 CGTGTTGAGGGGAGTGTGTT 60.179 55.0 0.0 0.00 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1475 0.907704 ACTCAATACGGTGGAGGGCA 60.908 55.000 9.89 0.0 32.98 5.36 R
1450 1515 1.674817 CGACACCGCCTCCAAACTATT 60.675 52.381 0.00 0.0 0.00 1.73 R
2281 2360 1.685180 CCTACCCTGATGGAGTCGTGA 60.685 57.143 0.00 0.0 38.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.319133 AAAGCAGCGTATGGGTGG 57.681 55.556 0.00 0.00 44.32 4.61
18 19 2.046285 AAAGCAGCGTATGGGTGGC 61.046 57.895 0.00 0.00 44.32 5.01
19 20 4.838152 AGCAGCGTATGGGTGGCG 62.838 66.667 0.00 0.00 44.32 5.69
24 25 4.155733 CGTATGGGTGGCGCCTGA 62.156 66.667 29.70 4.80 37.43 3.86
25 26 2.270850 GTATGGGTGGCGCCTGAA 59.729 61.111 29.70 11.19 37.43 3.02
26 27 1.819632 GTATGGGTGGCGCCTGAAG 60.820 63.158 29.70 0.00 37.43 3.02
27 28 1.992834 TATGGGTGGCGCCTGAAGA 60.993 57.895 29.70 2.88 37.43 2.87
28 29 2.252072 TATGGGTGGCGCCTGAAGAC 62.252 60.000 29.70 17.00 37.43 3.01
29 30 4.021925 GGGTGGCGCCTGAAGACT 62.022 66.667 29.70 0.00 37.43 3.24
30 31 2.743928 GGTGGCGCCTGAAGACTG 60.744 66.667 29.70 0.00 0.00 3.51
31 32 2.743928 GTGGCGCCTGAAGACTGG 60.744 66.667 29.70 0.00 38.02 4.00
32 33 4.020617 TGGCGCCTGAAGACTGGG 62.021 66.667 29.70 0.00 35.96 4.45
33 34 3.706373 GGCGCCTGAAGACTGGGA 61.706 66.667 22.15 0.00 35.96 4.37
34 35 2.125350 GCGCCTGAAGACTGGGAG 60.125 66.667 0.00 0.00 35.96 4.30
35 36 2.581354 CGCCTGAAGACTGGGAGG 59.419 66.667 0.00 0.00 35.96 4.30
36 37 1.984570 CGCCTGAAGACTGGGAGGA 60.985 63.158 0.00 0.00 35.96 3.71
37 38 1.333636 CGCCTGAAGACTGGGAGGAT 61.334 60.000 0.00 0.00 35.96 3.24
38 39 0.467804 GCCTGAAGACTGGGAGGATC 59.532 60.000 0.00 0.00 35.96 3.36
39 40 0.749649 CCTGAAGACTGGGAGGATCG 59.250 60.000 0.00 0.00 34.37 3.69
40 41 1.686428 CCTGAAGACTGGGAGGATCGA 60.686 57.143 0.00 0.00 34.37 3.59
41 42 2.103373 CTGAAGACTGGGAGGATCGAA 58.897 52.381 0.00 0.00 34.37 3.71
42 43 2.100584 CTGAAGACTGGGAGGATCGAAG 59.899 54.545 0.00 0.00 34.37 3.79
43 44 1.410882 GAAGACTGGGAGGATCGAAGG 59.589 57.143 0.00 0.00 34.37 3.46
44 45 0.397816 AGACTGGGAGGATCGAAGGG 60.398 60.000 0.00 0.00 34.37 3.95
45 46 0.688087 GACTGGGAGGATCGAAGGGT 60.688 60.000 0.00 0.00 34.37 4.34
46 47 0.635009 ACTGGGAGGATCGAAGGGTA 59.365 55.000 0.00 0.00 34.37 3.69
47 48 1.007963 ACTGGGAGGATCGAAGGGTAA 59.992 52.381 0.00 0.00 34.37 2.85
48 49 1.413077 CTGGGAGGATCGAAGGGTAAC 59.587 57.143 0.00 0.00 34.37 2.50
49 50 1.007963 TGGGAGGATCGAAGGGTAACT 59.992 52.381 0.00 0.00 34.37 2.24
50 51 1.413077 GGGAGGATCGAAGGGTAACTG 59.587 57.143 0.00 0.00 34.37 3.16
51 52 2.385803 GGAGGATCGAAGGGTAACTGA 58.614 52.381 0.00 0.00 34.37 3.41
52 53 2.764572 GGAGGATCGAAGGGTAACTGAA 59.235 50.000 0.00 0.00 34.37 3.02
53 54 3.181474 GGAGGATCGAAGGGTAACTGAAG 60.181 52.174 0.00 0.00 34.37 3.02
54 55 2.168728 AGGATCGAAGGGTAACTGAAGC 59.831 50.000 0.00 0.00 0.00 3.86
55 56 2.552031 GATCGAAGGGTAACTGAAGCC 58.448 52.381 0.00 0.00 37.29 4.35
56 57 0.611714 TCGAAGGGTAACTGAAGCCC 59.388 55.000 0.00 0.00 42.64 5.19
60 61 1.608154 GGGTAACTGAAGCCCTCCC 59.392 63.158 0.00 0.00 39.31 4.30
61 62 0.914902 GGGTAACTGAAGCCCTCCCT 60.915 60.000 0.00 0.00 39.31 4.20
62 63 0.253327 GGTAACTGAAGCCCTCCCTG 59.747 60.000 0.00 0.00 0.00 4.45
63 64 0.393132 GTAACTGAAGCCCTCCCTGC 60.393 60.000 0.00 0.00 0.00 4.85
64 65 0.547712 TAACTGAAGCCCTCCCTGCT 60.548 55.000 0.00 0.00 41.89 4.24
65 66 2.134630 AACTGAAGCCCTCCCTGCTG 62.135 60.000 0.00 0.00 39.48 4.41
66 67 2.530151 TGAAGCCCTCCCTGCTGT 60.530 61.111 0.00 0.00 39.48 4.40
67 68 2.045536 GAAGCCCTCCCTGCTGTG 60.046 66.667 0.00 0.00 39.48 3.66
68 69 2.530151 AAGCCCTCCCTGCTGTGA 60.530 61.111 0.00 0.00 39.48 3.58
69 70 1.919600 GAAGCCCTCCCTGCTGTGAT 61.920 60.000 0.00 0.00 39.48 3.06
70 71 2.124403 GCCCTCCCTGCTGTGATG 60.124 66.667 0.00 0.00 0.00 3.07
71 72 2.593978 CCCTCCCTGCTGTGATGG 59.406 66.667 0.00 0.00 0.00 3.51
72 73 1.997311 CCCTCCCTGCTGTGATGGA 60.997 63.158 0.00 0.00 0.00 3.41
73 74 1.565390 CCCTCCCTGCTGTGATGGAA 61.565 60.000 0.00 0.00 0.00 3.53
74 75 0.329261 CCTCCCTGCTGTGATGGAAA 59.671 55.000 0.00 0.00 0.00 3.13
75 76 1.272092 CCTCCCTGCTGTGATGGAAAA 60.272 52.381 0.00 0.00 0.00 2.29
76 77 2.517959 CTCCCTGCTGTGATGGAAAAA 58.482 47.619 0.00 0.00 0.00 1.94
77 78 3.094572 CTCCCTGCTGTGATGGAAAAAT 58.905 45.455 0.00 0.00 0.00 1.82
78 79 3.091545 TCCCTGCTGTGATGGAAAAATC 58.908 45.455 0.00 0.00 0.00 2.17
79 80 3.094572 CCCTGCTGTGATGGAAAAATCT 58.905 45.455 0.00 0.00 0.00 2.40
80 81 3.512724 CCCTGCTGTGATGGAAAAATCTT 59.487 43.478 0.00 0.00 0.00 2.40
81 82 4.491676 CCTGCTGTGATGGAAAAATCTTG 58.508 43.478 0.00 0.00 0.00 3.02
82 83 4.491676 CTGCTGTGATGGAAAAATCTTGG 58.508 43.478 0.00 0.00 0.00 3.61
83 84 3.256558 GCTGTGATGGAAAAATCTTGGC 58.743 45.455 0.00 0.00 0.00 4.52
84 85 3.056322 GCTGTGATGGAAAAATCTTGGCT 60.056 43.478 0.00 0.00 0.00 4.75
85 86 4.741342 CTGTGATGGAAAAATCTTGGCTC 58.259 43.478 0.00 0.00 0.00 4.70
86 87 3.511146 TGTGATGGAAAAATCTTGGCTCC 59.489 43.478 0.00 0.00 0.00 4.70
87 88 3.766051 GTGATGGAAAAATCTTGGCTCCT 59.234 43.478 0.00 0.00 0.00 3.69
88 89 3.765511 TGATGGAAAAATCTTGGCTCCTG 59.234 43.478 0.00 0.00 0.00 3.86
89 90 1.895131 TGGAAAAATCTTGGCTCCTGC 59.105 47.619 0.00 0.00 38.76 4.85
100 101 2.576298 GCTCCTGCCTTTTCATGCT 58.424 52.632 0.00 0.00 0.00 3.79
101 102 0.172803 GCTCCTGCCTTTTCATGCTG 59.827 55.000 0.00 0.00 0.00 4.41
102 103 0.815734 CTCCTGCCTTTTCATGCTGG 59.184 55.000 0.00 0.00 45.06 4.85
103 104 1.217244 CCTGCCTTTTCATGCTGGC 59.783 57.895 9.93 9.93 45.10 4.85
104 105 1.255667 CCTGCCTTTTCATGCTGGCT 61.256 55.000 15.33 0.00 45.11 4.75
105 106 0.606604 CTGCCTTTTCATGCTGGCTT 59.393 50.000 15.33 0.00 45.11 4.35
106 107 0.604578 TGCCTTTTCATGCTGGCTTC 59.395 50.000 15.33 0.00 45.11 3.86
107 108 0.457337 GCCTTTTCATGCTGGCTTCG 60.457 55.000 9.68 0.00 41.92 3.79
108 109 0.457337 CCTTTTCATGCTGGCTTCGC 60.457 55.000 0.00 0.00 0.00 4.70
109 110 0.524862 CTTTTCATGCTGGCTTCGCT 59.475 50.000 0.00 0.00 0.00 4.93
110 111 0.961019 TTTTCATGCTGGCTTCGCTT 59.039 45.000 0.00 0.00 0.00 4.68
111 112 0.523072 TTTCATGCTGGCTTCGCTTC 59.477 50.000 0.00 0.00 0.00 3.86
112 113 0.606130 TTCATGCTGGCTTCGCTTCA 60.606 50.000 0.00 0.00 0.00 3.02
113 114 0.393402 TCATGCTGGCTTCGCTTCAT 60.393 50.000 0.00 0.00 0.00 2.57
114 115 0.454600 CATGCTGGCTTCGCTTCATT 59.545 50.000 0.00 0.00 0.00 2.57
115 116 1.135199 CATGCTGGCTTCGCTTCATTT 60.135 47.619 0.00 0.00 0.00 2.32
116 117 0.961019 TGCTGGCTTCGCTTCATTTT 59.039 45.000 0.00 0.00 0.00 1.82
117 118 1.336148 TGCTGGCTTCGCTTCATTTTG 60.336 47.619 0.00 0.00 0.00 2.44
118 119 1.343506 CTGGCTTCGCTTCATTTTGC 58.656 50.000 0.00 0.00 0.00 3.68
119 120 0.961019 TGGCTTCGCTTCATTTTGCT 59.039 45.000 0.00 0.00 0.00 3.91
120 121 1.336148 TGGCTTCGCTTCATTTTGCTG 60.336 47.619 0.00 0.00 0.00 4.41
121 122 1.068333 GGCTTCGCTTCATTTTGCTGA 60.068 47.619 0.00 0.00 0.00 4.26
122 123 2.416431 GGCTTCGCTTCATTTTGCTGAT 60.416 45.455 0.00 0.00 0.00 2.90
123 124 2.597305 GCTTCGCTTCATTTTGCTGATG 59.403 45.455 0.00 0.00 0.00 3.07
124 125 3.829948 CTTCGCTTCATTTTGCTGATGT 58.170 40.909 0.00 0.00 0.00 3.06
125 126 3.921119 TCGCTTCATTTTGCTGATGTT 57.079 38.095 0.00 0.00 0.00 2.71
126 127 3.825308 TCGCTTCATTTTGCTGATGTTC 58.175 40.909 0.00 0.00 0.00 3.18
127 128 3.252944 TCGCTTCATTTTGCTGATGTTCA 59.747 39.130 0.00 0.00 0.00 3.18
128 129 3.606777 CGCTTCATTTTGCTGATGTTCAG 59.393 43.478 0.08 0.08 46.90 3.02
142 143 5.724328 TGATGTTCAGACTAAGTGGATGAC 58.276 41.667 0.00 0.00 0.00 3.06
143 144 4.537135 TGTTCAGACTAAGTGGATGACC 57.463 45.455 0.00 0.00 0.00 4.02
144 145 3.260884 TGTTCAGACTAAGTGGATGACCC 59.739 47.826 0.00 0.00 34.81 4.46
145 146 3.474798 TCAGACTAAGTGGATGACCCT 57.525 47.619 0.00 0.00 35.38 4.34
146 147 3.099905 TCAGACTAAGTGGATGACCCTG 58.900 50.000 0.00 0.00 35.38 4.45
147 148 2.834549 CAGACTAAGTGGATGACCCTGT 59.165 50.000 0.00 0.00 35.38 4.00
148 149 4.023980 CAGACTAAGTGGATGACCCTGTA 58.976 47.826 0.00 0.00 35.38 2.74
149 150 4.466370 CAGACTAAGTGGATGACCCTGTAA 59.534 45.833 0.00 0.00 35.38 2.41
150 151 5.129485 CAGACTAAGTGGATGACCCTGTAAT 59.871 44.000 0.00 0.00 35.38 1.89
151 152 6.323996 CAGACTAAGTGGATGACCCTGTAATA 59.676 42.308 0.00 0.00 35.38 0.98
152 153 7.015682 CAGACTAAGTGGATGACCCTGTAATAT 59.984 40.741 0.00 0.00 35.38 1.28
153 154 7.569111 AGACTAAGTGGATGACCCTGTAATATT 59.431 37.037 0.00 0.00 35.38 1.28
154 155 7.509546 ACTAAGTGGATGACCCTGTAATATTG 58.490 38.462 0.00 0.00 35.38 1.90
155 156 5.975988 AGTGGATGACCCTGTAATATTGT 57.024 39.130 0.00 0.00 35.38 2.71
156 157 5.684704 AGTGGATGACCCTGTAATATTGTG 58.315 41.667 0.00 0.00 35.38 3.33
157 158 5.191722 AGTGGATGACCCTGTAATATTGTGT 59.808 40.000 0.00 0.00 35.38 3.72
158 159 5.527582 GTGGATGACCCTGTAATATTGTGTC 59.472 44.000 0.00 0.00 35.38 3.67
159 160 5.428457 TGGATGACCCTGTAATATTGTGTCT 59.572 40.000 0.00 0.00 35.38 3.41
160 161 5.760253 GGATGACCCTGTAATATTGTGTCTG 59.240 44.000 0.00 0.00 0.00 3.51
161 162 4.513442 TGACCCTGTAATATTGTGTCTGC 58.487 43.478 0.00 0.00 0.00 4.26
162 163 4.225042 TGACCCTGTAATATTGTGTCTGCT 59.775 41.667 0.00 0.00 0.00 4.24
163 164 5.423931 TGACCCTGTAATATTGTGTCTGCTA 59.576 40.000 0.00 0.00 0.00 3.49
164 165 6.099701 TGACCCTGTAATATTGTGTCTGCTAT 59.900 38.462 0.00 0.00 0.00 2.97
165 166 7.289084 TGACCCTGTAATATTGTGTCTGCTATA 59.711 37.037 0.00 0.00 0.00 1.31
166 167 8.029782 ACCCTGTAATATTGTGTCTGCTATAA 57.970 34.615 0.00 0.00 0.00 0.98
167 168 8.491134 ACCCTGTAATATTGTGTCTGCTATAAA 58.509 33.333 0.00 0.00 0.00 1.40
168 169 9.337396 CCCTGTAATATTGTGTCTGCTATAAAA 57.663 33.333 0.00 0.00 0.00 1.52
176 177 8.807948 ATTGTGTCTGCTATAAAATGGTAGTT 57.192 30.769 0.00 0.00 0.00 2.24
177 178 8.630054 TTGTGTCTGCTATAAAATGGTAGTTT 57.370 30.769 0.00 0.00 0.00 2.66
178 179 8.263940 TGTGTCTGCTATAAAATGGTAGTTTC 57.736 34.615 0.00 0.00 0.00 2.78
179 180 8.100791 TGTGTCTGCTATAAAATGGTAGTTTCT 58.899 33.333 0.00 0.00 0.00 2.52
180 181 8.604890 GTGTCTGCTATAAAATGGTAGTTTCTC 58.395 37.037 0.00 0.00 0.00 2.87
181 182 8.540388 TGTCTGCTATAAAATGGTAGTTTCTCT 58.460 33.333 0.00 0.00 0.00 3.10
182 183 9.384764 GTCTGCTATAAAATGGTAGTTTCTCTT 57.615 33.333 0.00 0.00 0.00 2.85
183 184 9.959721 TCTGCTATAAAATGGTAGTTTCTCTTT 57.040 29.630 0.00 0.00 0.00 2.52
184 185 9.994432 CTGCTATAAAATGGTAGTTTCTCTTTG 57.006 33.333 0.00 0.00 0.00 2.77
185 186 9.515226 TGCTATAAAATGGTAGTTTCTCTTTGT 57.485 29.630 0.00 0.00 0.00 2.83
189 190 6.819397 AAATGGTAGTTTCTCTTTGTAGCC 57.181 37.500 0.00 0.00 0.00 3.93
190 191 5.763876 ATGGTAGTTTCTCTTTGTAGCCT 57.236 39.130 0.00 0.00 0.00 4.58
191 192 5.148651 TGGTAGTTTCTCTTTGTAGCCTC 57.851 43.478 0.00 0.00 0.00 4.70
192 193 4.838986 TGGTAGTTTCTCTTTGTAGCCTCT 59.161 41.667 0.00 0.00 0.00 3.69
193 194 5.172205 GGTAGTTTCTCTTTGTAGCCTCTG 58.828 45.833 0.00 0.00 0.00 3.35
194 195 4.965200 AGTTTCTCTTTGTAGCCTCTGT 57.035 40.909 0.00 0.00 0.00 3.41
195 196 5.297569 AGTTTCTCTTTGTAGCCTCTGTT 57.702 39.130 0.00 0.00 0.00 3.16
196 197 5.301555 AGTTTCTCTTTGTAGCCTCTGTTC 58.698 41.667 0.00 0.00 0.00 3.18
197 198 5.071115 AGTTTCTCTTTGTAGCCTCTGTTCT 59.929 40.000 0.00 0.00 0.00 3.01
198 199 5.552870 TTCTCTTTGTAGCCTCTGTTCTT 57.447 39.130 0.00 0.00 0.00 2.52
199 200 6.665992 TTCTCTTTGTAGCCTCTGTTCTTA 57.334 37.500 0.00 0.00 0.00 2.10
200 201 6.859112 TCTCTTTGTAGCCTCTGTTCTTAT 57.141 37.500 0.00 0.00 0.00 1.73
201 202 7.956328 TCTCTTTGTAGCCTCTGTTCTTATA 57.044 36.000 0.00 0.00 0.00 0.98
202 203 8.362464 TCTCTTTGTAGCCTCTGTTCTTATAA 57.638 34.615 0.00 0.00 0.00 0.98
203 204 8.251721 TCTCTTTGTAGCCTCTGTTCTTATAAC 58.748 37.037 0.00 0.00 0.00 1.89
204 205 7.903145 TCTTTGTAGCCTCTGTTCTTATAACA 58.097 34.615 0.00 0.00 0.00 2.41
205 206 8.035394 TCTTTGTAGCCTCTGTTCTTATAACAG 58.965 37.037 10.85 10.85 46.67 3.16
219 220 3.142393 ACAGAGTCTGTTGCCGCT 58.858 55.556 20.34 0.00 42.59 5.52
220 221 1.005630 ACAGAGTCTGTTGCCGCTC 60.006 57.895 20.34 0.00 42.59 5.03
221 222 1.291588 CAGAGTCTGTTGCCGCTCT 59.708 57.895 12.28 0.00 38.69 4.09
222 223 1.013005 CAGAGTCTGTTGCCGCTCTG 61.013 60.000 12.28 6.10 45.64 3.35
223 224 1.739562 GAGTCTGTTGCCGCTCTGG 60.740 63.158 0.00 0.00 42.50 3.86
224 225 2.743928 GTCTGTTGCCGCTCTGGG 60.744 66.667 0.00 0.00 38.63 4.45
225 226 4.020617 TCTGTTGCCGCTCTGGGG 62.021 66.667 0.00 0.00 38.63 4.96
232 233 3.801997 CCGCTCTGGGGCTGGATT 61.802 66.667 0.00 0.00 0.00 3.01
233 234 2.203126 CGCTCTGGGGCTGGATTC 60.203 66.667 0.00 0.00 0.00 2.52
234 235 2.739996 CGCTCTGGGGCTGGATTCT 61.740 63.158 0.00 0.00 0.00 2.40
235 236 1.611965 GCTCTGGGGCTGGATTCTT 59.388 57.895 0.00 0.00 0.00 2.52
236 237 0.465278 GCTCTGGGGCTGGATTCTTC 60.465 60.000 0.00 0.00 0.00 2.87
237 238 1.211456 CTCTGGGGCTGGATTCTTCT 58.789 55.000 0.00 0.00 0.00 2.85
238 239 0.914644 TCTGGGGCTGGATTCTTCTG 59.085 55.000 0.00 0.00 0.00 3.02
239 240 0.914644 CTGGGGCTGGATTCTTCTGA 59.085 55.000 0.00 0.00 0.00 3.27
240 241 1.283029 CTGGGGCTGGATTCTTCTGAA 59.717 52.381 0.00 0.00 36.54 3.02
241 242 1.925255 TGGGGCTGGATTCTTCTGAAT 59.075 47.619 0.00 0.00 44.79 2.57
255 256 6.287589 TCTTCTGAATCTAGACCTTGAACC 57.712 41.667 0.00 0.00 0.00 3.62
256 257 5.780282 TCTTCTGAATCTAGACCTTGAACCA 59.220 40.000 0.00 0.00 0.00 3.67
257 258 6.441924 TCTTCTGAATCTAGACCTTGAACCAT 59.558 38.462 0.00 0.00 0.00 3.55
258 259 6.627087 TCTGAATCTAGACCTTGAACCATT 57.373 37.500 0.00 0.00 0.00 3.16
259 260 6.644347 TCTGAATCTAGACCTTGAACCATTC 58.356 40.000 0.00 0.00 0.00 2.67
260 261 6.441924 TCTGAATCTAGACCTTGAACCATTCT 59.558 38.462 0.00 0.00 0.00 2.40
261 262 7.020827 TGAATCTAGACCTTGAACCATTCTT 57.979 36.000 0.00 0.00 0.00 2.52
262 263 6.881065 TGAATCTAGACCTTGAACCATTCTTG 59.119 38.462 0.00 0.00 0.00 3.02
263 264 5.825593 TCTAGACCTTGAACCATTCTTGT 57.174 39.130 0.00 0.00 0.00 3.16
264 265 6.928348 TCTAGACCTTGAACCATTCTTGTA 57.072 37.500 0.00 0.00 0.00 2.41
265 266 6.936279 TCTAGACCTTGAACCATTCTTGTAG 58.064 40.000 0.00 0.00 0.00 2.74
266 267 4.911390 AGACCTTGAACCATTCTTGTAGG 58.089 43.478 0.00 0.00 0.00 3.18
267 268 4.351111 AGACCTTGAACCATTCTTGTAGGT 59.649 41.667 0.00 0.00 37.46 3.08
274 275 4.828072 ACCATTCTTGTAGGTTCTCTCC 57.172 45.455 0.00 0.00 29.58 3.71
275 276 4.168101 ACCATTCTTGTAGGTTCTCTCCA 58.832 43.478 0.00 0.00 29.58 3.86
276 277 4.020128 ACCATTCTTGTAGGTTCTCTCCAC 60.020 45.833 0.00 0.00 29.58 4.02
277 278 4.223923 CCATTCTTGTAGGTTCTCTCCACT 59.776 45.833 0.00 0.00 0.00 4.00
278 279 4.873746 TTCTTGTAGGTTCTCTCCACTG 57.126 45.455 0.00 0.00 0.00 3.66
279 280 3.845860 TCTTGTAGGTTCTCTCCACTGT 58.154 45.455 0.00 0.00 0.00 3.55
280 281 3.827302 TCTTGTAGGTTCTCTCCACTGTC 59.173 47.826 0.00 0.00 0.00 3.51
281 282 3.527507 TGTAGGTTCTCTCCACTGTCT 57.472 47.619 0.00 0.00 0.00 3.41
282 283 3.845860 TGTAGGTTCTCTCCACTGTCTT 58.154 45.455 0.00 0.00 0.00 3.01
283 284 4.223953 TGTAGGTTCTCTCCACTGTCTTT 58.776 43.478 0.00 0.00 0.00 2.52
284 285 3.760580 AGGTTCTCTCCACTGTCTTTG 57.239 47.619 0.00 0.00 0.00 2.77
285 286 2.370189 AGGTTCTCTCCACTGTCTTTGG 59.630 50.000 0.00 0.00 35.18 3.28
286 287 2.551071 GGTTCTCTCCACTGTCTTTGGG 60.551 54.545 0.00 0.00 34.56 4.12
287 288 0.687354 TCTCTCCACTGTCTTTGGGC 59.313 55.000 0.00 0.00 34.56 5.36
288 289 0.689623 CTCTCCACTGTCTTTGGGCT 59.310 55.000 0.00 0.00 34.56 5.19
289 290 1.072965 CTCTCCACTGTCTTTGGGCTT 59.927 52.381 0.00 0.00 34.56 4.35
290 291 1.072331 TCTCCACTGTCTTTGGGCTTC 59.928 52.381 0.00 0.00 34.56 3.86
291 292 0.250295 TCCACTGTCTTTGGGCTTCG 60.250 55.000 0.00 0.00 34.56 3.79
292 293 1.237285 CCACTGTCTTTGGGCTTCGG 61.237 60.000 0.00 0.00 0.00 4.30
293 294 1.073199 ACTGTCTTTGGGCTTCGGG 59.927 57.895 0.00 0.00 0.00 5.14
294 295 1.675641 CTGTCTTTGGGCTTCGGGG 60.676 63.158 0.00 0.00 0.00 5.73
295 296 2.124507 CTGTCTTTGGGCTTCGGGGA 62.125 60.000 0.00 0.00 0.00 4.81
296 297 1.377333 GTCTTTGGGCTTCGGGGAG 60.377 63.158 0.00 0.00 0.00 4.30
297 298 2.044946 CTTTGGGCTTCGGGGAGG 60.045 66.667 0.00 0.00 0.00 4.30
298 299 2.530661 TTTGGGCTTCGGGGAGGA 60.531 61.111 0.00 0.00 0.00 3.71
299 300 2.543067 CTTTGGGCTTCGGGGAGGAG 62.543 65.000 0.00 0.00 0.00 3.69
300 301 3.556038 TTGGGCTTCGGGGAGGAGA 62.556 63.158 0.00 0.00 0.00 3.71
301 302 2.687566 GGGCTTCGGGGAGGAGAA 60.688 66.667 0.00 0.00 0.00 2.87
302 303 2.736826 GGGCTTCGGGGAGGAGAAG 61.737 68.421 1.25 1.25 44.77 2.85
303 304 2.736826 GGCTTCGGGGAGGAGAAGG 61.737 68.421 7.23 0.00 42.86 3.46
304 305 2.736826 GCTTCGGGGAGGAGAAGGG 61.737 68.421 7.23 0.00 42.86 3.95
305 306 1.001760 CTTCGGGGAGGAGAAGGGA 59.998 63.158 0.00 0.00 39.94 4.20
306 307 0.399233 CTTCGGGGAGGAGAAGGGAT 60.399 60.000 0.00 0.00 39.94 3.85
307 308 0.691078 TTCGGGGAGGAGAAGGGATG 60.691 60.000 0.00 0.00 0.00 3.51
308 309 2.143419 CGGGGAGGAGAAGGGATGG 61.143 68.421 0.00 0.00 0.00 3.51
309 310 2.456443 GGGGAGGAGAAGGGATGGC 61.456 68.421 0.00 0.00 0.00 4.40
310 311 1.385206 GGGAGGAGAAGGGATGGCT 60.385 63.158 0.00 0.00 0.00 4.75
311 312 0.990818 GGGAGGAGAAGGGATGGCTT 60.991 60.000 0.00 0.00 0.00 4.35
312 313 0.472044 GGAGGAGAAGGGATGGCTTC 59.528 60.000 0.00 0.00 0.00 3.86
313 314 1.506025 GAGGAGAAGGGATGGCTTCT 58.494 55.000 0.00 0.00 41.98 2.85
316 317 1.506025 GAGAAGGGATGGCTTCTCCT 58.494 55.000 2.08 1.15 45.76 3.69
317 318 1.416030 GAGAAGGGATGGCTTCTCCTC 59.584 57.143 2.08 1.70 45.76 3.71
318 319 0.472044 GAAGGGATGGCTTCTCCTCC 59.528 60.000 9.70 0.00 35.26 4.30
319 320 0.045469 AAGGGATGGCTTCTCCTCCT 59.955 55.000 9.70 1.74 34.50 3.69
320 321 0.045469 AGGGATGGCTTCTCCTCCTT 59.955 55.000 0.00 0.00 34.50 3.36
321 322 0.472044 GGGATGGCTTCTCCTCCTTC 59.528 60.000 0.07 0.00 34.50 3.46
322 323 0.472044 GGATGGCTTCTCCTCCTTCC 59.528 60.000 0.07 0.00 38.83 3.46
323 324 1.506025 GATGGCTTCTCCTCCTTCCT 58.494 55.000 0.00 0.00 35.26 3.36
324 325 1.416030 GATGGCTTCTCCTCCTTCCTC 59.584 57.143 0.00 0.00 35.26 3.71
325 326 0.117140 TGGCTTCTCCTCCTTCCTCA 59.883 55.000 0.00 0.00 35.26 3.86
326 327 1.280457 GGCTTCTCCTCCTTCCTCAA 58.720 55.000 0.00 0.00 0.00 3.02
327 328 1.843206 GGCTTCTCCTCCTTCCTCAAT 59.157 52.381 0.00 0.00 0.00 2.57
328 329 2.421248 GGCTTCTCCTCCTTCCTCAATG 60.421 54.545 0.00 0.00 0.00 2.82
329 330 2.238395 GCTTCTCCTCCTTCCTCAATGT 59.762 50.000 0.00 0.00 0.00 2.71
330 331 3.871485 CTTCTCCTCCTTCCTCAATGTG 58.129 50.000 0.00 0.00 0.00 3.21
331 332 2.191400 TCTCCTCCTTCCTCAATGTGG 58.809 52.381 0.00 0.00 0.00 4.17
332 333 0.620556 TCCTCCTTCCTCAATGTGGC 59.379 55.000 0.00 0.00 0.00 5.01
333 334 0.329261 CCTCCTTCCTCAATGTGGCA 59.671 55.000 0.00 0.00 0.00 4.92
334 335 1.681166 CCTCCTTCCTCAATGTGGCAG 60.681 57.143 0.00 0.00 0.00 4.85
335 336 1.004044 CTCCTTCCTCAATGTGGCAGT 59.996 52.381 0.00 0.00 0.00 4.40
336 337 2.237143 CTCCTTCCTCAATGTGGCAGTA 59.763 50.000 0.00 0.00 0.00 2.74
337 338 2.237143 TCCTTCCTCAATGTGGCAGTAG 59.763 50.000 0.00 0.00 0.00 2.57
338 339 2.636830 CTTCCTCAATGTGGCAGTAGG 58.363 52.381 0.00 0.00 0.00 3.18
339 340 1.656587 TCCTCAATGTGGCAGTAGGT 58.343 50.000 0.00 0.00 0.00 3.08
340 341 1.985159 TCCTCAATGTGGCAGTAGGTT 59.015 47.619 0.00 0.00 0.00 3.50
341 342 2.086869 CCTCAATGTGGCAGTAGGTTG 58.913 52.381 0.00 0.00 0.00 3.77
342 343 2.290260 CCTCAATGTGGCAGTAGGTTGA 60.290 50.000 0.00 0.00 0.00 3.18
343 344 3.614092 CTCAATGTGGCAGTAGGTTGAT 58.386 45.455 0.00 0.00 0.00 2.57
344 345 3.609853 TCAATGTGGCAGTAGGTTGATC 58.390 45.455 0.00 0.00 0.00 2.92
345 346 2.684881 CAATGTGGCAGTAGGTTGATCC 59.315 50.000 0.00 0.00 0.00 3.36
346 347 0.249120 TGTGGCAGTAGGTTGATCCG 59.751 55.000 0.00 0.00 41.99 4.18
347 348 0.249398 GTGGCAGTAGGTTGATCCGT 59.751 55.000 0.00 0.00 41.99 4.69
348 349 0.981183 TGGCAGTAGGTTGATCCGTT 59.019 50.000 0.00 0.00 41.99 4.44
349 350 2.093869 GTGGCAGTAGGTTGATCCGTTA 60.094 50.000 0.00 0.00 41.99 3.18
350 351 2.167693 TGGCAGTAGGTTGATCCGTTAG 59.832 50.000 0.00 0.00 41.99 2.34
351 352 2.429610 GGCAGTAGGTTGATCCGTTAGA 59.570 50.000 0.00 0.00 41.99 2.10
352 353 3.118884 GGCAGTAGGTTGATCCGTTAGAA 60.119 47.826 0.00 0.00 41.99 2.10
353 354 4.113354 GCAGTAGGTTGATCCGTTAGAAG 58.887 47.826 0.00 0.00 41.99 2.85
354 355 4.142227 GCAGTAGGTTGATCCGTTAGAAGA 60.142 45.833 0.00 0.00 41.99 2.87
355 356 5.583495 CAGTAGGTTGATCCGTTAGAAGAG 58.417 45.833 0.00 0.00 41.99 2.85
356 357 5.125739 CAGTAGGTTGATCCGTTAGAAGAGT 59.874 44.000 0.00 0.00 41.99 3.24
357 358 4.457834 AGGTTGATCCGTTAGAAGAGTG 57.542 45.455 0.00 0.00 41.99 3.51
358 359 3.195825 AGGTTGATCCGTTAGAAGAGTGG 59.804 47.826 0.00 0.00 41.99 4.00
359 360 3.194968 GGTTGATCCGTTAGAAGAGTGGA 59.805 47.826 0.00 0.00 0.00 4.02
360 361 4.425520 GTTGATCCGTTAGAAGAGTGGAG 58.574 47.826 0.00 0.00 31.10 3.86
361 362 3.698289 TGATCCGTTAGAAGAGTGGAGT 58.302 45.455 0.00 0.00 31.10 3.85
362 363 4.087182 TGATCCGTTAGAAGAGTGGAGTT 58.913 43.478 0.00 0.00 31.10 3.01
363 364 4.527038 TGATCCGTTAGAAGAGTGGAGTTT 59.473 41.667 0.00 0.00 31.10 2.66
364 365 4.516365 TCCGTTAGAAGAGTGGAGTTTC 57.484 45.455 0.00 0.00 0.00 2.78
365 366 3.057736 TCCGTTAGAAGAGTGGAGTTTCG 60.058 47.826 0.00 0.00 0.00 3.46
366 367 3.305199 CCGTTAGAAGAGTGGAGTTTCGT 60.305 47.826 0.00 0.00 0.00 3.85
367 368 3.669122 CGTTAGAAGAGTGGAGTTTCGTG 59.331 47.826 0.00 0.00 0.00 4.35
368 369 4.618965 GTTAGAAGAGTGGAGTTTCGTGT 58.381 43.478 0.00 0.00 0.00 4.49
369 370 3.821421 AGAAGAGTGGAGTTTCGTGTT 57.179 42.857 0.00 0.00 0.00 3.32
370 371 3.458189 AGAAGAGTGGAGTTTCGTGTTG 58.542 45.455 0.00 0.00 0.00 3.33
371 372 3.132289 AGAAGAGTGGAGTTTCGTGTTGA 59.868 43.478 0.00 0.00 0.00 3.18
372 373 3.099267 AGAGTGGAGTTTCGTGTTGAG 57.901 47.619 0.00 0.00 0.00 3.02
373 374 2.135933 GAGTGGAGTTTCGTGTTGAGG 58.864 52.381 0.00 0.00 0.00 3.86
374 375 1.202651 AGTGGAGTTTCGTGTTGAGGG 60.203 52.381 0.00 0.00 0.00 4.30
375 376 0.107831 TGGAGTTTCGTGTTGAGGGG 59.892 55.000 0.00 0.00 0.00 4.79
376 377 0.395312 GGAGTTTCGTGTTGAGGGGA 59.605 55.000 0.00 0.00 0.00 4.81
377 378 1.608283 GGAGTTTCGTGTTGAGGGGAG 60.608 57.143 0.00 0.00 0.00 4.30
378 379 1.070289 GAGTTTCGTGTTGAGGGGAGT 59.930 52.381 0.00 0.00 0.00 3.85
379 380 1.202651 AGTTTCGTGTTGAGGGGAGTG 60.203 52.381 0.00 0.00 0.00 3.51
380 381 0.834612 TTTCGTGTTGAGGGGAGTGT 59.165 50.000 0.00 0.00 0.00 3.55
381 382 0.105964 TTCGTGTTGAGGGGAGTGTG 59.894 55.000 0.00 0.00 0.00 3.82
382 383 1.046472 TCGTGTTGAGGGGAGTGTGT 61.046 55.000 0.00 0.00 0.00 3.72
383 384 0.179056 CGTGTTGAGGGGAGTGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
384 385 1.594331 GTGTTGAGGGGAGTGTGTTC 58.406 55.000 0.00 0.00 0.00 3.18
385 386 0.472471 TGTTGAGGGGAGTGTGTTCC 59.528 55.000 0.00 0.00 36.46 3.62
386 387 0.765510 GTTGAGGGGAGTGTGTTCCT 59.234 55.000 0.00 0.00 37.40 3.36
387 388 1.143073 GTTGAGGGGAGTGTGTTCCTT 59.857 52.381 0.00 0.00 37.40 3.36
388 389 1.518367 TGAGGGGAGTGTGTTCCTTT 58.482 50.000 0.00 0.00 37.40 3.11
389 390 1.850345 TGAGGGGAGTGTGTTCCTTTT 59.150 47.619 0.00 0.00 37.40 2.27
390 391 2.243736 TGAGGGGAGTGTGTTCCTTTTT 59.756 45.455 0.00 0.00 37.40 1.94
416 417 5.499139 TTTTTCTGTAGCAAGACTTGGTG 57.501 39.130 26.23 12.40 42.14 4.17
417 418 4.415881 TTTCTGTAGCAAGACTTGGTGA 57.584 40.909 26.23 14.34 42.14 4.02
418 419 4.623932 TTCTGTAGCAAGACTTGGTGAT 57.376 40.909 26.23 0.00 42.14 3.06
419 420 4.623932 TCTGTAGCAAGACTTGGTGATT 57.376 40.909 26.23 0.00 42.14 2.57
420 421 4.973168 TCTGTAGCAAGACTTGGTGATTT 58.027 39.130 26.23 0.00 42.14 2.17
421 422 5.376625 TCTGTAGCAAGACTTGGTGATTTT 58.623 37.500 26.23 0.00 42.14 1.82
422 423 5.827797 TCTGTAGCAAGACTTGGTGATTTTT 59.172 36.000 26.23 0.00 42.14 1.94
423 424 5.830912 TGTAGCAAGACTTGGTGATTTTTG 58.169 37.500 26.23 0.00 42.14 2.44
424 425 5.359576 TGTAGCAAGACTTGGTGATTTTTGT 59.640 36.000 26.23 0.00 42.14 2.83
425 426 5.343307 AGCAAGACTTGGTGATTTTTGTT 57.657 34.783 18.73 0.00 40.37 2.83
426 427 6.463995 AGCAAGACTTGGTGATTTTTGTTA 57.536 33.333 18.73 0.00 40.37 2.41
427 428 6.872920 AGCAAGACTTGGTGATTTTTGTTAA 58.127 32.000 18.73 0.00 40.37 2.01
428 429 7.500141 AGCAAGACTTGGTGATTTTTGTTAAT 58.500 30.769 18.73 0.00 40.37 1.40
429 430 7.439056 AGCAAGACTTGGTGATTTTTGTTAATG 59.561 33.333 18.73 0.00 40.37 1.90
430 431 7.307337 GCAAGACTTGGTGATTTTTGTTAATGG 60.307 37.037 16.80 0.00 0.00 3.16
431 432 7.595819 AGACTTGGTGATTTTTGTTAATGGA 57.404 32.000 0.00 0.00 0.00 3.41
432 433 8.017418 AGACTTGGTGATTTTTGTTAATGGAA 57.983 30.769 0.00 0.00 0.00 3.53
433 434 8.482128 AGACTTGGTGATTTTTGTTAATGGAAA 58.518 29.630 0.00 0.00 0.00 3.13
434 435 9.271828 GACTTGGTGATTTTTGTTAATGGAAAT 57.728 29.630 0.00 0.00 0.00 2.17
435 436 9.271828 ACTTGGTGATTTTTGTTAATGGAAATC 57.728 29.630 10.80 10.80 38.40 2.17
436 437 7.881643 TGGTGATTTTTGTTAATGGAAATCG 57.118 32.000 12.02 0.00 39.93 3.34
437 438 6.870965 TGGTGATTTTTGTTAATGGAAATCGG 59.129 34.615 12.02 0.00 39.93 4.18
438 439 7.093992 GGTGATTTTTGTTAATGGAAATCGGA 58.906 34.615 12.02 0.00 39.93 4.55
439 440 7.275560 GGTGATTTTTGTTAATGGAAATCGGAG 59.724 37.037 12.02 0.00 39.93 4.63
440 441 8.026607 GTGATTTTTGTTAATGGAAATCGGAGA 58.973 33.333 12.02 0.00 39.93 3.71
441 442 8.243426 TGATTTTTGTTAATGGAAATCGGAGAG 58.757 33.333 12.02 0.00 43.63 3.20
442 443 7.753309 TTTTTGTTAATGGAAATCGGAGAGA 57.247 32.000 0.00 0.00 43.63 3.10
443 444 6.985188 TTTGTTAATGGAAATCGGAGAGAG 57.015 37.500 0.00 0.00 43.63 3.20
444 445 5.677319 TGTTAATGGAAATCGGAGAGAGT 57.323 39.130 0.00 0.00 43.63 3.24
445 446 5.419542 TGTTAATGGAAATCGGAGAGAGTG 58.580 41.667 0.00 0.00 43.63 3.51
446 447 2.611225 ATGGAAATCGGAGAGAGTGC 57.389 50.000 0.00 0.00 43.63 4.40
447 448 1.561643 TGGAAATCGGAGAGAGTGCT 58.438 50.000 0.00 0.00 43.63 4.40
448 449 1.478510 TGGAAATCGGAGAGAGTGCTC 59.521 52.381 0.00 0.00 43.63 4.26
525 526 6.083630 GCTTGTGTTTCGCAACAATTCTATA 58.916 36.000 1.20 0.00 44.72 1.31
542 543 0.183014 ATATGCTGCTGCTCTTGGCT 59.817 50.000 17.00 0.00 42.39 4.75
566 568 9.155975 GCTCATCTGAAAAAGTCTTCTTGTATA 57.844 33.333 0.00 0.00 33.79 1.47
570 572 9.883142 ATCTGAAAAAGTCTTCTTGTATAGGAG 57.117 33.333 0.00 0.00 33.79 3.69
603 605 2.884639 GTTCCTGTGTGCCACTTGTTAT 59.115 45.455 0.00 0.00 35.11 1.89
606 608 4.720046 TCCTGTGTGCCACTTGTTATAAA 58.280 39.130 0.00 0.00 35.11 1.40
614 619 4.042311 TGCCACTTGTTATAAACCTGGAGA 59.958 41.667 0.00 0.00 0.00 3.71
648 653 4.135153 CCTACGTGCCGAGCAGCT 62.135 66.667 0.00 0.00 40.08 4.24
650 655 3.633094 CTACGTGCCGAGCAGCTGT 62.633 63.158 16.64 1.59 40.08 4.40
654 659 3.694538 TGCCGAGCAGCTGTAGCA 61.695 61.111 16.64 15.69 45.16 3.49
655 660 2.889503 GCCGAGCAGCTGTAGCAG 60.890 66.667 16.64 2.09 45.16 4.24
657 662 2.714991 CCGAGCAGCTGTAGCAGGA 61.715 63.158 16.64 0.00 45.16 3.86
658 663 1.226916 CGAGCAGCTGTAGCAGGAG 60.227 63.158 16.64 0.00 45.16 3.69
786 793 4.808895 CGATTCCGACCAAATTCATAGTCA 59.191 41.667 0.00 0.00 38.22 3.41
787 794 5.050769 CGATTCCGACCAAATTCATAGTCAG 60.051 44.000 0.00 0.00 38.22 3.51
792 799 4.330074 CGACCAAATTCATAGTCAGGACAC 59.670 45.833 1.84 0.00 0.00 3.67
793 800 4.253685 ACCAAATTCATAGTCAGGACACG 58.746 43.478 1.84 0.00 0.00 4.49
809 816 2.535166 GACACGTACACGCACTAAAACA 59.465 45.455 0.85 0.00 44.43 2.83
816 823 2.791004 ACACGCACTAAAACACGTCTAC 59.209 45.455 0.00 0.00 36.45 2.59
879 934 7.719871 TCTTATAATTCGGAATAGAGGGAGG 57.280 40.000 3.22 0.00 0.00 4.30
960 1022 5.955488 GCAGAAGCGGATATAAGTCTATGA 58.045 41.667 0.00 0.00 0.00 2.15
961 1023 6.568869 GCAGAAGCGGATATAAGTCTATGAT 58.431 40.000 0.00 0.00 0.00 2.45
962 1024 7.708051 GCAGAAGCGGATATAAGTCTATGATA 58.292 38.462 0.00 0.00 0.00 2.15
963 1025 8.356657 GCAGAAGCGGATATAAGTCTATGATAT 58.643 37.037 0.00 0.00 0.00 1.63
966 1028 9.685828 GAAGCGGATATAAGTCTATGATATTCC 57.314 37.037 0.00 0.00 0.00 3.01
967 1029 8.768501 AGCGGATATAAGTCTATGATATTCCA 57.231 34.615 0.00 0.00 0.00 3.53
968 1030 8.855110 AGCGGATATAAGTCTATGATATTCCAG 58.145 37.037 0.00 0.00 0.00 3.86
969 1031 7.596995 GCGGATATAAGTCTATGATATTCCAGC 59.403 40.741 0.00 0.00 0.00 4.85
970 1032 8.633561 CGGATATAAGTCTATGATATTCCAGCA 58.366 37.037 0.00 0.00 0.00 4.41
971 1033 9.979578 GGATATAAGTCTATGATATTCCAGCAG 57.020 37.037 0.00 0.00 0.00 4.24
972 1034 9.979578 GATATAAGTCTATGATATTCCAGCAGG 57.020 37.037 0.00 0.00 0.00 4.85
973 1035 9.720874 ATATAAGTCTATGATATTCCAGCAGGA 57.279 33.333 0.00 0.00 43.93 3.86
974 1036 5.736951 AGTCTATGATATTCCAGCAGGAC 57.263 43.478 0.00 0.00 45.73 3.85
975 1037 4.219507 AGTCTATGATATTCCAGCAGGACG 59.780 45.833 0.00 0.00 45.73 4.79
976 1038 4.021894 GTCTATGATATTCCAGCAGGACGT 60.022 45.833 0.00 0.00 45.73 4.34
977 1039 2.602257 TGATATTCCAGCAGGACGTG 57.398 50.000 0.00 0.00 45.73 4.49
1068 1133 0.326238 AGAATCCGCCCCCTACAGAA 60.326 55.000 0.00 0.00 0.00 3.02
1074 1139 1.690985 GCCCCCTACAGAAGCCTCT 60.691 63.158 0.00 0.00 0.00 3.69
1267 1332 0.527817 GAACATGGACGGGAGCTACG 60.528 60.000 8.58 8.58 37.36 3.51
1360 1425 1.400142 GCAGGCAATTACGTACATGCA 59.600 47.619 24.89 0.00 40.51 3.96
1410 1475 1.377994 CAGTGAAGGGCTGGCTCTT 59.622 57.895 7.48 7.48 39.85 2.85
1424 1489 1.972660 GCTCTTGCCCTCCACCGTAT 61.973 60.000 0.00 0.00 0.00 3.06
1450 1515 3.264998 TGCCGATTGTCATTGAGATGA 57.735 42.857 0.00 0.00 39.92 2.92
1484 1549 0.294887 GTGTCGATGCTTAACTCGCG 59.705 55.000 0.00 0.00 34.94 5.87
1518 1583 2.811902 CGAACCATCGTGTACTCGTA 57.188 50.000 16.12 4.87 44.06 3.43
1554 1619 0.901827 TAATTGCAGCTGACCCTCGA 59.098 50.000 20.43 0.00 0.00 4.04
1569 1634 7.419711 TGACCCTCGAAAGATTTCTATTAGT 57.580 36.000 3.98 0.00 40.84 2.24
1666 1731 0.895100 GTTGGGATCTGGCTTGCACA 60.895 55.000 0.00 0.00 0.00 4.57
1727 1793 7.822658 TGAGTAATGAAATTCCTTTTTACCCG 58.177 34.615 0.00 0.00 37.87 5.28
1793 1859 2.158475 TGCAAAAGACTGGGGAATCTGT 60.158 45.455 0.00 0.00 0.00 3.41
1963 2042 0.741915 GCGGAAGGAATCTCGAGTCT 59.258 55.000 13.13 0.00 0.00 3.24
2281 2360 2.114670 CCCCAACATCATCGCGCTT 61.115 57.895 5.56 0.00 0.00 4.68
2322 2401 1.133606 GTACCCTCCCTCCTCTCTCTG 60.134 61.905 0.00 0.00 0.00 3.35
2328 2411 2.507886 CTCCCTCCTCTCTCTGTCTGTA 59.492 54.545 0.00 0.00 0.00 2.74
2332 2415 4.386312 CCCTCCTCTCTCTGTCTGTATCTT 60.386 50.000 0.00 0.00 0.00 2.40
2344 2427 2.352651 TCTGTATCTTGCGCAATTGCTC 59.647 45.455 25.26 20.48 39.32 4.26
2384 2478 5.868043 TTTATGTCATTGTCTGCTGTCTG 57.132 39.130 0.00 0.00 0.00 3.51
2406 2502 6.049955 TGTTAGTATTAGCCTGATATGCCC 57.950 41.667 0.00 0.00 0.00 5.36
2437 2533 1.201181 GCCGCTGATGACGATCTCTAT 59.799 52.381 0.00 0.00 0.00 1.98
2450 2546 6.475727 TGACGATCTCTATTTCGATTTGGTTC 59.524 38.462 0.00 0.00 38.67 3.62
2492 2588 4.497300 CAACCCAAGCAAATGATAGGTTG 58.503 43.478 14.99 14.99 44.67 3.77
2524 2622 3.918270 GTCCCCCTCTCCTAGTACTATCT 59.082 52.174 2.33 0.00 0.00 1.98
2599 2699 8.378565 AGATTCCAGAAGAATAACTGTTTCTCA 58.621 33.333 0.00 0.00 45.52 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.046285 GCCACCCATACGCTGCTTT 61.046 57.895 0.00 0.00 0.00 3.51
1 2 2.438434 GCCACCCATACGCTGCTT 60.438 61.111 0.00 0.00 0.00 3.91
2 3 4.838152 CGCCACCCATACGCTGCT 62.838 66.667 0.00 0.00 0.00 4.24
7 8 3.673956 TTCAGGCGCCACCCATACG 62.674 63.158 31.54 6.01 40.58 3.06
8 9 1.819632 CTTCAGGCGCCACCCATAC 60.820 63.158 31.54 0.00 40.58 2.39
9 10 1.992834 TCTTCAGGCGCCACCCATA 60.993 57.895 31.54 6.22 40.58 2.74
10 11 3.329889 TCTTCAGGCGCCACCCAT 61.330 61.111 31.54 3.61 40.58 4.00
11 12 4.329545 GTCTTCAGGCGCCACCCA 62.330 66.667 31.54 8.44 40.58 4.51
12 13 4.021925 AGTCTTCAGGCGCCACCC 62.022 66.667 31.54 9.84 40.58 4.61
13 14 2.743928 CAGTCTTCAGGCGCCACC 60.744 66.667 31.54 9.06 39.61 4.61
14 15 2.743928 CCAGTCTTCAGGCGCCAC 60.744 66.667 31.54 18.01 0.00 5.01
15 16 4.020617 CCCAGTCTTCAGGCGCCA 62.021 66.667 31.54 5.56 0.00 5.69
16 17 3.672295 CTCCCAGTCTTCAGGCGCC 62.672 68.421 21.89 21.89 0.00 6.53
17 18 2.125350 CTCCCAGTCTTCAGGCGC 60.125 66.667 0.00 0.00 0.00 6.53
18 19 1.333636 ATCCTCCCAGTCTTCAGGCG 61.334 60.000 0.00 0.00 0.00 5.52
19 20 0.467804 GATCCTCCCAGTCTTCAGGC 59.532 60.000 0.00 0.00 0.00 4.85
20 21 0.749649 CGATCCTCCCAGTCTTCAGG 59.250 60.000 0.00 0.00 0.00 3.86
21 22 1.769026 TCGATCCTCCCAGTCTTCAG 58.231 55.000 0.00 0.00 0.00 3.02
22 23 2.103373 CTTCGATCCTCCCAGTCTTCA 58.897 52.381 0.00 0.00 0.00 3.02
23 24 1.410882 CCTTCGATCCTCCCAGTCTTC 59.589 57.143 0.00 0.00 0.00 2.87
24 25 1.490574 CCTTCGATCCTCCCAGTCTT 58.509 55.000 0.00 0.00 0.00 3.01
25 26 0.397816 CCCTTCGATCCTCCCAGTCT 60.398 60.000 0.00 0.00 0.00 3.24
26 27 0.688087 ACCCTTCGATCCTCCCAGTC 60.688 60.000 0.00 0.00 0.00 3.51
27 28 0.635009 TACCCTTCGATCCTCCCAGT 59.365 55.000 0.00 0.00 0.00 4.00
28 29 1.413077 GTTACCCTTCGATCCTCCCAG 59.587 57.143 0.00 0.00 0.00 4.45
29 30 1.007963 AGTTACCCTTCGATCCTCCCA 59.992 52.381 0.00 0.00 0.00 4.37
30 31 1.413077 CAGTTACCCTTCGATCCTCCC 59.587 57.143 0.00 0.00 0.00 4.30
31 32 2.385803 TCAGTTACCCTTCGATCCTCC 58.614 52.381 0.00 0.00 0.00 4.30
32 33 3.738590 GCTTCAGTTACCCTTCGATCCTC 60.739 52.174 0.00 0.00 0.00 3.71
33 34 2.168728 GCTTCAGTTACCCTTCGATCCT 59.831 50.000 0.00 0.00 0.00 3.24
34 35 2.552031 GCTTCAGTTACCCTTCGATCC 58.448 52.381 0.00 0.00 0.00 3.36
35 36 2.552031 GGCTTCAGTTACCCTTCGATC 58.448 52.381 0.00 0.00 0.00 3.69
36 37 1.209747 GGGCTTCAGTTACCCTTCGAT 59.790 52.381 0.00 0.00 40.75 3.59
37 38 0.611714 GGGCTTCAGTTACCCTTCGA 59.388 55.000 0.00 0.00 40.75 3.71
38 39 3.154589 GGGCTTCAGTTACCCTTCG 57.845 57.895 0.00 0.00 40.75 3.79
42 43 0.914902 AGGGAGGGCTTCAGTTACCC 60.915 60.000 0.00 0.00 44.62 3.69
43 44 0.253327 CAGGGAGGGCTTCAGTTACC 59.747 60.000 0.00 0.00 0.00 2.85
44 45 0.393132 GCAGGGAGGGCTTCAGTTAC 60.393 60.000 0.00 0.00 0.00 2.50
45 46 0.547712 AGCAGGGAGGGCTTCAGTTA 60.548 55.000 0.00 0.00 38.81 2.24
46 47 1.849823 AGCAGGGAGGGCTTCAGTT 60.850 57.895 0.00 0.00 38.81 3.16
47 48 2.204059 AGCAGGGAGGGCTTCAGT 60.204 61.111 0.00 0.00 38.81 3.41
48 49 2.271497 CAGCAGGGAGGGCTTCAG 59.729 66.667 0.00 0.00 40.23 3.02
49 50 2.530151 ACAGCAGGGAGGGCTTCA 60.530 61.111 0.00 0.00 40.23 3.02
50 51 1.919600 ATCACAGCAGGGAGGGCTTC 61.920 60.000 0.00 0.00 40.23 3.86
51 52 1.927527 ATCACAGCAGGGAGGGCTT 60.928 57.895 0.00 0.00 40.23 4.35
52 53 2.285969 ATCACAGCAGGGAGGGCT 60.286 61.111 0.00 0.00 43.77 5.19
53 54 2.124403 CATCACAGCAGGGAGGGC 60.124 66.667 0.00 0.00 0.00 5.19
54 55 1.565390 TTCCATCACAGCAGGGAGGG 61.565 60.000 5.58 5.58 36.35 4.30
55 56 0.329261 TTTCCATCACAGCAGGGAGG 59.671 55.000 0.00 0.00 0.00 4.30
56 57 2.205022 TTTTCCATCACAGCAGGGAG 57.795 50.000 0.00 0.00 0.00 4.30
57 58 2.673775 TTTTTCCATCACAGCAGGGA 57.326 45.000 0.00 0.00 0.00 4.20
58 59 3.094572 AGATTTTTCCATCACAGCAGGG 58.905 45.455 0.00 0.00 0.00 4.45
59 60 4.491676 CAAGATTTTTCCATCACAGCAGG 58.508 43.478 0.00 0.00 0.00 4.85
60 61 4.491676 CCAAGATTTTTCCATCACAGCAG 58.508 43.478 0.00 0.00 0.00 4.24
61 62 3.306225 GCCAAGATTTTTCCATCACAGCA 60.306 43.478 0.00 0.00 0.00 4.41
62 63 3.056322 AGCCAAGATTTTTCCATCACAGC 60.056 43.478 0.00 0.00 0.00 4.40
63 64 4.381292 GGAGCCAAGATTTTTCCATCACAG 60.381 45.833 0.00 0.00 0.00 3.66
64 65 3.511146 GGAGCCAAGATTTTTCCATCACA 59.489 43.478 0.00 0.00 0.00 3.58
65 66 3.766051 AGGAGCCAAGATTTTTCCATCAC 59.234 43.478 0.00 0.00 0.00 3.06
66 67 3.765511 CAGGAGCCAAGATTTTTCCATCA 59.234 43.478 0.00 0.00 0.00 3.07
67 68 3.429960 GCAGGAGCCAAGATTTTTCCATC 60.430 47.826 0.00 0.00 33.58 3.51
68 69 2.498885 GCAGGAGCCAAGATTTTTCCAT 59.501 45.455 0.00 0.00 33.58 3.41
69 70 1.895131 GCAGGAGCCAAGATTTTTCCA 59.105 47.619 0.00 0.00 33.58 3.53
70 71 2.662006 GCAGGAGCCAAGATTTTTCC 57.338 50.000 0.00 0.00 33.58 3.13
82 83 0.172803 CAGCATGAAAAGGCAGGAGC 59.827 55.000 0.00 0.00 39.69 4.70
83 84 0.815734 CCAGCATGAAAAGGCAGGAG 59.184 55.000 0.00 0.00 38.83 3.69
84 85 1.252904 GCCAGCATGAAAAGGCAGGA 61.253 55.000 11.66 0.00 46.26 3.86
85 86 1.217244 GCCAGCATGAAAAGGCAGG 59.783 57.895 11.66 0.00 46.26 4.85
86 87 4.904466 GCCAGCATGAAAAGGCAG 57.096 55.556 11.66 0.00 46.26 4.85
89 90 3.708195 CGAAGCCAGCATGAAAAGG 57.292 52.632 0.00 0.00 39.69 3.11
103 104 3.829948 ACATCAGCAAAATGAAGCGAAG 58.170 40.909 0.00 0.00 35.48 3.79
104 105 3.921119 ACATCAGCAAAATGAAGCGAA 57.079 38.095 0.00 0.00 35.48 4.70
105 106 3.252944 TGAACATCAGCAAAATGAAGCGA 59.747 39.130 0.00 0.00 35.48 4.93
106 107 3.567530 TGAACATCAGCAAAATGAAGCG 58.432 40.909 0.65 0.00 35.48 4.68
107 108 4.620184 GTCTGAACATCAGCAAAATGAAGC 59.380 41.667 2.48 0.00 43.95 3.86
108 109 6.010294 AGTCTGAACATCAGCAAAATGAAG 57.990 37.500 2.48 0.00 43.95 3.02
109 110 7.229306 ACTTAGTCTGAACATCAGCAAAATGAA 59.771 33.333 2.48 0.00 43.95 2.57
110 111 6.712095 ACTTAGTCTGAACATCAGCAAAATGA 59.288 34.615 2.48 0.00 43.95 2.57
111 112 6.800408 CACTTAGTCTGAACATCAGCAAAATG 59.200 38.462 2.48 0.00 43.95 2.32
112 113 6.072286 CCACTTAGTCTGAACATCAGCAAAAT 60.072 38.462 2.48 0.00 43.95 1.82
113 114 5.239306 CCACTTAGTCTGAACATCAGCAAAA 59.761 40.000 2.48 0.00 43.95 2.44
114 115 4.756642 CCACTTAGTCTGAACATCAGCAAA 59.243 41.667 2.48 0.00 43.95 3.68
115 116 4.040339 TCCACTTAGTCTGAACATCAGCAA 59.960 41.667 2.48 0.00 43.95 3.91
116 117 3.578282 TCCACTTAGTCTGAACATCAGCA 59.422 43.478 2.48 0.00 43.95 4.41
117 118 4.193826 TCCACTTAGTCTGAACATCAGC 57.806 45.455 2.48 0.00 43.95 4.26
118 119 5.809562 GTCATCCACTTAGTCTGAACATCAG 59.190 44.000 0.88 0.88 45.59 2.90
119 120 5.337571 GGTCATCCACTTAGTCTGAACATCA 60.338 44.000 0.91 0.00 0.00 3.07
120 121 5.112686 GGTCATCCACTTAGTCTGAACATC 58.887 45.833 0.91 0.00 0.00 3.06
121 122 4.080863 GGGTCATCCACTTAGTCTGAACAT 60.081 45.833 6.52 0.00 35.00 2.71
122 123 3.260884 GGGTCATCCACTTAGTCTGAACA 59.739 47.826 6.52 0.00 35.00 3.18
123 124 3.515901 AGGGTCATCCACTTAGTCTGAAC 59.484 47.826 0.00 0.00 38.24 3.18
124 125 3.515502 CAGGGTCATCCACTTAGTCTGAA 59.484 47.826 0.00 0.00 38.24 3.02
125 126 3.099905 CAGGGTCATCCACTTAGTCTGA 58.900 50.000 0.00 0.00 38.24 3.27
126 127 2.834549 ACAGGGTCATCCACTTAGTCTG 59.165 50.000 0.00 0.00 38.24 3.51
127 128 3.191888 ACAGGGTCATCCACTTAGTCT 57.808 47.619 0.00 0.00 38.24 3.24
128 129 5.615925 ATTACAGGGTCATCCACTTAGTC 57.384 43.478 0.00 0.00 38.24 2.59
129 130 7.127339 ACAATATTACAGGGTCATCCACTTAGT 59.873 37.037 0.00 0.00 38.24 2.24
130 131 7.442364 CACAATATTACAGGGTCATCCACTTAG 59.558 40.741 0.00 0.00 38.24 2.18
131 132 7.092623 ACACAATATTACAGGGTCATCCACTTA 60.093 37.037 0.00 0.00 38.24 2.24
132 133 6.122277 CACAATATTACAGGGTCATCCACTT 58.878 40.000 0.00 0.00 38.24 3.16
133 134 5.191722 ACACAATATTACAGGGTCATCCACT 59.808 40.000 0.00 0.00 38.24 4.00
134 135 5.437060 ACACAATATTACAGGGTCATCCAC 58.563 41.667 0.00 0.00 38.24 4.02
135 136 5.428457 AGACACAATATTACAGGGTCATCCA 59.572 40.000 8.80 0.00 38.24 3.41
136 137 5.760253 CAGACACAATATTACAGGGTCATCC 59.240 44.000 8.80 0.00 0.00 3.51
137 138 5.237344 GCAGACACAATATTACAGGGTCATC 59.763 44.000 8.80 0.00 0.00 2.92
138 139 5.104360 AGCAGACACAATATTACAGGGTCAT 60.104 40.000 8.80 0.00 0.00 3.06
139 140 4.225042 AGCAGACACAATATTACAGGGTCA 59.775 41.667 8.80 0.00 0.00 4.02
140 141 4.770795 AGCAGACACAATATTACAGGGTC 58.229 43.478 0.00 0.00 0.00 4.46
141 142 4.844349 AGCAGACACAATATTACAGGGT 57.156 40.909 0.00 0.00 0.00 4.34
142 143 8.902540 TTTATAGCAGACACAATATTACAGGG 57.097 34.615 0.00 0.00 0.00 4.45
150 151 9.899661 AACTACCATTTTATAGCAGACACAATA 57.100 29.630 0.00 0.00 0.00 1.90
151 152 8.807948 AACTACCATTTTATAGCAGACACAAT 57.192 30.769 0.00 0.00 0.00 2.71
152 153 8.630054 AAACTACCATTTTATAGCAGACACAA 57.370 30.769 0.00 0.00 0.00 3.33
153 154 8.100791 AGAAACTACCATTTTATAGCAGACACA 58.899 33.333 0.00 0.00 0.00 3.72
154 155 8.494016 AGAAACTACCATTTTATAGCAGACAC 57.506 34.615 0.00 0.00 0.00 3.67
155 156 8.540388 AGAGAAACTACCATTTTATAGCAGACA 58.460 33.333 0.00 0.00 0.00 3.41
156 157 8.950208 AGAGAAACTACCATTTTATAGCAGAC 57.050 34.615 0.00 0.00 0.00 3.51
157 158 9.959721 AAAGAGAAACTACCATTTTATAGCAGA 57.040 29.630 0.00 0.00 0.00 4.26
158 159 9.994432 CAAAGAGAAACTACCATTTTATAGCAG 57.006 33.333 0.00 0.00 0.00 4.24
159 160 9.515226 ACAAAGAGAAACTACCATTTTATAGCA 57.485 29.630 0.00 0.00 0.00 3.49
163 164 8.957466 GGCTACAAAGAGAAACTACCATTTTAT 58.043 33.333 0.00 0.00 0.00 1.40
164 165 8.161425 AGGCTACAAAGAGAAACTACCATTTTA 58.839 33.333 0.00 0.00 0.00 1.52
165 166 7.004691 AGGCTACAAAGAGAAACTACCATTTT 58.995 34.615 0.00 0.00 0.00 1.82
166 167 6.543735 AGGCTACAAAGAGAAACTACCATTT 58.456 36.000 0.00 0.00 0.00 2.32
167 168 6.013293 AGAGGCTACAAAGAGAAACTACCATT 60.013 38.462 0.00 0.00 0.00 3.16
168 169 5.485708 AGAGGCTACAAAGAGAAACTACCAT 59.514 40.000 0.00 0.00 0.00 3.55
169 170 4.838986 AGAGGCTACAAAGAGAAACTACCA 59.161 41.667 0.00 0.00 0.00 3.25
170 171 5.172205 CAGAGGCTACAAAGAGAAACTACC 58.828 45.833 0.00 0.00 0.00 3.18
171 172 5.785243 ACAGAGGCTACAAAGAGAAACTAC 58.215 41.667 0.00 0.00 0.00 2.73
172 173 6.267928 AGAACAGAGGCTACAAAGAGAAACTA 59.732 38.462 0.00 0.00 0.00 2.24
173 174 4.965200 ACAGAGGCTACAAAGAGAAACT 57.035 40.909 0.00 0.00 0.00 2.66
174 175 5.301555 AGAACAGAGGCTACAAAGAGAAAC 58.698 41.667 0.00 0.00 0.00 2.78
175 176 5.552870 AGAACAGAGGCTACAAAGAGAAA 57.447 39.130 0.00 0.00 0.00 2.52
176 177 5.552870 AAGAACAGAGGCTACAAAGAGAA 57.447 39.130 0.00 0.00 0.00 2.87
177 178 6.859112 ATAAGAACAGAGGCTACAAAGAGA 57.141 37.500 0.00 0.00 0.00 3.10
178 179 8.035394 TGTTATAAGAACAGAGGCTACAAAGAG 58.965 37.037 0.00 0.00 0.00 2.85
179 180 7.903145 TGTTATAAGAACAGAGGCTACAAAGA 58.097 34.615 0.00 0.00 0.00 2.52
203 204 1.291588 AGAGCGGCAACAGACTCTG 59.708 57.895 1.45 4.36 38.07 3.35
204 205 1.291588 CAGAGCGGCAACAGACTCT 59.708 57.895 1.45 0.00 40.07 3.24
205 206 1.739562 CCAGAGCGGCAACAGACTC 60.740 63.158 1.45 0.00 0.00 3.36
206 207 2.345244 CCAGAGCGGCAACAGACT 59.655 61.111 1.45 0.00 0.00 3.24
207 208 2.743928 CCCAGAGCGGCAACAGAC 60.744 66.667 1.45 0.00 0.00 3.51
208 209 4.020617 CCCCAGAGCGGCAACAGA 62.021 66.667 1.45 0.00 0.00 3.41
215 216 3.764160 GAATCCAGCCCCAGAGCGG 62.764 68.421 0.00 0.00 38.01 5.52
216 217 2.203126 GAATCCAGCCCCAGAGCG 60.203 66.667 0.00 0.00 38.01 5.03
217 218 0.465278 GAAGAATCCAGCCCCAGAGC 60.465 60.000 0.00 0.00 0.00 4.09
218 219 1.134159 CAGAAGAATCCAGCCCCAGAG 60.134 57.143 0.00 0.00 0.00 3.35
219 220 0.914644 CAGAAGAATCCAGCCCCAGA 59.085 55.000 0.00 0.00 0.00 3.86
220 221 0.914644 TCAGAAGAATCCAGCCCCAG 59.085 55.000 0.00 0.00 0.00 4.45
221 222 1.371467 TTCAGAAGAATCCAGCCCCA 58.629 50.000 0.00 0.00 0.00 4.96
222 223 2.744352 ATTCAGAAGAATCCAGCCCC 57.256 50.000 0.00 0.00 40.39 5.80
230 231 7.038017 TGGTTCAAGGTCTAGATTCAGAAGAAT 60.038 37.037 0.00 0.00 46.85 2.40
231 232 6.270000 TGGTTCAAGGTCTAGATTCAGAAGAA 59.730 38.462 0.00 0.00 38.31 2.52
232 233 5.780282 TGGTTCAAGGTCTAGATTCAGAAGA 59.220 40.000 0.00 0.00 0.00 2.87
233 234 6.042638 TGGTTCAAGGTCTAGATTCAGAAG 57.957 41.667 0.00 0.00 0.00 2.85
234 235 6.627087 ATGGTTCAAGGTCTAGATTCAGAA 57.373 37.500 0.00 0.00 0.00 3.02
235 236 6.441924 AGAATGGTTCAAGGTCTAGATTCAGA 59.558 38.462 0.00 0.00 0.00 3.27
236 237 6.648192 AGAATGGTTCAAGGTCTAGATTCAG 58.352 40.000 0.00 0.00 0.00 3.02
237 238 6.627087 AGAATGGTTCAAGGTCTAGATTCA 57.373 37.500 0.00 0.00 0.00 2.57
238 239 6.881602 ACAAGAATGGTTCAAGGTCTAGATTC 59.118 38.462 0.00 0.00 0.00 2.52
239 240 6.784031 ACAAGAATGGTTCAAGGTCTAGATT 58.216 36.000 0.00 0.00 0.00 2.40
240 241 6.380079 ACAAGAATGGTTCAAGGTCTAGAT 57.620 37.500 0.00 0.00 0.00 1.98
241 242 5.825593 ACAAGAATGGTTCAAGGTCTAGA 57.174 39.130 0.00 0.00 0.00 2.43
242 243 6.109359 CCTACAAGAATGGTTCAAGGTCTAG 58.891 44.000 0.00 0.00 0.00 2.43
243 244 5.546499 ACCTACAAGAATGGTTCAAGGTCTA 59.454 40.000 0.00 0.00 30.17 2.59
244 245 4.351111 ACCTACAAGAATGGTTCAAGGTCT 59.649 41.667 0.00 0.00 30.17 3.85
245 246 4.652822 ACCTACAAGAATGGTTCAAGGTC 58.347 43.478 0.00 0.00 30.17 3.85
246 247 4.724279 ACCTACAAGAATGGTTCAAGGT 57.276 40.909 0.00 0.00 0.00 3.50
252 253 4.597507 TGGAGAGAACCTACAAGAATGGTT 59.402 41.667 0.00 0.00 45.57 3.67
253 254 4.020128 GTGGAGAGAACCTACAAGAATGGT 60.020 45.833 0.00 0.00 37.50 3.55
254 255 4.223923 AGTGGAGAGAACCTACAAGAATGG 59.776 45.833 0.00 0.00 37.50 3.16
255 256 5.174395 CAGTGGAGAGAACCTACAAGAATG 58.826 45.833 0.00 0.00 37.50 2.67
256 257 4.841246 ACAGTGGAGAGAACCTACAAGAAT 59.159 41.667 0.00 0.00 37.50 2.40
257 258 4.223953 ACAGTGGAGAGAACCTACAAGAA 58.776 43.478 0.00 0.00 37.50 2.52
258 259 3.827302 GACAGTGGAGAGAACCTACAAGA 59.173 47.826 0.00 0.00 37.50 3.02
259 260 3.829601 AGACAGTGGAGAGAACCTACAAG 59.170 47.826 0.00 0.00 37.50 3.16
260 261 3.845860 AGACAGTGGAGAGAACCTACAA 58.154 45.455 0.00 0.00 37.50 2.41
261 262 3.527507 AGACAGTGGAGAGAACCTACA 57.472 47.619 0.00 0.00 31.94 2.74
262 263 4.561105 CAAAGACAGTGGAGAGAACCTAC 58.439 47.826 0.00 0.00 0.00 3.18
263 264 3.578716 CCAAAGACAGTGGAGAGAACCTA 59.421 47.826 0.00 0.00 38.54 3.08
264 265 2.370189 CCAAAGACAGTGGAGAGAACCT 59.630 50.000 0.00 0.00 38.54 3.50
265 266 2.551071 CCCAAAGACAGTGGAGAGAACC 60.551 54.545 0.00 0.00 38.54 3.62
266 267 2.772287 CCCAAAGACAGTGGAGAGAAC 58.228 52.381 0.00 0.00 38.54 3.01
267 268 1.072331 GCCCAAAGACAGTGGAGAGAA 59.928 52.381 0.00 0.00 38.54 2.87
268 269 0.687354 GCCCAAAGACAGTGGAGAGA 59.313 55.000 0.00 0.00 38.54 3.10
269 270 0.689623 AGCCCAAAGACAGTGGAGAG 59.310 55.000 0.00 0.00 38.54 3.20
270 271 1.072331 GAAGCCCAAAGACAGTGGAGA 59.928 52.381 0.00 0.00 38.54 3.71
271 272 1.528129 GAAGCCCAAAGACAGTGGAG 58.472 55.000 0.00 0.00 38.54 3.86
272 273 0.250295 CGAAGCCCAAAGACAGTGGA 60.250 55.000 0.00 0.00 38.54 4.02
273 274 1.237285 CCGAAGCCCAAAGACAGTGG 61.237 60.000 0.00 0.00 35.77 4.00
274 275 1.237285 CCCGAAGCCCAAAGACAGTG 61.237 60.000 0.00 0.00 0.00 3.66
275 276 1.073199 CCCGAAGCCCAAAGACAGT 59.927 57.895 0.00 0.00 0.00 3.55
276 277 1.675641 CCCCGAAGCCCAAAGACAG 60.676 63.158 0.00 0.00 0.00 3.51
277 278 2.124507 CTCCCCGAAGCCCAAAGACA 62.125 60.000 0.00 0.00 0.00 3.41
278 279 1.377333 CTCCCCGAAGCCCAAAGAC 60.377 63.158 0.00 0.00 0.00 3.01
279 280 2.602676 CCTCCCCGAAGCCCAAAGA 61.603 63.158 0.00 0.00 0.00 2.52
280 281 2.044946 CCTCCCCGAAGCCCAAAG 60.045 66.667 0.00 0.00 0.00 2.77
281 282 2.530661 TCCTCCCCGAAGCCCAAA 60.531 61.111 0.00 0.00 0.00 3.28
282 283 3.009115 CTCCTCCCCGAAGCCCAA 61.009 66.667 0.00 0.00 0.00 4.12
283 284 3.556038 TTCTCCTCCCCGAAGCCCA 62.556 63.158 0.00 0.00 0.00 5.36
284 285 2.687566 TTCTCCTCCCCGAAGCCC 60.688 66.667 0.00 0.00 0.00 5.19
285 286 2.736826 CCTTCTCCTCCCCGAAGCC 61.737 68.421 0.00 0.00 36.25 4.35
286 287 2.736826 CCCTTCTCCTCCCCGAAGC 61.737 68.421 0.00 0.00 36.25 3.86
287 288 0.399233 ATCCCTTCTCCTCCCCGAAG 60.399 60.000 0.00 0.00 37.09 3.79
288 289 0.691078 CATCCCTTCTCCTCCCCGAA 60.691 60.000 0.00 0.00 0.00 4.30
289 290 1.075226 CATCCCTTCTCCTCCCCGA 60.075 63.158 0.00 0.00 0.00 5.14
290 291 2.143419 CCATCCCTTCTCCTCCCCG 61.143 68.421 0.00 0.00 0.00 5.73
291 292 2.456443 GCCATCCCTTCTCCTCCCC 61.456 68.421 0.00 0.00 0.00 4.81
292 293 0.990818 AAGCCATCCCTTCTCCTCCC 60.991 60.000 0.00 0.00 0.00 4.30
293 294 0.472044 GAAGCCATCCCTTCTCCTCC 59.528 60.000 0.00 0.00 38.50 4.30
294 295 1.506025 AGAAGCCATCCCTTCTCCTC 58.494 55.000 0.00 0.00 46.40 3.71
295 296 3.748614 AGAAGCCATCCCTTCTCCT 57.251 52.632 0.00 0.00 46.40 3.69
299 300 0.472044 GGAGGAGAAGCCATCCCTTC 59.528 60.000 0.00 0.00 41.15 3.46
300 301 0.045469 AGGAGGAGAAGCCATCCCTT 59.955 55.000 0.00 0.00 40.02 3.95
301 302 0.045469 AAGGAGGAGAAGCCATCCCT 59.955 55.000 0.00 0.00 40.02 4.20
302 303 0.472044 GAAGGAGGAGAAGCCATCCC 59.528 60.000 0.00 0.00 40.02 3.85
303 304 0.472044 GGAAGGAGGAGAAGCCATCC 59.528 60.000 0.00 0.00 40.02 3.51
304 305 1.416030 GAGGAAGGAGGAGAAGCCATC 59.584 57.143 0.00 0.00 40.02 3.51
305 306 1.274069 TGAGGAAGGAGGAGAAGCCAT 60.274 52.381 0.00 0.00 40.02 4.40
306 307 0.117140 TGAGGAAGGAGGAGAAGCCA 59.883 55.000 0.00 0.00 40.02 4.75
307 308 1.280457 TTGAGGAAGGAGGAGAAGCC 58.720 55.000 0.00 0.00 0.00 4.35
308 309 2.238395 ACATTGAGGAAGGAGGAGAAGC 59.762 50.000 0.00 0.00 0.00 3.86
309 310 3.370315 CCACATTGAGGAAGGAGGAGAAG 60.370 52.174 0.00 0.00 0.00 2.85
310 311 2.573462 CCACATTGAGGAAGGAGGAGAA 59.427 50.000 0.00 0.00 0.00 2.87
311 312 2.191400 CCACATTGAGGAAGGAGGAGA 58.809 52.381 0.00 0.00 0.00 3.71
312 313 1.407989 GCCACATTGAGGAAGGAGGAG 60.408 57.143 4.11 0.00 0.00 3.69
313 314 0.620556 GCCACATTGAGGAAGGAGGA 59.379 55.000 4.11 0.00 0.00 3.71
314 315 0.329261 TGCCACATTGAGGAAGGAGG 59.671 55.000 4.11 0.00 0.00 4.30
315 316 1.004044 ACTGCCACATTGAGGAAGGAG 59.996 52.381 12.26 1.48 35.98 3.69
316 317 1.067295 ACTGCCACATTGAGGAAGGA 58.933 50.000 12.26 0.00 35.98 3.36
317 318 2.636830 CTACTGCCACATTGAGGAAGG 58.363 52.381 12.26 0.74 35.98 3.46
318 319 2.026822 ACCTACTGCCACATTGAGGAAG 60.027 50.000 6.58 6.58 37.85 3.46
319 320 1.985159 ACCTACTGCCACATTGAGGAA 59.015 47.619 4.11 0.00 0.00 3.36
320 321 1.656587 ACCTACTGCCACATTGAGGA 58.343 50.000 4.11 0.00 0.00 3.71
321 322 2.086869 CAACCTACTGCCACATTGAGG 58.913 52.381 0.00 0.00 0.00 3.86
322 323 3.057969 TCAACCTACTGCCACATTGAG 57.942 47.619 0.00 0.00 0.00 3.02
323 324 3.609853 GATCAACCTACTGCCACATTGA 58.390 45.455 0.00 0.00 0.00 2.57
324 325 2.684881 GGATCAACCTACTGCCACATTG 59.315 50.000 0.00 0.00 35.41 2.82
325 326 2.680805 CGGATCAACCTACTGCCACATT 60.681 50.000 0.00 0.00 36.31 2.71
326 327 1.134401 CGGATCAACCTACTGCCACAT 60.134 52.381 0.00 0.00 36.31 3.21
327 328 0.249120 CGGATCAACCTACTGCCACA 59.751 55.000 0.00 0.00 36.31 4.17
328 329 0.249398 ACGGATCAACCTACTGCCAC 59.751 55.000 0.00 0.00 36.31 5.01
329 330 0.981183 AACGGATCAACCTACTGCCA 59.019 50.000 0.00 0.00 36.31 4.92
330 331 2.429610 TCTAACGGATCAACCTACTGCC 59.570 50.000 0.00 0.00 36.31 4.85
331 332 3.795623 TCTAACGGATCAACCTACTGC 57.204 47.619 0.00 0.00 36.31 4.40
332 333 5.125739 ACTCTTCTAACGGATCAACCTACTG 59.874 44.000 0.00 0.00 36.31 2.74
333 334 5.125739 CACTCTTCTAACGGATCAACCTACT 59.874 44.000 0.00 0.00 36.31 2.57
334 335 5.341617 CACTCTTCTAACGGATCAACCTAC 58.658 45.833 0.00 0.00 36.31 3.18
335 336 4.401519 CCACTCTTCTAACGGATCAACCTA 59.598 45.833 0.00 0.00 36.31 3.08
336 337 3.195825 CCACTCTTCTAACGGATCAACCT 59.804 47.826 0.00 0.00 36.31 3.50
337 338 3.194968 TCCACTCTTCTAACGGATCAACC 59.805 47.826 0.00 0.00 0.00 3.77
338 339 4.082136 ACTCCACTCTTCTAACGGATCAAC 60.082 45.833 0.00 0.00 0.00 3.18
339 340 4.087182 ACTCCACTCTTCTAACGGATCAA 58.913 43.478 0.00 0.00 0.00 2.57
340 341 3.698289 ACTCCACTCTTCTAACGGATCA 58.302 45.455 0.00 0.00 0.00 2.92
341 342 4.722361 AACTCCACTCTTCTAACGGATC 57.278 45.455 0.00 0.00 0.00 3.36
342 343 4.380655 CGAAACTCCACTCTTCTAACGGAT 60.381 45.833 0.00 0.00 0.00 4.18
343 344 3.057736 CGAAACTCCACTCTTCTAACGGA 60.058 47.826 0.00 0.00 0.00 4.69
344 345 3.243336 CGAAACTCCACTCTTCTAACGG 58.757 50.000 0.00 0.00 0.00 4.44
345 346 3.669122 CACGAAACTCCACTCTTCTAACG 59.331 47.826 0.00 0.00 0.00 3.18
346 347 4.618965 ACACGAAACTCCACTCTTCTAAC 58.381 43.478 0.00 0.00 0.00 2.34
347 348 4.931661 ACACGAAACTCCACTCTTCTAA 57.068 40.909 0.00 0.00 0.00 2.10
348 349 4.340097 TCAACACGAAACTCCACTCTTCTA 59.660 41.667 0.00 0.00 0.00 2.10
349 350 3.132289 TCAACACGAAACTCCACTCTTCT 59.868 43.478 0.00 0.00 0.00 2.85
350 351 3.454375 TCAACACGAAACTCCACTCTTC 58.546 45.455 0.00 0.00 0.00 2.87
351 352 3.458189 CTCAACACGAAACTCCACTCTT 58.542 45.455 0.00 0.00 0.00 2.85
352 353 2.224066 CCTCAACACGAAACTCCACTCT 60.224 50.000 0.00 0.00 0.00 3.24
353 354 2.135933 CCTCAACACGAAACTCCACTC 58.864 52.381 0.00 0.00 0.00 3.51
354 355 1.202651 CCCTCAACACGAAACTCCACT 60.203 52.381 0.00 0.00 0.00 4.00
355 356 1.226746 CCCTCAACACGAAACTCCAC 58.773 55.000 0.00 0.00 0.00 4.02
356 357 0.107831 CCCCTCAACACGAAACTCCA 59.892 55.000 0.00 0.00 0.00 3.86
357 358 0.395312 TCCCCTCAACACGAAACTCC 59.605 55.000 0.00 0.00 0.00 3.85
358 359 1.070289 ACTCCCCTCAACACGAAACTC 59.930 52.381 0.00 0.00 0.00 3.01
359 360 1.129058 ACTCCCCTCAACACGAAACT 58.871 50.000 0.00 0.00 0.00 2.66
360 361 1.226746 CACTCCCCTCAACACGAAAC 58.773 55.000 0.00 0.00 0.00 2.78
361 362 0.834612 ACACTCCCCTCAACACGAAA 59.165 50.000 0.00 0.00 0.00 3.46
362 363 0.105964 CACACTCCCCTCAACACGAA 59.894 55.000 0.00 0.00 0.00 3.85
363 364 1.046472 ACACACTCCCCTCAACACGA 61.046 55.000 0.00 0.00 0.00 4.35
364 365 0.179056 AACACACTCCCCTCAACACG 60.179 55.000 0.00 0.00 0.00 4.49
365 366 1.594331 GAACACACTCCCCTCAACAC 58.406 55.000 0.00 0.00 0.00 3.32
366 367 0.472471 GGAACACACTCCCCTCAACA 59.528 55.000 0.00 0.00 0.00 3.33
367 368 0.765510 AGGAACACACTCCCCTCAAC 59.234 55.000 0.00 0.00 35.95 3.18
368 369 1.518367 AAGGAACACACTCCCCTCAA 58.482 50.000 0.00 0.00 35.95 3.02
369 370 1.518367 AAAGGAACACACTCCCCTCA 58.482 50.000 0.00 0.00 35.95 3.86
370 371 2.658807 AAAAGGAACACACTCCCCTC 57.341 50.000 0.00 0.00 35.95 4.30
394 395 5.189928 TCACCAAGTCTTGCTACAGAAAAA 58.810 37.500 7.09 0.00 0.00 1.94
395 396 4.776349 TCACCAAGTCTTGCTACAGAAAA 58.224 39.130 7.09 0.00 0.00 2.29
396 397 4.415881 TCACCAAGTCTTGCTACAGAAA 57.584 40.909 7.09 0.00 0.00 2.52
397 398 4.623932 ATCACCAAGTCTTGCTACAGAA 57.376 40.909 7.09 0.00 0.00 3.02
398 399 4.623932 AATCACCAAGTCTTGCTACAGA 57.376 40.909 7.09 0.93 0.00 3.41
399 400 5.695851 AAAATCACCAAGTCTTGCTACAG 57.304 39.130 7.09 0.00 0.00 2.74
400 401 5.359576 ACAAAAATCACCAAGTCTTGCTACA 59.640 36.000 7.09 0.00 0.00 2.74
401 402 5.831997 ACAAAAATCACCAAGTCTTGCTAC 58.168 37.500 7.09 0.00 0.00 3.58
402 403 6.463995 AACAAAAATCACCAAGTCTTGCTA 57.536 33.333 7.09 0.00 0.00 3.49
403 404 5.343307 AACAAAAATCACCAAGTCTTGCT 57.657 34.783 7.09 0.00 0.00 3.91
404 405 7.307337 CCATTAACAAAAATCACCAAGTCTTGC 60.307 37.037 7.09 0.00 0.00 4.01
405 406 7.925483 TCCATTAACAAAAATCACCAAGTCTTG 59.075 33.333 5.53 5.53 0.00 3.02
406 407 8.017418 TCCATTAACAAAAATCACCAAGTCTT 57.983 30.769 0.00 0.00 0.00 3.01
407 408 7.595819 TCCATTAACAAAAATCACCAAGTCT 57.404 32.000 0.00 0.00 0.00 3.24
408 409 8.655651 TTTCCATTAACAAAAATCACCAAGTC 57.344 30.769 0.00 0.00 0.00 3.01
409 410 9.271828 GATTTCCATTAACAAAAATCACCAAGT 57.728 29.630 10.90 0.00 37.81 3.16
410 411 8.434661 CGATTTCCATTAACAAAAATCACCAAG 58.565 33.333 14.02 0.00 37.77 3.61
411 412 7.386299 CCGATTTCCATTAACAAAAATCACCAA 59.614 33.333 14.02 0.00 37.77 3.67
412 413 6.870965 CCGATTTCCATTAACAAAAATCACCA 59.129 34.615 14.02 0.00 37.77 4.17
413 414 7.093992 TCCGATTTCCATTAACAAAAATCACC 58.906 34.615 14.02 0.00 37.77 4.02
414 415 8.026607 TCTCCGATTTCCATTAACAAAAATCAC 58.973 33.333 14.02 0.00 37.77 3.06
415 416 8.116651 TCTCCGATTTCCATTAACAAAAATCA 57.883 30.769 14.02 1.60 37.77 2.57
416 417 8.458843 TCTCTCCGATTTCCATTAACAAAAATC 58.541 33.333 7.64 7.64 35.67 2.17
417 418 8.348285 TCTCTCCGATTTCCATTAACAAAAAT 57.652 30.769 0.00 0.00 0.00 1.82
418 419 7.447238 ACTCTCTCCGATTTCCATTAACAAAAA 59.553 33.333 0.00 0.00 0.00 1.94
419 420 6.940298 ACTCTCTCCGATTTCCATTAACAAAA 59.060 34.615 0.00 0.00 0.00 2.44
420 421 6.371548 CACTCTCTCCGATTTCCATTAACAAA 59.628 38.462 0.00 0.00 0.00 2.83
421 422 5.874810 CACTCTCTCCGATTTCCATTAACAA 59.125 40.000 0.00 0.00 0.00 2.83
422 423 5.419542 CACTCTCTCCGATTTCCATTAACA 58.580 41.667 0.00 0.00 0.00 2.41
423 424 4.271291 GCACTCTCTCCGATTTCCATTAAC 59.729 45.833 0.00 0.00 0.00 2.01
424 425 4.162320 AGCACTCTCTCCGATTTCCATTAA 59.838 41.667 0.00 0.00 0.00 1.40
425 426 3.706594 AGCACTCTCTCCGATTTCCATTA 59.293 43.478 0.00 0.00 0.00 1.90
426 427 2.503356 AGCACTCTCTCCGATTTCCATT 59.497 45.455 0.00 0.00 0.00 3.16
427 428 2.102252 GAGCACTCTCTCCGATTTCCAT 59.898 50.000 0.00 0.00 36.42 3.41
428 429 1.478510 GAGCACTCTCTCCGATTTCCA 59.521 52.381 0.00 0.00 36.42 3.53
429 430 1.754226 AGAGCACTCTCTCCGATTTCC 59.246 52.381 0.00 0.00 46.32 3.13
469 470 5.776744 CACGGTAGTGGACTAGTAGTTTTT 58.223 41.667 3.85 0.00 44.34 1.94
470 471 5.382618 CACGGTAGTGGACTAGTAGTTTT 57.617 43.478 3.85 0.00 44.34 2.43
542 543 9.658799 CCTATACAAGAAGACTTTTTCAGATGA 57.341 33.333 0.00 0.00 33.70 2.92
570 572 3.555956 CACACAGGAACGGAGCAATATAC 59.444 47.826 0.00 0.00 0.00 1.47
574 576 1.237285 GCACACAGGAACGGAGCAAT 61.237 55.000 0.00 0.00 0.00 3.56
606 608 0.035458 CGACCAAAAGCTCTCCAGGT 59.965 55.000 0.00 0.00 0.00 4.00
614 619 2.597510 GCCACCCGACCAAAAGCT 60.598 61.111 0.00 0.00 0.00 3.74
654 659 0.392193 CATCGCTTGCTGGTTCTCCT 60.392 55.000 0.00 0.00 34.23 3.69
655 660 0.391661 TCATCGCTTGCTGGTTCTCC 60.392 55.000 0.00 0.00 0.00 3.71
657 662 1.016130 CGTCATCGCTTGCTGGTTCT 61.016 55.000 0.00 0.00 0.00 3.01
658 663 1.291877 ACGTCATCGCTTGCTGGTTC 61.292 55.000 0.00 0.00 41.18 3.62
786 793 0.953727 TTAGTGCGTGTACGTGTCCT 59.046 50.000 0.00 0.52 42.22 3.85
787 794 1.769733 TTTAGTGCGTGTACGTGTCC 58.230 50.000 0.00 0.00 42.22 4.02
792 799 1.518102 ACGTGTTTTAGTGCGTGTACG 59.482 47.619 0.00 0.00 43.27 3.67
793 800 2.791004 AGACGTGTTTTAGTGCGTGTAC 59.209 45.455 0.00 0.00 37.71 2.90
921 983 4.673580 GCTTCTGCGTCATCAATCATGTTT 60.674 41.667 0.00 0.00 33.66 2.83
952 1014 4.219507 CGTCCTGCTGGAATATCATAGACT 59.780 45.833 14.68 0.00 45.18 3.24
954 1016 4.021981 CACGTCCTGCTGGAATATCATAGA 60.022 45.833 14.68 0.00 45.18 1.98
955 1017 4.240888 CACGTCCTGCTGGAATATCATAG 58.759 47.826 14.68 1.80 45.18 2.23
956 1018 3.554960 GCACGTCCTGCTGGAATATCATA 60.555 47.826 14.68 0.00 45.18 2.15
959 1021 1.221414 GCACGTCCTGCTGGAATATC 58.779 55.000 14.68 0.80 45.18 1.63
960 1022 3.386543 GCACGTCCTGCTGGAATAT 57.613 52.632 14.68 0.00 45.18 1.28
961 1023 4.932789 GCACGTCCTGCTGGAATA 57.067 55.556 14.68 0.00 45.18 1.75
969 1031 0.928229 GGCGTATTTAGCACGTCCTG 59.072 55.000 0.00 0.00 41.41 3.86
970 1032 0.533491 TGGCGTATTTAGCACGTCCT 59.467 50.000 0.00 0.00 43.15 3.85
971 1033 0.648958 GTGGCGTATTTAGCACGTCC 59.351 55.000 0.00 0.13 43.15 4.79
972 1034 0.296642 CGTGGCGTATTTAGCACGTC 59.703 55.000 0.00 0.00 44.03 4.34
973 1035 0.388907 ACGTGGCGTATTTAGCACGT 60.389 50.000 0.00 0.00 42.55 4.49
974 1036 0.024491 CACGTGGCGTATTTAGCACG 59.976 55.000 7.95 0.00 38.32 5.34
975 1037 0.372334 CCACGTGGCGTATTTAGCAC 59.628 55.000 24.02 0.00 38.32 4.40
976 1038 0.037139 ACCACGTGGCGTATTTAGCA 60.037 50.000 34.26 0.00 38.32 3.49
977 1039 0.372334 CACCACGTGGCGTATTTAGC 59.628 55.000 34.26 0.00 38.32 3.09
978 1040 1.717194 ACACCACGTGGCGTATTTAG 58.283 50.000 34.26 15.33 38.32 1.85
979 1041 1.799403 CAACACCACGTGGCGTATTTA 59.201 47.619 34.26 0.00 38.32 1.40
980 1042 0.589223 CAACACCACGTGGCGTATTT 59.411 50.000 34.26 13.59 38.32 1.40
981 1043 0.249953 TCAACACCACGTGGCGTATT 60.250 50.000 34.26 19.40 38.32 1.89
1104 1169 6.304624 AGGATGTTGTCGGATACATAGTAGA 58.695 40.000 8.20 0.00 38.10 2.59
1119 1184 6.491714 ACAATATCAGCTCTAGGATGTTGT 57.508 37.500 16.30 16.30 45.19 3.32
1317 1382 7.508687 TGCAAGCAGTATAAATAATCTCTCCA 58.491 34.615 0.00 0.00 0.00 3.86
1360 1425 3.518303 AGTTCCGCCTCTAAACCATTAGT 59.482 43.478 0.00 0.00 39.65 2.24
1410 1475 0.907704 ACTCAATACGGTGGAGGGCA 60.908 55.000 9.89 0.00 32.98 5.36
1424 1489 3.145286 TCAATGACAATCGGCAACTCAA 58.855 40.909 0.00 0.00 0.00 3.02
1450 1515 1.674817 CGACACCGCCTCCAAACTATT 60.675 52.381 0.00 0.00 0.00 1.73
1484 1549 3.060020 TTCGAGCGATCCACGGACC 62.060 63.158 0.00 0.00 42.83 4.46
1569 1634 6.531594 CAGTGTTTTGAGAGCGACTAATATGA 59.468 38.462 0.00 0.00 0.00 2.15
1666 1731 8.121305 TCAGCCATACAAAGATTTACAATGTT 57.879 30.769 0.00 0.00 0.00 2.71
1745 1811 3.086600 CTCCCTCCCTGTCCCTGC 61.087 72.222 0.00 0.00 0.00 4.85
1793 1859 2.912542 CCTATCCGCTGCCCTCGA 60.913 66.667 0.00 0.00 0.00 4.04
1991 2070 2.226225 CGTCGCGATTTACCCGTCC 61.226 63.158 14.06 0.00 0.00 4.79
2167 2246 3.316573 CTCCTTGACGGCCACCTCC 62.317 68.421 2.24 0.00 0.00 4.30
2281 2360 1.685180 CCTACCCTGATGGAGTCGTGA 60.685 57.143 0.00 0.00 38.00 4.35
2322 2401 2.444351 GCAATTGCGCAAGATACAGAC 58.556 47.619 28.62 7.82 43.02 3.51
2384 2478 6.049955 TGGGCATATCAGGCTAATACTAAC 57.950 41.667 0.00 0.00 0.00 2.34
2406 2502 0.465097 ATCAGCGGCTCCCAATTCTG 60.465 55.000 0.00 0.00 0.00 3.02
2437 2533 2.817258 AGCATTCCGAACCAAATCGAAA 59.183 40.909 0.00 0.00 45.48 3.46
2450 2546 1.001597 GTCTACCTACCGAGCATTCCG 60.002 57.143 0.00 0.00 0.00 4.30
2492 2588 1.210722 GAGAGGGGGACATCAAGTTCC 59.789 57.143 0.00 0.00 45.49 3.62
2560 2660 9.618890 TTCTTCTGGAATCTATGTGGATAAAAG 57.381 33.333 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.