>input_sequence_71220
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-----------------------ATGACCATGTGGCGTATTTGGCACGTCCGTAACGAGATAACTCATCAGAAGAATCCG
CC-CCCTACAGAAGCCTCTTGCAGATTTCTCCATGGGTATATTAATTCTCTACTATGTATCCGACAACATCCTAGAGCTG
ATATTGTTAAAGGCAAAATGGTGGTGCATTTGGGAAGGTCGGCTGCTACACAAATTAAACATAGTGGTGAGGAGAAGCGA
TGGATGCCACCAGCAGTTGGCTTGGCCAAGCTGAACATGGACGGGAGCTACGTCCCAGCTACAGGAGCTGCTGGCGGAGG
TATGGTGCTGCGTGGCGCTGCTGGAGAGATTATTTATACTGCTTGCAGGCAATTACGTACATGCACTAATGGTTTAGAGG
CGGAACTAGCTGCGTGCAGTGAAGGGCTGGCTCTTGCCCTCCACCGTATTGAGTTGCCGATTGTCATTGAGATGAATAGT
TTGGAGGCGGTGTCGATGCTTAACTCGCGGTCCGTGGATCGCTCGAACCATCGTGTACTCGTACAAGAGATTCTTGGGTT
AATTGCAGCTGACCCTCGAAAGATTTCTATTAGTCATATTAGTCGCTCTCAAAACACTGTTAGTCATGCTCTTGCCGCTT
ATGGTCGTAGTACCCCTCGCACCGCCGTGTGGTTGGGATCTGGCTTGCACAACATTGTAAATCTTTGTATGGCTGAACGG
CCTCCTTGA-----------------------------------------------------------------------
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----
>chr4B_1_TraesCS4B01G210500
AAAGCAGCGTATGGGTGGCGCCTGAAGACTGGGAGGATCGAAGGGTAACTGAAGCCCTCCCTGCTGTGATGGAAAAATCT
TGGCTCCTGCCTTTTCATGCTGGCTTCGCTTCATTTTGCTGATGTTCAGACTAAGTGGATGACCCTGTAATATTGTGTCT
GCTATAAAATGGTAGTTTCTCTTTGTAGCCTCTGTTCTTATAACAGAGTCTGTTGCCGCTCTGGGGCTGGATTCTTCTGA
ATCTAGACCTTGAACCATTCTTGTAGGTTCTCTCCACTGTCTTTGGGCTTCGGGGAGGAGAAGGGATGGCTTCTCCTCCT
TCCTCAATGTGGCAGTAGGTTGATCCGTTAGAAGAGTGGAGTTTCGTGTTGAGGGGAGTGTGTTCCTTTTTTCTTTTTTC
TGTAGCAAGACTTGGTGATTTTTGTTAATGGAAATCGGAGAGAGTGCTCTCTTTTATCAAAAAAAAGAAAAAAACTACTA
GTCCACTACCGTGTAAAGCCGGCTTGTGTTTCGCAACAATTCTATATGCTGCTGCTCTTGGCTCATCTGAAAAA-GTCTT
CTTGTATAGGAGTATATTGCTCCGTTCCTGTGTGCCACTTGTTATAAACCTGGAG---AGCTTTTGGTCGGGTGGCCTAC
GTGCCGAGCAGCTGTAGCAGGAG--AACCAGCAAGCGATGACGTGAGGCGTCGTGTTTGCTTCCTGGTAGCAATTGACCC
CCGCTCGACGCATCATCCGTCCGGTATACATATCTCCGTCCACCTCACACGATTCCGACCAAATTCATAGTCAGGACACG
TACACGCACTAAAACACGTCTACATACATCTGATTAAAAA---TATTTATTTT---------------------------
------------------ACCGTAAAACATCTTATAATTCGGAATAGAGGGAGGACTTTTTTTAATTAGAGAAAAAGAAA
CAAAAT-------TAGTATAGCAAACATGATTGATGACGCAGAAGCGGATATAAGTCTATGATATTCCAGCAGGACGTGC
TAAATACGCCA--CGTGGTGTTGATGACCATGTGGCGTATTTGGCACGTCCGTAACGAGATAACTCATCAGAAGAATCCG
CC-CCCTACAGAAGCCTCTTGCAGATTTCTCCATGGGTATATTAATTCTCTACTATGTATCCGACAACATCCTAGAGCTG
ATATTGTTAAAGGCAAAATGGTGGTGCATTTGGGAAGGTCGGCTGCTACACAAATTAAACATAGTGGTGAGGAGAAGCGA
TGGATGCCACCAGCAGTTGGCTTGGCCAAGCTGAACATGGACGGGAGCTACGTCCCAGCTACAGGAGCTGCTGGCGGAGG
TATGGTGCTGCGTGGCGCTGCTGGAGAGATTATTTATACTGCTTGCAGGCAATTACGTACATGCACTAATGGTTTAGAGG
CGGAACTAGCTGCGTGCAGTGAAGGGCTGGCTCTTGCCCTCCACCGTATTGAGTTGCCGATTGTCATTGAGATGAATAGT
TTGGAGGCGGTGTCGATGCTTAACTCGCGGTCCGTGGATCGCTCGAACCATCGTGTACTCGTACAAGAGATTCTTGGGTT
AATTGCAGCTGACCCTCGAAAGATTTCTATTAGTCATATTAGTCGCTCTCAAAACACTGTTAGTCATGCTCTTGCCGCTT
ATGGTCGTAGTACCCCTCGCACCGCCGTGTGGTTGGGATCTGGCTTGCACAACATTGTAAATCTTTGTATGGCTGAACGG
CCTCCTTGAGTAATGAAATTCCTTTTT-ACCCGGCAAAAAAAATATTCCAGCAGGGACAGGGAGGGAGGGAGAATCTTGC
AAAAGACTGGGGAATCTGTCGAGGGCAGCGGATAGGGATAACCATTAAAACCACGCACGCCGCCGAGTGAACAAGTCCTT
CTCATTTTCTTTTTCCTCTTCTCTGCTCCGTCTTCCCGTTGTTGTT------CCGCAGCAACACCAAC------ACCAAC
ACGGTTGCTTCTCCCCCAGCGGCGGAAGGAATCTCGAGT-CTCTCCTCCCCCGGCGCCGGGCGGGACCTGGACGGGTAAA
TCGCGACGGCGCCCTAGAACCCCCGAGCAGCCGGGCGATGGAGGACCGCGGCGGCGGGGGCGGGGGCGCGGGCGGGCGGC
GGGTGGGGGACTACGTGCTGCTGCGCCCGATCGGGTCGGGGGCCTACTCGCAGGTCTGGCTGGGGAAGCACGTCGCCCGG
GGCACGGAGGTGGCCGTCAAGGAGATCGCCATGGACCGCCTCAGCGCCAAGCTCCGCGACAGCCTCCTCTCCGAGGTCGA
CATCCTCCGCCGCATCACGCACCCCAACATCATCGCGCTTCACGACTCCATCAGGGTAGGGTACCCTCCCTCCTCTCTCT
GT----CTGTATCTTGCGCAATTGCTCTCGATCTGTTACTT-----------TTTTTTATGTCATTGTCTGCTGTCTGTT
AGTATTAGCCTG--ATATGCCCAGAATTGGGAGCCGCTGATGACGATCTCTATTTCGATTTGGTTCGGAATGCTCGGTAG
GTAGACAACCCAAGCAAATGATAGGTTGGAACTTGATG--TCCCCCTCTCCTAGTACTATCTACATAGATTCAGCA--AA
AATTTGAAAACTATTTTAGCTTTTATCCACATAGATTCCAGAAGAATAACTGTTTCTCATTATTGATTATGAAGTGATAT
ATGTCTTGTGTATGTCTTTCAGGATGGTGGGAGGATATATCTCATATTGGAGTATTGTCGAGGTGGTGACTTGTACGCGT
ATCT
>chr4A_477
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----------------------------------------------------------------------------ACTA
CTCCACTACCGTGTAAAGCCGGCTTGTGTTTCGCAACAATTCTATGTGCTCCTGCTCTTGGCCCATCTGAAAAA-GTCTT
CTTGTAT--GAATATGTTGCTCCGTTCCTGTGTGCCACTTGTTAAAA-CCTGGAG---TGCTTTTGGTCGGGTGGCCTAC
GTGCCGAGCAGCAGGAGC----ACCAACCAGCAAGCGATGACGTGAGGCGTCGTGTTTGCTTCCTGGCAGCAATTGACCC
CCGCTCGACGCATCATCCGTCCGGTATACACATCTCCGTCCACCTCACACGATTCCGACCAAATTCATAGCCGAGACATA
TACACGCACTAAAACGTGTCTATATACATCTCATTAAATTTTTATACAATAATAAAACATCTTTTGGGGTTACAGTACAA
CATTTTTTTTAAAGGGTTACAGTAAAACATCTTATAATTCGAAATAGAGGGAGTACTTTTT------AGAGGAAAACAAA
CAAAATACAATAGTAGTATAGC-AACATGATTGATGACGCAGAAGCGGAGATATGATATTCC------------------
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---------------------------------------------------------------GGGAGGGAGAATCTTGC
AAAAGACTGGGGAATCTGGCGAGGGCAGCGGATAGGGATAACCATTAAAACCACGCACGCCGCCGAGTGAACAAGTCCTT
GTCATTTTCTTTTTCCTCTTCTCTGCTCCGTCTTCCCGTTG---TTCCGCTCCCGCAGCAACACCAAC------ACCAAC
ACGGTTGCTTCTCCCCCAGCGGCGGAAGGAATCTCGAGCCCCCTCCTCCCCCGGCGCCGGGCGGGGCCTCGACGGGTAAA
TCGCGACGGCGCCCTAGAACCCCCGAGCAGCCGGGCGATGGAGGACCGCGGCGGCGGCGGCGGGGGCGGGGGCGCGCGGC
GGGTGGGGGACTACGTGCTGCTGCGCCCGATCGGGTCGGGGGCCTACTCGCAGGTCTGGCTGGGGAAGCACGTCGCGCGG
GGCACCGAGGTGGCCGTCAAGGAGATCGCCATGGACCGCCTCAGCGCGAAGCTCCGCGACAGCCTCCTCTCCGAGGTCGA
CATCCTCCGCCGCATCACGCATCCCAACATCATCGCGCTCCACGACTCCATCAGGGTAGGGTACCCTCCCTCCTCTCTCT
CTCTGCCTGTCTCTCGCGCAATTGCTTTCGATCTGTTAGTTTTATTTATTTGTTTTTTATGTCATTGTCTGCTGTCTATT
AGTATTAGCCTGATATATGCCTAGAATTGGGAGCCGCTGATGACGATCTCTAGTTCGATTTGGTTTGGAATGCTCGGTAG
GTAGACAACC-AAGCAAATGATAGTTTTGAACTTGATGTCTCCCCCTCTCCTAGTACTATCCACATAGATTCAGCA--AT
TTTTTC--AACTATTTTAGTTTTTATCCACATAGGTTCCAGAAGAATAACTGTTTTTCTTTATTGATTATGAAGTGATAT
ATGTCTTGTGTATGTCTTTCAGGATGGTGGGAGGATATATCTCATATTGGAGTATTGTCGAGGTGGTGACTTATACGCCT
ATCT
>chr4D_477
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----------------------------------------------------------------------------ACTA
CTCCACTACCGTGTAAAGCCAGCTTGTGTTTCGCAACAATTCTATGTGCTGCTGCTCTTGGCCCATCTGAAAAAAGTCTT
GTTGTAT--GTATATGTTGCTCCGTTCCTGTGTGCCACTTGTTAGAA-CCTGGAGTGCTGCTTTTGGCCGGGTGGCCTAC
GTGCCGAGCAGCAGGAGCGAGCACCAACCAGCAAGCGATGACGTGAGGCGTCGTGTTTGCTTCCTGGTAGCAATTGACCC
CCGCTCGACGCATCATCCATCCGATATGCATATCTCTGTCCACCTCACACGATTCCGACCAAATTCCTAGTCGAGACATA
TACACGCATTAAAACGCGTCTATATACATCTGGTTAAAAATAATATTTATTTC---------------------------
------------------ACAGTAAAACATCTTATAATTCGAAATAGAGGGAGTG--TTTTTTTGTTAGAGAAAAACAAA
CCAAAT-------TAGTATAGC-AACATGATTGATGACGCAGAAGCGGATATATGATGAT--------------------
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------------------------------------------ATATTCCATCAGGGACAGGGAGGGAGAGAGAATCTTGC
AAAAGACGGGGGAATCTGGCGAGGGCAGCGGATAGGGATAACCATTAAAACCACGCACGCCGCCGAGTGAACAAGTCCTT
CTCATTTTCTTTTTCCTCTTCTCTGCTCCGTCTTCCCGTTGTTGTTCCGCTCCCGCAGCAACACCAACGCCAACACCAAC
ACGGTTGCTTCTCCCCCAGCGGCGGAAGGAATCTCGGGT-CCCTCCTCCCCCGGCGCCGGGCGGGACCTCGACGGGTAAA
TCGCGACGGCGCCCTAGAACCCCCGAGCAGCCGGGCGATGGAGGACCGCGGCGGCGGGGGCGGGGGCGCGGGCGGGCGGC
GGGTGGGGGACTACGTGCTGCTGCGCCCGATCGGGTCGGGGGCCTACTCACAGGTCTGGCTGGGGAAGCACGTCGCGCGG
GGCACCGAGGTGGCCGTCAAGGAGATCGCCATGGACCGCCTCAGCGCCAAGCTCCGCGACAGCCTCCTCTCCGAGGTCGA
CATCCTCCGCCGCATCACGCACCCCAACATCATCGCGCTCCACGATTCCATCAGGGTAGGGTACCCTCCCTCCTCTCTCT
CTCTGCCTGTCTCACGCGCAATTGCTTTCGATCTGTTACTTTTTGTTTTTGTTTTTTTATGTCATTGTCTGCTGTCTATT
AGTATTAGCCTG--ATATGCCTAGATTTGGGAGCCGCTGATGACGATCTCTAGTTCGATTTGGTTTGGAATGCTCTGTAG
GTAGACAACCCAAGCAAATGATAGGTTAGAACTTGATGTCTCCCCCTCTCCTAGTACTATCCACATAGATTCAGCAATAT
TTTTTT--AACTATTTTAGTTTTTATCCACATAGATTCCAGAAGAATAACTGTTTTTCCTTACTAC----GAAGTGATAT
ATGTCTTGT--ATGTCTCTTAGGATGGCGGGAGGATATATCTCATATTGGAGTATTGTCGAGGTGGTGACTTGTACGCGT
ATCT
>chr3B_983
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---ATACGCCACGCGTGGTGTTGATGACCATGTGGCGTATTTGGCACGTCCGTAACGAGATAACTCGTCAGAAGAATCCG
CC-CCCTACAGAGGCCTCCTGCAGATTTCTCCATGGATATATTAATTCCCTGCTATATAACCGGCAACAGCCTAGAGCTG
ATATTGTTAAAGGCAAAACGGTGGTGTAGTTGGAAAGGTCGGCTACTACATAAATTAAATATAGTGGTGAGAAGAAGCGA
TGGATGCCACCAGCAGTTGGCCTGGCCAAGCTGAACACGGACGGGAGCTACATCCCGGCTACAGGAGCTGCTGGCGGAGG
TATGGTGCTGCGCGGTGCTACCAGAGAGATTATTT----------------ATTACATACATGCGCTAATGGTTTAGAGG
CGGAACTAGCTGCGTGCAGTGAAGGGCTGGCTCTCGTCCTCCACCGTACTGAGTTGCCGATTGTCATTGAGATGGATAGT
TTGGAGGCGGTGTCGATGCTTAACTCGCCGTCCGTGGATTTCTCAAACCATCGTGTACTGGTGCAAGAGATTCTTGGGTT
AATTGCAGATGACCCTCGGAAGATTTTTATTAGCCATATTAGTCGCTCTCAAAACACTGTTAGTCATGCCCTTGCCGCTT
ATGGTCGTAGTACCCCTCGCACCGCCGTGTAGTTGGGATCTGGCTTGCACGACATTGTAAATCTTTGTATGGCTCAACAG
CCTCCTTGAGTAATGAAATTCCTTTTTTACCCCACAAAAAAAAT------------------------------------
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>chr1A_992
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--------------GTGGTGTTGATGACCATGTGGCGTATTTGGCACGTCCGTAACGAGATAACTCATCAGAAGAATCCG
CC-CCCTACATAGGCCTCCTGCAGATTTCTCCATGGGTATATTAATTCCCTGCTGTGTATCCGGCAACATCCTAGAGCTG
ATATTGTTAAAGGCAAAACGGTGGTGAATTTGGGATGGTCGGCTGCTACACAAATTAAACATAGTGGTGAGGAGAAGCGA
TGGATGCCACCAGAAGTTGGCTTGGCCAAGATGAACACGGACGGGAGCTACATCCCGGCTACAGGAGCTGCTGGTGGAGG
TACGGTGCTGCATGGCGCTGCCGGAGAGATTATTTATGCTGCTTGCAGGCCATTACGTACATGTGCTAATGGTTTAGAGG
CGGAACTAGCTGCGTGCAGTGAAGGGCTAGCTCTCGCCCTCCACCGTACTAAGTTGCCGATTGTCATTGAGATGGATAGT
TTGGAGGCAGTGTCGATGCTTAACTCGCCATCCGTGGATCGCTCGAACCATCGTGTACTGGTGCAAGAAATTCTTGGGTT
AATTGCAGATGACCCTCGGAAGATTTCTATTAGCCATATTAGTCGCACTCAAAACACTGTTAGTCATGCTCTTGCCGCTT
ATGGTCGTAGTACCCCTCGCACCGCCTTGTGGTTG---------------------------------------------
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>chrUn_992
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--------------GTGGTGTTGATGACCATATGGCGTATTTGGCACACCCGTAACGAGATAACTCATCAGAAGAATCCG
CCTCCCTACAGAGGCCTCCTGTAGATTTATTCATGGGTATATTAATTCCCTGCTATGTATCCGGCAACATCCTAGAGGTG
ATATTGTTAAAGGCAAAACGGTGATGCATTTGGAAAGGTCGGCTGCTACACAAATTAAACGCAGTGGTGAGGAGAAGCGA
TGGATGCCACCAGCAGTTGGCTTGGCCAAGCTGAACACAGACGGGAGCTACATCCCGGCTGCAGGAGCTGCTGGCGGAGG
TATGGTGCTGCGCGGCGCTACCGGAGAGATTATTTATACTGCTTGCAGGCAATTACGTACATGCGCTAATGGTTTAGAGG
CGAAACTAGCTGTGTGCAGGGAAGGGCTGGCTCTCGCCCTCCACCGTACTGAGTTGCCGATTGTCATTGAGATGGATAGT
TTGGAGGCGGTGTCAATGCTTAACTCGCCGTTCGTGCATCGCTCGAACCATCGTGTACTGGTGCAAGAGATTCTTGGGTT
AATTGCAGATGACCCTCGGAAGATTTCTATTAGCCATATTAGTCGCTCTCAAAACATTGTTAGTCATGCT----------
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>chr1A_995
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-----------------GTGTTGATGACCATGTGGAGTATTTGGCACGTCCGTAACGAGATAACTCATCAGAAGAATCCG
CC-CCCTACAGAGGCCTCCTGCAGATTTCTCCATGGGCATATTAATTCCCTACTATGTATCTGGCAACATCCTAGAGCTG
ATATTGTTAAAGGAAAAATGGTAGTGCATTTGGGAAGGTCGGCTGCTACACAAATTAAACATAGTGGTGAGGAGAAGCGA
TGGATGCCACCAGCAGTTGGCTTGGCCAAGCTGAACACAGACAGGAGCTACATCCTAGCTACAGGAGCTGCTGGCGGAGG
TATGGTGCTGCGTGGCGCTGCCGGAGAGATTATTTATACTGCTTGCAGGCAATTACGTACATGCGCTAATGATTTAGAGG
CGGAACTAGCTGCGTGCAGTGAAGGGCTGGCTCTCGCCCTCCATCATACTGAGTTGCCGATTGTCATTGAGATGGATAGT
TTGGAGGCGGTGTAGATGCTTAACTCGCCGTCTGTGGATCGCTCGAACCATCGTGTACTGGGGCAAGAGATTCTTGTGTT
AATTGCAGCTGACCCTCGGAAGATTTCTATTAGCCATATTAGTCGCTCTCAAAACACTGTTAGTTATGCTCTTGCCGCTT
ATGGTTGTAGTACCCCTCGCACCGCCGTGTGGTTGGGATCTGGCTTGCACGACATTGTAAATCTTTGTATGGCTGAACGG
CCTCCTTGAGTAATGAAATTCTTTTTTTACCCCGCAAAAAA---------------------------------------
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----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
S--------------------------------------------S----------------S-----------------
-------SS--S---S----------------------------S--S----------S---------------------
------------S-S---SS-SS---------------------------------------------------------
------------------------------------------------------------------------SS----SS
---------------S------S---------------------------------------------------------
--------------------S--------------------S-----------S---------SS-----------S---
----------------------S------------------------------S-SSS--SSSSSSSSSSSSSSSSSSSS
SSS-----------------------------------------------------------------------------
------------S-----S-----------------------------S--------------S----------------
--------------------------------------------------------------------------------
-------------------------------------S-------------S----------------------------
---------------------S------------------------------------------S---------------
----------------------------------S-------------S-------------------------S-----
----------------------------S------------------------------S--S-----------------
------------------S--------------S----------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------S-----------------S-----------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S---------------------------S----------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-----S--------------------------------------------------------------------------
---------------------------------------S----------------------------------------
S---------S---S-----------S--------------------------------------------------S--
---------------------S------------------------------S------------S--------------
---------------------------S---------------------------------S-----------------S
SS---SSS-----------S-----------------------------------S--S---------------------
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----
>forward_320
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------------------------------------------------------------AAGGGATGGCTTCTCCTCCT
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>reverse_1475
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----------------------------------TGCCCTCCACCGTATTGAGT--------------------------
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----
>forward_382
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------------------------------------------TTCGTGTTGAGGGGAGTGTG------------------
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>reverse_1515
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--------------------------------------------------------------------------AATAGT
TTGGAGGCGGTGTCG-----------------------------------------------------------------
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----
>forward_384
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--------------------------------------------CGTGTTGAGGGGAGTGTGTT----------------
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>reverse_2360
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---------------------------------------TCACGACTCCATCAGGGTAGG--------------------
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----
