AutoCloner

Multiple sequence alignment - TraesCS4B01G200800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G200800	chr4B	100.000	2802	0	0	1	2802	428963857	428966658	0.000000e+00	5175.0
1	TraesCS4B01G200800	chr4B	82.927	410	37	18	540	922	543283653	543283250	3.460000e-89	339.0
2	TraesCS4B01G200800	chr4B	81.792	346	35	14	603	922	115554320	115554663	5.950000e-67	265.0
3	TraesCS4B01G200800	chr4A	88.595	2876	138	58	1	2776	116478762	116475977	0.000000e+00	3319.0
4	TraesCS4B01G200800	chr4D	93.737	1884	60	22	924	2771	348795723	348797584	0.000000e+00	2772.0
5	TraesCS4B01G200800	chr2A	83.855	415	40	16	535	923	110894344	110893931	1.230000e-98	370.0
6	TraesCS4B01G200800	chr2A	83.735	166	25	2	72	235	36060709	36060544	3.740000e-34	156.0
7	TraesCS4B01G200800	chr3B	82.759	435	41	17	520	923	112434288	112433857	9.540000e-95	357.0
8	TraesCS4B01G200800	chr3B	83.212	411	41	18	536	924	726267464	726267060	4.440000e-93	351.0
9	TraesCS4B01G200800	chr5D	96.190	210	8	0	1315	1524	480618649	480618440	7.430000e-91	344.0
10	TraesCS4B01G200800	chr5D	80.357	336	43	13	608	922	394825636	394825969	1.680000e-57	233.0
11	TraesCS4B01G200800	chr5D	87.861	173	20	1	72	244	508988995	508988824	4.730000e-48	202.0
12	TraesCS4B01G200800	chr3A	82.410	415	43	17	536	923	747594802	747594391	4.470000e-88	335.0
13	TraesCS4B01G200800	chr3A	81.095	402	48	15	540	922	743983739	743983347	2.110000e-76	296.0
14	TraesCS4B01G200800	chr3A	80.952	378	46	15	566	924	67387718	67387348	2.750000e-70	276.0
15	TraesCS4B01G200800	chr3A	77.692	390	49	24	547	912	743983357	743983732	1.320000e-48	204.0
16	TraesCS4B01G200800	chr3A	100.000	30	0	0	362	391	479071251	479071280	3.900000e-04	56.5
17	TraesCS4B01G200800	chr7B	82.555	407	44	15	540	922	74852347	74851944	1.610000e-87	333.0
18	TraesCS4B01G200800	chr7B	83.791	364	31	15	540	876	184195313	184194951	1.250000e-83	320.0
19	TraesCS4B01G200800	chr7B	81.327	407	53	13	536	923	175989423	175989021	2.710000e-80	309.0
20	TraesCS4B01G200800	chr7B	86.087	230	31	1	72	301	412092542	412092314	2.160000e-61	246.0
21	TraesCS4B01G200800	chr5B	82.020	406	45	16	537	922	17948819	17949216	1.250000e-83	320.0
22	TraesCS4B01G200800	chr5B	83.186	226	17	11	717	923	40479359	40479582	1.330000e-43	187.0
23	TraesCS4B01G200800	chr5B	100.000	29	0	0	363	391	600935302	600935330	1.000000e-03	54.7
24	TraesCS4B01G200800	chr1B	81.863	408	45	18	536	922	32402359	32401960	1.620000e-82	316.0
25	TraesCS4B01G200800	chr7A	87.981	208	25	0	94	301	721178158	721178365	2.160000e-61	246.0
26	TraesCS4B01G200800	chr3D	84.979	233	31	4	72	301	554148918	554148687	1.680000e-57	233.0
27	TraesCS4B01G200800	chr3D	100.000	29	0	0	363	391	359619337	359619365	1.000000e-03	54.7
28	TraesCS4B01G200800	chr3D	100.000	29	0	0	362	390	523191902	523191930	1.000000e-03	54.7
29	TraesCS4B01G200800	chr3D	100.000	28	0	0	363	390	498843481	498843508	5.000000e-03	52.8
30	TraesCS4B01G200800	chr6B	83.333	180	28	2	72	249	622633728	622633549	6.210000e-37	165.0
31	TraesCS4B01G200800	chr6A	91.228	114	10	0	182	295	611906812	611906699	3.740000e-34	156.0
32	TraesCS4B01G200800	chr6A	94.286	35	0	2	363	397	535433484	535433452	5.000000e-03	52.8
33	TraesCS4B01G200800	chr7D	100.000	28	0	0	363	390	84234648	84234675	5.000000e-03	52.8
34	TraesCS4B01G200800	chr2D	100.000	28	0	0	363	390	121373537	121373564	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G200800	chr4B	428963857	428966658	2801	False	5175	5175	100.000	1	2802	1	chr4B.!!$F2	2801
1	TraesCS4B01G200800	chr4A	116475977	116478762	2785	True	3319	3319	88.595	1	2776	1	chr4A.!!$R1	2775
2	TraesCS4B01G200800	chr4D	348795723	348797584	1861	False	2772	2772	93.737	924	2771	1	chr4D.!!$F1	1847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
172	182	0.477204	ACATGGCATCCCTCATCCAG	59.523	55.0	0.0	0.0	31.36	3.86	F
537	570	0.655733	AACAAACACTTGAGACGCCG	59.344	50.0	0.0	0.0	36.33	6.46	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1669	1742	1.27055	TCCTACCGACGAGACCAAAAC	59.729	52.381	0.0	0.0	0.0	2.43	R
2173	2266	1.00225	GTAGACCACGCAGACACACG	61.002	60.000	0.0	0.0	0.0	4.49	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	61	2.032426	GCCTCTAGTGAGAAGCTCGTAC	59.968	54.545	0.00	0.00	42.73	3.67
83	93	7.569599	ATCTCTGTTTAGTTTCTTTAGGGGA	57.430	36.000	0.00	0.00	0.00	4.81
84	94	7.383156	TCTCTGTTTAGTTTCTTTAGGGGAA	57.617	36.000	0.00	0.00	0.00	3.97
134	144	3.017048	TGAAGTGGGATGCAATAAGGG	57.983	47.619	0.00	0.00	0.00	3.95
136	146	3.245586	TGAAGTGGGATGCAATAAGGGTT	60.246	43.478	0.00	0.00	0.00	4.11
140	150	2.042297	TGGGATGCAATAAGGGTTGTGA	59.958	45.455	0.00	0.00	0.00	3.58
144	154	2.790433	TGCAATAAGGGTTGTGAGGTC	58.210	47.619	0.00	0.00	0.00	3.85
172	182	0.477204	ACATGGCATCCCTCATCCAG	59.523	55.000	0.00	0.00	31.36	3.86
214	224	8.401709	AGCTAAACTATCTGCTTCTTTATTTGC	58.598	33.333	0.00	0.00	30.96	3.68
226	236	3.816523	TCTTTATTTGCCGTTCGTCCTTT	59.183	39.130	0.00	0.00	0.00	3.11
235	245	3.124128	GCCGTTCGTCCTTTAAAGGTAAG	59.876	47.826	29.19	21.44	46.54	2.34
248	258	9.758651	CCTTTAAAGGTAAGTTTGCAGTTAAAT	57.241	29.630	23.89	0.00	41.41	1.40
253	263	5.600898	AGGTAAGTTTGCAGTTAAATTGGGT	59.399	36.000	0.00	0.00	0.00	4.51
255	265	6.201997	GGTAAGTTTGCAGTTAAATTGGGTTG	59.798	38.462	0.00	0.00	0.00	3.77
258	268	3.658757	TGCAGTTAAATTGGGTTGCTC	57.341	42.857	6.76	0.00	33.00	4.26
272	282	2.104572	TTGCTCGCTGCTTGGTCTCT	62.105	55.000	0.00	0.00	43.37	3.10
332	362	2.167161	CGTCCAACGCAAGCCATAA	58.833	52.632	0.00	0.00	45.62	1.90
334	364	1.531677	CGTCCAACGCAAGCCATAATG	60.532	52.381	0.00	0.00	45.62	1.90
414	447	1.002792	AGGAGAGGAGAAGGCCCAG	59.997	63.158	0.00	0.00	0.00	4.45
432	465	1.005748	GCAAAGTTTCAGCTGGCCC	60.006	57.895	15.13	1.41	0.00	5.80
443	476	1.817099	GCTGGCCCGAGATTCTGTG	60.817	63.158	0.00	0.00	0.00	3.66
483	516	5.185635	CCAGGATTGTAATGACACACCAATT	59.814	40.000	7.38	0.00	34.48	2.32
537	570	0.655733	AACAAACACTTGAGACGCCG	59.344	50.000	0.00	0.00	36.33	6.46
538	571	1.157870	ACAAACACTTGAGACGCCGG	61.158	55.000	0.00	0.00	36.33	6.13
585	618	6.714810	AGAAATGCTCATGGTGTAACAGTAAA	59.285	34.615	0.00	0.00	39.98	2.01
586	619	7.394359	AGAAATGCTCATGGTGTAACAGTAAAT	59.606	33.333	0.00	0.00	39.98	1.40
587	620	6.683974	ATGCTCATGGTGTAACAGTAAATC	57.316	37.500	0.00	0.00	39.98	2.17
588	621	5.555966	TGCTCATGGTGTAACAGTAAATCA	58.444	37.500	0.00	0.00	39.98	2.57
589	622	6.000840	TGCTCATGGTGTAACAGTAAATCAA	58.999	36.000	0.00	0.00	39.98	2.57
590	623	6.488344	TGCTCATGGTGTAACAGTAAATCAAA	59.512	34.615	0.00	0.00	39.98	2.69
591	624	7.013750	TGCTCATGGTGTAACAGTAAATCAAAA	59.986	33.333	0.00	0.00	39.98	2.44
592	625	7.865385	GCTCATGGTGTAACAGTAAATCAAAAA	59.135	33.333	0.00	0.00	39.98	1.94
665	700	5.502153	AATGTTTGTTGTGCATGCAAAAT	57.498	30.435	25.58	6.44	34.47	1.82
674	709	2.871022	GTGCATGCAAAATTTCACCACA	59.129	40.909	24.58	0.00	0.00	4.17
713	748	6.756299	AAGTCATGCCAAAACAACAAAATT	57.244	29.167	0.00	0.00	0.00	1.82
749	784	8.801715	AATGCTTTTGTAAGTAACATGTTCAG	57.198	30.769	15.85	0.00	38.10	3.02
755	790	6.056090	TGTAAGTAACATGTTCAGGGCATA	57.944	37.500	15.85	0.00	31.43	3.14
756	791	6.112734	TGTAAGTAACATGTTCAGGGCATAG	58.887	40.000	15.85	0.00	31.43	2.23
913	962	3.567478	ATGCTCCTGGATGTAGAAACC	57.433	47.619	0.00	0.00	0.00	3.27
918	967	1.406887	CCTGGATGTAGAAACCCCACG	60.407	57.143	0.00	0.00	0.00	4.94
974	1023	2.597217	TTTCAAGGCCCCGTGCAG	60.597	61.111	0.00	0.00	43.89	4.41
1041	1090	2.234296	AAACCAGGAGGGGAGCCAG	61.234	63.158	0.00	0.00	42.91	4.85
1570	1631	1.225827	GTGTACACGATCGTCGCGA	60.226	57.895	19.84	3.71	45.12	5.87
1669	1742	1.315257	CGGGGAATGAGCTTGGTTGG	61.315	60.000	0.00	0.00	0.00	3.77
1725	1798	7.754069	TGTAATTTATTACGTACAACCTCCG	57.246	36.000	0.00	0.00	44.21	4.63
1844	1930	3.815401	ACTCCACTTCCAGAATTGTTTCG	59.185	43.478	0.00	0.00	36.93	3.46
1925	2013	1.614317	GGATGGAAGTTCCCCACTGTG	60.614	57.143	19.42	0.00	35.12	3.66
1926	2014	1.073923	GATGGAAGTTCCCCACTGTGT	59.926	52.381	19.42	0.00	35.12	3.72
1940	2028	3.561725	CCACTGTGTTGAGAAGAAACTCC	59.438	47.826	7.08	0.00	36.22	3.85
1943	2031	3.454375	TGTGTTGAGAAGAAACTCCGTC	58.546	45.455	0.00	0.00	36.22	4.79
1959	2047	4.662961	TCGAGGCTGCCGTGTGTG	62.663	66.667	13.96	0.90	0.00	3.82
1972	2064	2.621338	CGTGTGTGGCTGTTGAGATAT	58.379	47.619	0.00	0.00	0.00	1.63
2000	2092	0.940126	GCATTGCTACCGAGATGTGG	59.060	55.000	0.16	0.00	0.00	4.17
2173	2266	3.005554	CGCAGGGGATATCAATGATGTC	58.994	50.000	10.95	10.95	30.96	3.06
2186	2283	0.939106	TGATGTCGTGTGTCTGCGTG	60.939	55.000	0.00	0.00	0.00	5.34
2215	2320	0.613260	TATCCACAGCTCCACCACAC	59.387	55.000	0.00	0.00	0.00	3.82
2216	2321	2.129555	ATCCACAGCTCCACCACACC	62.130	60.000	0.00	0.00	0.00	4.16
2217	2322	2.666190	CACAGCTCCACCACACCG	60.666	66.667	0.00	0.00	0.00	4.94
2218	2323	3.161450	ACAGCTCCACCACACCGT	61.161	61.111	0.00	0.00	0.00	4.83
2220	2325	3.626924	AGCTCCACCACACCGTCC	61.627	66.667	0.00	0.00	0.00	4.79
2221	2326	3.936203	GCTCCACCACACCGTCCA	61.936	66.667	0.00	0.00	0.00	4.02
2222	2327	2.825982	CTCCACCACACCGTCCAA	59.174	61.111	0.00	0.00	0.00	3.53
2223	2328	1.147376	CTCCACCACACCGTCCAAA	59.853	57.895	0.00	0.00	0.00	3.28
2224	2329	0.884704	CTCCACCACACCGTCCAAAG	60.885	60.000	0.00	0.00	0.00	2.77
2237	2344	2.731968	CGTCCAAAGAATTTCCATGGCG	60.732	50.000	6.96	13.06	35.03	5.69
2280	2387	2.420827	CCAACCAATGGCACCTCGTATA	60.421	50.000	0.00	0.00	43.80	1.47
2331	2439	2.788786	CGCAACACAGTTTTTCCACATC	59.211	45.455	0.00	0.00	0.00	3.06
2333	2441	2.774439	ACACAGTTTTTCCACATCGC	57.226	45.000	0.00	0.00	0.00	4.58
2369	2479	2.223641	ACTTGACTAACGCACAAGACGA	60.224	45.455	12.04	0.00	42.12	4.20
2398	2508	2.025605	TCATGAGAAATTCCCAGCAGCT	60.026	45.455	0.00	0.00	0.00	4.24
2399	2509	1.830279	TGAGAAATTCCCAGCAGCTG	58.170	50.000	16.23	16.23	0.00	4.24
2422	2532	2.106511	TGCTGCTTACTTTTCCACTCCT	59.893	45.455	0.00	0.00	0.00	3.69
2669	2784	5.148651	AGACAAGTCGCTTTAATACAGGT	57.851	39.130	0.00	0.00	34.09	4.00
2703	2835	1.630148	CGTGCAGCAAGTAGGTAGAC	58.370	55.000	0.00	0.00	0.00	2.59
2704	2836	1.630148	GTGCAGCAAGTAGGTAGACG	58.370	55.000	0.00	0.00	0.00	4.18
2727	2859	3.137533	AGAAAGAGACACTTCTGCAAGC	58.862	45.455	0.00	0.00	37.93	4.01
2771	2903	6.627395	TTAGTTTGAAGATTTGGCGAGAAA	57.373	33.333	0.00	0.00	0.00	2.52
2776	2908	4.071423	TGAAGATTTGGCGAGAAATGTCA	58.929	39.130	0.00	0.00	0.00	3.58
2777	2909	4.518590	TGAAGATTTGGCGAGAAATGTCAA	59.481	37.500	0.00	0.00	0.00	3.18
2778	2910	5.009510	TGAAGATTTGGCGAGAAATGTCAAA	59.990	36.000	0.00	0.00	44.14	2.69
2779	2911	5.452078	AGATTTGGCGAGAAATGTCAAAA	57.548	34.783	0.00	0.00	43.35	2.44
2780	2912	5.464168	AGATTTGGCGAGAAATGTCAAAAG	58.536	37.500	0.00	0.00	43.35	2.27
2781	2913	4.909696	TTTGGCGAGAAATGTCAAAAGA	57.090	36.364	0.00	0.00	37.93	2.52
2782	2914	4.488126	TTGGCGAGAAATGTCAAAAGAG	57.512	40.909	0.00	0.00	0.00	2.85
2783	2915	3.476552	TGGCGAGAAATGTCAAAAGAGT	58.523	40.909	0.00	0.00	0.00	3.24
2784	2916	3.882888	TGGCGAGAAATGTCAAAAGAGTT	59.117	39.130	0.00	0.00	0.00	3.01
2785	2917	4.338118	TGGCGAGAAATGTCAAAAGAGTTT	59.662	37.500	0.00	0.00	0.00	2.66
2786	2918	4.676924	GGCGAGAAATGTCAAAAGAGTTTG	59.323	41.667	0.00	0.00	44.71	2.93
2787	2919	4.676924	GCGAGAAATGTCAAAAGAGTTTGG	59.323	41.667	0.00	0.00	43.70	3.28
2789	2921	4.948847	AGAAATGTCAAAAGAGTTTGGCC	58.051	39.130	0.00	0.00	46.75	5.36
2790	2922	4.405358	AGAAATGTCAAAAGAGTTTGGCCA	59.595	37.500	0.00	0.00	46.75	5.36
2791	2923	3.733443	ATGTCAAAAGAGTTTGGCCAC	57.267	42.857	3.88	0.00	46.75	5.01
2792	2924	1.754226	TGTCAAAAGAGTTTGGCCACC	59.246	47.619	3.88	0.00	46.75	4.61
2793	2925	1.754226	GTCAAAAGAGTTTGGCCACCA	59.246	47.619	3.88	0.00	42.44	4.17
2794	2926	2.365293	GTCAAAAGAGTTTGGCCACCAT	59.635	45.455	3.88	0.00	42.44	3.55
2795	2927	2.364970	TCAAAAGAGTTTGGCCACCATG	59.635	45.455	3.88	0.00	43.70	3.66
2796	2928	2.086610	AAAGAGTTTGGCCACCATGT	57.913	45.000	3.88	0.00	31.53	3.21
2797	2929	2.086610	AAGAGTTTGGCCACCATGTT	57.913	45.000	3.88	0.00	31.53	2.71
2798	2930	1.331214	AGAGTTTGGCCACCATGTTG	58.669	50.000	3.88	0.00	31.53	3.33
2799	2931	1.133513	AGAGTTTGGCCACCATGTTGA	60.134	47.619	3.88	0.00	31.53	3.18
2800	2932	1.000274	GAGTTTGGCCACCATGTTGAC	60.000	52.381	3.88	0.00	31.53	3.18
2801	2933	0.749649	GTTTGGCCACCATGTTGACA	59.250	50.000	3.88	0.00	31.53	3.58

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
134	144	2.420722	TGTTTGGTTTCGACCTCACAAC	59.579	45.455	0.00	0.00	0.00	3.32
136	146	2.404923	TGTTTGGTTTCGACCTCACA	57.595	45.000	0.00	0.00	0.00	3.58
140	150	0.958822	GCCATGTTTGGTTTCGACCT	59.041	50.000	0.00	0.00	45.57	3.85
144	154	1.404047	GGGATGCCATGTTTGGTTTCG	60.404	52.381	0.00	0.00	45.57	3.46
176	186	8.678199	GCAGATAGTTTAGCTAACTTTTCCAAT	58.322	33.333	5.45	0.00	44.73	3.16
180	190	9.157104	AGAAGCAGATAGTTTAGCTAACTTTTC	57.843	33.333	5.45	6.37	44.73	2.29
226	236	8.145122	CCCAATTTAACTGCAAACTTACCTTTA	58.855	33.333	0.00	0.00	0.00	1.85
235	245	4.126437	AGCAACCCAATTTAACTGCAAAC	58.874	39.130	0.00	0.00	32.21	2.93
255	265	1.809209	GAGAGACCAAGCAGCGAGC	60.809	63.158	0.00	0.00	46.19	5.03
258	268	1.067565	TGTAAGAGAGACCAAGCAGCG	60.068	52.381	0.00	0.00	0.00	5.18
414	447	1.005748	GGGCCAGCTGAAACTTTGC	60.006	57.895	17.39	7.88	0.00	3.68
432	465	3.801050	CCACATCTAAGCACAGAATCTCG	59.199	47.826	0.00	0.00	0.00	4.04
443	476	1.098050	CTGGTTGGCCACATCTAAGC	58.902	55.000	3.88	0.00	40.46	3.09
462	495	7.378181	AGAAAATTGGTGTGTCATTACAATCC	58.622	34.615	0.00	0.00	37.36	3.01
494	527	7.067496	TCGAGAGAATATTGGGAGCTTAAAT	57.933	36.000	0.00	0.00	37.03	1.40
646	681	5.227598	GTGAAATTTTGCATGCACAACAAAC	59.772	36.000	22.58	12.85	33.29	2.93
665	700	5.830457	TCACCTATGTGATTTTGTGGTGAAA	59.170	36.000	9.16	0.00	46.40	2.69
695	730	7.334171	GGAGCTATAATTTTGTTGTTTTGGCAT	59.666	33.333	0.00	0.00	0.00	4.40
874	923	3.740764	GCATTTTGCTCCTGGTTTGAACA	60.741	43.478	0.00	0.00	40.96	3.18
902	951	1.406477	GGGACGTGGGGTTTCTACATC	60.406	57.143	0.00	0.00	0.00	3.06
903	952	0.616891	GGGACGTGGGGTTTCTACAT	59.383	55.000	0.00	0.00	0.00	2.29
918	967	0.034863	TGGAAATTGTAGGCGGGGAC	60.035	55.000	0.00	0.00	0.00	4.46
1179	1240	4.838152	TCATCGCCGGAGCTTGCC	62.838	66.667	5.05	0.00	36.60	4.52
1570	1631	4.347453	GACGTACACGGTGCCGGT	62.347	66.667	20.22	11.79	44.95	5.28
1653	1714	3.392882	CAAAACCAACCAAGCTCATTCC	58.607	45.455	0.00	0.00	0.00	3.01
1669	1742	1.270550	TCCTACCGACGAGACCAAAAC	59.729	52.381	0.00	0.00	0.00	2.43
1725	1798	3.426568	GCACAGCTCGGCAACTCC	61.427	66.667	1.33	0.00	0.00	3.85
1821	1907	4.275936	CGAAACAATTCTGGAAGTGGAGTT	59.724	41.667	13.86	6.18	40.33	3.01
2000	2092	4.566004	TCTACAAGTGCAAGTACACATCC	58.434	43.478	0.00	0.00	43.23	3.51
2161	2254	3.865164	GCAGACACACGACATCATTGATA	59.135	43.478	0.00	0.00	0.00	2.15
2173	2266	1.002250	GTAGACCACGCAGACACACG	61.002	60.000	0.00	0.00	0.00	4.49
2186	2283	3.319689	GGAGCTGTGGATAAGAGTAGACC	59.680	52.174	0.00	0.00	0.00	3.85
2215	2320	2.417243	GCCATGGAAATTCTTTGGACGG	60.417	50.000	18.40	0.30	0.00	4.79
2216	2321	2.731968	CGCCATGGAAATTCTTTGGACG	60.732	50.000	18.40	13.77	0.00	4.79
2217	2322	2.231235	ACGCCATGGAAATTCTTTGGAC	59.769	45.455	18.40	8.18	0.00	4.02
2218	2323	2.230992	CACGCCATGGAAATTCTTTGGA	59.769	45.455	18.40	0.00	0.00	3.53
2237	2344	3.799755	CTGTTTAGCGCGGGCCAC	61.800	66.667	22.01	15.59	41.24	5.01
2331	2439	1.448540	GTCCACCTGTGATCTGGCG	60.449	63.158	0.00	0.00	36.34	5.69
2333	2441	1.625315	TCAAGTCCACCTGTGATCTGG	59.375	52.381	0.00	0.00	38.41	3.86
2369	2479	4.150359	GGGAATTTCTCATGATGGATGCT	58.850	43.478	0.00	0.00	31.32	3.79
2398	2508	1.608590	GTGGAAAAGTAAGCAGCAGCA	59.391	47.619	3.17	0.00	45.49	4.41
2399	2509	1.882623	AGTGGAAAAGTAAGCAGCAGC	59.117	47.619	0.00	0.00	42.56	5.25
2422	2532	4.470334	GGCATTGCCTTTTTCTTATGGA	57.530	40.909	20.66	0.00	46.69	3.41
2451	2563	2.095213	TGCATCGAATAAAAGTCCGCAC	59.905	45.455	0.00	0.00	0.00	5.34
2669	2784	1.817881	CACGGTATTGGTAGGGCGA	59.182	57.895	0.00	0.00	0.00	5.54
2703	2835	2.288457	TGCAGAAGTGTCTCTTTCTCCG	60.288	50.000	0.00	0.00	36.40	4.63
2704	2836	3.393089	TGCAGAAGTGTCTCTTTCTCC	57.607	47.619	0.00	0.00	36.40	3.71
2727	2859	0.530211	CGAGAGATGGCCTGAAGCTG	60.530	60.000	3.32	0.00	43.05	4.24
2771	2903	2.365293	GGTGGCCAAACTCTTTTGACAT	59.635	45.455	7.24	0.00	44.38	3.06
2776	2908	2.397597	ACATGGTGGCCAAACTCTTTT	58.602	42.857	7.24	0.00	36.95	2.27
2777	2909	2.086610	ACATGGTGGCCAAACTCTTT	57.913	45.000	7.24	0.00	36.95	2.52
2778	2910	1.688197	CAACATGGTGGCCAAACTCTT	59.312	47.619	7.24	0.00	36.95	2.85
2779	2911	1.133513	TCAACATGGTGGCCAAACTCT	60.134	47.619	7.24	0.00	36.95	3.24
2780	2912	1.000274	GTCAACATGGTGGCCAAACTC	60.000	52.381	7.24	0.00	36.95	3.01
2781	2913	1.039856	GTCAACATGGTGGCCAAACT	58.960	50.000	7.24	0.00	36.95	2.66
2782	2914	0.749649	TGTCAACATGGTGGCCAAAC	59.250	50.000	13.89	3.89	36.95	2.93
2783	2915	3.214023	TGTCAACATGGTGGCCAAA	57.786	47.368	13.89	0.00	36.95	3.28

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.