>input_sequence_68418
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--------GAAAGTTATCCAAAACCAGCGGCAAACCAGGAGGGGAGCCAGCCAAGCAGCCGCGCGACGATGAAGTGCTGG
TGCACACATGCGCCCAAGGGAGCAATGGCGACGCCGCTCTCCAGCCCCTTCTCCGTCCCCACCCTCCGCGCCCCGCTCTG
GCACGGCCGCCTCCACGCG------------CCTCTCCGGGCAAGCTCCGGCGATGACGCCGCCGCCGGGCCGGAGACGC
CGGCCCCGGTCGCCACCGCCCCCGCCGCGGACGAGGAGTTCGAGAAGCGCGTCCTGCAGCTGAAGTCCCGCGTCGGGCCC
AAGAAGCGGGGTAGCGCCGGGGCGCGCAAGAGGAAGGCGGCCGCCGAGTCCAACGCCGTCACGCTGCCGCCGGTGCCGCT
GCGGGAGCCCCGGTCGGCCCTCGGCCTGCCCGTGGAGTTCGGCTTCACCGCCTACAGCGAGCGGCTCAACGGCCTGCTGG
CCACGGTGGGCCTCACCGCGCTGCTGCTGGTGGAGCTCGGCTCCGGCAAGTCCCTGGTGAAGTACCACCAGGCGCCCACG
CTGTTCCTGCAGGTGTACACGATCGTCGCGACCGGCACCGTGTACGTCAAGTACGAGAAGGAGCGGATCAGCGTCTGGCC
GGCGCCGGCGCCGCCCAAGGCGCCGACGAGCGGGGAATGAGCT------------TGGTTGGTTTTGGTCTCGTCGGTAG
GATGCTTCCATTTTGTAATTTATTACGTACAACCTCCGG--AGTTGCCGAG-----CTGTGCTGTAAAAACTGAAATTGC
TTAACCACGCGAGTTCAAAAAAAT------ACAGAATGTTTACTTAC---------------------------------
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>chr4B_1_TraesCS4B01G200800
TAGTAAAGTTTCTATTAGTTGGATTGTCGAGCCTCTAG---------TGAGAAGCTCGTACATGATGTATCTCTGTTTAG
TTTCTTTAGGGGAAAAACTAAATTTGATTGATCAAATACCACTTGAAGTGGGATGCAATAAGGGTTGTGAGGTCGAAACC
AAACATGGCATCCCTCATCCAGAGAATTGGAAAAGTTAGCTAAACTATCTGCTTCTTTATTTGCCGTTCGTCCTTTAAAG
GTAAGTTTGCAGTTAAATTGGGTTGCTCGCTGCTTGGTCTCTCTTACAATGCTATCATTGTTG-----------------
---CTCCTTGATAATTTGCTTCGCGTCCAACGCAAGCCATAATGGCCTTTTTTAAAATAA---AAAAATCTTTATAAACA
CCTTGCATTGTACAAGGCCTTACGGGCCAGGAGAGGAGAAGGCCCAGCAAAGTTTCAGCTGGCCCGAGATTCTGTGCTTA
GATGTGGCCAACCAGGATTGTAATGACACACCAATTTTCTTGTTATATTTAAGCTCCCAATATTCTCTCGAACAAACACT
TGAGACGCCGGAAGTACCTTTCTACACCCAGGAGAAATGCTCATGGTGTAACAGTAAATCAAAAAAATTCAATAAAAATC
AAAAAATTCTGATTTTT--TGGTGAAATACTTTCACAAATGTTTGTTGTGCATGCAAAATTTCACCACAAAATCACATAG
GTGAAAGTCATGCCAAAACAACAAAATTATAGCTCCAAAATGCTTTTGTAAGTAACATGTTCAGGGCATAG-TTTTTTTT
ACCACGCCTTCCACCAATGTGGTTACGTG---------TGCATGCACAACAAACATTTGTGAAAGTATGCCAAAAAAATC
AGAATGCTTTGAATTCTTCTTTCTAT----TTTTTATTTTACTGTTCAAACCAGGAGCAAAATGCTCCTGGATGTAGAAA
CCCCACGTCCCCGCCTACAATTTCCATTTTGCAACGTGCGGCAGCTTTCAAGGCCCCGTGCAGGCAGCGGAGCCACGCAT
CGACCACCGAAAGTTATCCAAAACCAGCGGCAAACCAGGAGGGGAGCCAGCCAAGCAGCCGCGCGACGATGAAGTGCTGG
TGCACACATGCGCCCAAGGGAGCAATGGCGACGCCGCTCTCCAGCCCCTTCTCCGTCCCCACCCTCCGCGCCCCGCTCTG
GCACGGCCGCCTCCACGCG------------CCTCTCCGGGCAAGCTCCGGCGATGACGCCGCCGCCGGGCCGGAGACGC
CGGCCCCGGTCGCCACCGCCCCCGCCGCGGACGAGGAGTTCGAGAAGCGCGTCCTGCAGCTGAAGTCCCGCGTCGGGCCC
AAGAAGCGGGGTAGCGCCGGGGCGCGCAAGAGGAAGGCGGCCGCCGAGTCCAACGCCGTCACGCTGCCGCCGGTGCCGCT
GCGGGAGCCCCGGTCGGCCCTCGGCCTGCCCGTGGAGTTCGGCTTCACCGCCTACAGCGAGCGGCTCAACGGCCTGCTGG
CCACGGTGGGCCTCACCGCGCTGCTGCTGGTGGAGCTCGGCTCCGGCAAGTCCCTGGTGAAGTACCACCAGGCGCCCACG
CTGTTCCTGCAGGTGTACACGATCGTCGCGACCGGCACCGTGTACGTCAAGTACGAGAAGGAGCGGATCAGCGTCTGGCC
GGCGCCGGCGCCGCCCAAGGCGCCGACGAGCGGGGAATGAGCT------------TGGTTGGTTTTGGTCTCGTCGGTAG
GATGCTTCCATTTTGTAATTTATTACGTACAACCTCCGG--AGTTGCCGAG-----CTGTGCTGTAAAAACTGAAATTGC
TTAACCACGCGAGTTCAAAAAAAT------ACAGAATGTTTACTTACAGTCGGCTGACCTTTTTTTAACTCCACTTCCAG
AATTGTTTCGTTTTTTTTAAGGGACACTTGTTTCATTTTACTAGGTGAGATGAGATTGAATTTCTTTCGTGGATGGAAGT
TCCCCAC--TGTGTTGAGAAGAAACTCCGTCGAGGCTGCCGTGTGTGGCT----GTTGAGATATTTTTTGGGGCATTGCT
ACCGAGATGTGG-GATGTGTACTTGCACTTGTAGATTTTCTTTCTCGGATCGTCTTAAACAGGAGAATTTCCACGAAATG
GACAAAAGTGGAGCCAAACAACAAACCGCTGCCGTTGGTCCTCGTCCGTGACTGCGTTTGCTACGTGGACCATATTCTGC
CCAACGCAGGGGATATCAATGATGTCGTGTGT----CTGCGTGGTCTACTCTTATCCACAGCTCCACCAC--------AC
CGTCCAAAG--AATTTCCATGGCGTGGCCCGCGCTAAACAGGCGACCAACCAATGGCACCTCGTATA-CGAGCAGCGCAG
CCAATGATACGCATCGTCGCAACACAGTTTTTCCACATCGCCAGATCACAGGTGGACTTGACTA--ACGCACAAGACGAG
CATCCATCATGAGAAATTCCCAGCAGCTGCTGCTGCTTACTTTTCCACTCCTCCATAAGAAAAA--GGCAATGCCAAACA
CAGTGCGGACTTTTATTCGATGCAAATTGCCC---GGCGGTGGTGCAGGTCACACCCATTAATAAACAGTAGGTAAAAAG
TCTGGTCCAAAGACAGCAACAAGTCCTAATTAAACCACATCCAAACCGGGTGGGTATTGTATGCGTACCGTACCGTATCC
CATCTGCTTTTCCAGACCAACAACTAGGCAAATTATAGTGAAGACAAGTCGCTTTAATACAGGTCGCCCTACCAATACCG
TGCAGCAAGT--------AGGTAG---------ACGGAGAAAGAGACACTTCTGCAAGCAGCTTCAGGCCATCTCTCGTT
TAGTTTGAAGATTTGGCGAGAAATGTCAAAAGAGTTTGGCCACCATGTTGACA
>chr4A_1
TAGTAAAGTTTCTATTAGTTGGATTGTCGAGCCTCTAGAGTGTCTGGTGAGAAGCTCGTAGATGATGTATCTCTGTTTAG
TTTCTTTAGGGGGGAAACTAAATTTTATTGATCAAATACCACTTGAAGTGGGATGCAATAAGGATCGTGGGGTTGAAACC
AAACATGGCATCCCTCATCCACAGAGTTGAAAAACTTAGCTAAACTATCTGCTTCTTTATTTGTCGTTCGTCCTTCAAAG
GTAAATTTGCAGTTAAAATTGGCTCCTTGCTGCTTGGTCTCCCTTACAATGCTATCATTGTTGCTCCTTGTGCCTTCATG
TATCTCCTTGATAATTTGCTTCGCGTCCAACGCAAGCCTTATTTGCCTTTTTTAAAAATAAATAAAAATCTTTATAAACG
CCTTGCATTGTACAAGGCCTTACGGGCCAGGAGAGGAGAAGGCCCATCAAAGTTTCAGCTGGCCTGAGATTCTGTACTTA
GATGTGGCCAACCATGATTGTAATGACACACCAATGTTCTTGTTATTTTTAAGCTCCCAATTTTCTCTCGAACAAACACT
TGAGACGCCA-AAGTACCTTTCTACACCCAGGAGAAATGCTCATGGTGTAACAGTAA-----------------------
AAAAAATCCTGAATTTTATTGGTGACATACTTTAACAAATCTTTGTTGTGCATGCAAAAATTCACCACGAAATCACATAG
GTGAAAGTCGTGCCAAAACAACAAAATCATAGCTCCAAAATGCTTTTGTAAGTAACATGTTCAAGGCATCATTTTTTTTT
ACCACGTCTTCCACCAATGTGATTACGCGGTGAATTTTTGCATGCACAACAAACATTTGTGAAAGCATGCCAAAAAA-TC
AGAATATTTTGAATTCTTCTTTCTATTTATTTTTTATTTTACAGTTCAAACCAGGAGCAAAATGCTCCTGATTGTAGAAA
CTCCACATCCCCGCCTACAATTTCCATTTTGCAACGTGCGGCAGCTTTCAAGGCCCCGTGCATGCACCGGAGCCACGCAT
CGACCACCGAAAGTTATCCAAAACCAGCGGCAAACCAGGAGGGGAGCCAAGCAAGCAGCCGCGCGACCATGAAGTGCTGG
TGCACACATGCGCCCAAGGGAGCAATGGCGACGCCGCTCTCCAGCCCCTTCTCCGTCACCACCCTCCGGGCCCCGCTCTG
GCACGGCCGCCTCCACGCACCGCCGCTGCCTCCCCTCCGCGCAAGCTCCGGCGATGACGCCGCCG---GGCCGGAGACGC
CGGCCCCGGTCGCCACCGCCCCCGCCGCCGACGAGGAGTTCGAGAAGCGCGTGCTGCAGCTGAAGTCCCGCGTCGGGCCC
AAGAAGCGGGGCAGCGCCGGGGCGCGCAAGAGGAAGGCCGCCGCCGAGTCCAACGCCGTCACGCTGCCGCCGGTGCCGCT
GCGGGAGCCACGGTCGGCGCTTGGCCTGCCCGTGGAGTTCGGCTTCACCGCCTACAGCGAGCGGCTCAACGGCCTGCTGG
CCACGGTGGGCCTCACCGCGCTGCTACTGGTGGAGCTCGGCTCCGGCAAGTCGCTGGTCAAGTACCACCAGGCGCCCACG
CTGTTCCTGCAGGTGTACACGATCGTCGCGGCGGGCACCGTGTACGTCAAGTACGAGAAGGAGCGGATCAGCGTCTGGCC
GGCGCCGGCGCCGCCCAAGGCGCCGACGAGCGGCGAATAAGCTACTGGCTCTTCTTGGTTGATTTTGGTCTCGTCCGTAG
GATGCTTCCATTTTGTAATTTATT---TACAACCTCCTATAAGTTGCCGAG-----CAGTGCTGTAAAAACTGAAATTGC
CTAACCACGCGAGTTCAAAAAAAT------A-----TGTTTTCTTACAATCGCCTGACCTTTTTTTTACCCCACTTCC--
-----------------------ACACTCGTTTTCTTTTACTACGTGAGATGAGATTGAATTTCTTTCGTGGATGGAAGT
TCCCCAC--TGT--TGAGAAGAAACTCTGTTGAGGCTGCCGTGTGTAGCT----GTTGAGGTTATTTTTGGGGCATTGCT
ACCGAGATGTGATGATGTGTGCTTGCACTTGTAGATTTTCTCTCTCGGATCGTCTTAAACAGCAGAATTTCCACGAAATG
GACAAACAAGGAGCCAAACAAA----CGCTGCCGTTGGTCCTCGTCCGTGACTGCGTTTGCTACGCGGACCATATTCTGC
CCAACGCAGGGGACATGAATGATGGTGTGTGT----CTGCGTAGTCTACTCTCATCCACAGCTCAACCACGCCATCCAAA
GAGCTGGGCATAATTTCCACGGCCTGGCCCGCGCCAAACAGGCGACCAGCCAATGGCACGTCGTATGGCGAGCAGCGCAA
CCAATGATACGCATCGTCGCAACACAGTTTTTCCACATGGACAGATCACAGGTGGACTTGACTATAACGCACAAGACGGG
CATCCATCATGAG----------------CTGCTGCTTACTTTTCCACTGCACCATTAGAAAAAAGGGCAATGCCGAACA
CACCGCGGACTTTTATTCGATGCAAATTGCCCGGTGGCGGTGGTGCAGGTCACACCCATTAATAAACAGTAGGTAAAAAG
TCTTGTCCAAAGACAGCAACAAGTCCTAATTAAACCACATCCAAACCGGGTGGGTATGCG---------GTACCGTATCC
CATCTGCTTTTCCGGACCAACAACTAGGCAAACTATAGTGAAGACAAGTCGCTTTAATACAGGGCGCCCTACCAATACCG
TGCAGCAAGT--------AGGTAAAGCCCGGATAGATAGATAAAGACACTTCTGCAAGTAGCTTCAGGCCATCTCTCGTT
TAGTTTGAAGATTTGGCAAAAACTGTC--------------------------
>chr4D_924
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-----------CGCCTACAATTTCCATTTTGCAACGTGCGGCAGCTTTCAAGGCCCCGTGCATGCACCGGAGCCACGCAT
CGACCACCGAAAGTTATCCAAAACCAGCGGCAAACCAGGACGGGAGCCAACCAAGCAGCCGCGCGACCATGAAGTGCTGG
TGCACACATGCGCCCAAGGGAGCAATGGCGACGCCGCTCTCCAGCCCTTTCTCCGTCCCCACCCTCCGCGCCCCGCTCTG
GCACGGCCGCCTCCACGCG------------CCTCTCCGAGCAAGCTCCGGCGATGACGCCGCCGCCGGGCCGGAGACGC
CGGCCCCGGTCGCCACCGCCCCCGCCGCCGACGAGGAGTTCGAGAAGCGCGTCCTGCAGCTGAAGTCCCGCGTCGGGCCC
AAGAAGCGGGGCAGCGCCGGGGCGCGCAAGAGGAAGGCCGCCGCCGAGTCCAACGCCGTCACGCTGCCGCCGGTGCCGCT
GCGGGAGCCGCGGTCCGCCCTCGGCCTGCCCGTGGAGTTCGGCTTCACCGCCTACAGCGAGCGGCTCAACGGCCTGCTGG
CCACGGTGGGCCTCACCGCGCTGCTGCTGGTGGAGCTCGGCTCCGGCAAATCCCTGGTGAAGTACCACCAGGCGCCCACG
CTGTTCCTGCAGGTGTACACGATCGTCGCGGCCGGCACCGTGTACGTCAAGTACGAGAAGGAGCGGATCAGCGTCTGGCC
GGCGCCGGCGCCGCCCAAGGCGCCGACGAGCGGCGAATGAGCTACTAGCTCTTCTTGGTTGATTTTGGTCTCGTCGGTAG
GATGCTTCCATTTTGTAATTTATTACGTACGACCTCCTG--AGTTGCCGAGCTGAGCTGTGCTGTAAAAACTGAAATTGC
TTAACCACGCGAGTTCAAAAAAAATACAGAA-----TGTTTTCTTACAGTCGCCTGACCTTTATTTTACTCCACTTCCAG
AATTGTTTCATTTTTTTTAAGGGACACTTGTTTCATTTTACTAGGTGAGATGAGATTGAATTTCTTTCGTGGATGGAAGT
TCCCCACTGTGT--TGAGAAGAAACTCTGTTGAGGCTGCCGTGTGTAGCTAGCTGTTGAGATAATTTTGGGGGCATTGCT
ACCGAGATGTG-TGATGTGTACTTGCACTTGTAGATTTTCTTTCTCGGGTCGTCTTAAACAGGAGAATTTCCACGAAATG
GACAAAAGTGGAGCCAAACAACAAACCGCTGCCGTTGGTCCTCGTCCGAGACTGCGTTTGCTACGTGGACCATATTCTGC
CCAACGCAGGGGACATCAATTATGTTGTGTGTCCTGCTGCGTAGTCTACTCTTATCCACAGCTCCACCAC--------AA
GAGCTGGGCATAATTTCCATGACCTGGCCCGCGCTAAACAGGCGACCAACCAATGGCACGTCGTAT-GCGAGCAGCGCAG
CCAATGATACGCATCGTCGCAACACAGTTTTTCCACATGGACAGATCACAGGTGGACTTGACTA--AC-----------G
CATCCATCATGAGAAATTCCCAGCAGCA---GCTGCTTACTTTTCCACTCC---ATAAGAAAAA--GGCAATGCCAAACA
CACTGCGGACTTTTATTCGATGCAAATTGCCCGGTGGCGG---TGCAGGTCACACCCATTAATAAACAGTAGGTAAAAAG
TCTGGTCCAAAGACAGCAACAAGTCCTAATTAAACCACATCCAAACCGGGTGG-----GTATGCGTACCGTACCGTATCC
CATCTGCTTCTCCAGACCAACAACTAGGCAAATTATAGCGAAGACAAGTCACTTTAATACAGGGCGCCCTACCAATACCG
TGCAAGTAGGTAAAGCCCAGCTAG---------AGAGAGAAAGAGACACTTCTGCAAGTAGCTTCAGGCCATCTCTCGTT
TAGTTTGAAGATTTGGCGAGAA-------------------------------
>SNPs
------------------------------------------------------------S-------------------
------------SS-----------S-------------------------------------S-S---S---S------
---------------------S---S---S----S----------------------------S-----------S----
----S------------S-S--S-S--S-------------S--------------------------------------
--------------------------------------S--S-S-------------SS--------------------S
----------------------------------------------S-----------------S----------S----
--------------S--------------------S----------S--------------S------------------
---------SS----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
-------S----S------------S-------S------S------------------S--------S-----------
---------S-----------------S-----------------------------------S-----SS---------
------S--------------S-----S-------------------------------------S-----------S--
-----SS-----------------------------------S---------------------------SS--------
-S----S-------------------------------------------------------S---S-------------
-------------------------------------------------S-----------------S------------
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---------------------------------------S----------------------------------------
----------------------------S---------------------------------------------------
-----------S--------------------------S-----------------------------------------
---------S----------------------------------------------------------------------
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------------------------------S-------------------------------------------------
---------------------------------S---------------------------S------------------
-------------------------------------S------------------------------------------
-------------------------------SSSSS-----S----------S-------------S-------------
---------S----------------------------------------------------------------------
------------SS-------------S--S---------------S----------------S----------------
-----------S--------------------------------------------------------------------
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-------------S-----------S----------------S------------------------------------S
SSS-SSSSS--------------S-----------------------------------S------S-------------
--------------------------------------S-S-------------------------------------S-
---------------------------SS----------------------S----------------------------
--S-----------------------------------------------------------------------------
---------------------------------------------------------S----------------------
---------------------------------------------------------------S----------------
----------------------------------SS----------------------S---------------------
----------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_182
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--ACATGGCATCCCTCATCCAG----------------------------------------------------------
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>reverse_1742
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-------------------------------------------------------------GTTTTGGTCTCGTCGGTAG
GA------------------------------------------------------------------------------
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>forward_570
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----------------------------------------------------------------------AACAAACACT
TGAGACGCCG----------------------------------------------------------------------
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>reverse_2266
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-------------------------CGTGTGTCTGCGTGGTCTAC-----------------------------------
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