Multiple sequence alignment - TraesCS4B01G198600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G198600 chr4B 100.000 2663 0 0 1 2663 427303698 427306360 0.000000e+00 4918.0
1 TraesCS4B01G198600 chr4D 92.755 1960 79 21 738 2662 346204638 346206569 0.000000e+00 2774.0
2 TraesCS4B01G198600 chr4A 93.059 1484 67 20 1190 2662 119636914 119635456 0.000000e+00 2137.0
3 TraesCS4B01G198600 chr4A 92.431 436 15 8 712 1133 119637513 119637082 8.150000e-170 606.0
4 TraesCS4B01G198600 chr4A 91.453 117 10 0 32 148 119685499 119685383 7.630000e-36 161.0
5 TraesCS4B01G198600 chr4A 91.304 46 1 2 543 587 708576909 708576952 2.860000e-05 60.2
6 TraesCS4B01G198600 chr4A 87.273 55 1 6 1 50 561158573 561158520 1.030000e-04 58.4
7 TraesCS4B01G198600 chr6B 97.436 39 0 1 1 39 466171749 466171712 6.150000e-07 65.8
8 TraesCS4B01G198600 chr6B 95.122 41 0 2 1 41 25275861 25275823 2.210000e-06 63.9
9 TraesCS4B01G198600 chr3B 95.122 41 1 1 1 41 517865775 517865814 2.210000e-06 63.9
10 TraesCS4B01G198600 chr1B 93.182 44 1 2 1 43 439619186 439619228 2.210000e-06 63.9
11 TraesCS4B01G198600 chr7B 88.679 53 2 3 536 587 665293942 665293991 7.960000e-06 62.1
12 TraesCS4B01G198600 chr5B 91.489 47 0 4 1 47 553613841 553613883 7.960000e-06 62.1
13 TraesCS4B01G198600 chr5B 88.000 50 2 3 1 50 60800641 60800596 3.700000e-04 56.5
14 TraesCS4B01G198600 chr3D 92.857 42 3 0 1 42 27062798 27062757 7.960000e-06 62.1
15 TraesCS4B01G198600 chr5A 91.111 45 3 1 1 44 650691581 650691537 2.860000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G198600 chr4B 427303698 427306360 2662 False 4918.0 4918 100.000 1 2663 1 chr4B.!!$F1 2662
1 TraesCS4B01G198600 chr4D 346204638 346206569 1931 False 2774.0 2774 92.755 738 2662 1 chr4D.!!$F1 1924
2 TraesCS4B01G198600 chr4A 119635456 119637513 2057 True 1371.5 2137 92.745 712 2662 2 chr4A.!!$R3 1950

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 424 0.030504 TGAAACATGTTGCTGTGGCG 59.969 50.0 17.58 0.0 42.25 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2263 0.035881 CTGAGCAGAAAGTGGAGGCA 59.964 55.0 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.170846 ACACCTTATATAAAGGAACGGAGG 57.829 41.667 10.67 4.52 39.81 4.30
25 26 5.071384 ACACCTTATATAAAGGAACGGAGGG 59.929 44.000 10.67 4.11 39.81 4.30
26 27 5.306160 CACCTTATATAAAGGAACGGAGGGA 59.694 44.000 10.67 0.00 39.81 4.20
27 28 5.543020 ACCTTATATAAAGGAACGGAGGGAG 59.457 44.000 10.67 0.00 39.81 4.30
28 29 5.543020 CCTTATATAAAGGAACGGAGGGAGT 59.457 44.000 0.00 0.00 39.81 3.85
29 30 6.723052 CCTTATATAAAGGAACGGAGGGAGTA 59.277 42.308 0.00 0.00 39.81 2.59
30 31 7.234166 CCTTATATAAAGGAACGGAGGGAGTAA 59.766 40.741 0.00 0.00 39.81 2.24
31 32 8.731591 TTATATAAAGGAACGGAGGGAGTAAT 57.268 34.615 0.00 0.00 0.00 1.89
32 33 9.827198 TTATATAAAGGAACGGAGGGAGTAATA 57.173 33.333 0.00 0.00 0.00 0.98
33 34 8.912614 ATATAAAGGAACGGAGGGAGTAATAT 57.087 34.615 0.00 0.00 0.00 1.28
34 35 5.970501 AAAGGAACGGAGGGAGTAATATT 57.029 39.130 0.00 0.00 0.00 1.28
35 36 8.731591 ATAAAGGAACGGAGGGAGTAATATTA 57.268 34.615 0.00 0.00 0.00 0.98
36 37 7.628501 AAAGGAACGGAGGGAGTAATATTAT 57.371 36.000 0.00 0.00 0.00 1.28
37 38 8.731591 AAAGGAACGGAGGGAGTAATATTATA 57.268 34.615 0.00 0.00 0.00 0.98
38 39 8.912614 AAGGAACGGAGGGAGTAATATTATAT 57.087 34.615 0.00 0.00 0.00 0.86
39 40 8.912614 AGGAACGGAGGGAGTAATATTATATT 57.087 34.615 2.85 2.85 0.00 1.28
44 45 9.209048 ACGGAGGGAGTAATATTATATTATGCA 57.791 33.333 7.79 0.00 0.00 3.96
45 46 9.477484 CGGAGGGAGTAATATTATATTATGCAC 57.523 37.037 7.79 5.05 0.00 4.57
63 64 4.779696 TGCACTATAAAGGACATGCATGA 58.220 39.130 32.75 9.93 38.11 3.07
64 65 5.379187 TGCACTATAAAGGACATGCATGAT 58.621 37.500 32.75 16.80 38.11 2.45
65 66 5.471116 TGCACTATAAAGGACATGCATGATC 59.529 40.000 32.75 23.19 38.11 2.92
66 67 5.471116 GCACTATAAAGGACATGCATGATCA 59.529 40.000 32.75 11.43 33.27 2.92
67 68 6.150641 GCACTATAAAGGACATGCATGATCAT 59.849 38.462 32.75 19.68 33.27 2.45
68 69 7.527457 CACTATAAAGGACATGCATGATCATG 58.473 38.462 32.75 28.04 46.86 3.07
77 78 5.257082 CATGCATGATCATGTTCCTTTCA 57.743 39.130 31.09 20.68 40.80 2.69
78 79 5.842907 CATGCATGATCATGTTCCTTTCAT 58.157 37.500 31.09 21.75 40.80 2.57
79 80 6.977213 CATGCATGATCATGTTCCTTTCATA 58.023 36.000 31.09 9.94 40.80 2.15
80 81 7.602753 CATGCATGATCATGTTCCTTTCATAT 58.397 34.615 31.09 7.34 40.80 1.78
81 82 7.591421 TGCATGATCATGTTCCTTTCATATT 57.409 32.000 31.09 0.00 40.80 1.28
82 83 8.014070 TGCATGATCATGTTCCTTTCATATTT 57.986 30.769 31.09 0.00 40.80 1.40
83 84 8.479689 TGCATGATCATGTTCCTTTCATATTTT 58.520 29.630 31.09 0.00 40.80 1.82
84 85 9.321562 GCATGATCATGTTCCTTTCATATTTTT 57.678 29.630 31.09 0.00 40.80 1.94
87 88 9.258629 TGATCATGTTCCTTTCATATTTTTCCT 57.741 29.630 0.00 0.00 0.00 3.36
90 91 9.927668 TCATGTTCCTTTCATATTTTTCCTTTC 57.072 29.630 0.00 0.00 0.00 2.62
91 92 8.863049 CATGTTCCTTTCATATTTTTCCTTTCG 58.137 33.333 0.00 0.00 0.00 3.46
92 93 6.866248 TGTTCCTTTCATATTTTTCCTTTCGC 59.134 34.615 0.00 0.00 0.00 4.70
93 94 6.582677 TCCTTTCATATTTTTCCTTTCGCA 57.417 33.333 0.00 0.00 0.00 5.10
94 95 6.987386 TCCTTTCATATTTTTCCTTTCGCAA 58.013 32.000 0.00 0.00 0.00 4.85
95 96 7.437748 TCCTTTCATATTTTTCCTTTCGCAAA 58.562 30.769 0.00 0.00 0.00 3.68
96 97 8.093927 TCCTTTCATATTTTTCCTTTCGCAAAT 58.906 29.630 0.00 0.00 0.00 2.32
97 98 8.170553 CCTTTCATATTTTTCCTTTCGCAAATG 58.829 33.333 0.00 0.00 0.00 2.32
98 99 8.600449 TTTCATATTTTTCCTTTCGCAAATGT 57.400 26.923 0.00 0.00 0.00 2.71
99 100 9.698309 TTTCATATTTTTCCTTTCGCAAATGTA 57.302 25.926 0.00 0.00 0.00 2.29
100 101 9.868277 TTCATATTTTTCCTTTCGCAAATGTAT 57.132 25.926 0.00 0.00 0.00 2.29
104 105 8.647143 ATTTTTCCTTTCGCAAATGTATATGG 57.353 30.769 0.00 0.00 0.00 2.74
105 106 5.766150 TTCCTTTCGCAAATGTATATGGG 57.234 39.130 0.00 0.00 0.00 4.00
106 107 5.042463 TCCTTTCGCAAATGTATATGGGA 57.958 39.130 0.00 0.00 36.81 4.37
107 108 5.063204 TCCTTTCGCAAATGTATATGGGAG 58.937 41.667 0.00 0.00 39.30 4.30
108 109 4.821805 CCTTTCGCAAATGTATATGGGAGT 59.178 41.667 0.00 0.00 39.30 3.85
109 110 5.995282 CCTTTCGCAAATGTATATGGGAGTA 59.005 40.000 0.00 0.00 39.30 2.59
110 111 6.655003 CCTTTCGCAAATGTATATGGGAGTAT 59.345 38.462 0.00 0.00 39.30 2.12
111 112 7.174946 CCTTTCGCAAATGTATATGGGAGTATT 59.825 37.037 0.00 0.00 39.30 1.89
112 113 8.458573 TTTCGCAAATGTATATGGGAGTATTT 57.541 30.769 0.00 0.00 39.30 1.40
113 114 9.562408 TTTCGCAAATGTATATGGGAGTATTTA 57.438 29.630 0.00 0.00 39.30 1.40
114 115 9.562408 TTCGCAAATGTATATGGGAGTATTTAA 57.438 29.630 0.00 0.00 39.30 1.52
115 116 8.995220 TCGCAAATGTATATGGGAGTATTTAAC 58.005 33.333 0.00 0.00 34.10 2.01
116 117 8.779303 CGCAAATGTATATGGGAGTATTTAACA 58.221 33.333 0.00 0.00 0.00 2.41
159 160 9.173939 CAAGTTTTCATGACTTGTCAATTAGAC 57.826 33.333 14.59 5.08 45.52 2.59
169 170 3.951979 GTCAATTAGACGGGCTGAATG 57.048 47.619 0.00 0.00 37.53 2.67
170 171 3.531538 GTCAATTAGACGGGCTGAATGA 58.468 45.455 0.00 0.00 37.53 2.57
171 172 3.557595 GTCAATTAGACGGGCTGAATGAG 59.442 47.826 0.00 0.00 37.53 2.90
172 173 2.874701 CAATTAGACGGGCTGAATGAGG 59.125 50.000 0.00 0.00 0.00 3.86
173 174 0.178068 TTAGACGGGCTGAATGAGGC 59.822 55.000 0.00 0.00 46.83 4.70
174 175 0.687757 TAGACGGGCTGAATGAGGCT 60.688 55.000 0.00 0.00 46.72 4.58
175 176 0.687757 AGACGGGCTGAATGAGGCTA 60.688 55.000 0.00 0.00 46.72 3.93
176 177 0.249657 GACGGGCTGAATGAGGCTAG 60.250 60.000 0.00 0.00 46.72 3.42
177 178 1.596477 CGGGCTGAATGAGGCTAGC 60.596 63.158 6.04 6.04 46.72 3.42
178 179 1.835693 GGGCTGAATGAGGCTAGCT 59.164 57.895 15.72 0.00 46.72 3.32
179 180 1.051812 GGGCTGAATGAGGCTAGCTA 58.948 55.000 15.72 1.83 46.72 3.32
180 181 1.001860 GGGCTGAATGAGGCTAGCTAG 59.998 57.143 16.84 16.84 46.72 3.42
181 182 1.691434 GGCTGAATGAGGCTAGCTAGT 59.309 52.381 21.62 2.88 44.09 2.57
182 183 2.288763 GGCTGAATGAGGCTAGCTAGTC 60.289 54.545 17.89 17.89 44.09 2.59
183 184 2.363680 GCTGAATGAGGCTAGCTAGTCA 59.636 50.000 26.47 20.02 33.53 3.41
184 185 3.552684 GCTGAATGAGGCTAGCTAGTCAG 60.553 52.174 26.47 24.43 35.46 3.51
185 186 3.888323 CTGAATGAGGCTAGCTAGTCAGA 59.112 47.826 26.47 12.93 34.50 3.27
186 187 4.281657 TGAATGAGGCTAGCTAGTCAGAA 58.718 43.478 26.47 12.04 0.00 3.02
187 188 4.340666 TGAATGAGGCTAGCTAGTCAGAAG 59.659 45.833 26.47 0.07 0.00 2.85
188 189 3.374042 TGAGGCTAGCTAGTCAGAAGT 57.626 47.619 26.47 5.92 0.00 3.01
189 190 3.020274 TGAGGCTAGCTAGTCAGAAGTG 58.980 50.000 26.47 0.00 0.00 3.16
190 191 3.283751 GAGGCTAGCTAGTCAGAAGTGA 58.716 50.000 26.47 0.00 0.00 3.41
191 192 3.697045 GAGGCTAGCTAGTCAGAAGTGAA 59.303 47.826 26.47 0.00 33.27 3.18
192 193 4.090090 AGGCTAGCTAGTCAGAAGTGAAA 58.910 43.478 26.47 0.00 33.27 2.69
193 194 4.081917 AGGCTAGCTAGTCAGAAGTGAAAC 60.082 45.833 26.47 3.12 33.27 2.78
194 195 4.322049 GGCTAGCTAGTCAGAAGTGAAACA 60.322 45.833 20.50 0.00 41.43 2.83
195 196 5.415221 GCTAGCTAGTCAGAAGTGAAACAT 58.585 41.667 21.62 0.00 41.43 2.71
196 197 5.872070 GCTAGCTAGTCAGAAGTGAAACATT 59.128 40.000 21.62 0.00 41.43 2.71
197 198 6.183360 GCTAGCTAGTCAGAAGTGAAACATTG 60.183 42.308 21.62 0.00 41.43 2.82
198 199 5.615289 AGCTAGTCAGAAGTGAAACATTGT 58.385 37.500 0.00 0.00 41.43 2.71
199 200 6.058183 AGCTAGTCAGAAGTGAAACATTGTT 58.942 36.000 0.00 0.00 41.43 2.83
200 201 7.217200 AGCTAGTCAGAAGTGAAACATTGTTA 58.783 34.615 1.76 0.00 41.43 2.41
201 202 7.715249 AGCTAGTCAGAAGTGAAACATTGTTAA 59.285 33.333 1.76 0.00 41.43 2.01
202 203 7.798982 GCTAGTCAGAAGTGAAACATTGTTAAC 59.201 37.037 1.76 0.00 41.43 2.01
203 204 7.027778 AGTCAGAAGTGAAACATTGTTAACC 57.972 36.000 1.76 0.00 41.43 2.85
204 205 6.828785 AGTCAGAAGTGAAACATTGTTAACCT 59.171 34.615 1.76 0.00 41.43 3.50
205 206 7.990886 AGTCAGAAGTGAAACATTGTTAACCTA 59.009 33.333 1.76 0.00 41.43 3.08
206 207 8.068380 GTCAGAAGTGAAACATTGTTAACCTAC 58.932 37.037 1.76 0.00 41.43 3.18
207 208 7.771361 TCAGAAGTGAAACATTGTTAACCTACA 59.229 33.333 1.76 0.00 41.43 2.74
208 209 8.402472 CAGAAGTGAAACATTGTTAACCTACAA 58.598 33.333 1.76 0.00 41.43 2.41
209 210 9.131791 AGAAGTGAAACATTGTTAACCTACAAT 57.868 29.630 1.76 0.00 46.73 2.71
210 211 9.394477 GAAGTGAAACATTGTTAACCTACAATC 57.606 33.333 1.76 0.00 44.64 2.67
211 212 8.691661 AGTGAAACATTGTTAACCTACAATCT 57.308 30.769 1.76 0.00 44.64 2.40
212 213 9.131791 AGTGAAACATTGTTAACCTACAATCTT 57.868 29.630 1.76 0.00 44.64 2.40
213 214 9.744468 GTGAAACATTGTTAACCTACAATCTTT 57.256 29.630 1.76 0.00 44.64 2.52
239 240 9.664332 TTATATAGTACGAGTACATCCTTCCTC 57.336 37.037 14.83 0.00 38.48 3.71
240 241 3.553904 AGTACGAGTACATCCTTCCTCC 58.446 50.000 14.83 0.00 38.48 4.30
241 242 1.390565 ACGAGTACATCCTTCCTCCG 58.609 55.000 0.00 0.00 0.00 4.63
242 243 0.669077 CGAGTACATCCTTCCTCCGG 59.331 60.000 0.00 0.00 0.00 5.14
243 244 1.749635 CGAGTACATCCTTCCTCCGGA 60.750 57.143 2.93 2.93 34.52 5.14
244 245 2.385803 GAGTACATCCTTCCTCCGGAA 58.614 52.381 5.23 0.00 39.66 4.30
245 246 2.966516 GAGTACATCCTTCCTCCGGAAT 59.033 50.000 5.23 0.00 41.23 3.01
246 247 3.385115 AGTACATCCTTCCTCCGGAATT 58.615 45.455 5.23 0.00 41.23 2.17
247 248 4.553678 AGTACATCCTTCCTCCGGAATTA 58.446 43.478 5.23 0.00 41.23 1.40
248 249 4.966805 AGTACATCCTTCCTCCGGAATTAA 59.033 41.667 5.23 0.00 41.23 1.40
249 250 4.152284 ACATCCTTCCTCCGGAATTAAC 57.848 45.455 5.23 0.00 41.23 2.01
250 251 3.780850 ACATCCTTCCTCCGGAATTAACT 59.219 43.478 5.23 0.00 41.23 2.24
251 252 3.906720 TCCTTCCTCCGGAATTAACTG 57.093 47.619 5.23 0.00 41.23 3.16
252 253 2.093128 TCCTTCCTCCGGAATTAACTGC 60.093 50.000 5.23 0.00 41.23 4.40
253 254 2.289565 CTTCCTCCGGAATTAACTGCC 58.710 52.381 5.23 0.00 41.23 4.85
254 255 0.544697 TCCTCCGGAATTAACTGCCC 59.455 55.000 5.23 0.00 0.00 5.36
255 256 0.546598 CCTCCGGAATTAACTGCCCT 59.453 55.000 5.23 0.00 0.00 5.19
256 257 1.668419 CTCCGGAATTAACTGCCCTG 58.332 55.000 5.23 0.00 0.00 4.45
257 258 1.209504 CTCCGGAATTAACTGCCCTGA 59.790 52.381 5.23 0.00 0.00 3.86
258 259 1.631388 TCCGGAATTAACTGCCCTGAA 59.369 47.619 0.00 0.00 0.00 3.02
259 260 2.040545 TCCGGAATTAACTGCCCTGAAA 59.959 45.455 0.00 0.00 0.00 2.69
260 261 3.023832 CCGGAATTAACTGCCCTGAAAT 58.976 45.455 0.00 0.00 0.00 2.17
261 262 3.181487 CCGGAATTAACTGCCCTGAAATG 60.181 47.826 0.00 0.00 0.00 2.32
262 263 3.694072 CGGAATTAACTGCCCTGAAATGA 59.306 43.478 0.00 0.00 0.00 2.57
263 264 4.201950 CGGAATTAACTGCCCTGAAATGAG 60.202 45.833 0.00 0.00 0.00 2.90
264 265 4.706962 GGAATTAACTGCCCTGAAATGAGT 59.293 41.667 0.00 0.00 0.00 3.41
265 266 5.185828 GGAATTAACTGCCCTGAAATGAGTT 59.814 40.000 0.00 0.00 0.00 3.01
266 267 6.295292 GGAATTAACTGCCCTGAAATGAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
267 268 7.093945 GGAATTAACTGCCCTGAAATGAGTTTA 60.094 37.037 0.00 0.00 0.00 2.01
268 269 7.961326 ATTAACTGCCCTGAAATGAGTTTAT 57.039 32.000 0.00 0.00 0.00 1.40
269 270 5.904362 AACTGCCCTGAAATGAGTTTATC 57.096 39.130 0.00 0.00 0.00 1.75
270 271 4.922206 ACTGCCCTGAAATGAGTTTATCA 58.078 39.130 0.00 0.00 43.70 2.15
271 272 4.702131 ACTGCCCTGAAATGAGTTTATCAC 59.298 41.667 0.00 0.00 41.91 3.06
272 273 4.661222 TGCCCTGAAATGAGTTTATCACA 58.339 39.130 0.00 0.00 41.91 3.58
273 274 5.076182 TGCCCTGAAATGAGTTTATCACAA 58.924 37.500 0.00 0.00 41.91 3.33
274 275 5.048083 TGCCCTGAAATGAGTTTATCACAAC 60.048 40.000 0.00 0.00 41.91 3.32
275 276 5.183904 GCCCTGAAATGAGTTTATCACAACT 59.816 40.000 0.00 0.00 41.91 3.16
276 277 6.615088 CCCTGAAATGAGTTTATCACAACTG 58.385 40.000 0.00 0.00 41.91 3.16
277 278 6.088824 CCTGAAATGAGTTTATCACAACTGC 58.911 40.000 0.00 0.00 41.91 4.40
278 279 6.012658 TGAAATGAGTTTATCACAACTGCC 57.987 37.500 0.00 0.00 41.91 4.85
279 280 4.685169 AATGAGTTTATCACAACTGCCG 57.315 40.909 0.00 0.00 41.91 5.69
280 281 1.804151 TGAGTTTATCACAACTGCCGC 59.196 47.619 0.00 0.00 37.11 6.53
281 282 2.076863 GAGTTTATCACAACTGCCGCT 58.923 47.619 0.00 0.00 37.11 5.52
282 283 1.806542 AGTTTATCACAACTGCCGCTG 59.193 47.619 0.00 0.00 35.57 5.18
283 284 1.804151 GTTTATCACAACTGCCGCTGA 59.196 47.619 4.02 0.00 0.00 4.26
284 285 2.177394 TTATCACAACTGCCGCTGAA 57.823 45.000 4.02 0.00 0.00 3.02
285 286 2.177394 TATCACAACTGCCGCTGAAA 57.823 45.000 4.02 0.00 0.00 2.69
286 287 1.538047 ATCACAACTGCCGCTGAAAT 58.462 45.000 4.02 0.00 0.00 2.17
287 288 0.592637 TCACAACTGCCGCTGAAATG 59.407 50.000 4.02 3.19 0.00 2.32
288 289 0.592637 CACAACTGCCGCTGAAATGA 59.407 50.000 4.02 0.00 0.00 2.57
289 290 1.001487 CACAACTGCCGCTGAAATGAA 60.001 47.619 4.02 0.00 0.00 2.57
290 291 1.680735 ACAACTGCCGCTGAAATGAAA 59.319 42.857 4.02 0.00 0.00 2.69
291 292 2.297033 ACAACTGCCGCTGAAATGAAAT 59.703 40.909 4.02 0.00 0.00 2.17
292 293 2.642139 ACTGCCGCTGAAATGAAATG 57.358 45.000 4.02 0.00 0.00 2.32
293 294 2.161855 ACTGCCGCTGAAATGAAATGA 58.838 42.857 4.02 0.00 0.00 2.57
294 295 2.163010 ACTGCCGCTGAAATGAAATGAG 59.837 45.455 4.02 0.00 0.00 2.90
295 296 2.161855 TGCCGCTGAAATGAAATGAGT 58.838 42.857 0.00 0.00 0.00 3.41
296 297 2.095110 TGCCGCTGAAATGAAATGAGTG 60.095 45.455 0.00 0.00 0.00 3.51
297 298 2.095059 GCCGCTGAAATGAAATGAGTGT 60.095 45.455 0.00 0.00 0.00 3.55
298 299 3.126858 GCCGCTGAAATGAAATGAGTGTA 59.873 43.478 0.00 0.00 0.00 2.90
299 300 4.201950 GCCGCTGAAATGAAATGAGTGTAT 60.202 41.667 0.00 0.00 0.00 2.29
300 301 5.007626 GCCGCTGAAATGAAATGAGTGTATA 59.992 40.000 0.00 0.00 0.00 1.47
301 302 6.458206 GCCGCTGAAATGAAATGAGTGTATAA 60.458 38.462 0.00 0.00 0.00 0.98
302 303 7.642669 CCGCTGAAATGAAATGAGTGTATAAT 58.357 34.615 0.00 0.00 0.00 1.28
303 304 8.131100 CCGCTGAAATGAAATGAGTGTATAATT 58.869 33.333 0.00 0.00 0.00 1.40
304 305 9.507280 CGCTGAAATGAAATGAGTGTATAATTT 57.493 29.630 0.00 0.00 0.00 1.82
313 314 9.893305 GAAATGAGTGTATAATTTAATTCCGGG 57.107 33.333 0.00 0.00 0.00 5.73
314 315 6.870971 TGAGTGTATAATTTAATTCCGGGC 57.129 37.500 0.00 0.00 0.00 6.13
315 316 5.467399 TGAGTGTATAATTTAATTCCGGGCG 59.533 40.000 0.00 0.00 0.00 6.13
316 317 4.758165 AGTGTATAATTTAATTCCGGGCGG 59.242 41.667 0.00 0.00 0.00 6.13
317 318 4.756135 GTGTATAATTTAATTCCGGGCGGA 59.244 41.667 0.00 0.00 43.52 5.54
318 319 4.998672 TGTATAATTTAATTCCGGGCGGAG 59.001 41.667 0.00 0.00 46.06 4.63
319 320 1.687563 AATTTAATTCCGGGCGGAGG 58.312 50.000 0.00 0.00 46.06 4.30
320 321 0.179001 ATTTAATTCCGGGCGGAGGG 60.179 55.000 0.00 0.00 46.06 4.30
321 322 1.273269 TTTAATTCCGGGCGGAGGGA 61.273 55.000 0.00 0.00 46.06 4.20
322 323 1.692173 TTAATTCCGGGCGGAGGGAG 61.692 60.000 0.00 0.00 46.06 4.30
323 324 2.884179 TAATTCCGGGCGGAGGGAGT 62.884 60.000 0.00 0.00 46.06 3.85
327 328 3.702048 CGGGCGGAGGGAGTTGAA 61.702 66.667 0.00 0.00 0.00 2.69
328 329 2.754375 GGGCGGAGGGAGTTGAAA 59.246 61.111 0.00 0.00 0.00 2.69
329 330 1.303282 GGGCGGAGGGAGTTGAAAT 59.697 57.895 0.00 0.00 0.00 2.17
330 331 1.032114 GGGCGGAGGGAGTTGAAATG 61.032 60.000 0.00 0.00 0.00 2.32
331 332 0.035439 GGCGGAGGGAGTTGAAATGA 60.035 55.000 0.00 0.00 0.00 2.57
332 333 1.613255 GGCGGAGGGAGTTGAAATGAA 60.613 52.381 0.00 0.00 0.00 2.57
333 334 2.369394 GCGGAGGGAGTTGAAATGAAT 58.631 47.619 0.00 0.00 0.00 2.57
334 335 2.098117 GCGGAGGGAGTTGAAATGAATG 59.902 50.000 0.00 0.00 0.00 2.67
335 336 3.347216 CGGAGGGAGTTGAAATGAATGT 58.653 45.455 0.00 0.00 0.00 2.71
336 337 4.513442 CGGAGGGAGTTGAAATGAATGTA 58.487 43.478 0.00 0.00 0.00 2.29
337 338 5.126067 CGGAGGGAGTTGAAATGAATGTAT 58.874 41.667 0.00 0.00 0.00 2.29
338 339 6.288294 CGGAGGGAGTTGAAATGAATGTATA 58.712 40.000 0.00 0.00 0.00 1.47
339 340 6.765989 CGGAGGGAGTTGAAATGAATGTATAA 59.234 38.462 0.00 0.00 0.00 0.98
340 341 7.445402 CGGAGGGAGTTGAAATGAATGTATAAT 59.555 37.037 0.00 0.00 0.00 1.28
341 342 9.136323 GGAGGGAGTTGAAATGAATGTATAATT 57.864 33.333 0.00 0.00 0.00 1.40
354 355 8.090250 TGAATGTATAATTTAATTCCGGACGG 57.910 34.615 1.83 3.96 0.00 4.79
355 356 7.932491 TGAATGTATAATTTAATTCCGGACGGA 59.068 33.333 1.83 9.76 43.52 4.69
356 357 7.900782 ATGTATAATTTAATTCCGGACGGAG 57.099 36.000 13.64 0.00 46.06 4.63
357 358 6.225318 TGTATAATTTAATTCCGGACGGAGG 58.775 40.000 13.64 0.00 46.06 4.30
358 359 2.632987 ATTTAATTCCGGACGGAGGG 57.367 50.000 13.64 0.00 46.06 4.30
359 360 1.570803 TTTAATTCCGGACGGAGGGA 58.429 50.000 13.64 0.00 46.06 4.20
360 361 1.117150 TTAATTCCGGACGGAGGGAG 58.883 55.000 13.64 0.00 46.06 4.30
361 362 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
362 363 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
363 364 0.754587 ATTCCGGACGGAGGGAGTAC 60.755 60.000 13.64 0.00 46.06 2.73
364 365 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
365 366 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
366 367 0.107017 CCGGACGGAGGGAGTACTAA 60.107 60.000 4.40 0.00 37.50 2.24
367 368 1.020437 CGGACGGAGGGAGTACTAAC 58.980 60.000 0.00 0.00 0.00 2.34
368 369 1.407989 CGGACGGAGGGAGTACTAACT 60.408 57.143 0.00 0.00 39.21 2.24
369 370 2.158900 CGGACGGAGGGAGTACTAACTA 60.159 54.545 0.00 0.00 35.56 2.24
370 371 3.495806 CGGACGGAGGGAGTACTAACTAT 60.496 52.174 0.00 0.00 35.56 2.12
371 372 4.262635 CGGACGGAGGGAGTACTAACTATA 60.263 50.000 0.00 0.00 35.56 1.31
372 373 5.000591 GGACGGAGGGAGTACTAACTATAC 58.999 50.000 0.00 0.00 35.56 1.47
373 374 4.636249 ACGGAGGGAGTACTAACTATACG 58.364 47.826 0.00 5.81 35.56 3.06
374 375 4.345257 ACGGAGGGAGTACTAACTATACGA 59.655 45.833 16.88 0.00 35.56 3.43
375 376 4.928615 CGGAGGGAGTACTAACTATACGAG 59.071 50.000 0.00 0.00 35.56 4.18
376 377 5.510520 CGGAGGGAGTACTAACTATACGAGT 60.511 48.000 0.00 0.00 41.56 4.18
377 378 5.931724 GGAGGGAGTACTAACTATACGAGTC 59.068 48.000 0.00 0.00 37.44 3.36
378 379 6.239572 GGAGGGAGTACTAACTATACGAGTCT 60.240 46.154 0.00 0.00 37.44 3.24
379 380 7.135591 AGGGAGTACTAACTATACGAGTCTT 57.864 40.000 0.00 0.00 37.44 3.01
380 381 6.991531 AGGGAGTACTAACTATACGAGTCTTG 59.008 42.308 0.00 0.00 37.44 3.02
381 382 6.765512 GGGAGTACTAACTATACGAGTCTTGT 59.234 42.308 0.00 0.00 37.44 3.16
382 383 7.254727 GGGAGTACTAACTATACGAGTCTTGTG 60.255 44.444 2.68 0.00 37.44 3.33
383 384 7.254727 GGAGTACTAACTATACGAGTCTTGTGG 60.255 44.444 2.68 0.00 37.44 4.17
384 385 7.108847 AGTACTAACTATACGAGTCTTGTGGT 58.891 38.462 2.68 0.00 37.44 4.16
385 386 6.830873 ACTAACTATACGAGTCTTGTGGTT 57.169 37.500 2.68 7.80 37.44 3.67
386 387 7.224522 ACTAACTATACGAGTCTTGTGGTTT 57.775 36.000 2.68 0.00 37.44 3.27
387 388 8.340618 ACTAACTATACGAGTCTTGTGGTTTA 57.659 34.615 2.68 0.00 37.44 2.01
388 389 8.239998 ACTAACTATACGAGTCTTGTGGTTTAC 58.760 37.037 2.68 0.00 37.44 2.01
389 390 5.958955 ACTATACGAGTCTTGTGGTTTACC 58.041 41.667 2.68 0.00 29.95 2.85
390 391 5.713861 ACTATACGAGTCTTGTGGTTTACCT 59.286 40.000 2.68 0.00 29.95 3.08
391 392 3.832615 ACGAGTCTTGTGGTTTACCTT 57.167 42.857 0.00 0.00 36.82 3.50
392 393 4.146745 ACGAGTCTTGTGGTTTACCTTT 57.853 40.909 0.00 0.00 36.82 3.11
393 394 5.280654 ACGAGTCTTGTGGTTTACCTTTA 57.719 39.130 0.00 0.00 36.82 1.85
394 395 5.295152 ACGAGTCTTGTGGTTTACCTTTAG 58.705 41.667 0.00 0.00 36.82 1.85
395 396 5.163374 ACGAGTCTTGTGGTTTACCTTTAGT 60.163 40.000 0.00 0.00 36.82 2.24
396 397 5.404667 CGAGTCTTGTGGTTTACCTTTAGTC 59.595 44.000 0.00 0.00 36.82 2.59
397 398 6.496144 AGTCTTGTGGTTTACCTTTAGTCT 57.504 37.500 0.00 0.00 36.82 3.24
398 399 6.522946 AGTCTTGTGGTTTACCTTTAGTCTC 58.477 40.000 0.00 0.00 36.82 3.36
399 400 6.326843 AGTCTTGTGGTTTACCTTTAGTCTCT 59.673 38.462 0.00 0.00 36.82 3.10
400 401 6.424207 GTCTTGTGGTTTACCTTTAGTCTCTG 59.576 42.308 0.00 0.00 36.82 3.35
401 402 5.881923 TGTGGTTTACCTTTAGTCTCTGT 57.118 39.130 0.00 0.00 36.82 3.41
402 403 6.982160 TGTGGTTTACCTTTAGTCTCTGTA 57.018 37.500 0.00 0.00 36.82 2.74
403 404 7.364149 TGTGGTTTACCTTTAGTCTCTGTAA 57.636 36.000 0.00 0.00 36.82 2.41
404 405 7.970102 TGTGGTTTACCTTTAGTCTCTGTAAT 58.030 34.615 0.00 0.00 36.82 1.89
405 406 7.876068 TGTGGTTTACCTTTAGTCTCTGTAATG 59.124 37.037 0.00 0.00 36.82 1.90
406 407 8.092687 GTGGTTTACCTTTAGTCTCTGTAATGA 58.907 37.037 0.00 0.00 36.82 2.57
407 408 8.653191 TGGTTTACCTTTAGTCTCTGTAATGAA 58.347 33.333 0.00 0.00 36.82 2.57
408 409 9.498176 GGTTTACCTTTAGTCTCTGTAATGAAA 57.502 33.333 0.00 0.00 0.00 2.69
412 413 8.553459 ACCTTTAGTCTCTGTAATGAAACATG 57.447 34.615 0.00 0.00 0.00 3.21
413 414 8.157476 ACCTTTAGTCTCTGTAATGAAACATGT 58.843 33.333 0.00 0.00 0.00 3.21
414 415 9.003658 CCTTTAGTCTCTGTAATGAAACATGTT 57.996 33.333 4.92 4.92 0.00 2.71
415 416 9.817365 CTTTAGTCTCTGTAATGAAACATGTTG 57.183 33.333 12.82 0.00 0.00 3.33
416 417 6.246420 AGTCTCTGTAATGAAACATGTTGC 57.754 37.500 12.82 11.28 0.00 4.17
417 418 6.000219 AGTCTCTGTAATGAAACATGTTGCT 59.000 36.000 17.58 0.00 0.00 3.91
418 419 6.072838 AGTCTCTGTAATGAAACATGTTGCTG 60.073 38.462 17.58 1.11 0.00 4.41
419 420 5.764686 TCTCTGTAATGAAACATGTTGCTGT 59.235 36.000 17.58 7.81 0.00 4.40
420 421 5.761003 TCTGTAATGAAACATGTTGCTGTG 58.239 37.500 17.58 2.91 0.00 3.66
421 422 4.869215 TGTAATGAAACATGTTGCTGTGG 58.131 39.130 17.58 0.00 0.00 4.17
422 423 2.443887 ATGAAACATGTTGCTGTGGC 57.556 45.000 17.58 0.63 39.26 5.01
423 424 0.030504 TGAAACATGTTGCTGTGGCG 59.969 50.000 17.58 0.00 42.25 5.69
424 425 1.277495 GAAACATGTTGCTGTGGCGC 61.277 55.000 12.82 0.00 42.25 6.53
425 426 2.697992 AAACATGTTGCTGTGGCGCC 62.698 55.000 22.73 22.73 42.25 6.53
426 427 3.367743 CATGTTGCTGTGGCGCCT 61.368 61.111 29.70 0.00 42.25 5.52
427 428 3.058160 ATGTTGCTGTGGCGCCTC 61.058 61.111 29.70 25.38 42.25 4.70
430 431 3.997397 TTGCTGTGGCGCCTCGTA 61.997 61.111 29.70 16.39 42.25 3.43
431 432 3.932580 TTGCTGTGGCGCCTCGTAG 62.933 63.158 29.70 18.84 42.25 3.51
433 434 3.760035 CTGTGGCGCCTCGTAGGT 61.760 66.667 29.70 0.00 37.80 3.08
434 435 2.361483 TGTGGCGCCTCGTAGGTA 60.361 61.111 29.70 3.63 37.80 3.08
435 436 2.103736 GTGGCGCCTCGTAGGTAC 59.896 66.667 29.70 11.08 37.80 3.34
436 437 2.361483 TGGCGCCTCGTAGGTACA 60.361 61.111 29.70 0.00 37.80 2.90
437 438 1.755395 TGGCGCCTCGTAGGTACAT 60.755 57.895 29.70 0.00 37.80 2.29
438 439 1.299926 GGCGCCTCGTAGGTACATG 60.300 63.158 22.15 0.00 37.80 3.21
439 440 1.436336 GCGCCTCGTAGGTACATGT 59.564 57.895 2.69 2.69 37.80 3.21
440 441 0.870307 GCGCCTCGTAGGTACATGTG 60.870 60.000 9.11 0.00 37.80 3.21
441 442 0.870307 CGCCTCGTAGGTACATGTGC 60.870 60.000 9.11 7.07 37.80 4.57
442 443 0.174845 GCCTCGTAGGTACATGTGCA 59.825 55.000 16.11 0.00 37.80 4.57
443 444 1.202533 GCCTCGTAGGTACATGTGCAT 60.203 52.381 16.11 11.40 37.80 3.96
444 445 2.743938 CCTCGTAGGTACATGTGCATC 58.256 52.381 16.11 4.52 0.00 3.91
445 446 2.100749 CCTCGTAGGTACATGTGCATCA 59.899 50.000 16.11 0.00 0.00 3.07
446 447 3.116300 CTCGTAGGTACATGTGCATCAC 58.884 50.000 16.11 8.64 34.56 3.06
447 448 2.758423 TCGTAGGTACATGTGCATCACT 59.242 45.455 16.11 6.02 35.11 3.41
448 449 2.860136 CGTAGGTACATGTGCATCACTG 59.140 50.000 16.11 3.64 35.11 3.66
449 450 3.676049 CGTAGGTACATGTGCATCACTGT 60.676 47.826 16.11 0.00 35.11 3.55
450 451 3.423539 AGGTACATGTGCATCACTGTT 57.576 42.857 16.11 0.00 35.11 3.16
451 452 3.754965 AGGTACATGTGCATCACTGTTT 58.245 40.909 16.11 0.00 35.11 2.83
452 453 4.144297 AGGTACATGTGCATCACTGTTTT 58.856 39.130 16.11 0.00 35.11 2.43
453 454 4.216257 AGGTACATGTGCATCACTGTTTTC 59.784 41.667 16.11 0.00 35.11 2.29
454 455 3.648339 ACATGTGCATCACTGTTTTCC 57.352 42.857 0.00 0.00 35.11 3.13
455 456 3.225104 ACATGTGCATCACTGTTTTCCT 58.775 40.909 0.00 0.00 35.11 3.36
456 457 3.254166 ACATGTGCATCACTGTTTTCCTC 59.746 43.478 0.00 0.00 35.11 3.71
457 458 2.229792 TGTGCATCACTGTTTTCCTCC 58.770 47.619 0.00 0.00 35.11 4.30
458 459 1.541588 GTGCATCACTGTTTTCCTCCC 59.458 52.381 0.00 0.00 0.00 4.30
459 460 1.425066 TGCATCACTGTTTTCCTCCCT 59.575 47.619 0.00 0.00 0.00 4.20
460 461 2.087646 GCATCACTGTTTTCCTCCCTC 58.912 52.381 0.00 0.00 0.00 4.30
461 462 2.716217 CATCACTGTTTTCCTCCCTCC 58.284 52.381 0.00 0.00 0.00 4.30
462 463 2.118403 TCACTGTTTTCCTCCCTCCT 57.882 50.000 0.00 0.00 0.00 3.69
463 464 1.699634 TCACTGTTTTCCTCCCTCCTG 59.300 52.381 0.00 0.00 0.00 3.86
464 465 1.421646 CACTGTTTTCCTCCCTCCTGT 59.578 52.381 0.00 0.00 0.00 4.00
465 466 1.700186 ACTGTTTTCCTCCCTCCTGTC 59.300 52.381 0.00 0.00 0.00 3.51
466 467 1.699634 CTGTTTTCCTCCCTCCTGTCA 59.300 52.381 0.00 0.00 0.00 3.58
467 468 2.106511 CTGTTTTCCTCCCTCCTGTCAA 59.893 50.000 0.00 0.00 0.00 3.18
468 469 2.512056 TGTTTTCCTCCCTCCTGTCAAA 59.488 45.455 0.00 0.00 0.00 2.69
469 470 3.053245 TGTTTTCCTCCCTCCTGTCAAAA 60.053 43.478 0.00 0.00 0.00 2.44
470 471 4.152647 GTTTTCCTCCCTCCTGTCAAAAT 58.847 43.478 0.00 0.00 0.00 1.82
471 472 5.163034 TGTTTTCCTCCCTCCTGTCAAAATA 60.163 40.000 0.00 0.00 0.00 1.40
472 473 5.796502 TTTCCTCCCTCCTGTCAAAATAT 57.203 39.130 0.00 0.00 0.00 1.28
473 474 4.778213 TCCTCCCTCCTGTCAAAATATG 57.222 45.455 0.00 0.00 0.00 1.78
474 475 4.370776 TCCTCCCTCCTGTCAAAATATGA 58.629 43.478 0.00 0.00 35.05 2.15
475 476 4.788075 TCCTCCCTCCTGTCAAAATATGAA 59.212 41.667 0.00 0.00 40.50 2.57
476 477 5.433051 TCCTCCCTCCTGTCAAAATATGAAT 59.567 40.000 0.00 0.00 40.50 2.57
477 478 5.533903 CCTCCCTCCTGTCAAAATATGAATG 59.466 44.000 0.00 0.00 40.50 2.67
478 479 6.325993 TCCCTCCTGTCAAAATATGAATGA 57.674 37.500 0.00 0.00 40.50 2.57
479 480 6.914665 TCCCTCCTGTCAAAATATGAATGAT 58.085 36.000 0.00 0.00 40.50 2.45
480 481 7.356680 TCCCTCCTGTCAAAATATGAATGATT 58.643 34.615 0.00 0.00 40.50 2.57
481 482 7.503566 TCCCTCCTGTCAAAATATGAATGATTC 59.496 37.037 0.00 0.00 40.50 2.52
482 483 7.504911 CCCTCCTGTCAAAATATGAATGATTCT 59.495 37.037 6.73 0.00 40.50 2.40
483 484 9.565090 CCTCCTGTCAAAATATGAATGATTCTA 57.435 33.333 6.73 0.00 40.50 2.10
497 498 8.924511 TGAATGATTCTACTTCTTTTCTGGTT 57.075 30.769 6.73 0.00 0.00 3.67
498 499 9.003658 TGAATGATTCTACTTCTTTTCTGGTTC 57.996 33.333 6.73 0.00 0.00 3.62
499 500 8.924511 AATGATTCTACTTCTTTTCTGGTTCA 57.075 30.769 0.00 0.00 0.00 3.18
500 501 8.924511 ATGATTCTACTTCTTTTCTGGTTCAA 57.075 30.769 0.00 0.00 0.00 2.69
501 502 8.746052 TGATTCTACTTCTTTTCTGGTTCAAA 57.254 30.769 0.00 0.00 0.00 2.69
502 503 8.621286 TGATTCTACTTCTTTTCTGGTTCAAAC 58.379 33.333 0.00 0.00 0.00 2.93
503 504 8.753497 ATTCTACTTCTTTTCTGGTTCAAACT 57.247 30.769 0.00 0.00 0.00 2.66
504 505 8.575649 TTCTACTTCTTTTCTGGTTCAAACTT 57.424 30.769 0.00 0.00 0.00 2.66
505 506 8.575649 TCTACTTCTTTTCTGGTTCAAACTTT 57.424 30.769 0.00 0.00 0.00 2.66
506 507 9.020731 TCTACTTCTTTTCTGGTTCAAACTTTT 57.979 29.630 0.00 0.00 0.00 2.27
507 508 9.639601 CTACTTCTTTTCTGGTTCAAACTTTTT 57.360 29.630 0.00 0.00 0.00 1.94
580 581 2.444895 GAGGATGACTCCCGGCCT 60.445 66.667 0.00 0.00 43.21 5.19
581 582 2.041265 AGGATGACTCCCGGCCTT 59.959 61.111 0.00 0.00 43.21 4.35
582 583 1.616628 AGGATGACTCCCGGCCTTT 60.617 57.895 0.00 0.00 43.21 3.11
583 584 1.452108 GGATGACTCCCGGCCTTTG 60.452 63.158 0.00 0.00 35.28 2.77
584 585 2.044946 ATGACTCCCGGCCTTTGC 60.045 61.111 0.00 0.00 0.00 3.68
585 586 2.819984 GATGACTCCCGGCCTTTGCA 62.820 60.000 0.00 0.00 40.13 4.08
586 587 2.044946 GACTCCCGGCCTTTGCAT 60.045 61.111 0.00 0.00 40.13 3.96
587 588 2.361610 ACTCCCGGCCTTTGCATG 60.362 61.111 0.00 0.00 40.13 4.06
588 589 3.830192 CTCCCGGCCTTTGCATGC 61.830 66.667 11.82 11.82 40.13 4.06
589 590 4.365111 TCCCGGCCTTTGCATGCT 62.365 61.111 20.33 0.00 40.13 3.79
590 591 3.384532 CCCGGCCTTTGCATGCTT 61.385 61.111 20.33 0.00 40.13 3.91
591 592 2.051518 CCCGGCCTTTGCATGCTTA 61.052 57.895 20.33 3.93 40.13 3.09
592 593 1.434696 CCGGCCTTTGCATGCTTAG 59.565 57.895 20.33 15.06 40.13 2.18
593 594 1.315257 CCGGCCTTTGCATGCTTAGT 61.315 55.000 20.33 0.00 40.13 2.24
594 595 0.179156 CGGCCTTTGCATGCTTAGTG 60.179 55.000 20.33 10.51 40.13 2.74
595 596 0.890683 GGCCTTTGCATGCTTAGTGT 59.109 50.000 20.33 0.00 40.13 3.55
596 597 1.135286 GGCCTTTGCATGCTTAGTGTC 60.135 52.381 20.33 7.85 40.13 3.67
597 598 1.541147 GCCTTTGCATGCTTAGTGTCA 59.459 47.619 20.33 0.00 37.47 3.58
598 599 2.030007 GCCTTTGCATGCTTAGTGTCAA 60.030 45.455 20.33 0.00 37.47 3.18
599 600 3.552684 GCCTTTGCATGCTTAGTGTCAAA 60.553 43.478 20.33 7.29 37.47 2.69
600 601 4.813027 CCTTTGCATGCTTAGTGTCAAAT 58.187 39.130 20.33 0.00 0.00 2.32
601 602 5.232463 CCTTTGCATGCTTAGTGTCAAATT 58.768 37.500 20.33 0.00 0.00 1.82
602 603 6.389091 CCTTTGCATGCTTAGTGTCAAATTA 58.611 36.000 20.33 0.00 0.00 1.40
603 604 6.529125 CCTTTGCATGCTTAGTGTCAAATTAG 59.471 38.462 20.33 0.00 0.00 1.73
604 605 6.573664 TTGCATGCTTAGTGTCAAATTAGT 57.426 33.333 20.33 0.00 0.00 2.24
605 606 6.573664 TGCATGCTTAGTGTCAAATTAGTT 57.426 33.333 20.33 0.00 0.00 2.24
606 607 6.980593 TGCATGCTTAGTGTCAAATTAGTTT 58.019 32.000 20.33 0.00 0.00 2.66
607 608 7.432869 TGCATGCTTAGTGTCAAATTAGTTTT 58.567 30.769 20.33 0.00 0.00 2.43
608 609 7.594758 TGCATGCTTAGTGTCAAATTAGTTTTC 59.405 33.333 20.33 0.00 0.00 2.29
609 610 7.809806 GCATGCTTAGTGTCAAATTAGTTTTCT 59.190 33.333 11.37 0.00 0.00 2.52
610 611 9.683069 CATGCTTAGTGTCAAATTAGTTTTCTT 57.317 29.630 0.00 0.00 0.00 2.52
644 645 9.980780 TCATGAAATGTACGTTTGTAATGTATG 57.019 29.630 17.63 9.79 46.80 2.39
645 646 9.767684 CATGAAATGTACGTTTGTAATGTATGT 57.232 29.630 17.63 0.00 40.20 2.29
652 653 9.217278 TGTACGTTTGTAATGTATGTATTTGGT 57.783 29.630 0.00 0.00 35.50 3.67
653 654 9.480538 GTACGTTTGTAATGTATGTATTTGGTG 57.519 33.333 0.00 0.00 35.50 4.17
654 655 8.101654 ACGTTTGTAATGTATGTATTTGGTGT 57.898 30.769 0.00 0.00 0.00 4.16
655 656 8.569641 ACGTTTGTAATGTATGTATTTGGTGTT 58.430 29.630 0.00 0.00 0.00 3.32
656 657 8.845648 CGTTTGTAATGTATGTATTTGGTGTTG 58.154 33.333 0.00 0.00 0.00 3.33
657 658 9.685828 GTTTGTAATGTATGTATTTGGTGTTGT 57.314 29.630 0.00 0.00 0.00 3.32
723 724 8.643324 ACTGTCTGACTTAGAGAAAACTGTATT 58.357 33.333 9.51 0.00 35.70 1.89
724 725 9.134734 CTGTCTGACTTAGAGAAAACTGTATTC 57.865 37.037 9.51 0.00 35.70 1.75
725 726 8.638873 TGTCTGACTTAGAGAAAACTGTATTCA 58.361 33.333 9.51 0.00 35.70 2.57
843 857 3.628832 ATCCAAAGGAACCCCTCAAAA 57.371 42.857 0.00 0.00 43.48 2.44
895 914 0.887836 GTCCACGGAAGAAACCACCC 60.888 60.000 0.00 0.00 0.00 4.61
896 915 1.149627 CCACGGAAGAAACCACCCA 59.850 57.895 0.00 0.00 0.00 4.51
897 916 0.251165 CCACGGAAGAAACCACCCAT 60.251 55.000 0.00 0.00 0.00 4.00
1020 1043 1.707200 GGAGACCTCCTTCCTCCCT 59.293 63.158 8.76 0.00 46.16 4.20
1787 1924 2.568090 CCTTCACAATGTGCGGCC 59.432 61.111 8.78 0.00 32.98 6.13
1798 1935 2.753849 TGCGGCCTGTAATTGGGC 60.754 61.111 0.00 9.49 46.89 5.36
1826 1963 1.391157 TTGCCTGCTGGTGTCCAAAC 61.391 55.000 11.69 0.00 30.80 2.93
1853 1990 6.108687 GGATGAAATTGGAAAAGGATGGTTC 58.891 40.000 0.00 0.00 0.00 3.62
1961 2098 5.653255 ATGGGAACTACTGATGGCTATTT 57.347 39.130 0.00 0.00 0.00 1.40
2004 2152 2.697431 TTTCATTTTTCAGGCGACGG 57.303 45.000 0.00 0.00 0.00 4.79
2020 2168 2.357034 GGTGAGGCTTCGTCGCAA 60.357 61.111 0.00 0.00 31.50 4.85
2021 2169 2.383527 GGTGAGGCTTCGTCGCAAG 61.384 63.158 0.00 0.00 31.50 4.01
2022 2170 2.048222 TGAGGCTTCGTCGCAAGG 60.048 61.111 0.00 0.00 38.47 3.61
2023 2171 3.491652 GAGGCTTCGTCGCAAGGC 61.492 66.667 17.27 17.27 46.82 4.35
2025 2173 3.050275 GGCTTCGTCGCAAGGCTT 61.050 61.111 17.53 0.00 43.87 4.35
2026 2174 2.617274 GGCTTCGTCGCAAGGCTTT 61.617 57.895 17.53 0.00 43.87 3.51
2027 2175 1.441016 GCTTCGTCGCAAGGCTTTG 60.441 57.895 3.80 3.80 42.28 2.77
2028 2176 1.941812 CTTCGTCGCAAGGCTTTGT 59.058 52.632 10.54 0.00 42.28 2.83
2029 2177 0.110644 CTTCGTCGCAAGGCTTTGTC 60.111 55.000 10.54 1.98 42.28 3.18
2030 2178 1.827315 TTCGTCGCAAGGCTTTGTCG 61.827 55.000 10.54 13.49 42.28 4.35
2031 2179 2.127232 GTCGCAAGGCTTTGTCGC 60.127 61.111 16.45 0.00 40.30 5.19
2032 2180 2.590291 TCGCAAGGCTTTGTCGCA 60.590 55.556 16.45 6.86 36.65 5.10
2033 2181 1.965930 TCGCAAGGCTTTGTCGCAT 60.966 52.632 16.45 0.00 36.65 4.73
2034 2182 1.081242 CGCAAGGCTTTGTCGCATT 60.081 52.632 10.54 0.00 36.65 3.56
2035 2183 1.067199 CGCAAGGCTTTGTCGCATTC 61.067 55.000 10.54 0.00 36.65 2.67
2036 2184 0.242017 GCAAGGCTTTGTCGCATTCT 59.758 50.000 10.54 0.00 36.65 2.40
2037 2185 1.336240 GCAAGGCTTTGTCGCATTCTT 60.336 47.619 10.54 0.00 36.65 2.52
2038 2186 2.589014 CAAGGCTTTGTCGCATTCTTC 58.411 47.619 0.00 0.00 30.67 2.87
2099 2247 5.046529 TGTTTGTGTTTGTGCATCATAACC 58.953 37.500 0.00 0.00 0.00 2.85
2115 2263 4.379243 CCTGACCGTGGCTTCGCT 62.379 66.667 0.00 0.00 0.00 4.93
2158 2306 7.687941 GAAACCACTCAGGATTCAGATTTTA 57.312 36.000 0.00 0.00 45.71 1.52
2187 2335 7.162082 ACACTAACTAGGAGTTGGAAATTCTG 58.838 38.462 9.39 0.00 38.76 3.02
2262 2410 9.494271 ACATTGTATAAGATCACCACATATGAC 57.506 33.333 10.38 0.00 0.00 3.06
2302 2450 3.251729 CCACCACATTTCAGACAACTCAG 59.748 47.826 0.00 0.00 0.00 3.35
2303 2451 3.879295 CACCACATTTCAGACAACTCAGT 59.121 43.478 0.00 0.00 0.00 3.41
2333 2483 3.369756 CACTTTCGCGCCTAATGAGTAAA 59.630 43.478 0.00 0.00 0.00 2.01
2454 2604 3.766691 GGCTCCGTCCGTTAGGCA 61.767 66.667 7.62 0.00 37.47 4.75
2526 2676 1.690219 CCCATCCCCAAGACTCCTCG 61.690 65.000 0.00 0.00 0.00 4.63
2547 2697 1.671901 CCCCACTTTGTTGCCGTTGT 61.672 55.000 0.00 0.00 0.00 3.32
2553 2709 0.176680 TTTGTTGCCGTTGTTGCCAT 59.823 45.000 0.00 0.00 0.00 4.40
2564 2720 0.036164 TGTTGCCATTGCCTAGTCGT 59.964 50.000 0.00 0.00 36.33 4.34
2572 2728 0.527565 TTGCCTAGTCGTCGGGTAAC 59.472 55.000 0.00 0.00 0.00 2.50
2603 2759 2.966516 GGTAACCATGGTCTCCTAGGAG 59.033 54.545 30.15 30.15 43.21 3.69
2647 2803 2.675844 CCAACGACGATTCCATAAGCAA 59.324 45.455 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.268387 CCCTCCGTTCCTTTATATAAGGTGTA 59.732 42.308 4.13 0.00 38.55 2.90
1 2 5.071384 CCCTCCGTTCCTTTATATAAGGTGT 59.929 44.000 4.13 0.00 38.55 4.16
2 3 5.306160 TCCCTCCGTTCCTTTATATAAGGTG 59.694 44.000 4.13 0.00 38.55 4.00
3 4 5.470501 TCCCTCCGTTCCTTTATATAAGGT 58.529 41.667 4.13 0.00 38.55 3.50
4 5 5.543020 ACTCCCTCCGTTCCTTTATATAAGG 59.457 44.000 0.00 0.00 38.78 2.69
5 6 6.667558 ACTCCCTCCGTTCCTTTATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
6 7 8.731591 ATTACTCCCTCCGTTCCTTTATATAA 57.268 34.615 0.00 0.00 0.00 0.98
8 9 8.912614 ATATTACTCCCTCCGTTCCTTTATAT 57.087 34.615 0.00 0.00 0.00 0.86
9 10 8.731591 AATATTACTCCCTCCGTTCCTTTATA 57.268 34.615 0.00 0.00 0.00 0.98
10 11 7.628501 AATATTACTCCCTCCGTTCCTTTAT 57.371 36.000 0.00 0.00 0.00 1.40
11 12 8.731591 ATAATATTACTCCCTCCGTTCCTTTA 57.268 34.615 0.00 0.00 0.00 1.85
12 13 5.970501 AATATTACTCCCTCCGTTCCTTT 57.029 39.130 0.00 0.00 0.00 3.11
13 14 8.912614 ATATAATATTACTCCCTCCGTTCCTT 57.087 34.615 0.00 0.00 0.00 3.36
14 15 8.912614 AATATAATATTACTCCCTCCGTTCCT 57.087 34.615 0.00 0.00 0.00 3.36
18 19 9.209048 TGCATAATATAATATTACTCCCTCCGT 57.791 33.333 0.00 0.00 0.00 4.69
19 20 9.477484 GTGCATAATATAATATTACTCCCTCCG 57.523 37.037 0.00 0.00 0.00 4.63
41 42 4.779696 TCATGCATGTCCTTTATAGTGCA 58.220 39.130 25.43 0.03 45.28 4.57
42 43 5.471116 TGATCATGCATGTCCTTTATAGTGC 59.529 40.000 25.43 0.78 0.00 4.40
43 44 7.527457 CATGATCATGCATGTCCTTTATAGTG 58.473 38.462 25.43 9.29 40.52 2.74
44 45 7.683437 CATGATCATGCATGTCCTTTATAGT 57.317 36.000 25.43 1.38 40.52 2.12
56 57 7.776618 ATATGAAAGGAACATGATCATGCAT 57.223 32.000 31.17 24.52 42.39 3.96
57 58 7.591421 AATATGAAAGGAACATGATCATGCA 57.409 32.000 31.17 20.37 42.39 3.96
58 59 8.882415 AAAATATGAAAGGAACATGATCATGC 57.118 30.769 31.17 17.96 42.39 4.06
61 62 9.258629 AGGAAAAATATGAAAGGAACATGATCA 57.741 29.630 0.00 0.00 0.00 2.92
64 65 9.927668 GAAAGGAAAAATATGAAAGGAACATGA 57.072 29.630 0.00 0.00 0.00 3.07
65 66 8.863049 CGAAAGGAAAAATATGAAAGGAACATG 58.137 33.333 0.00 0.00 0.00 3.21
66 67 7.545615 GCGAAAGGAAAAATATGAAAGGAACAT 59.454 33.333 0.00 0.00 0.00 2.71
67 68 6.866248 GCGAAAGGAAAAATATGAAAGGAACA 59.134 34.615 0.00 0.00 0.00 3.18
68 69 6.866248 TGCGAAAGGAAAAATATGAAAGGAAC 59.134 34.615 0.00 0.00 0.00 3.62
69 70 6.987386 TGCGAAAGGAAAAATATGAAAGGAA 58.013 32.000 0.00 0.00 0.00 3.36
70 71 6.582677 TGCGAAAGGAAAAATATGAAAGGA 57.417 33.333 0.00 0.00 0.00 3.36
83 84 5.441500 TCCCATATACATTTGCGAAAGGAA 58.558 37.500 0.00 0.00 40.67 3.36
84 85 5.042463 TCCCATATACATTTGCGAAAGGA 57.958 39.130 0.00 0.00 0.00 3.36
85 86 4.821805 ACTCCCATATACATTTGCGAAAGG 59.178 41.667 0.00 0.00 0.00 3.11
86 87 7.672983 ATACTCCCATATACATTTGCGAAAG 57.327 36.000 0.00 0.00 0.00 2.62
87 88 8.458573 AAATACTCCCATATACATTTGCGAAA 57.541 30.769 0.00 0.00 0.00 3.46
88 89 9.562408 TTAAATACTCCCATATACATTTGCGAA 57.438 29.630 0.00 0.00 0.00 4.70
89 90 8.995220 GTTAAATACTCCCATATACATTTGCGA 58.005 33.333 0.00 0.00 0.00 5.10
90 91 8.779303 TGTTAAATACTCCCATATACATTTGCG 58.221 33.333 0.00 0.00 0.00 4.85
134 135 8.070171 CGTCTAATTGACAAGTCATGAAAACTT 58.930 33.333 3.43 0.00 45.60 2.66
135 136 7.307989 CCGTCTAATTGACAAGTCATGAAAACT 60.308 37.037 3.43 0.00 45.60 2.66
136 137 6.797033 CCGTCTAATTGACAAGTCATGAAAAC 59.203 38.462 3.43 0.68 45.60 2.43
137 138 6.072728 CCCGTCTAATTGACAAGTCATGAAAA 60.073 38.462 3.43 0.00 45.60 2.29
138 139 5.411361 CCCGTCTAATTGACAAGTCATGAAA 59.589 40.000 3.43 0.00 45.60 2.69
139 140 4.935205 CCCGTCTAATTGACAAGTCATGAA 59.065 41.667 3.43 0.00 45.60 2.57
140 141 4.503910 CCCGTCTAATTGACAAGTCATGA 58.496 43.478 3.43 0.00 45.60 3.07
141 142 3.063997 GCCCGTCTAATTGACAAGTCATG 59.936 47.826 3.43 0.00 45.60 3.07
142 143 3.055094 AGCCCGTCTAATTGACAAGTCAT 60.055 43.478 3.43 0.00 45.60 3.06
143 144 2.301870 AGCCCGTCTAATTGACAAGTCA 59.698 45.455 0.00 0.00 45.60 3.41
144 145 2.673368 CAGCCCGTCTAATTGACAAGTC 59.327 50.000 0.00 0.00 45.60 3.01
145 146 2.301870 TCAGCCCGTCTAATTGACAAGT 59.698 45.455 0.00 0.00 45.60 3.16
146 147 2.972625 TCAGCCCGTCTAATTGACAAG 58.027 47.619 0.00 1.59 45.60 3.16
147 148 3.410631 TTCAGCCCGTCTAATTGACAA 57.589 42.857 0.00 0.00 45.60 3.18
148 149 3.055458 TCATTCAGCCCGTCTAATTGACA 60.055 43.478 8.20 0.00 45.60 3.58
149 150 3.531538 TCATTCAGCCCGTCTAATTGAC 58.468 45.455 0.00 0.00 42.06 3.18
150 151 3.432186 CCTCATTCAGCCCGTCTAATTGA 60.432 47.826 0.00 0.00 0.00 2.57
151 152 2.874701 CCTCATTCAGCCCGTCTAATTG 59.125 50.000 0.00 0.00 0.00 2.32
152 153 2.746472 GCCTCATTCAGCCCGTCTAATT 60.746 50.000 0.00 0.00 0.00 1.40
153 154 1.202698 GCCTCATTCAGCCCGTCTAAT 60.203 52.381 0.00 0.00 0.00 1.73
154 155 0.178068 GCCTCATTCAGCCCGTCTAA 59.822 55.000 0.00 0.00 0.00 2.10
155 156 0.687757 AGCCTCATTCAGCCCGTCTA 60.688 55.000 0.00 0.00 0.00 2.59
156 157 0.687757 TAGCCTCATTCAGCCCGTCT 60.688 55.000 0.00 0.00 0.00 4.18
157 158 0.249657 CTAGCCTCATTCAGCCCGTC 60.250 60.000 0.00 0.00 0.00 4.79
158 159 1.826024 CTAGCCTCATTCAGCCCGT 59.174 57.895 0.00 0.00 0.00 5.28
159 160 1.596477 GCTAGCCTCATTCAGCCCG 60.596 63.158 2.29 0.00 0.00 6.13
160 161 1.001860 CTAGCTAGCCTCATTCAGCCC 59.998 57.143 12.13 0.00 34.49 5.19
161 162 1.691434 ACTAGCTAGCCTCATTCAGCC 59.309 52.381 20.91 0.00 34.49 4.85
162 163 2.363680 TGACTAGCTAGCCTCATTCAGC 59.636 50.000 20.91 0.00 0.00 4.26
163 164 3.888323 TCTGACTAGCTAGCCTCATTCAG 59.112 47.826 20.91 21.59 0.00 3.02
164 165 3.903467 TCTGACTAGCTAGCCTCATTCA 58.097 45.455 20.91 13.88 0.00 2.57
165 166 4.340950 ACTTCTGACTAGCTAGCCTCATTC 59.659 45.833 20.91 9.96 0.00 2.67
166 167 4.099266 CACTTCTGACTAGCTAGCCTCATT 59.901 45.833 20.91 0.00 0.00 2.57
167 168 3.636300 CACTTCTGACTAGCTAGCCTCAT 59.364 47.826 20.91 0.00 0.00 2.90
168 169 3.020274 CACTTCTGACTAGCTAGCCTCA 58.980 50.000 20.91 15.93 0.00 3.86
169 170 3.283751 TCACTTCTGACTAGCTAGCCTC 58.716 50.000 20.91 12.11 0.00 4.70
170 171 3.374042 TCACTTCTGACTAGCTAGCCT 57.626 47.619 20.91 1.63 0.00 4.58
171 172 4.177783 GTTTCACTTCTGACTAGCTAGCC 58.822 47.826 20.91 10.69 0.00 3.93
172 173 4.810790 TGTTTCACTTCTGACTAGCTAGC 58.189 43.478 20.91 6.62 0.00 3.42
173 174 6.870965 ACAATGTTTCACTTCTGACTAGCTAG 59.129 38.462 19.44 19.44 0.00 3.42
174 175 6.759272 ACAATGTTTCACTTCTGACTAGCTA 58.241 36.000 0.00 0.00 0.00 3.32
175 176 5.615289 ACAATGTTTCACTTCTGACTAGCT 58.385 37.500 0.00 0.00 0.00 3.32
176 177 5.931441 ACAATGTTTCACTTCTGACTAGC 57.069 39.130 0.00 0.00 0.00 3.42
177 178 8.283291 GGTTAACAATGTTTCACTTCTGACTAG 58.717 37.037 3.17 0.00 0.00 2.57
178 179 7.990886 AGGTTAACAATGTTTCACTTCTGACTA 59.009 33.333 3.17 0.00 0.00 2.59
179 180 6.828785 AGGTTAACAATGTTTCACTTCTGACT 59.171 34.615 3.17 0.00 0.00 3.41
180 181 7.027778 AGGTTAACAATGTTTCACTTCTGAC 57.972 36.000 3.17 0.00 0.00 3.51
181 182 7.771361 TGTAGGTTAACAATGTTTCACTTCTGA 59.229 33.333 3.17 0.00 0.00 3.27
182 183 7.925993 TGTAGGTTAACAATGTTTCACTTCTG 58.074 34.615 3.17 0.00 0.00 3.02
183 184 8.514330 TTGTAGGTTAACAATGTTTCACTTCT 57.486 30.769 3.17 0.00 34.50 2.85
186 187 9.131791 AAGATTGTAGGTTAACAATGTTTCACT 57.868 29.630 3.17 2.88 45.71 3.41
213 214 9.664332 GAGGAAGGATGTACTCGTACTATATAA 57.336 37.037 8.51 0.00 37.00 0.98
214 215 8.263640 GGAGGAAGGATGTACTCGTACTATATA 58.736 40.741 8.51 0.00 37.00 0.86
215 216 7.111466 GGAGGAAGGATGTACTCGTACTATAT 58.889 42.308 8.51 0.00 37.00 0.86
216 217 6.471146 GGAGGAAGGATGTACTCGTACTATA 58.529 44.000 8.51 0.00 37.00 1.31
217 218 5.315348 GGAGGAAGGATGTACTCGTACTAT 58.685 45.833 8.51 1.53 37.00 2.12
218 219 4.712476 GGAGGAAGGATGTACTCGTACTA 58.288 47.826 8.51 0.00 37.00 1.82
219 220 3.553904 GGAGGAAGGATGTACTCGTACT 58.446 50.000 8.51 0.00 37.00 2.73
220 221 2.290093 CGGAGGAAGGATGTACTCGTAC 59.710 54.545 0.35 0.35 36.63 3.67
221 222 2.569059 CGGAGGAAGGATGTACTCGTA 58.431 52.381 0.00 0.00 0.00 3.43
222 223 1.390565 CGGAGGAAGGATGTACTCGT 58.609 55.000 0.00 0.00 0.00 4.18
237 238 1.209504 TCAGGGCAGTTAATTCCGGAG 59.790 52.381 3.34 0.00 0.00 4.63
238 239 1.281419 TCAGGGCAGTTAATTCCGGA 58.719 50.000 0.00 0.00 0.00 5.14
239 240 2.122783 TTCAGGGCAGTTAATTCCGG 57.877 50.000 0.00 0.00 0.00 5.14
240 241 3.694072 TCATTTCAGGGCAGTTAATTCCG 59.306 43.478 0.00 0.00 0.00 4.30
241 242 4.706962 ACTCATTTCAGGGCAGTTAATTCC 59.293 41.667 0.00 0.00 0.00 3.01
242 243 5.904362 ACTCATTTCAGGGCAGTTAATTC 57.096 39.130 0.00 0.00 0.00 2.17
243 244 6.670695 AAACTCATTTCAGGGCAGTTAATT 57.329 33.333 0.00 0.00 0.00 1.40
244 245 7.615365 TGATAAACTCATTTCAGGGCAGTTAAT 59.385 33.333 0.00 0.00 0.00 1.40
245 246 6.945435 TGATAAACTCATTTCAGGGCAGTTAA 59.055 34.615 0.00 0.00 0.00 2.01
246 247 6.374333 GTGATAAACTCATTTCAGGGCAGTTA 59.626 38.462 0.00 0.00 35.97 2.24
247 248 5.183904 GTGATAAACTCATTTCAGGGCAGTT 59.816 40.000 0.00 0.00 35.97 3.16
248 249 4.702131 GTGATAAACTCATTTCAGGGCAGT 59.298 41.667 0.00 0.00 35.97 4.40
249 250 4.701651 TGTGATAAACTCATTTCAGGGCAG 59.298 41.667 0.00 0.00 35.97 4.85
250 251 4.661222 TGTGATAAACTCATTTCAGGGCA 58.339 39.130 0.00 0.00 35.97 5.36
251 252 5.183904 AGTTGTGATAAACTCATTTCAGGGC 59.816 40.000 0.00 0.00 35.44 5.19
252 253 6.615088 CAGTTGTGATAAACTCATTTCAGGG 58.385 40.000 0.00 0.00 38.34 4.45
253 254 6.088824 GCAGTTGTGATAAACTCATTTCAGG 58.911 40.000 0.00 0.00 38.34 3.86
254 255 6.088824 GGCAGTTGTGATAAACTCATTTCAG 58.911 40.000 0.00 0.00 38.34 3.02
255 256 5.334802 CGGCAGTTGTGATAAACTCATTTCA 60.335 40.000 0.00 0.00 38.34 2.69
256 257 5.088739 CGGCAGTTGTGATAAACTCATTTC 58.911 41.667 0.00 0.00 38.34 2.17
257 258 4.615912 GCGGCAGTTGTGATAAACTCATTT 60.616 41.667 0.00 0.00 38.34 2.32
258 259 3.119849 GCGGCAGTTGTGATAAACTCATT 60.120 43.478 0.00 0.00 38.34 2.57
259 260 2.420022 GCGGCAGTTGTGATAAACTCAT 59.580 45.455 0.00 0.00 38.34 2.90
260 261 1.804151 GCGGCAGTTGTGATAAACTCA 59.196 47.619 0.00 0.00 38.34 3.41
261 262 2.076863 AGCGGCAGTTGTGATAAACTC 58.923 47.619 1.45 0.00 38.34 3.01
262 263 1.806542 CAGCGGCAGTTGTGATAAACT 59.193 47.619 1.45 0.00 41.08 2.66
263 264 1.804151 TCAGCGGCAGTTGTGATAAAC 59.196 47.619 1.45 0.00 0.00 2.01
264 265 2.177394 TCAGCGGCAGTTGTGATAAA 57.823 45.000 1.45 0.00 0.00 1.40
265 266 2.177394 TTCAGCGGCAGTTGTGATAA 57.823 45.000 1.45 0.00 0.00 1.75
266 267 2.177394 TTTCAGCGGCAGTTGTGATA 57.823 45.000 1.45 0.00 0.00 2.15
267 268 1.200716 CATTTCAGCGGCAGTTGTGAT 59.799 47.619 1.45 0.00 0.00 3.06
268 269 0.592637 CATTTCAGCGGCAGTTGTGA 59.407 50.000 1.45 0.00 0.00 3.58
269 270 0.592637 TCATTTCAGCGGCAGTTGTG 59.407 50.000 1.45 0.00 0.00 3.33
270 271 1.317613 TTCATTTCAGCGGCAGTTGT 58.682 45.000 1.45 0.00 0.00 3.32
271 272 2.420628 TTTCATTTCAGCGGCAGTTG 57.579 45.000 1.45 0.00 0.00 3.16
272 273 2.557924 TCATTTCATTTCAGCGGCAGTT 59.442 40.909 1.45 0.00 0.00 3.16
273 274 2.161855 TCATTTCATTTCAGCGGCAGT 58.838 42.857 1.45 0.00 0.00 4.40
274 275 2.163010 ACTCATTTCATTTCAGCGGCAG 59.837 45.455 1.45 0.00 0.00 4.85
275 276 2.095110 CACTCATTTCATTTCAGCGGCA 60.095 45.455 1.45 0.00 0.00 5.69
276 277 2.095059 ACACTCATTTCATTTCAGCGGC 60.095 45.455 0.00 0.00 0.00 6.53
277 278 3.837213 ACACTCATTTCATTTCAGCGG 57.163 42.857 0.00 0.00 0.00 5.52
278 279 9.507280 AAATTATACACTCATTTCATTTCAGCG 57.493 29.630 0.00 0.00 0.00 5.18
287 288 9.893305 CCCGGAATTAAATTATACACTCATTTC 57.107 33.333 0.73 0.00 0.00 2.17
288 289 8.357402 GCCCGGAATTAAATTATACACTCATTT 58.643 33.333 0.73 0.00 0.00 2.32
289 290 7.308348 CGCCCGGAATTAAATTATACACTCATT 60.308 37.037 0.73 0.00 0.00 2.57
290 291 6.148811 CGCCCGGAATTAAATTATACACTCAT 59.851 38.462 0.73 0.00 0.00 2.90
291 292 5.467399 CGCCCGGAATTAAATTATACACTCA 59.533 40.000 0.73 0.00 0.00 3.41
292 293 5.106830 CCGCCCGGAATTAAATTATACACTC 60.107 44.000 0.73 0.00 37.50 3.51
293 294 4.758165 CCGCCCGGAATTAAATTATACACT 59.242 41.667 0.73 0.00 37.50 3.55
294 295 4.756135 TCCGCCCGGAATTAAATTATACAC 59.244 41.667 0.73 0.00 42.05 2.90
295 296 4.970711 TCCGCCCGGAATTAAATTATACA 58.029 39.130 0.73 0.00 42.05 2.29
296 297 4.393990 CCTCCGCCCGGAATTAAATTATAC 59.606 45.833 0.73 0.00 44.66 1.47
297 298 4.566070 CCCTCCGCCCGGAATTAAATTATA 60.566 45.833 0.73 0.00 44.66 0.98
298 299 3.418047 CCTCCGCCCGGAATTAAATTAT 58.582 45.455 0.73 0.00 44.66 1.28
299 300 2.487625 CCCTCCGCCCGGAATTAAATTA 60.488 50.000 0.73 0.00 44.66 1.40
300 301 1.687563 CCTCCGCCCGGAATTAAATT 58.312 50.000 0.73 0.00 44.66 1.82
301 302 0.179001 CCCTCCGCCCGGAATTAAAT 60.179 55.000 0.73 0.00 44.66 1.40
302 303 1.225148 CCCTCCGCCCGGAATTAAA 59.775 57.895 0.73 0.00 44.66 1.52
303 304 1.689932 TCCCTCCGCCCGGAATTAA 60.690 57.895 0.73 0.00 44.66 1.40
304 305 2.041715 TCCCTCCGCCCGGAATTA 60.042 61.111 0.73 0.00 44.66 1.40
305 306 3.480133 CTCCCTCCGCCCGGAATT 61.480 66.667 0.73 0.00 44.66 2.17
306 307 4.798682 ACTCCCTCCGCCCGGAAT 62.799 66.667 0.73 0.00 44.66 3.01
310 311 2.536997 ATTTCAACTCCCTCCGCCCG 62.537 60.000 0.00 0.00 0.00 6.13
311 312 1.032114 CATTTCAACTCCCTCCGCCC 61.032 60.000 0.00 0.00 0.00 6.13
312 313 0.035439 TCATTTCAACTCCCTCCGCC 60.035 55.000 0.00 0.00 0.00 6.13
313 314 1.821216 TTCATTTCAACTCCCTCCGC 58.179 50.000 0.00 0.00 0.00 5.54
314 315 3.347216 ACATTCATTTCAACTCCCTCCG 58.653 45.455 0.00 0.00 0.00 4.63
315 316 8.697507 ATTATACATTCATTTCAACTCCCTCC 57.302 34.615 0.00 0.00 0.00 4.30
328 329 8.726988 CCGTCCGGAATTAAATTATACATTCAT 58.273 33.333 5.23 0.00 37.50 2.57
329 330 7.932491 TCCGTCCGGAATTAAATTATACATTCA 59.068 33.333 5.23 0.00 42.05 2.57
330 331 8.314143 TCCGTCCGGAATTAAATTATACATTC 57.686 34.615 5.23 0.00 42.05 2.67
331 332 7.389607 CCTCCGTCCGGAATTAAATTATACATT 59.610 37.037 5.23 0.00 44.66 2.71
332 333 6.877322 CCTCCGTCCGGAATTAAATTATACAT 59.123 38.462 5.23 0.00 44.66 2.29
333 334 6.225318 CCTCCGTCCGGAATTAAATTATACA 58.775 40.000 5.23 0.00 44.66 2.29
334 335 5.640783 CCCTCCGTCCGGAATTAAATTATAC 59.359 44.000 5.23 0.00 44.66 1.47
335 336 5.543405 TCCCTCCGTCCGGAATTAAATTATA 59.457 40.000 5.23 0.00 44.66 0.98
336 337 4.348754 TCCCTCCGTCCGGAATTAAATTAT 59.651 41.667 5.23 0.00 44.66 1.28
337 338 3.710677 TCCCTCCGTCCGGAATTAAATTA 59.289 43.478 5.23 0.00 44.66 1.40
338 339 2.506644 TCCCTCCGTCCGGAATTAAATT 59.493 45.455 5.23 0.00 44.66 1.82
339 340 2.104281 CTCCCTCCGTCCGGAATTAAAT 59.896 50.000 5.23 0.00 44.66 1.40
340 341 1.483415 CTCCCTCCGTCCGGAATTAAA 59.517 52.381 5.23 0.00 44.66 1.52
341 342 1.117150 CTCCCTCCGTCCGGAATTAA 58.883 55.000 5.23 0.00 44.66 1.40
342 343 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
343 344 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
344 345 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
345 346 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
346 347 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
347 348 0.107017 TTAGTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
348 349 1.020437 GTTAGTACTCCCTCCGTCCG 58.980 60.000 0.00 0.00 0.00 4.79
349 350 2.433662 AGTTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
350 351 4.688413 CGTATAGTTAGTACTCCCTCCGTC 59.312 50.000 0.00 0.00 35.78 4.79
351 352 4.345257 TCGTATAGTTAGTACTCCCTCCGT 59.655 45.833 0.00 0.00 35.78 4.69
352 353 4.887748 TCGTATAGTTAGTACTCCCTCCG 58.112 47.826 0.00 1.06 35.78 4.63
353 354 5.863965 ACTCGTATAGTTAGTACTCCCTCC 58.136 45.833 0.00 0.00 33.35 4.30
354 355 6.758254 AGACTCGTATAGTTAGTACTCCCTC 58.242 44.000 0.00 0.00 39.07 4.30
355 356 6.745794 AGACTCGTATAGTTAGTACTCCCT 57.254 41.667 0.00 0.00 39.07 4.20
356 357 6.765512 ACAAGACTCGTATAGTTAGTACTCCC 59.234 42.308 0.00 0.00 39.07 4.30
357 358 7.254727 CCACAAGACTCGTATAGTTAGTACTCC 60.255 44.444 0.00 0.00 39.07 3.85
358 359 7.279758 ACCACAAGACTCGTATAGTTAGTACTC 59.720 40.741 0.00 0.00 39.07 2.59
359 360 7.108847 ACCACAAGACTCGTATAGTTAGTACT 58.891 38.462 0.00 0.00 39.07 2.73
360 361 7.313951 ACCACAAGACTCGTATAGTTAGTAC 57.686 40.000 0.00 0.00 39.07 2.73
361 362 7.928307 AACCACAAGACTCGTATAGTTAGTA 57.072 36.000 0.00 0.00 39.07 1.82
362 363 6.830873 AACCACAAGACTCGTATAGTTAGT 57.169 37.500 0.00 0.00 39.07 2.24
363 364 7.699812 GGTAAACCACAAGACTCGTATAGTTAG 59.300 40.741 0.00 0.00 35.54 2.34
364 365 7.394359 AGGTAAACCACAAGACTCGTATAGTTA 59.606 37.037 1.26 0.00 37.18 2.24
365 366 6.210185 AGGTAAACCACAAGACTCGTATAGTT 59.790 38.462 1.26 0.00 37.18 2.24
366 367 5.713861 AGGTAAACCACAAGACTCGTATAGT 59.286 40.000 1.26 0.00 38.98 2.12
367 368 6.205101 AGGTAAACCACAAGACTCGTATAG 57.795 41.667 1.26 0.00 38.89 1.31
368 369 6.594788 AAGGTAAACCACAAGACTCGTATA 57.405 37.500 1.26 0.00 38.89 1.47
369 370 5.479124 AAGGTAAACCACAAGACTCGTAT 57.521 39.130 1.26 0.00 38.89 3.06
370 371 4.942761 AAGGTAAACCACAAGACTCGTA 57.057 40.909 1.26 0.00 38.89 3.43
371 372 3.832615 AAGGTAAACCACAAGACTCGT 57.167 42.857 1.26 0.00 38.89 4.18
372 373 5.295152 ACTAAAGGTAAACCACAAGACTCG 58.705 41.667 1.26 0.00 38.89 4.18
373 374 6.522946 AGACTAAAGGTAAACCACAAGACTC 58.477 40.000 1.26 0.00 38.89 3.36
374 375 6.326843 AGAGACTAAAGGTAAACCACAAGACT 59.673 38.462 1.26 1.39 38.89 3.24
375 376 6.424207 CAGAGACTAAAGGTAAACCACAAGAC 59.576 42.308 1.26 0.00 38.89 3.01
376 377 6.099269 ACAGAGACTAAAGGTAAACCACAAGA 59.901 38.462 1.26 0.00 38.89 3.02
377 378 6.289064 ACAGAGACTAAAGGTAAACCACAAG 58.711 40.000 1.26 0.00 38.89 3.16
378 379 6.243216 ACAGAGACTAAAGGTAAACCACAA 57.757 37.500 1.26 0.00 38.89 3.33
379 380 5.881923 ACAGAGACTAAAGGTAAACCACA 57.118 39.130 1.26 0.00 38.89 4.17
380 381 8.092687 TCATTACAGAGACTAAAGGTAAACCAC 58.907 37.037 1.26 0.00 38.89 4.16
381 382 8.197592 TCATTACAGAGACTAAAGGTAAACCA 57.802 34.615 1.26 0.00 38.89 3.67
382 383 9.498176 TTTCATTACAGAGACTAAAGGTAAACC 57.502 33.333 0.00 0.00 0.00 3.27
386 387 9.653287 CATGTTTCATTACAGAGACTAAAGGTA 57.347 33.333 0.00 0.00 0.00 3.08
387 388 8.157476 ACATGTTTCATTACAGAGACTAAAGGT 58.843 33.333 0.00 0.00 0.00 3.50
388 389 8.553459 ACATGTTTCATTACAGAGACTAAAGG 57.447 34.615 0.00 0.00 0.00 3.11
389 390 9.817365 CAACATGTTTCATTACAGAGACTAAAG 57.183 33.333 8.77 0.00 0.00 1.85
390 391 8.289618 GCAACATGTTTCATTACAGAGACTAAA 58.710 33.333 8.77 0.00 0.00 1.85
391 392 7.661437 AGCAACATGTTTCATTACAGAGACTAA 59.339 33.333 8.77 0.00 0.00 2.24
392 393 7.118245 CAGCAACATGTTTCATTACAGAGACTA 59.882 37.037 8.77 0.00 0.00 2.59
393 394 6.000219 AGCAACATGTTTCATTACAGAGACT 59.000 36.000 8.77 0.00 0.00 3.24
394 395 6.082338 CAGCAACATGTTTCATTACAGAGAC 58.918 40.000 8.77 0.00 0.00 3.36
395 396 5.764686 ACAGCAACATGTTTCATTACAGAGA 59.235 36.000 8.77 0.00 0.00 3.10
396 397 5.854866 CACAGCAACATGTTTCATTACAGAG 59.145 40.000 8.77 0.00 0.00 3.35
397 398 5.278414 CCACAGCAACATGTTTCATTACAGA 60.278 40.000 8.77 0.00 0.00 3.41
398 399 4.919168 CCACAGCAACATGTTTCATTACAG 59.081 41.667 8.77 0.00 0.00 2.74
399 400 4.795635 GCCACAGCAACATGTTTCATTACA 60.796 41.667 8.77 0.00 39.53 2.41
400 401 3.674753 GCCACAGCAACATGTTTCATTAC 59.325 43.478 8.77 0.00 39.53 1.89
401 402 3.611293 CGCCACAGCAACATGTTTCATTA 60.611 43.478 8.77 0.00 39.83 1.90
402 403 2.758009 GCCACAGCAACATGTTTCATT 58.242 42.857 8.77 0.00 39.53 2.57
403 404 1.336148 CGCCACAGCAACATGTTTCAT 60.336 47.619 8.77 0.00 39.83 2.57
404 405 0.030504 CGCCACAGCAACATGTTTCA 59.969 50.000 8.77 0.00 39.83 2.69
405 406 1.277495 GCGCCACAGCAACATGTTTC 61.277 55.000 8.77 3.81 39.83 2.78
406 407 1.300080 GCGCCACAGCAACATGTTT 60.300 52.632 8.77 0.00 39.83 2.83
407 408 2.336088 GCGCCACAGCAACATGTT 59.664 55.556 4.92 4.92 39.83 2.71
408 409 3.673484 GGCGCCACAGCAACATGT 61.673 61.111 24.80 0.00 39.83 3.21
409 410 3.332493 GAGGCGCCACAGCAACATG 62.332 63.158 31.54 0.00 39.83 3.21
410 411 3.058160 GAGGCGCCACAGCAACAT 61.058 61.111 31.54 3.33 39.83 2.71
413 414 3.932580 CTACGAGGCGCCACAGCAA 62.933 63.158 31.54 7.66 39.83 3.91
414 415 4.435436 CTACGAGGCGCCACAGCA 62.435 66.667 31.54 8.94 39.83 4.41
416 417 2.412323 TACCTACGAGGCGCCACAG 61.412 63.158 31.54 21.17 39.63 3.66
417 418 2.361483 TACCTACGAGGCGCCACA 60.361 61.111 31.54 6.45 39.63 4.17
418 419 2.012902 ATGTACCTACGAGGCGCCAC 62.013 60.000 31.54 23.03 39.63 5.01
419 420 1.755395 ATGTACCTACGAGGCGCCA 60.755 57.895 31.54 6.61 39.63 5.69
420 421 1.299926 CATGTACCTACGAGGCGCC 60.300 63.158 21.89 21.89 39.63 6.53
421 422 0.870307 CACATGTACCTACGAGGCGC 60.870 60.000 0.00 0.00 39.63 6.53
422 423 0.870307 GCACATGTACCTACGAGGCG 60.870 60.000 0.00 0.00 39.63 5.52
423 424 0.174845 TGCACATGTACCTACGAGGC 59.825 55.000 0.00 0.00 39.63 4.70
424 425 2.100749 TGATGCACATGTACCTACGAGG 59.899 50.000 0.00 0.00 42.49 4.63
425 426 3.116300 GTGATGCACATGTACCTACGAG 58.884 50.000 0.00 0.00 34.08 4.18
426 427 2.758423 AGTGATGCACATGTACCTACGA 59.242 45.455 0.00 0.00 36.74 3.43
427 428 2.860136 CAGTGATGCACATGTACCTACG 59.140 50.000 0.00 0.00 36.74 3.51
428 429 3.861840 ACAGTGATGCACATGTACCTAC 58.138 45.455 0.00 0.00 36.74 3.18
429 430 4.551702 AACAGTGATGCACATGTACCTA 57.448 40.909 0.00 0.00 36.74 3.08
430 431 3.423539 AACAGTGATGCACATGTACCT 57.576 42.857 0.00 0.00 36.74 3.08
431 432 4.475944 GAAAACAGTGATGCACATGTACC 58.524 43.478 0.00 0.00 36.74 3.34
432 433 4.216257 AGGAAAACAGTGATGCACATGTAC 59.784 41.667 0.00 0.00 36.74 2.90
433 434 4.397420 AGGAAAACAGTGATGCACATGTA 58.603 39.130 0.00 0.00 36.74 2.29
434 435 3.225104 AGGAAAACAGTGATGCACATGT 58.775 40.909 0.00 0.00 36.74 3.21
435 436 3.366679 GGAGGAAAACAGTGATGCACATG 60.367 47.826 0.00 0.00 36.74 3.21
436 437 2.821969 GGAGGAAAACAGTGATGCACAT 59.178 45.455 0.00 0.00 36.74 3.21
437 438 2.229792 GGAGGAAAACAGTGATGCACA 58.770 47.619 0.00 0.00 36.74 4.57
438 439 1.541588 GGGAGGAAAACAGTGATGCAC 59.458 52.381 0.00 0.00 34.10 4.57
439 440 1.425066 AGGGAGGAAAACAGTGATGCA 59.575 47.619 0.00 0.00 0.00 3.96
440 441 2.087646 GAGGGAGGAAAACAGTGATGC 58.912 52.381 0.00 0.00 0.00 3.91
441 442 2.307098 AGGAGGGAGGAAAACAGTGATG 59.693 50.000 0.00 0.00 0.00 3.07
442 443 2.307098 CAGGAGGGAGGAAAACAGTGAT 59.693 50.000 0.00 0.00 0.00 3.06
443 444 1.699634 CAGGAGGGAGGAAAACAGTGA 59.300 52.381 0.00 0.00 0.00 3.41
444 445 1.421646 ACAGGAGGGAGGAAAACAGTG 59.578 52.381 0.00 0.00 0.00 3.66
445 446 1.700186 GACAGGAGGGAGGAAAACAGT 59.300 52.381 0.00 0.00 0.00 3.55
446 447 1.699634 TGACAGGAGGGAGGAAAACAG 59.300 52.381 0.00 0.00 0.00 3.16
447 448 1.814429 TGACAGGAGGGAGGAAAACA 58.186 50.000 0.00 0.00 0.00 2.83
448 449 2.951229 TTGACAGGAGGGAGGAAAAC 57.049 50.000 0.00 0.00 0.00 2.43
449 450 3.963476 TTTTGACAGGAGGGAGGAAAA 57.037 42.857 0.00 0.00 0.00 2.29
450 451 5.252863 TCATATTTTGACAGGAGGGAGGAAA 59.747 40.000 0.00 0.00 0.00 3.13
451 452 4.788075 TCATATTTTGACAGGAGGGAGGAA 59.212 41.667 0.00 0.00 0.00 3.36
452 453 4.370776 TCATATTTTGACAGGAGGGAGGA 58.629 43.478 0.00 0.00 0.00 3.71
453 454 4.778213 TCATATTTTGACAGGAGGGAGG 57.222 45.455 0.00 0.00 0.00 4.30
454 455 6.359804 TCATTCATATTTTGACAGGAGGGAG 58.640 40.000 0.00 0.00 32.84 4.30
455 456 6.325993 TCATTCATATTTTGACAGGAGGGA 57.674 37.500 0.00 0.00 32.84 4.20
456 457 7.504911 AGAATCATTCATATTTTGACAGGAGGG 59.495 37.037 0.00 0.00 32.84 4.30
457 458 8.461249 AGAATCATTCATATTTTGACAGGAGG 57.539 34.615 0.00 0.00 32.84 4.30
471 472 9.525826 AACCAGAAAAGAAGTAGAATCATTCAT 57.474 29.630 0.00 0.00 0.00 2.57
472 473 8.924511 AACCAGAAAAGAAGTAGAATCATTCA 57.075 30.769 0.00 0.00 0.00 2.57
473 474 9.003658 TGAACCAGAAAAGAAGTAGAATCATTC 57.996 33.333 0.00 0.00 0.00 2.67
474 475 8.924511 TGAACCAGAAAAGAAGTAGAATCATT 57.075 30.769 0.00 0.00 0.00 2.57
475 476 8.924511 TTGAACCAGAAAAGAAGTAGAATCAT 57.075 30.769 0.00 0.00 0.00 2.45
476 477 8.621286 GTTTGAACCAGAAAAGAAGTAGAATCA 58.379 33.333 0.00 0.00 0.00 2.57
477 478 8.841300 AGTTTGAACCAGAAAAGAAGTAGAATC 58.159 33.333 0.00 0.00 0.00 2.52
478 479 8.753497 AGTTTGAACCAGAAAAGAAGTAGAAT 57.247 30.769 0.00 0.00 0.00 2.40
479 480 8.575649 AAGTTTGAACCAGAAAAGAAGTAGAA 57.424 30.769 0.00 0.00 0.00 2.10
480 481 8.575649 AAAGTTTGAACCAGAAAAGAAGTAGA 57.424 30.769 0.00 0.00 0.00 2.59
481 482 9.639601 AAAAAGTTTGAACCAGAAAAGAAGTAG 57.360 29.630 0.00 0.00 0.00 2.57
563 564 1.627297 AAAGGCCGGGAGTCATCCTC 61.627 60.000 2.18 0.00 45.85 3.71
564 565 1.616628 AAAGGCCGGGAGTCATCCT 60.617 57.895 2.18 0.00 45.85 3.24
565 566 1.452108 CAAAGGCCGGGAGTCATCC 60.452 63.158 2.18 0.00 45.85 3.51
566 567 2.115291 GCAAAGGCCGGGAGTCATC 61.115 63.158 2.18 0.00 0.00 2.92
567 568 2.044946 GCAAAGGCCGGGAGTCAT 60.045 61.111 2.18 0.00 0.00 3.06
568 569 2.905996 ATGCAAAGGCCGGGAGTCA 61.906 57.895 2.18 0.00 40.13 3.41
569 570 2.044946 ATGCAAAGGCCGGGAGTC 60.045 61.111 2.18 0.00 40.13 3.36
570 571 2.361610 CATGCAAAGGCCGGGAGT 60.362 61.111 2.18 0.00 40.13 3.85
571 572 3.830192 GCATGCAAAGGCCGGGAG 61.830 66.667 14.21 0.00 40.13 4.30
572 573 2.491770 TAAGCATGCAAAGGCCGGGA 62.492 55.000 21.98 0.00 40.13 5.14
573 574 2.008268 CTAAGCATGCAAAGGCCGGG 62.008 60.000 21.98 0.00 40.13 5.73
574 575 1.315257 ACTAAGCATGCAAAGGCCGG 61.315 55.000 21.98 0.00 40.13 6.13
575 576 0.179156 CACTAAGCATGCAAAGGCCG 60.179 55.000 21.98 5.95 40.13 6.13
576 577 0.890683 ACACTAAGCATGCAAAGGCC 59.109 50.000 21.98 0.00 40.13 5.19
577 578 1.541147 TGACACTAAGCATGCAAAGGC 59.459 47.619 21.98 7.49 41.68 4.35
578 579 3.921119 TTGACACTAAGCATGCAAAGG 57.079 42.857 21.98 12.14 0.00 3.11
579 580 7.086376 ACTAATTTGACACTAAGCATGCAAAG 58.914 34.615 21.98 18.21 31.43 2.77
580 581 6.980593 ACTAATTTGACACTAAGCATGCAAA 58.019 32.000 21.98 9.21 32.01 3.68
581 582 6.573664 ACTAATTTGACACTAAGCATGCAA 57.426 33.333 21.98 6.52 0.00 4.08
582 583 6.573664 AACTAATTTGACACTAAGCATGCA 57.426 33.333 21.98 0.00 0.00 3.96
583 584 7.809806 AGAAAACTAATTTGACACTAAGCATGC 59.190 33.333 10.51 10.51 0.00 4.06
584 585 9.683069 AAGAAAACTAATTTGACACTAAGCATG 57.317 29.630 0.00 0.00 0.00 4.06
618 619 9.980780 CATACATTACAAACGTACATTTCATGA 57.019 29.630 0.00 0.00 0.00 3.07
619 620 9.767684 ACATACATTACAAACGTACATTTCATG 57.232 29.630 0.00 0.00 0.00 3.07
626 627 9.217278 ACCAAATACATACATTACAAACGTACA 57.783 29.630 0.00 0.00 0.00 2.90
627 628 9.480538 CACCAAATACATACATTACAAACGTAC 57.519 33.333 0.00 0.00 0.00 3.67
628 629 9.217278 ACACCAAATACATACATTACAAACGTA 57.783 29.630 0.00 0.00 0.00 3.57
629 630 8.101654 ACACCAAATACATACATTACAAACGT 57.898 30.769 0.00 0.00 0.00 3.99
630 631 8.845648 CAACACCAAATACATACATTACAAACG 58.154 33.333 0.00 0.00 0.00 3.60
631 632 9.685828 ACAACACCAAATACATACATTACAAAC 57.314 29.630 0.00 0.00 0.00 2.93
694 695 8.643324 ACAGTTTTCTCTAAGTCAGACAGTATT 58.357 33.333 2.66 0.00 0.00 1.89
695 696 8.184304 ACAGTTTTCTCTAAGTCAGACAGTAT 57.816 34.615 2.66 0.00 0.00 2.12
696 697 7.584122 ACAGTTTTCTCTAAGTCAGACAGTA 57.416 36.000 2.66 0.00 0.00 2.74
697 698 6.472686 ACAGTTTTCTCTAAGTCAGACAGT 57.527 37.500 2.66 0.00 0.00 3.55
698 699 9.134734 GAATACAGTTTTCTCTAAGTCAGACAG 57.865 37.037 2.66 0.00 0.00 3.51
699 700 8.638873 TGAATACAGTTTTCTCTAAGTCAGACA 58.361 33.333 2.66 0.00 0.00 3.41
700 701 9.477484 TTGAATACAGTTTTCTCTAAGTCAGAC 57.523 33.333 5.47 0.00 0.00 3.51
701 702 9.477484 GTTGAATACAGTTTTCTCTAAGTCAGA 57.523 33.333 5.47 0.00 0.00 3.27
702 703 8.713271 GGTTGAATACAGTTTTCTCTAAGTCAG 58.287 37.037 5.47 0.00 0.00 3.51
703 704 8.208224 TGGTTGAATACAGTTTTCTCTAAGTCA 58.792 33.333 5.47 0.00 0.00 3.41
704 705 8.496751 GTGGTTGAATACAGTTTTCTCTAAGTC 58.503 37.037 5.47 0.00 0.00 3.01
705 706 7.990886 TGTGGTTGAATACAGTTTTCTCTAAGT 59.009 33.333 5.47 0.00 0.00 2.24
706 707 8.378172 TGTGGTTGAATACAGTTTTCTCTAAG 57.622 34.615 5.47 0.00 0.00 2.18
707 708 8.918202 ATGTGGTTGAATACAGTTTTCTCTAA 57.082 30.769 5.47 0.00 0.00 2.10
708 709 8.918202 AATGTGGTTGAATACAGTTTTCTCTA 57.082 30.769 5.47 0.00 0.00 2.43
709 710 7.823745 AATGTGGTTGAATACAGTTTTCTCT 57.176 32.000 5.47 0.00 0.00 3.10
710 711 8.871686 AAAATGTGGTTGAATACAGTTTTCTC 57.128 30.769 5.47 0.03 40.76 2.87
723 724 6.310941 TCCTTCCTATTGAAAATGTGGTTGA 58.689 36.000 0.00 0.00 31.06 3.18
724 725 6.209391 ACTCCTTCCTATTGAAAATGTGGTTG 59.791 38.462 0.00 0.00 31.06 3.77
725 726 6.314917 ACTCCTTCCTATTGAAAATGTGGTT 58.685 36.000 0.00 0.00 31.06 3.67
774 788 2.299013 AGATAGACCGTTGTGTTCTGCA 59.701 45.455 0.00 0.00 0.00 4.41
843 857 5.183140 CGTGGACCTTTGGATTATGTTTTCT 59.817 40.000 0.00 0.00 0.00 2.52
895 914 6.751425 GCTTATCTATGGAGAAGACGATGATG 59.249 42.308 16.67 0.00 41.70 3.07
896 915 6.663093 AGCTTATCTATGGAGAAGACGATGAT 59.337 38.462 16.67 0.00 41.70 2.45
897 916 6.007076 AGCTTATCTATGGAGAAGACGATGA 58.993 40.000 16.67 0.00 41.70 2.92
1188 1211 2.754658 ACCGTCAGGCCCTCGTAG 60.755 66.667 0.00 0.00 42.76 3.51
1787 1924 4.616835 GCAAGAGAAACTGCCCAATTACAG 60.617 45.833 1.80 1.80 39.86 2.74
1798 1935 0.879765 CCAGCAGGCAAGAGAAACTG 59.120 55.000 0.00 0.00 0.00 3.16
1802 1939 0.250467 GACACCAGCAGGCAAGAGAA 60.250 55.000 0.00 0.00 39.06 2.87
1826 1963 5.395990 CCATCCTTTTCCAATTTCATCCCAG 60.396 44.000 0.00 0.00 0.00 4.45
1853 1990 4.494484 TGATATACATTGCCCGATTCTCG 58.506 43.478 0.00 0.00 40.07 4.04
1933 2070 4.380867 GCCATCAGTAGTTCCCATTGTTTG 60.381 45.833 0.00 0.00 0.00 2.93
2004 2152 2.383527 CCTTGCGACGAAGCCTCAC 61.384 63.158 0.00 0.00 36.02 3.51
2020 2168 1.537202 GTGAAGAATGCGACAAAGCCT 59.463 47.619 0.00 0.00 36.02 4.58
2021 2169 1.537202 AGTGAAGAATGCGACAAAGCC 59.463 47.619 0.00 0.00 36.02 4.35
2022 2170 2.977405 AGTGAAGAATGCGACAAAGC 57.023 45.000 0.00 0.00 37.71 3.51
2023 2171 5.147162 GGTTAAGTGAAGAATGCGACAAAG 58.853 41.667 0.00 0.00 0.00 2.77
2025 2173 3.185594 CGGTTAAGTGAAGAATGCGACAA 59.814 43.478 0.00 0.00 0.00 3.18
2026 2174 2.734606 CGGTTAAGTGAAGAATGCGACA 59.265 45.455 0.00 0.00 0.00 4.35
2027 2175 2.735134 ACGGTTAAGTGAAGAATGCGAC 59.265 45.455 0.00 0.00 0.00 5.19
2028 2176 2.734606 CACGGTTAAGTGAAGAATGCGA 59.265 45.455 0.00 0.00 44.43 5.10
2029 2177 2.478894 ACACGGTTAAGTGAAGAATGCG 59.521 45.455 4.00 0.00 44.43 4.73
2030 2178 3.810373 CACACGGTTAAGTGAAGAATGC 58.190 45.455 4.00 0.00 44.43 3.56
2031 2179 3.498397 AGCACACGGTTAAGTGAAGAATG 59.502 43.478 4.00 0.00 44.43 2.67
2032 2180 3.740115 AGCACACGGTTAAGTGAAGAAT 58.260 40.909 4.00 0.00 44.43 2.40
2033 2181 3.188159 AGCACACGGTTAAGTGAAGAA 57.812 42.857 4.00 0.00 44.43 2.52
2034 2182 2.902705 AGCACACGGTTAAGTGAAGA 57.097 45.000 4.00 0.00 44.43 2.87
2035 2183 3.370978 CCATAGCACACGGTTAAGTGAAG 59.629 47.826 4.00 0.00 44.43 3.02
2036 2184 3.244284 ACCATAGCACACGGTTAAGTGAA 60.244 43.478 4.00 0.00 44.43 3.18
2037 2185 2.300723 ACCATAGCACACGGTTAAGTGA 59.699 45.455 4.00 0.00 44.43 3.41
2038 2186 2.695359 ACCATAGCACACGGTTAAGTG 58.305 47.619 0.00 0.00 46.83 3.16
2115 2263 0.035881 CTGAGCAGAAAGTGGAGGCA 59.964 55.000 0.00 0.00 0.00 4.75
2139 2287 8.660373 GTGTTACTAAAATCTGAATCCTGAGTG 58.340 37.037 0.00 0.00 0.00 3.51
2158 2306 7.607615 TTTCCAACTCCTAGTTAGTGTTACT 57.392 36.000 0.00 0.00 36.03 2.24
2187 2335 8.329203 ACAGGAAACTTTGAGATCTATTTCAC 57.671 34.615 0.00 0.00 40.21 3.18
2230 2378 8.973182 TGTGGTGATCTTATACAATGTACTGTA 58.027 33.333 0.00 0.00 36.27 2.74
2231 2379 7.847096 TGTGGTGATCTTATACAATGTACTGT 58.153 34.615 0.00 0.00 0.00 3.55
2232 2380 8.893219 ATGTGGTGATCTTATACAATGTACTG 57.107 34.615 0.00 0.00 0.00 2.74
2249 2397 2.661718 TCCTAGCGTCATATGTGGTGA 58.338 47.619 1.90 0.00 0.00 4.02
2262 2410 1.270094 TGGCAATCGGTTATCCTAGCG 60.270 52.381 0.00 0.00 40.17 4.26
2302 2450 0.163146 GCGCGAAAGTGGTAGTTCAC 59.837 55.000 12.10 0.00 43.14 3.18
2303 2451 0.947180 GGCGCGAAAGTGGTAGTTCA 60.947 55.000 12.10 0.00 43.14 3.18
2333 2483 6.215121 TCAATTCGTCATGAGTGCAATTTTT 58.785 32.000 0.00 0.00 0.00 1.94
2337 2487 3.181503 GCTCAATTCGTCATGAGTGCAAT 60.182 43.478 0.00 0.00 43.91 3.56
2339 2489 1.733912 GCTCAATTCGTCATGAGTGCA 59.266 47.619 0.00 0.00 43.91 4.57
2340 2490 2.005451 AGCTCAATTCGTCATGAGTGC 58.995 47.619 0.00 0.00 43.91 4.40
2341 2491 2.280971 CGAGCTCAATTCGTCATGAGTG 59.719 50.000 15.40 0.00 43.91 3.51
2342 2492 2.534298 CGAGCTCAATTCGTCATGAGT 58.466 47.619 15.40 3.80 43.91 3.41
2343 2493 1.257415 GCGAGCTCAATTCGTCATGAG 59.743 52.381 15.40 8.91 44.66 2.90
2345 2495 1.001624 TGCGAGCTCAATTCGTCATG 58.998 50.000 15.40 0.00 40.08 3.07
2392 2542 1.600638 CTCATCAGGCTGACAGGCA 59.399 57.895 28.64 11.42 44.19 4.75
2431 2581 1.601419 TAACGGACGGAGCCTTCTGG 61.601 60.000 6.77 0.00 33.77 3.86
2484 2634 0.381801 GATTGAAACGGATGGCGCAT 59.618 50.000 10.83 0.00 0.00 4.73
2491 2641 0.701731 TGGGTGGGATTGAAACGGAT 59.298 50.000 0.00 0.00 0.00 4.18
2526 2676 3.989787 CGGCAACAAAGTGGGGCC 61.990 66.667 0.00 0.00 37.34 5.80
2547 2697 0.739462 CGACGACTAGGCAATGGCAA 60.739 55.000 10.05 0.00 43.71 4.52
2553 2709 0.527565 GTTACCCGACGACTAGGCAA 59.472 55.000 0.00 0.00 0.00 4.52
2578 2734 1.514087 GAGACCATGGTTACCGCGA 59.486 57.895 20.85 0.00 0.00 5.87
2603 2759 2.642700 GAGCCGCTCGAGAGATCC 59.357 66.667 18.75 5.00 40.84 3.36
2636 2792 2.224670 ACGAACCTGGTTGCTTATGGAA 60.225 45.455 18.42 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.