Multiple sequence alignment - TraesCS4B01G194800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G194800 chr4B 100.000 2590 0 0 1 2590 418519984 418522573 0.000000e+00 4783.0
1 TraesCS4B01G194800 chr4B 91.803 366 26 4 2135 2496 598264766 598265131 8.270000e-140 507.0
2 TraesCS4B01G194800 chr4B 90.286 175 13 4 2415 2588 613328398 613328569 2.590000e-55 226.0
3 TraesCS4B01G194800 chr4A 87.873 1575 119 41 513 2057 132992056 132990524 0.000000e+00 1784.0
4 TraesCS4B01G194800 chr4A 92.379 538 33 4 1 530 132992890 132992353 0.000000e+00 760.0
5 TraesCS4B01G194800 chr4D 93.023 731 28 12 1147 1872 339079149 339079861 0.000000e+00 1046.0
6 TraesCS4B01G194800 chr4D 93.750 528 29 2 1 524 339077373 339077900 0.000000e+00 789.0
7 TraesCS4B01G194800 chr4D 79.335 571 65 26 513 1067 339078180 339078713 4.100000e-93 351.0
8 TraesCS4B01G194800 chr4D 91.573 178 14 1 1882 2058 339079949 339080126 7.160000e-61 244.0
9 TraesCS4B01G194800 chr3B 91.572 439 34 3 2153 2588 562782115 562781677 1.030000e-168 603.0
10 TraesCS4B01G194800 chr3B 91.808 354 21 3 2151 2504 158206287 158206632 1.080000e-133 486.0
11 TraesCS4B01G194800 chr3B 100.000 31 0 0 1639 1669 796012737 796012767 1.000000e-04 58.4
12 TraesCS4B01G194800 chr5B 90.132 456 29 8 2147 2588 641044541 641044994 1.730000e-161 579.0
13 TraesCS4B01G194800 chr5B 87.699 439 22 4 2150 2588 270326321 270325915 1.390000e-132 483.0
14 TraesCS4B01G194800 chr5B 86.275 51 6 1 1639 1688 477880515 477880465 1.000000e-03 54.7
15 TraesCS4B01G194800 chr5A 89.912 456 31 7 2147 2588 705142078 705142532 8.040000e-160 573.0
16 TraesCS4B01G194800 chr6A 88.372 473 28 6 2142 2588 605219285 605219756 6.300000e-151 544.0
17 TraesCS4B01G194800 chr1B 91.477 352 19 4 2150 2500 61433408 61433067 8.390000e-130 473.0
18 TraesCS4B01G194800 chr1B 88.618 369 28 11 2150 2507 61442854 61442489 1.100000e-118 436.0
19 TraesCS4B01G194800 chr7B 86.261 444 28 9 2150 2588 66199861 66199446 3.930000e-123 451.0
20 TraesCS4B01G194800 chr7B 86.347 271 11 6 2333 2588 219593440 219593181 3.280000e-69 272.0
21 TraesCS4B01G194800 chr6B 91.667 48 1 2 1627 1674 566533947 566533903 2.150000e-06 63.9
22 TraesCS4B01G194800 chr7A 97.143 35 1 0 1640 1674 64687388 64687354 2.780000e-05 60.2
23 TraesCS4B01G194800 chr1A 96.875 32 1 0 1641 1672 27308407 27308376 1.000000e-03 54.7
24 TraesCS4B01G194800 chr3A 100.000 28 0 0 1637 1664 123307278 123307251 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G194800 chr4B 418519984 418522573 2589 False 4783.0 4783 100.00000 1 2590 1 chr4B.!!$F1 2589
1 TraesCS4B01G194800 chr4A 132990524 132992890 2366 True 1272.0 1784 90.12600 1 2057 2 chr4A.!!$R1 2056
2 TraesCS4B01G194800 chr4D 339077373 339080126 2753 False 607.5 1046 89.42025 1 2058 4 chr4D.!!$F1 2057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 1199 0.034476 TCTGTTGTCTGCTCTGCTGG 59.966 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 3061 0.036164 AGCGGTGCAACATGGACTTA 59.964 50.0 0.98 0.0 38.83 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.708631 ACCTCATCTCGTCCATCATCTTT 59.291 43.478 0.00 0.00 0.00 2.52
52 53 2.343758 GCTTGACAGCCGGAGTGA 59.656 61.111 5.05 0.00 40.61 3.41
125 126 0.824759 GGTCTGATCTAGTTGGCGGT 59.175 55.000 0.00 0.00 0.00 5.68
161 162 2.031333 CCAGTTCTCAGAGCTTTGTTGC 60.031 50.000 3.90 0.00 0.00 4.17
176 177 2.449464 TGTTGCTGGAATCTGAATGGG 58.551 47.619 0.00 0.00 0.00 4.00
259 260 3.429372 TTGGCTTGCTGGTCCGGTT 62.429 57.895 0.00 0.00 0.00 4.44
338 342 1.723542 GATTGTGCAGTCAGAGACACG 59.276 52.381 0.00 0.00 35.79 4.49
341 345 2.340078 GCAGTCAGAGACACGCCA 59.660 61.111 0.00 0.00 34.60 5.69
352 360 3.762288 AGAGACACGCCATCTTGTAGTAA 59.238 43.478 0.00 0.00 0.00 2.24
355 363 4.159693 AGACACGCCATCTTGTAGTAATGA 59.840 41.667 0.00 0.00 0.00 2.57
359 367 6.374333 ACACGCCATCTTGTAGTAATGAAAAT 59.626 34.615 0.00 0.00 0.00 1.82
505 518 5.750524 TCTTGTATAATGCCAGCTTAACCA 58.249 37.500 0.00 0.00 0.00 3.67
522 849 0.320374 CCAAGGACAGACAGGCGTAA 59.680 55.000 0.00 0.00 0.00 3.18
546 873 0.100503 CCCAAAAATAAGCGCTCCCG 59.899 55.000 12.06 0.00 37.57 5.14
552 879 3.305398 AAATAAGCGCTCCCGAGATAG 57.695 47.619 12.06 0.00 36.29 2.08
561 888 1.043116 TCCCGAGATAGTGGTGGCAG 61.043 60.000 0.00 0.00 0.00 4.85
579 906 4.637771 GCCACGGTTCAAGGCTAT 57.362 55.556 0.00 0.00 44.92 2.97
584 911 2.422597 CACGGTTCAAGGCTATCAACA 58.577 47.619 0.00 0.00 0.00 3.33
589 916 4.261405 CGGTTCAAGGCTATCAACAAAACA 60.261 41.667 0.00 0.00 0.00 2.83
593 922 5.626142 TCAAGGCTATCAACAAAACAGGTA 58.374 37.500 0.00 0.00 0.00 3.08
599 928 1.953686 TCAACAAAACAGGTAGCCAGC 59.046 47.619 0.00 0.00 0.00 4.85
602 931 2.383855 ACAAAACAGGTAGCCAGCAAA 58.616 42.857 0.00 0.00 0.00 3.68
623 952 3.793797 AAAAAGACCGTCCCTGTTTTG 57.206 42.857 0.00 0.00 0.00 2.44
624 953 1.029681 AAAGACCGTCCCTGTTTTGC 58.970 50.000 0.00 0.00 0.00 3.68
625 954 0.182775 AAGACCGTCCCTGTTTTGCT 59.817 50.000 0.00 0.00 0.00 3.91
626 955 0.250338 AGACCGTCCCTGTTTTGCTC 60.250 55.000 0.00 0.00 0.00 4.26
627 956 0.250338 GACCGTCCCTGTTTTGCTCT 60.250 55.000 0.00 0.00 0.00 4.09
628 957 0.250338 ACCGTCCCTGTTTTGCTCTC 60.250 55.000 0.00 0.00 0.00 3.20
629 958 0.035458 CCGTCCCTGTTTTGCTCTCT 59.965 55.000 0.00 0.00 0.00 3.10
630 959 1.543429 CCGTCCCTGTTTTGCTCTCTT 60.543 52.381 0.00 0.00 0.00 2.85
631 960 2.222027 CGTCCCTGTTTTGCTCTCTTT 58.778 47.619 0.00 0.00 0.00 2.52
632 961 2.224314 CGTCCCTGTTTTGCTCTCTTTC 59.776 50.000 0.00 0.00 0.00 2.62
633 962 3.214328 GTCCCTGTTTTGCTCTCTTTCA 58.786 45.455 0.00 0.00 0.00 2.69
634 963 3.823304 GTCCCTGTTTTGCTCTCTTTCAT 59.177 43.478 0.00 0.00 0.00 2.57
635 964 4.074970 TCCCTGTTTTGCTCTCTTTCATC 58.925 43.478 0.00 0.00 0.00 2.92
636 965 3.192212 CCCTGTTTTGCTCTCTTTCATCC 59.808 47.826 0.00 0.00 0.00 3.51
647 976 3.054802 TCTCTTTCATCCCTCTCTTTGCC 60.055 47.826 0.00 0.00 0.00 4.52
654 983 3.130160 CTCTCTTTGCCGGCTGCC 61.130 66.667 29.70 9.11 40.16 4.85
689 1018 5.358160 GGATCTCGAATTCACCTTGGATTTT 59.642 40.000 6.22 0.00 0.00 1.82
699 1028 3.374058 CACCTTGGATTTTGTAGCGTAGG 59.626 47.826 0.00 0.00 0.00 3.18
700 1029 2.943033 CCTTGGATTTTGTAGCGTAGGG 59.057 50.000 0.00 0.00 0.00 3.53
721 1051 3.804193 GGCCGCGCCTTTTCTCAG 61.804 66.667 0.00 0.00 46.69 3.35
722 1052 3.804193 GCCGCGCCTTTTCTCAGG 61.804 66.667 0.00 0.00 36.95 3.86
728 1058 4.009015 CCTTTTCTCAGGCTGCCC 57.991 61.111 16.57 0.00 0.00 5.36
729 1059 1.381851 CCTTTTCTCAGGCTGCCCT 59.618 57.895 16.57 0.00 44.25 5.19
741 1071 4.254709 TGCCCTGCTGCGTCAAGT 62.255 61.111 0.00 0.00 0.00 3.16
742 1072 3.730761 GCCCTGCTGCGTCAAGTG 61.731 66.667 0.00 0.00 0.00 3.16
745 1075 1.301244 CCTGCTGCGTCAAGTGTCT 60.301 57.895 0.00 0.00 0.00 3.41
762 1092 1.996191 GTCTTCTGTCGCAGGTGAATC 59.004 52.381 6.95 0.00 31.51 2.52
780 1111 4.641541 TGAATCGGTCTAAATGTCTCCGTA 59.358 41.667 0.00 0.00 41.58 4.02
782 1113 5.786264 ATCGGTCTAAATGTCTCCGTATT 57.214 39.130 0.00 0.00 41.58 1.89
785 1116 6.400568 TCGGTCTAAATGTCTCCGTATTTTT 58.599 36.000 0.00 0.00 41.58 1.94
805 1136 2.695314 GCTGGATTTCGGCTACCTG 58.305 57.895 0.00 0.00 44.20 4.00
830 1161 3.908081 GGCGGCATGGCATCTTGG 61.908 66.667 20.37 2.52 44.08 3.61
837 1168 2.298163 GGCATGGCATCTTGGGATTTAG 59.702 50.000 15.47 0.00 0.00 1.85
838 1169 2.288640 GCATGGCATCTTGGGATTTAGC 60.289 50.000 0.00 0.00 0.00 3.09
860 1191 2.495270 TGATCTCCTCTCTGTTGTCTGC 59.505 50.000 0.00 0.00 0.00 4.26
865 1196 1.672441 CCTCTCTGTTGTCTGCTCTGC 60.672 57.143 0.00 0.00 0.00 4.26
866 1197 1.273048 CTCTCTGTTGTCTGCTCTGCT 59.727 52.381 0.00 0.00 0.00 4.24
867 1198 1.000618 TCTCTGTTGTCTGCTCTGCTG 59.999 52.381 0.00 0.00 0.00 4.41
868 1199 0.034476 TCTGTTGTCTGCTCTGCTGG 59.966 55.000 0.00 0.00 0.00 4.85
888 1219 3.640967 TGGCTGGCTTAACATGAAGTTTT 59.359 39.130 0.00 0.00 41.64 2.43
893 1224 6.214191 TGGCTTAACATGAAGTTTTCAACA 57.786 33.333 0.00 0.00 43.95 3.33
899 1230 5.505173 ACATGAAGTTTTCAACACAGGAG 57.495 39.130 0.00 0.00 43.95 3.69
900 1231 4.339247 ACATGAAGTTTTCAACACAGGAGG 59.661 41.667 0.00 0.00 43.95 4.30
914 1245 3.260380 CACAGGAGGGATCTAATAGCTGG 59.740 52.174 0.00 0.00 0.00 4.85
929 1261 1.598701 GCTGGGATTCTTGGTGGCAC 61.599 60.000 9.70 9.70 0.00 5.01
937 1269 2.358125 TTGGTGGCACCGATCACG 60.358 61.111 30.14 0.00 42.58 4.35
938 1270 2.779951 CTTGGTGGCACCGATCACGA 62.780 60.000 30.14 9.40 42.58 4.35
951 1287 3.485877 CCGATCACGAAAGGATTCAAAGC 60.486 47.826 0.00 0.00 42.66 3.51
954 1290 5.644644 GATCACGAAAGGATTCAAAGCAAT 58.355 37.500 0.00 0.00 35.15 3.56
956 1292 6.757897 TCACGAAAGGATTCAAAGCAATAT 57.242 33.333 0.00 0.00 35.15 1.28
981 1323 4.854399 TGAAATAAAGTTTCAGCACACGG 58.146 39.130 0.00 0.00 33.90 4.94
992 1334 1.666872 GCACACGGAACCTAAGCGT 60.667 57.895 0.00 0.00 0.00 5.07
994 1336 1.666872 ACACGGAACCTAAGCGTGC 60.667 57.895 0.00 0.00 32.34 5.34
1007 1349 3.060020 GCGTGCAGCTGATGGCAAT 62.060 57.895 20.43 0.00 42.45 3.56
1026 1368 4.333649 GCAATCACTGATGATCCGAAGAAA 59.666 41.667 0.00 0.00 45.26 2.52
1030 1372 4.118410 CACTGATGATCCGAAGAAAGAGG 58.882 47.826 0.00 0.00 0.00 3.69
1032 1374 2.501316 TGATGATCCGAAGAAAGAGGCA 59.499 45.455 0.00 0.00 0.00 4.75
1035 1377 2.501316 TGATCCGAAGAAAGAGGCATCA 59.499 45.455 0.00 0.00 0.00 3.07
1036 1378 3.055167 TGATCCGAAGAAAGAGGCATCAA 60.055 43.478 0.00 0.00 0.00 2.57
1078 1423 5.242838 TGGAATAACAAAGCAGGTAAGGTTG 59.757 40.000 0.00 0.00 0.00 3.77
1086 1431 1.073098 CAGGTAAGGTTGAGGGGGTT 58.927 55.000 0.00 0.00 0.00 4.11
1098 1443 1.380380 GGGGGTTTCCTGCATCCAG 60.380 63.158 0.00 0.00 38.85 3.86
1107 1452 0.682209 CCTGCATCCAGTTCCAAGGG 60.682 60.000 0.00 0.00 37.38 3.95
1110 1455 1.281867 TGCATCCAGTTCCAAGGGTAG 59.718 52.381 0.00 0.00 0.00 3.18
1111 1456 1.559682 GCATCCAGTTCCAAGGGTAGA 59.440 52.381 0.00 0.00 0.00 2.59
1119 1471 3.203487 AGTTCCAAGGGTAGAAACAACCA 59.797 43.478 0.00 0.00 38.87 3.67
1124 1476 0.251474 GGGTAGAAACAACCACCCCC 60.251 60.000 0.00 0.00 44.20 5.40
1423 2124 4.066646 TCCTTCTGTTGTTCAATCGACA 57.933 40.909 0.00 0.00 0.00 4.35
1429 2130 3.275143 TGTTGTTCAATCGACACCAAGT 58.725 40.909 0.00 0.00 0.00 3.16
1590 2291 2.746277 GGTGGTGGCCATCGTGAC 60.746 66.667 9.72 1.68 35.28 3.67
1594 2295 1.741770 GGTGGCCATCGTGACTCAC 60.742 63.158 9.72 0.00 0.00 3.51
1634 2337 2.031944 TCGAGCGATGTGATGTAGTAGC 60.032 50.000 0.00 0.00 0.00 3.58
1635 2338 2.031595 CGAGCGATGTGATGTAGTAGCT 60.032 50.000 0.00 0.00 36.32 3.32
1669 2373 8.148351 CACTCTTATATTATGAAACGGAGGGAA 58.852 37.037 0.00 0.00 0.00 3.97
1703 2407 4.361971 AGCATGCCTGGCTGCTGT 62.362 61.111 31.12 17.07 46.55 4.40
1708 2412 3.130160 GCCTGGCTGCTGTACTGC 61.130 66.667 17.07 17.07 42.19 4.40
1732 2436 2.095516 TGCGCATGCTAAATGAAACGAA 60.096 40.909 17.13 0.00 43.34 3.85
1734 2438 3.241333 GCGCATGCTAAATGAAACGAAAC 60.241 43.478 17.13 0.00 38.39 2.78
1742 2446 2.681152 ATGAAACGAAACCAAGACGC 57.319 45.000 0.00 0.00 0.00 5.19
1744 2448 2.823984 TGAAACGAAACCAAGACGCTA 58.176 42.857 0.00 0.00 0.00 4.26
1872 2581 3.349006 CCGCCAGCGCCATACATC 61.349 66.667 2.29 0.00 38.24 3.06
1873 2582 2.588596 CGCCAGCGCCATACATCA 60.589 61.111 2.29 0.00 0.00 3.07
1874 2583 2.885676 CGCCAGCGCCATACATCAC 61.886 63.158 2.29 0.00 0.00 3.06
1875 2584 1.819208 GCCAGCGCCATACATCACA 60.819 57.895 2.29 0.00 0.00 3.58
1877 2586 0.589708 CCAGCGCCATACATCACATG 59.410 55.000 2.29 0.00 0.00 3.21
1952 2739 2.739932 CGGACTGAATGGTGCTAAGAGG 60.740 54.545 0.00 0.00 0.00 3.69
2004 2791 0.827368 GAGGCTTCTCCGATTGGACT 59.173 55.000 0.00 0.00 40.17 3.85
2029 2816 2.067365 TCGATGAGGTTAGGCTGCTA 57.933 50.000 0.00 0.00 0.00 3.49
2058 2846 1.440938 TTTTCCACTTGCCACGTCGG 61.441 55.000 0.00 0.00 38.11 4.79
2059 2847 2.313051 TTTCCACTTGCCACGTCGGA 62.313 55.000 8.04 0.00 36.56 4.55
2060 2848 2.981977 TTCCACTTGCCACGTCGGAC 62.982 60.000 8.04 0.00 36.56 4.79
2070 2858 2.124983 CGTCGGACGGAGGGAGTA 60.125 66.667 22.18 0.00 38.08 2.59
2071 2859 1.525535 CGTCGGACGGAGGGAGTAT 60.526 63.158 22.18 0.00 38.08 2.12
2072 2860 1.783031 CGTCGGACGGAGGGAGTATG 61.783 65.000 22.18 0.00 38.08 2.39
2073 2861 0.465097 GTCGGACGGAGGGAGTATGA 60.465 60.000 0.00 0.00 0.00 2.15
2074 2862 0.465097 TCGGACGGAGGGAGTATGAC 60.465 60.000 0.00 0.00 0.00 3.06
2075 2863 1.453762 CGGACGGAGGGAGTATGACC 61.454 65.000 0.00 0.00 0.00 4.02
2087 2875 6.347859 GGGAGTATGACCCTATAAACAGAG 57.652 45.833 0.00 0.00 43.65 3.35
2088 2876 6.075984 GGGAGTATGACCCTATAAACAGAGA 58.924 44.000 0.00 0.00 43.65 3.10
2089 2877 6.015265 GGGAGTATGACCCTATAAACAGAGAC 60.015 46.154 0.00 0.00 43.65 3.36
2090 2878 6.550108 GGAGTATGACCCTATAAACAGAGACA 59.450 42.308 0.00 0.00 0.00 3.41
2091 2879 7.255660 GGAGTATGACCCTATAAACAGAGACAG 60.256 44.444 0.00 0.00 0.00 3.51
2092 2880 5.878406 ATGACCCTATAAACAGAGACAGG 57.122 43.478 0.00 0.00 0.00 4.00
2093 2881 4.942944 TGACCCTATAAACAGAGACAGGA 58.057 43.478 0.00 0.00 0.00 3.86
2094 2882 4.956700 TGACCCTATAAACAGAGACAGGAG 59.043 45.833 0.00 0.00 0.00 3.69
2095 2883 3.707102 ACCCTATAAACAGAGACAGGAGC 59.293 47.826 0.00 0.00 0.00 4.70
2096 2884 3.070302 CCCTATAAACAGAGACAGGAGCC 59.930 52.174 0.00 0.00 0.00 4.70
2097 2885 3.964031 CCTATAAACAGAGACAGGAGCCT 59.036 47.826 0.00 0.00 0.00 4.58
2108 2896 1.186200 CAGGAGCCTGTAGTGTAGCA 58.814 55.000 8.38 0.00 39.10 3.49
2109 2897 1.759445 CAGGAGCCTGTAGTGTAGCAT 59.241 52.381 8.38 0.00 39.10 3.79
2110 2898 2.035632 AGGAGCCTGTAGTGTAGCATC 58.964 52.381 0.00 0.00 0.00 3.91
2111 2899 1.757118 GGAGCCTGTAGTGTAGCATCA 59.243 52.381 0.00 0.00 0.00 3.07
2112 2900 2.168521 GGAGCCTGTAGTGTAGCATCAA 59.831 50.000 0.00 0.00 0.00 2.57
2113 2901 3.181461 GGAGCCTGTAGTGTAGCATCAAT 60.181 47.826 0.00 0.00 0.00 2.57
2114 2902 4.446371 GAGCCTGTAGTGTAGCATCAATT 58.554 43.478 0.00 0.00 0.00 2.32
2115 2903 5.453339 GGAGCCTGTAGTGTAGCATCAATTA 60.453 44.000 0.00 0.00 0.00 1.40
2116 2904 5.989477 AGCCTGTAGTGTAGCATCAATTAA 58.011 37.500 0.00 0.00 0.00 1.40
2117 2905 5.817816 AGCCTGTAGTGTAGCATCAATTAAC 59.182 40.000 0.00 0.00 0.00 2.01
2118 2906 5.817816 GCCTGTAGTGTAGCATCAATTAACT 59.182 40.000 0.00 0.00 0.00 2.24
2119 2907 6.984474 GCCTGTAGTGTAGCATCAATTAACTA 59.016 38.462 0.00 0.00 0.00 2.24
2120 2908 7.657761 GCCTGTAGTGTAGCATCAATTAACTAT 59.342 37.037 0.00 0.00 0.00 2.12
2121 2909 9.197694 CCTGTAGTGTAGCATCAATTAACTATC 57.802 37.037 0.00 0.00 0.00 2.08
2122 2910 9.197694 CTGTAGTGTAGCATCAATTAACTATCC 57.802 37.037 0.00 0.00 0.00 2.59
2123 2911 8.924303 TGTAGTGTAGCATCAATTAACTATCCT 58.076 33.333 0.00 0.00 0.00 3.24
2124 2912 9.197694 GTAGTGTAGCATCAATTAACTATCCTG 57.802 37.037 0.00 0.00 0.00 3.86
2125 2913 7.796054 AGTGTAGCATCAATTAACTATCCTGT 58.204 34.615 0.00 0.00 0.00 4.00
2126 2914 7.712639 AGTGTAGCATCAATTAACTATCCTGTG 59.287 37.037 0.00 0.00 0.00 3.66
2127 2915 6.992123 TGTAGCATCAATTAACTATCCTGTGG 59.008 38.462 0.00 0.00 0.00 4.17
2128 2916 6.006275 AGCATCAATTAACTATCCTGTGGT 57.994 37.500 0.00 0.00 0.00 4.16
2129 2917 6.426587 AGCATCAATTAACTATCCTGTGGTT 58.573 36.000 0.00 0.00 35.51 3.67
2130 2918 6.319658 AGCATCAATTAACTATCCTGTGGTTG 59.680 38.462 0.00 0.00 33.21 3.77
2131 2919 6.095440 GCATCAATTAACTATCCTGTGGTTGT 59.905 38.462 0.00 0.00 33.21 3.32
2132 2920 7.282224 GCATCAATTAACTATCCTGTGGTTGTA 59.718 37.037 0.00 0.00 33.21 2.41
2133 2921 8.612619 CATCAATTAACTATCCTGTGGTTGTAC 58.387 37.037 0.00 0.00 33.21 2.90
2134 2922 6.814644 TCAATTAACTATCCTGTGGTTGTACG 59.185 38.462 0.00 0.00 33.21 3.67
2135 2923 5.726980 TTAACTATCCTGTGGTTGTACGT 57.273 39.130 0.00 0.00 33.21 3.57
2136 2924 6.832520 TTAACTATCCTGTGGTTGTACGTA 57.167 37.500 0.00 0.00 33.21 3.57
2137 2925 4.978083 ACTATCCTGTGGTTGTACGTAG 57.022 45.455 0.00 0.00 0.00 3.51
2138 2926 2.667473 ATCCTGTGGTTGTACGTAGC 57.333 50.000 0.00 0.00 0.00 3.58
2139 2927 1.330234 TCCTGTGGTTGTACGTAGCA 58.670 50.000 0.00 0.00 0.00 3.49
2140 2928 1.897133 TCCTGTGGTTGTACGTAGCAT 59.103 47.619 0.00 0.00 0.00 3.79
2141 2929 3.090790 TCCTGTGGTTGTACGTAGCATA 58.909 45.455 0.00 0.00 0.00 3.14
2142 2930 3.129813 TCCTGTGGTTGTACGTAGCATAG 59.870 47.826 13.31 13.31 33.65 2.23
2143 2931 3.129813 CCTGTGGTTGTACGTAGCATAGA 59.870 47.826 18.68 2.64 35.18 1.98
2144 2932 4.202121 CCTGTGGTTGTACGTAGCATAGAT 60.202 45.833 18.68 0.00 35.18 1.98
2145 2933 5.333299 TGTGGTTGTACGTAGCATAGATT 57.667 39.130 0.00 0.00 0.00 2.40
2146 2934 6.453926 TGTGGTTGTACGTAGCATAGATTA 57.546 37.500 0.00 0.00 0.00 1.75
2147 2935 6.500910 TGTGGTTGTACGTAGCATAGATTAG 58.499 40.000 0.00 0.00 0.00 1.73
2148 2936 6.319405 TGTGGTTGTACGTAGCATAGATTAGA 59.681 38.462 0.00 0.00 0.00 2.10
2149 2937 6.636044 GTGGTTGTACGTAGCATAGATTAGAC 59.364 42.308 0.00 0.00 0.00 2.59
2150 2938 6.148264 GGTTGTACGTAGCATAGATTAGACC 58.852 44.000 0.00 0.00 0.00 3.85
2151 2939 5.954296 TGTACGTAGCATAGATTAGACCC 57.046 43.478 0.00 0.00 0.00 4.46
2152 2940 5.628130 TGTACGTAGCATAGATTAGACCCT 58.372 41.667 0.00 0.00 0.00 4.34
2153 2941 5.472478 TGTACGTAGCATAGATTAGACCCTG 59.528 44.000 0.00 0.00 0.00 4.45
2154 2942 4.471548 ACGTAGCATAGATTAGACCCTGT 58.528 43.478 0.00 0.00 0.00 4.00
2155 2943 4.894114 ACGTAGCATAGATTAGACCCTGTT 59.106 41.667 0.00 0.00 0.00 3.16
2156 2944 5.363005 ACGTAGCATAGATTAGACCCTGTTT 59.637 40.000 0.00 0.00 0.00 2.83
2157 2945 5.692204 CGTAGCATAGATTAGACCCTGTTTG 59.308 44.000 0.00 0.00 0.00 2.93
2158 2946 5.700402 AGCATAGATTAGACCCTGTTTGT 57.300 39.130 0.00 0.00 0.00 2.83
2159 2947 6.067217 AGCATAGATTAGACCCTGTTTGTT 57.933 37.500 0.00 0.00 0.00 2.83
2160 2948 6.485171 AGCATAGATTAGACCCTGTTTGTTT 58.515 36.000 0.00 0.00 0.00 2.83
2161 2949 6.599638 AGCATAGATTAGACCCTGTTTGTTTC 59.400 38.462 0.00 0.00 0.00 2.78
2162 2950 6.374333 GCATAGATTAGACCCTGTTTGTTTCA 59.626 38.462 0.00 0.00 0.00 2.69
2163 2951 7.067494 GCATAGATTAGACCCTGTTTGTTTCAT 59.933 37.037 0.00 0.00 0.00 2.57
2164 2952 9.613428 CATAGATTAGACCCTGTTTGTTTCATA 57.387 33.333 0.00 0.00 0.00 2.15
2166 2954 8.567285 AGATTAGACCCTGTTTGTTTCATAAG 57.433 34.615 0.00 0.00 0.00 1.73
2167 2955 8.164070 AGATTAGACCCTGTTTGTTTCATAAGT 58.836 33.333 0.00 0.00 0.00 2.24
2168 2956 7.739498 TTAGACCCTGTTTGTTTCATAAGTC 57.261 36.000 0.00 0.00 0.00 3.01
2169 2957 5.070685 AGACCCTGTTTGTTTCATAAGTCC 58.929 41.667 0.00 0.00 0.00 3.85
2170 2958 5.061721 ACCCTGTTTGTTTCATAAGTCCT 57.938 39.130 0.00 0.00 0.00 3.85
2171 2959 6.043938 AGACCCTGTTTGTTTCATAAGTCCTA 59.956 38.462 0.00 0.00 0.00 2.94
2172 2960 6.607019 ACCCTGTTTGTTTCATAAGTCCTAA 58.393 36.000 0.00 0.00 0.00 2.69
2173 2961 6.715264 ACCCTGTTTGTTTCATAAGTCCTAAG 59.285 38.462 0.00 0.00 0.00 2.18
2174 2962 6.940298 CCCTGTTTGTTTCATAAGTCCTAAGA 59.060 38.462 0.00 0.00 0.00 2.10
2175 2963 7.094762 CCCTGTTTGTTTCATAAGTCCTAAGAC 60.095 40.741 0.00 0.00 43.89 3.01
2216 3004 8.480133 CTTATAAGTCATAAGTCCCTACCTGT 57.520 38.462 4.18 0.00 40.84 4.00
2217 3005 8.849543 TTATAAGTCATAAGTCCCTACCTGTT 57.150 34.615 0.00 0.00 0.00 3.16
2218 3006 7.750947 ATAAGTCATAAGTCCCTACCTGTTT 57.249 36.000 0.00 0.00 0.00 2.83
2219 3007 5.422214 AGTCATAAGTCCCTACCTGTTTG 57.578 43.478 0.00 0.00 0.00 2.93
2220 3008 4.844655 AGTCATAAGTCCCTACCTGTTTGT 59.155 41.667 0.00 0.00 0.00 2.83
2221 3009 5.309806 AGTCATAAGTCCCTACCTGTTTGTT 59.690 40.000 0.00 0.00 0.00 2.83
2222 3010 6.002082 GTCATAAGTCCCTACCTGTTTGTTT 58.998 40.000 0.00 0.00 0.00 2.83
2223 3011 7.016858 AGTCATAAGTCCCTACCTGTTTGTTTA 59.983 37.037 0.00 0.00 0.00 2.01
2224 3012 7.827729 GTCATAAGTCCCTACCTGTTTGTTTAT 59.172 37.037 0.00 0.00 0.00 1.40
2225 3013 9.049050 TCATAAGTCCCTACCTGTTTGTTTATA 57.951 33.333 0.00 0.00 0.00 0.98
2226 3014 9.326413 CATAAGTCCCTACCTGTTTGTTTATAG 57.674 37.037 0.00 0.00 0.00 1.31
2227 3015 6.309389 AGTCCCTACCTGTTTGTTTATAGG 57.691 41.667 0.00 0.00 36.39 2.57
2231 3019 6.309389 CCTACCTGTTTGTTTATAGGGACT 57.691 41.667 0.00 0.00 46.37 3.85
2232 3020 6.718294 CCTACCTGTTTGTTTATAGGGACTT 58.282 40.000 0.00 0.00 41.75 3.01
2233 3021 7.854337 CCTACCTGTTTGTTTATAGGGACTTA 58.146 38.462 0.00 0.00 41.75 2.24
2234 3022 8.491958 CCTACCTGTTTGTTTATAGGGACTTAT 58.508 37.037 0.00 0.00 41.75 1.73
2237 3025 9.901172 ACCTGTTTGTTTATAGGGACTTATAAG 57.099 33.333 11.05 11.05 41.75 1.73
2238 3026 9.901172 CCTGTTTGTTTATAGGGACTTATAAGT 57.099 33.333 18.05 18.05 43.16 2.24
2248 3036 5.926663 AGGGACTTATAAGTTTCGAATCCC 58.073 41.667 18.96 20.12 39.88 3.85
2249 3037 5.666265 AGGGACTTATAAGTTTCGAATCCCT 59.334 40.000 23.66 23.66 39.88 4.20
2250 3038 6.842807 AGGGACTTATAAGTTTCGAATCCCTA 59.157 38.462 26.18 7.88 39.98 3.53
2251 3039 6.927936 GGGACTTATAAGTTTCGAATCCCTAC 59.072 42.308 18.96 4.88 39.88 3.18
2252 3040 6.927936 GGACTTATAAGTTTCGAATCCCTACC 59.072 42.308 18.96 7.36 39.88 3.18
2253 3041 7.201983 GGACTTATAAGTTTCGAATCCCTACCT 60.202 40.741 18.96 0.00 39.88 3.08
2254 3042 7.498443 ACTTATAAGTTTCGAATCCCTACCTG 58.502 38.462 12.50 0.00 35.21 4.00
2255 3043 5.952347 ATAAGTTTCGAATCCCTACCTGT 57.048 39.130 0.00 0.00 0.00 4.00
2256 3044 4.635699 AAGTTTCGAATCCCTACCTGTT 57.364 40.909 0.00 0.00 0.00 3.16
2257 3045 4.635699 AGTTTCGAATCCCTACCTGTTT 57.364 40.909 0.00 0.00 0.00 2.83
2258 3046 4.324267 AGTTTCGAATCCCTACCTGTTTG 58.676 43.478 0.00 0.00 0.00 2.93
2259 3047 4.070009 GTTTCGAATCCCTACCTGTTTGT 58.930 43.478 0.00 0.00 0.00 2.83
2260 3048 4.360951 TTCGAATCCCTACCTGTTTGTT 57.639 40.909 0.00 0.00 0.00 2.83
2261 3049 4.360951 TCGAATCCCTACCTGTTTGTTT 57.639 40.909 0.00 0.00 0.00 2.83
2262 3050 5.486735 TCGAATCCCTACCTGTTTGTTTA 57.513 39.130 0.00 0.00 0.00 2.01
2263 3051 5.240121 TCGAATCCCTACCTGTTTGTTTAC 58.760 41.667 0.00 0.00 0.00 2.01
2264 3052 4.998672 CGAATCCCTACCTGTTTGTTTACA 59.001 41.667 0.00 0.00 0.00 2.41
2265 3053 5.121768 CGAATCCCTACCTGTTTGTTTACAG 59.878 44.000 0.00 0.00 44.07 2.74
2277 3065 8.617290 CTGTTTGTTTACAGGGACTTATAAGT 57.383 34.615 18.05 18.05 41.43 2.24
2278 3066 8.718734 CTGTTTGTTTACAGGGACTTATAAGTC 58.281 37.037 29.84 29.84 43.68 3.01
2290 3078 3.938963 ACTTATAAGTCCATGTTGCACCG 59.061 43.478 12.50 0.00 32.86 4.94
2291 3079 1.094785 ATAAGTCCATGTTGCACCGC 58.905 50.000 0.00 0.00 0.00 5.68
2292 3080 0.036164 TAAGTCCATGTTGCACCGCT 59.964 50.000 0.00 0.00 0.00 5.52
2293 3081 1.518056 AAGTCCATGTTGCACCGCTG 61.518 55.000 0.00 0.00 0.00 5.18
2294 3082 3.364441 TCCATGTTGCACCGCTGC 61.364 61.111 0.00 0.00 44.52 5.25
2306 3094 3.485431 CGCTGCAACGAGGCTCAG 61.485 66.667 15.95 9.88 34.06 3.35
2307 3095 3.123620 GCTGCAACGAGGCTCAGG 61.124 66.667 15.95 4.00 34.04 3.86
2308 3096 2.659016 CTGCAACGAGGCTCAGGA 59.341 61.111 15.95 4.03 34.04 3.86
2309 3097 1.447489 CTGCAACGAGGCTCAGGAG 60.447 63.158 15.95 10.20 34.04 3.69
2310 3098 1.881903 CTGCAACGAGGCTCAGGAGA 61.882 60.000 15.95 0.00 34.04 3.71
2311 3099 1.153667 GCAACGAGGCTCAGGAGAG 60.154 63.158 15.95 0.00 44.96 3.20
2312 3100 1.515020 CAACGAGGCTCAGGAGAGG 59.485 63.158 15.95 0.00 42.33 3.69
2313 3101 1.684049 AACGAGGCTCAGGAGAGGG 60.684 63.158 15.95 0.00 42.33 4.30
2314 3102 3.535962 CGAGGCTCAGGAGAGGGC 61.536 72.222 15.95 0.00 42.33 5.19
2315 3103 2.042025 GAGGCTCAGGAGAGGGCT 60.042 66.667 10.25 0.00 42.33 5.19
2316 3104 1.688884 GAGGCTCAGGAGAGGGCTT 60.689 63.158 10.25 0.00 42.33 4.35
2317 3105 1.970352 GAGGCTCAGGAGAGGGCTTG 61.970 65.000 10.25 0.00 42.33 4.01
2318 3106 2.297129 GGCTCAGGAGAGGGCTTGT 61.297 63.158 0.00 0.00 42.33 3.16
2319 3107 1.220477 GCTCAGGAGAGGGCTTGTC 59.780 63.158 0.00 0.00 42.33 3.18
2320 3108 1.904032 CTCAGGAGAGGGCTTGTCC 59.096 63.158 4.45 4.45 38.26 4.02
2321 3109 1.954362 CTCAGGAGAGGGCTTGTCCG 61.954 65.000 7.17 3.11 38.26 4.79
2322 3110 2.685380 AGGAGAGGGCTTGTCCGG 60.685 66.667 7.17 0.00 35.33 5.14
2323 3111 3.003763 GGAGAGGGCTTGTCCGGT 61.004 66.667 0.00 0.00 34.94 5.28
2324 3112 2.266055 GAGAGGGCTTGTCCGGTG 59.734 66.667 0.00 0.00 34.94 4.94
2325 3113 2.203788 AGAGGGCTTGTCCGGTGA 60.204 61.111 0.00 0.00 34.94 4.02
2326 3114 1.613630 AGAGGGCTTGTCCGGTGAT 60.614 57.895 0.00 0.00 34.94 3.06
2327 3115 1.201429 AGAGGGCTTGTCCGGTGATT 61.201 55.000 0.00 0.00 34.94 2.57
2328 3116 1.002134 AGGGCTTGTCCGGTGATTG 60.002 57.895 0.00 0.00 34.94 2.67
2329 3117 2.046285 GGGCTTGTCCGGTGATTGG 61.046 63.158 0.00 0.00 34.94 3.16
2330 3118 1.002624 GGCTTGTCCGGTGATTGGA 60.003 57.895 0.00 0.00 0.00 3.53
2331 3119 1.026718 GGCTTGTCCGGTGATTGGAG 61.027 60.000 0.00 0.00 35.82 3.86
2332 3120 1.026718 GCTTGTCCGGTGATTGGAGG 61.027 60.000 0.00 0.00 35.82 4.30
2333 3121 1.002624 TTGTCCGGTGATTGGAGGC 60.003 57.895 0.00 0.00 35.82 4.70
2334 3122 1.773856 TTGTCCGGTGATTGGAGGCA 61.774 55.000 0.00 0.00 35.82 4.75
2335 3123 1.745489 GTCCGGTGATTGGAGGCAC 60.745 63.158 0.00 0.00 35.82 5.01
2338 3126 3.134127 GGTGATTGGAGGCACCGC 61.134 66.667 0.00 0.00 44.39 5.68
2339 3127 2.045926 GTGATTGGAGGCACCGCT 60.046 61.111 0.00 0.00 42.61 5.52
2340 3128 2.046023 TGATTGGAGGCACCGCTG 60.046 61.111 0.00 0.00 42.61 5.18
2341 3129 3.512516 GATTGGAGGCACCGCTGC 61.513 66.667 0.00 0.00 43.41 5.25
2342 3130 4.349503 ATTGGAGGCACCGCTGCA 62.350 61.111 4.88 0.00 46.28 4.41
2343 3131 3.866379 ATTGGAGGCACCGCTGCAA 62.866 57.895 4.88 1.06 46.28 4.08
2347 3135 4.927782 AGGCACCGCTGCAACGAA 62.928 61.111 11.83 0.00 46.28 3.85
2348 3136 4.683334 GGCACCGCTGCAACGAAC 62.683 66.667 11.83 0.00 46.28 3.95
2349 3137 4.683334 GCACCGCTGCAACGAACC 62.683 66.667 11.83 0.00 43.62 3.62
2350 3138 4.368808 CACCGCTGCAACGAACCG 62.369 66.667 11.83 0.00 34.06 4.44
2351 3139 4.595538 ACCGCTGCAACGAACCGA 62.596 61.111 11.83 0.00 34.06 4.69
2352 3140 3.777925 CCGCTGCAACGAACCGAG 61.778 66.667 11.83 0.00 34.06 4.63
2353 3141 3.036084 CGCTGCAACGAACCGAGT 61.036 61.111 2.68 0.00 34.06 4.18
2354 3142 2.853914 GCTGCAACGAACCGAGTC 59.146 61.111 0.00 0.00 0.00 3.36
2355 3143 1.954146 GCTGCAACGAACCGAGTCA 60.954 57.895 0.00 0.00 0.00 3.41
2356 3144 1.891060 GCTGCAACGAACCGAGTCAG 61.891 60.000 0.00 0.00 0.00 3.51
2357 3145 0.318699 CTGCAACGAACCGAGTCAGA 60.319 55.000 0.00 0.00 0.00 3.27
2358 3146 0.103390 TGCAACGAACCGAGTCAGAA 59.897 50.000 0.00 0.00 0.00 3.02
2359 3147 0.507358 GCAACGAACCGAGTCAGAAC 59.493 55.000 0.00 0.00 0.00 3.01
2360 3148 0.776451 CAACGAACCGAGTCAGAACG 59.224 55.000 0.00 0.00 0.00 3.95
2361 3149 0.664761 AACGAACCGAGTCAGAACGA 59.335 50.000 0.00 0.00 0.00 3.85
2362 3150 0.664761 ACGAACCGAGTCAGAACGAA 59.335 50.000 0.00 0.00 0.00 3.85
2363 3151 1.050767 CGAACCGAGTCAGAACGAAC 58.949 55.000 0.00 0.00 0.00 3.95
2364 3152 1.416373 GAACCGAGTCAGAACGAACC 58.584 55.000 0.00 0.00 0.00 3.62
2365 3153 0.318445 AACCGAGTCAGAACGAACCG 60.318 55.000 0.00 0.00 0.00 4.44
2366 3154 1.168407 ACCGAGTCAGAACGAACCGA 61.168 55.000 0.00 0.00 0.00 4.69
2367 3155 0.454620 CCGAGTCAGAACGAACCGAG 60.455 60.000 0.00 0.00 0.00 4.63
2368 3156 0.516001 CGAGTCAGAACGAACCGAGA 59.484 55.000 0.00 0.00 0.00 4.04
2369 3157 1.130749 CGAGTCAGAACGAACCGAGAT 59.869 52.381 0.00 0.00 0.00 2.75
2370 3158 2.788030 GAGTCAGAACGAACCGAGATC 58.212 52.381 0.00 0.00 0.00 2.75
2371 3159 1.130749 AGTCAGAACGAACCGAGATCG 59.869 52.381 0.00 0.00 45.47 3.69
2403 3191 3.857909 GGCGAACCGAGACAGAAC 58.142 61.111 0.00 0.00 0.00 3.01
2404 3192 2.087009 GGCGAACCGAGACAGAACG 61.087 63.158 0.00 0.00 0.00 3.95
2405 3193 1.081641 GCGAACCGAGACAGAACGA 60.082 57.895 0.00 0.00 0.00 3.85
2406 3194 0.662374 GCGAACCGAGACAGAACGAA 60.662 55.000 0.00 0.00 0.00 3.85
2407 3195 1.050767 CGAACCGAGACAGAACGAAC 58.949 55.000 0.00 0.00 0.00 3.95
2408 3196 1.416373 GAACCGAGACAGAACGAACC 58.584 55.000 0.00 0.00 0.00 3.62
2409 3197 0.318445 AACCGAGACAGAACGAACCG 60.318 55.000 0.00 0.00 0.00 4.44
2410 3198 1.168407 ACCGAGACAGAACGAACCGA 61.168 55.000 0.00 0.00 0.00 4.69
2411 3199 0.454620 CCGAGACAGAACGAACCGAG 60.455 60.000 0.00 0.00 0.00 4.63
2412 3200 0.454620 CGAGACAGAACGAACCGAGG 60.455 60.000 0.00 0.00 0.00 4.63
2413 3201 0.733223 GAGACAGAACGAACCGAGGC 60.733 60.000 0.00 0.00 0.00 4.70
2414 3202 2.049433 ACAGAACGAACCGAGGCG 60.049 61.111 0.00 0.00 0.00 5.52
2461 3249 3.110178 CGACGGGGCAGAACGAAC 61.110 66.667 0.00 0.00 0.00 3.95
2462 3250 2.741211 GACGGGGCAGAACGAACC 60.741 66.667 0.00 0.00 0.00 3.62
2463 3251 3.524648 GACGGGGCAGAACGAACCA 62.525 63.158 0.00 0.00 0.00 3.67
2464 3252 2.281208 CGGGGCAGAACGAACCAA 60.281 61.111 0.00 0.00 0.00 3.67
2465 3253 2.325082 CGGGGCAGAACGAACCAAG 61.325 63.158 0.00 0.00 0.00 3.61
2466 3254 1.971695 GGGGCAGAACGAACCAAGG 60.972 63.158 0.00 0.00 0.00 3.61
2467 3255 2.626780 GGGCAGAACGAACCAAGGC 61.627 63.158 0.00 0.00 0.00 4.35
2468 3256 2.556287 GCAGAACGAACCAAGGCG 59.444 61.111 0.00 0.00 0.00 5.52
2469 3257 2.966309 GCAGAACGAACCAAGGCGG 61.966 63.158 0.00 0.00 42.50 6.13
2470 3258 2.032071 AGAACGAACCAAGGCGGG 59.968 61.111 0.00 0.00 40.22 6.13
2471 3259 3.053896 GAACGAACCAAGGCGGGG 61.054 66.667 0.00 0.00 40.22 5.73
2549 3337 4.475135 GGGGAACGAGCCTGGAGC 62.475 72.222 0.00 0.00 44.25 4.70
2582 3370 2.110420 CGGCCCGGAATAAGTCCC 59.890 66.667 0.73 0.00 44.60 4.46
2583 3371 2.737881 CGGCCCGGAATAAGTCCCA 61.738 63.158 0.73 0.00 44.60 4.37
2584 3372 1.610873 GGCCCGGAATAAGTCCCAA 59.389 57.895 0.73 0.00 44.60 4.12
2585 3373 0.185175 GGCCCGGAATAAGTCCCAAT 59.815 55.000 0.73 0.00 44.60 3.16
2586 3374 1.422402 GGCCCGGAATAAGTCCCAATA 59.578 52.381 0.73 0.00 44.60 1.90
2587 3375 2.158579 GGCCCGGAATAAGTCCCAATAA 60.159 50.000 0.73 0.00 44.60 1.40
2588 3376 3.558033 GCCCGGAATAAGTCCCAATAAA 58.442 45.455 0.73 0.00 44.60 1.40
2589 3377 3.317149 GCCCGGAATAAGTCCCAATAAAC 59.683 47.826 0.73 0.00 44.60 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.489938 TTCGCTTTCACCAAGGCTAT 57.510 45.000 0.00 0.00 32.39 2.97
125 126 3.716872 AGAACTGGACAAGAGAAAAGGGA 59.283 43.478 0.00 0.00 0.00 4.20
161 162 5.530171 CACTTCATACCCATTCAGATTCCAG 59.470 44.000 0.00 0.00 0.00 3.86
176 177 6.291849 CGTAGCTTGCTATCAACACTTCATAC 60.292 42.308 5.59 0.00 0.00 2.39
229 230 0.033920 CAAGCCAACCTTTCCCTTGC 59.966 55.000 0.00 0.00 0.00 4.01
338 342 9.736023 CCTTAATTTTCATTACTACAAGATGGC 57.264 33.333 0.00 0.00 0.00 4.40
378 386 4.213270 CAGAAACTGTGCGGTAGAATTCAA 59.787 41.667 8.44 0.00 0.00 2.69
381 389 3.740115 ACAGAAACTGTGCGGTAGAATT 58.260 40.909 3.54 0.00 43.63 2.17
505 518 0.037232 GCTTACGCCTGTCTGTCCTT 60.037 55.000 0.00 0.00 0.00 3.36
522 849 0.108662 GCGCTTATTTTTGGGCAGCT 60.109 50.000 0.00 0.00 41.00 4.24
546 873 1.147153 GGCCTGCCACCACTATCTC 59.853 63.158 2.58 0.00 35.81 2.75
567 894 5.195001 TGTTTTGTTGATAGCCTTGAACC 57.805 39.130 0.00 0.00 0.00 3.62
576 903 4.142600 GCTGGCTACCTGTTTTGTTGATAG 60.143 45.833 0.00 0.00 0.00 2.08
577 904 3.756434 GCTGGCTACCTGTTTTGTTGATA 59.244 43.478 0.00 0.00 0.00 2.15
578 905 2.558359 GCTGGCTACCTGTTTTGTTGAT 59.442 45.455 0.00 0.00 0.00 2.57
579 906 1.953686 GCTGGCTACCTGTTTTGTTGA 59.046 47.619 0.00 0.00 0.00 3.18
615 944 3.192212 GGGATGAAAGAGAGCAAAACAGG 59.808 47.826 0.00 0.00 0.00 4.00
620 949 3.843027 AGAGAGGGATGAAAGAGAGCAAA 59.157 43.478 0.00 0.00 0.00 3.68
623 952 4.190772 CAAAGAGAGGGATGAAAGAGAGC 58.809 47.826 0.00 0.00 0.00 4.09
624 953 4.190772 GCAAAGAGAGGGATGAAAGAGAG 58.809 47.826 0.00 0.00 0.00 3.20
625 954 3.054802 GGCAAAGAGAGGGATGAAAGAGA 60.055 47.826 0.00 0.00 0.00 3.10
626 955 3.277715 GGCAAAGAGAGGGATGAAAGAG 58.722 50.000 0.00 0.00 0.00 2.85
627 956 2.355108 CGGCAAAGAGAGGGATGAAAGA 60.355 50.000 0.00 0.00 0.00 2.52
628 957 2.012673 CGGCAAAGAGAGGGATGAAAG 58.987 52.381 0.00 0.00 0.00 2.62
629 958 1.340017 CCGGCAAAGAGAGGGATGAAA 60.340 52.381 0.00 0.00 0.00 2.69
630 959 0.253044 CCGGCAAAGAGAGGGATGAA 59.747 55.000 0.00 0.00 0.00 2.57
631 960 1.907739 CCGGCAAAGAGAGGGATGA 59.092 57.895 0.00 0.00 0.00 2.92
632 961 1.821332 GCCGGCAAAGAGAGGGATG 60.821 63.158 24.80 0.00 0.00 3.51
633 962 1.997874 AGCCGGCAAAGAGAGGGAT 60.998 57.895 31.54 0.00 0.00 3.85
634 963 2.607750 AGCCGGCAAAGAGAGGGA 60.608 61.111 31.54 0.00 0.00 4.20
635 964 2.437359 CAGCCGGCAAAGAGAGGG 60.437 66.667 31.54 1.87 0.00 4.30
636 965 3.130160 GCAGCCGGCAAAGAGAGG 61.130 66.667 31.54 8.05 43.97 3.69
647 976 2.777972 CCAATGTGGATGGCAGCCG 61.778 63.158 18.16 1.59 40.96 5.52
654 983 2.916702 TCGAGATCCCAATGTGGATG 57.083 50.000 7.78 0.00 45.25 3.51
689 1018 2.582436 GCCTTGCCCTACGCTACA 59.418 61.111 0.00 0.00 38.78 2.74
711 1041 0.964358 CAGGGCAGCCTGAGAAAAGG 60.964 60.000 12.43 0.00 39.96 3.11
713 1043 1.604593 GCAGGGCAGCCTGAGAAAA 60.605 57.895 12.43 0.00 39.96 2.29
714 1044 2.034687 GCAGGGCAGCCTGAGAAA 59.965 61.111 12.43 0.00 39.96 2.52
716 1046 3.714001 CAGCAGGGCAGCCTGAGA 61.714 66.667 12.43 0.00 39.96 3.27
723 1053 3.429141 CTTGACGCAGCAGGGCAG 61.429 66.667 0.00 0.00 0.00 4.85
724 1054 4.254709 ACTTGACGCAGCAGGGCA 62.255 61.111 0.00 0.00 0.00 5.36
725 1055 3.730761 CACTTGACGCAGCAGGGC 61.731 66.667 0.00 0.00 0.00 5.19
726 1056 2.281070 ACACTTGACGCAGCAGGG 60.281 61.111 0.00 0.00 0.00 4.45
727 1057 0.882042 AAGACACTTGACGCAGCAGG 60.882 55.000 0.00 0.00 0.00 4.85
728 1058 0.510359 GAAGACACTTGACGCAGCAG 59.490 55.000 0.00 0.00 0.00 4.24
729 1059 0.104855 AGAAGACACTTGACGCAGCA 59.895 50.000 0.00 0.00 0.00 4.41
730 1060 0.510359 CAGAAGACACTTGACGCAGC 59.490 55.000 0.00 0.00 0.00 5.25
731 1061 1.789464 GACAGAAGACACTTGACGCAG 59.211 52.381 0.00 0.00 0.00 5.18
732 1062 1.852942 GACAGAAGACACTTGACGCA 58.147 50.000 0.00 0.00 0.00 5.24
733 1063 0.778815 CGACAGAAGACACTTGACGC 59.221 55.000 0.00 0.00 0.00 5.19
741 1071 0.750249 TTCACCTGCGACAGAAGACA 59.250 50.000 8.20 0.00 32.44 3.41
742 1072 1.996191 GATTCACCTGCGACAGAAGAC 59.004 52.381 8.20 0.00 32.44 3.01
745 1075 0.389817 CCGATTCACCTGCGACAGAA 60.390 55.000 8.20 0.00 32.44 3.02
782 1113 2.230266 GGTAGCCGAAATCCAGCAAAAA 59.770 45.455 0.00 0.00 0.00 1.94
785 1116 0.618458 AGGTAGCCGAAATCCAGCAA 59.382 50.000 0.00 0.00 0.00 3.91
795 1126 1.040646 CCTTATCTGCAGGTAGCCGA 58.959 55.000 15.13 0.00 44.83 5.54
803 1134 1.512996 CCATGCCGCCTTATCTGCAG 61.513 60.000 7.63 7.63 37.12 4.41
804 1135 1.526686 CCATGCCGCCTTATCTGCA 60.527 57.895 0.00 0.00 38.23 4.41
805 1136 2.912624 GCCATGCCGCCTTATCTGC 61.913 63.158 0.00 0.00 0.00 4.26
826 1157 4.347583 AGAGGAGATCAGCTAAATCCCAAG 59.652 45.833 0.00 0.00 0.00 3.61
830 1161 4.588528 ACAGAGAGGAGATCAGCTAAATCC 59.411 45.833 0.00 2.26 0.00 3.01
837 1168 2.760092 AGACAACAGAGAGGAGATCAGC 59.240 50.000 0.00 0.00 0.00 4.26
838 1169 3.429272 GCAGACAACAGAGAGGAGATCAG 60.429 52.174 0.00 0.00 0.00 2.90
860 1191 0.321919 TGTTAAGCCAGCCAGCAGAG 60.322 55.000 0.00 0.00 34.23 3.35
865 1196 2.440409 ACTTCATGTTAAGCCAGCCAG 58.560 47.619 0.00 0.00 0.00 4.85
866 1197 2.584835 ACTTCATGTTAAGCCAGCCA 57.415 45.000 0.00 0.00 0.00 4.75
867 1198 3.942130 AAACTTCATGTTAAGCCAGCC 57.058 42.857 0.00 0.00 38.03 4.85
868 1199 4.870363 TGAAAACTTCATGTTAAGCCAGC 58.130 39.130 0.00 0.00 38.03 4.85
888 1219 4.345257 GCTATTAGATCCCTCCTGTGTTGA 59.655 45.833 0.00 0.00 0.00 3.18
893 1224 3.515562 CCAGCTATTAGATCCCTCCTGT 58.484 50.000 0.00 0.00 0.00 4.00
899 1230 5.495640 CAAGAATCCCAGCTATTAGATCCC 58.504 45.833 0.00 0.00 0.00 3.85
900 1231 5.013599 ACCAAGAATCCCAGCTATTAGATCC 59.986 44.000 0.00 0.00 0.00 3.36
914 1245 0.394352 ATCGGTGCCACCAAGAATCC 60.394 55.000 15.45 0.00 38.47 3.01
929 1261 3.485877 GCTTTGAATCCTTTCGTGATCGG 60.486 47.826 0.00 0.00 37.69 4.18
974 1316 1.666872 ACGCTTAGGTTCCGTGTGC 60.667 57.895 0.00 0.00 33.46 4.57
992 1334 0.323087 AGTGATTGCCATCAGCTGCA 60.323 50.000 9.47 0.00 40.28 4.41
994 1336 1.746470 TCAGTGATTGCCATCAGCTG 58.254 50.000 7.63 7.63 40.28 4.24
998 1340 3.483421 GGATCATCAGTGATTGCCATCA 58.517 45.455 1.86 0.00 44.96 3.07
1007 1349 4.142071 CCTCTTTCTTCGGATCATCAGTGA 60.142 45.833 0.00 0.00 39.04 3.41
1026 1368 1.067295 TGGACCAAGTTGATGCCTCT 58.933 50.000 3.87 0.00 0.00 3.69
1030 1372 7.361116 CCAATTAAAAATGGACCAAGTTGATGC 60.361 37.037 3.87 0.00 39.12 3.91
1032 1374 7.972301 TCCAATTAAAAATGGACCAAGTTGAT 58.028 30.769 3.87 0.00 40.74 2.57
1036 1378 9.719355 GTTATTCCAATTAAAAATGGACCAAGT 57.281 29.630 0.00 0.00 45.14 3.16
1078 1423 1.076705 GGATGCAGGAAACCCCCTC 60.077 63.158 0.00 0.00 33.38 4.30
1086 1431 1.272092 CCTTGGAACTGGATGCAGGAA 60.272 52.381 19.22 4.85 0.00 3.36
1098 1443 3.317149 GTGGTTGTTTCTACCCTTGGAAC 59.683 47.826 0.00 0.00 34.66 3.62
1107 1452 2.670019 AAGGGGGTGGTTGTTTCTAC 57.330 50.000 0.00 0.00 0.00 2.59
1139 1491 6.982852 TGGTAGCAGATAGTAGTTAGCATTC 58.017 40.000 0.00 0.00 0.00 2.67
1261 1962 5.846714 AGACAAGCAATATAGGGGTAGATGT 59.153 40.000 0.00 0.00 0.00 3.06
1265 1966 6.226787 CAAGAGACAAGCAATATAGGGGTAG 58.773 44.000 0.00 0.00 0.00 3.18
1423 2124 5.011329 TCAAGATTTACCGTACTCACTTGGT 59.989 40.000 0.00 0.00 38.51 3.67
1429 2130 4.216042 TGTCGTCAAGATTTACCGTACTCA 59.784 41.667 0.00 0.00 0.00 3.41
1590 2291 0.796312 CCGGACGATTGGTTTGTGAG 59.204 55.000 0.00 0.00 0.00 3.51
1594 2295 1.396996 GATGACCGGACGATTGGTTTG 59.603 52.381 9.46 0.00 38.99 2.93
1644 2347 7.850935 TCCCTCCGTTTCATAATATAAGAGT 57.149 36.000 0.00 0.00 0.00 3.24
1708 2412 3.103738 GTTTCATTTAGCATGCGCAGAG 58.896 45.455 18.32 12.59 42.27 3.35
1732 2436 3.072211 GCTAAAAGGTAGCGTCTTGGTT 58.928 45.455 0.00 0.00 0.00 3.67
1734 2438 2.695359 TGCTAAAAGGTAGCGTCTTGG 58.305 47.619 1.25 0.00 43.13 3.61
1742 2446 4.394729 TCCCACTTGTTGCTAAAAGGTAG 58.605 43.478 3.08 0.00 0.00 3.18
1744 2448 3.306472 TCCCACTTGTTGCTAAAAGGT 57.694 42.857 3.08 0.00 0.00 3.50
1809 2517 1.063717 AGCCATCCCCATCACGAAATT 60.064 47.619 0.00 0.00 0.00 1.82
1811 2519 0.394216 CAGCCATCCCCATCACGAAA 60.394 55.000 0.00 0.00 0.00 3.46
1813 2521 1.688884 TCAGCCATCCCCATCACGA 60.689 57.895 0.00 0.00 0.00 4.35
1822 2531 2.509336 CACGGTCGTCAGCCATCC 60.509 66.667 0.00 0.00 0.00 3.51
1872 2581 7.432545 CGTCCAAGATAAGAGTTAGTACATGTG 59.567 40.741 9.11 0.00 0.00 3.21
1873 2582 7.416438 CCGTCCAAGATAAGAGTTAGTACATGT 60.416 40.741 2.69 2.69 0.00 3.21
1874 2583 6.918569 CCGTCCAAGATAAGAGTTAGTACATG 59.081 42.308 0.00 0.00 0.00 3.21
1875 2584 6.832384 TCCGTCCAAGATAAGAGTTAGTACAT 59.168 38.462 0.00 0.00 0.00 2.29
1877 2586 6.690194 TCCGTCCAAGATAAGAGTTAGTAC 57.310 41.667 0.00 0.00 0.00 2.73
1883 2670 6.099845 ACCATTTATCCGTCCAAGATAAGAGT 59.900 38.462 0.00 0.00 37.47 3.24
1892 2679 3.181473 CCTCGTACCATTTATCCGTCCAA 60.181 47.826 0.00 0.00 0.00 3.53
2004 2791 1.412710 GCCTAACCTCATCGATGGACA 59.587 52.381 24.61 5.34 0.00 4.02
2011 2798 1.683917 AGTAGCAGCCTAACCTCATCG 59.316 52.381 0.00 0.00 0.00 3.84
2029 2816 3.487372 GCAAGTGGAAAAGGGAACTAGT 58.513 45.455 0.00 0.00 42.68 2.57
2058 2846 2.427742 GGGTCATACTCCCTCCGTC 58.572 63.158 0.00 0.00 41.58 4.79
2059 2847 4.701286 GGGTCATACTCCCTCCGT 57.299 61.111 0.00 0.00 41.58 4.69
2064 2852 6.015265 GTCTCTGTTTATAGGGTCATACTCCC 60.015 46.154 0.00 0.00 44.90 4.30
2065 2853 6.550108 TGTCTCTGTTTATAGGGTCATACTCC 59.450 42.308 0.00 0.00 0.00 3.85
2066 2854 7.255660 CCTGTCTCTGTTTATAGGGTCATACTC 60.256 44.444 0.00 0.00 0.00 2.59
2067 2855 6.551601 CCTGTCTCTGTTTATAGGGTCATACT 59.448 42.308 0.00 0.00 0.00 2.12
2068 2856 6.550108 TCCTGTCTCTGTTTATAGGGTCATAC 59.450 42.308 0.00 0.00 0.00 2.39
2069 2857 6.679542 TCCTGTCTCTGTTTATAGGGTCATA 58.320 40.000 0.00 0.00 0.00 2.15
2070 2858 5.529289 TCCTGTCTCTGTTTATAGGGTCAT 58.471 41.667 0.00 0.00 0.00 3.06
2071 2859 4.942944 TCCTGTCTCTGTTTATAGGGTCA 58.057 43.478 0.00 0.00 0.00 4.02
2072 2860 4.202172 GCTCCTGTCTCTGTTTATAGGGTC 60.202 50.000 0.00 0.00 0.00 4.46
2073 2861 3.707102 GCTCCTGTCTCTGTTTATAGGGT 59.293 47.826 0.00 0.00 0.00 4.34
2074 2862 3.070302 GGCTCCTGTCTCTGTTTATAGGG 59.930 52.174 0.00 0.00 0.00 3.53
2075 2863 3.964031 AGGCTCCTGTCTCTGTTTATAGG 59.036 47.826 0.00 0.00 0.00 2.57
2076 2864 4.942852 CAGGCTCCTGTCTCTGTTTATAG 58.057 47.826 7.75 0.00 39.10 1.31
2078 2866 3.902881 CAGGCTCCTGTCTCTGTTTAT 57.097 47.619 7.75 0.00 39.10 1.40
2090 2878 2.035632 GATGCTACACTACAGGCTCCT 58.964 52.381 0.00 0.00 0.00 3.69
2091 2879 1.757118 TGATGCTACACTACAGGCTCC 59.243 52.381 0.00 0.00 0.00 4.70
2092 2880 3.526931 TTGATGCTACACTACAGGCTC 57.473 47.619 0.00 0.00 0.00 4.70
2093 2881 4.494091 AATTGATGCTACACTACAGGCT 57.506 40.909 0.00 0.00 0.00 4.58
2094 2882 5.817816 AGTTAATTGATGCTACACTACAGGC 59.182 40.000 0.00 0.00 0.00 4.85
2095 2883 9.197694 GATAGTTAATTGATGCTACACTACAGG 57.802 37.037 0.00 0.00 0.00 4.00
2096 2884 9.197694 GGATAGTTAATTGATGCTACACTACAG 57.802 37.037 0.00 0.00 0.00 2.74
2097 2885 8.924303 AGGATAGTTAATTGATGCTACACTACA 58.076 33.333 0.00 0.00 0.00 2.74
2098 2886 9.197694 CAGGATAGTTAATTGATGCTACACTAC 57.802 37.037 0.00 0.00 0.00 2.73
2099 2887 8.924303 ACAGGATAGTTAATTGATGCTACACTA 58.076 33.333 0.00 0.00 0.00 2.74
2100 2888 7.712639 CACAGGATAGTTAATTGATGCTACACT 59.287 37.037 0.00 0.00 0.00 3.55
2101 2889 7.041780 CCACAGGATAGTTAATTGATGCTACAC 60.042 40.741 0.00 0.00 0.00 2.90
2102 2890 6.992123 CCACAGGATAGTTAATTGATGCTACA 59.008 38.462 0.00 0.00 0.00 2.74
2103 2891 6.992715 ACCACAGGATAGTTAATTGATGCTAC 59.007 38.462 0.00 0.00 0.00 3.58
2104 2892 7.136822 ACCACAGGATAGTTAATTGATGCTA 57.863 36.000 0.00 0.00 0.00 3.49
2105 2893 6.006275 ACCACAGGATAGTTAATTGATGCT 57.994 37.500 0.00 0.00 0.00 3.79
2106 2894 6.095440 ACAACCACAGGATAGTTAATTGATGC 59.905 38.462 0.00 0.00 0.00 3.91
2107 2895 7.630242 ACAACCACAGGATAGTTAATTGATG 57.370 36.000 0.00 0.00 0.00 3.07
2108 2896 7.494625 CGTACAACCACAGGATAGTTAATTGAT 59.505 37.037 0.00 0.00 0.00 2.57
2109 2897 6.814644 CGTACAACCACAGGATAGTTAATTGA 59.185 38.462 0.00 0.00 0.00 2.57
2110 2898 6.592607 ACGTACAACCACAGGATAGTTAATTG 59.407 38.462 0.00 0.00 0.00 2.32
2111 2899 6.704310 ACGTACAACCACAGGATAGTTAATT 58.296 36.000 0.00 0.00 0.00 1.40
2112 2900 6.290294 ACGTACAACCACAGGATAGTTAAT 57.710 37.500 0.00 0.00 0.00 1.40
2113 2901 5.726980 ACGTACAACCACAGGATAGTTAA 57.273 39.130 0.00 0.00 0.00 2.01
2114 2902 5.163622 GCTACGTACAACCACAGGATAGTTA 60.164 44.000 0.00 0.00 0.00 2.24
2115 2903 4.381292 GCTACGTACAACCACAGGATAGTT 60.381 45.833 0.00 0.00 0.00 2.24
2116 2904 3.129988 GCTACGTACAACCACAGGATAGT 59.870 47.826 0.00 0.00 0.00 2.12
2117 2905 3.129813 TGCTACGTACAACCACAGGATAG 59.870 47.826 0.00 0.00 0.00 2.08
2118 2906 3.090790 TGCTACGTACAACCACAGGATA 58.909 45.455 0.00 0.00 0.00 2.59
2119 2907 1.897133 TGCTACGTACAACCACAGGAT 59.103 47.619 0.00 0.00 0.00 3.24
2120 2908 1.330234 TGCTACGTACAACCACAGGA 58.670 50.000 0.00 0.00 0.00 3.86
2121 2909 2.380084 ATGCTACGTACAACCACAGG 57.620 50.000 0.00 0.00 0.00 4.00
2122 2910 4.365899 TCTATGCTACGTACAACCACAG 57.634 45.455 0.00 0.00 0.00 3.66
2123 2911 4.994907 ATCTATGCTACGTACAACCACA 57.005 40.909 0.00 0.00 0.00 4.17
2124 2912 6.636044 GTCTAATCTATGCTACGTACAACCAC 59.364 42.308 0.00 0.00 0.00 4.16
2125 2913 6.238842 GGTCTAATCTATGCTACGTACAACCA 60.239 42.308 0.00 0.00 0.00 3.67
2126 2914 6.148264 GGTCTAATCTATGCTACGTACAACC 58.852 44.000 0.00 0.00 0.00 3.77
2127 2915 6.016443 AGGGTCTAATCTATGCTACGTACAAC 60.016 42.308 0.00 0.00 0.00 3.32
2128 2916 6.016527 CAGGGTCTAATCTATGCTACGTACAA 60.017 42.308 0.00 0.00 0.00 2.41
2129 2917 5.472478 CAGGGTCTAATCTATGCTACGTACA 59.528 44.000 0.00 0.00 0.00 2.90
2130 2918 5.472820 ACAGGGTCTAATCTATGCTACGTAC 59.527 44.000 0.00 0.00 0.00 3.67
2131 2919 5.628130 ACAGGGTCTAATCTATGCTACGTA 58.372 41.667 0.00 0.00 0.00 3.57
2132 2920 4.471548 ACAGGGTCTAATCTATGCTACGT 58.528 43.478 0.00 0.00 0.00 3.57
2133 2921 5.455056 AACAGGGTCTAATCTATGCTACG 57.545 43.478 0.00 0.00 0.00 3.51
2134 2922 6.583562 ACAAACAGGGTCTAATCTATGCTAC 58.416 40.000 0.00 0.00 0.00 3.58
2135 2923 6.808321 ACAAACAGGGTCTAATCTATGCTA 57.192 37.500 0.00 0.00 0.00 3.49
2136 2924 5.700402 ACAAACAGGGTCTAATCTATGCT 57.300 39.130 0.00 0.00 0.00 3.79
2137 2925 6.374333 TGAAACAAACAGGGTCTAATCTATGC 59.626 38.462 0.00 0.00 0.00 3.14
2138 2926 7.921786 TGAAACAAACAGGGTCTAATCTATG 57.078 36.000 0.00 0.00 0.00 2.23
2140 2928 9.667107 CTTATGAAACAAACAGGGTCTAATCTA 57.333 33.333 0.00 0.00 0.00 1.98
2141 2929 8.164070 ACTTATGAAACAAACAGGGTCTAATCT 58.836 33.333 0.00 0.00 0.00 2.40
2142 2930 8.336801 ACTTATGAAACAAACAGGGTCTAATC 57.663 34.615 0.00 0.00 0.00 1.75
2143 2931 7.393515 GGACTTATGAAACAAACAGGGTCTAAT 59.606 37.037 0.00 0.00 0.00 1.73
2144 2932 6.713450 GGACTTATGAAACAAACAGGGTCTAA 59.287 38.462 0.00 0.00 0.00 2.10
2145 2933 6.043938 AGGACTTATGAAACAAACAGGGTCTA 59.956 38.462 0.00 0.00 0.00 2.59
2146 2934 5.070685 GGACTTATGAAACAAACAGGGTCT 58.929 41.667 0.00 0.00 0.00 3.85
2147 2935 5.070685 AGGACTTATGAAACAAACAGGGTC 58.929 41.667 0.00 0.00 0.00 4.46
2148 2936 5.061721 AGGACTTATGAAACAAACAGGGT 57.938 39.130 0.00 0.00 0.00 4.34
2149 2937 6.940298 TCTTAGGACTTATGAAACAAACAGGG 59.060 38.462 0.00 0.00 0.00 4.45
2150 2938 7.807680 GTCTTAGGACTTATGAAACAAACAGG 58.192 38.462 0.00 0.00 39.24 4.00
2192 2980 8.849543 AACAGGTAGGGACTTATGACTTATAA 57.150 34.615 0.00 0.00 41.75 0.98
2193 2981 8.701895 CAAACAGGTAGGGACTTATGACTTATA 58.298 37.037 0.00 0.00 41.75 0.98
2194 2982 7.182206 ACAAACAGGTAGGGACTTATGACTTAT 59.818 37.037 0.00 0.00 41.75 1.73
2195 2983 6.499350 ACAAACAGGTAGGGACTTATGACTTA 59.501 38.462 0.00 0.00 41.75 2.24
2196 2984 5.309806 ACAAACAGGTAGGGACTTATGACTT 59.690 40.000 0.00 0.00 41.75 3.01
2197 2985 4.844655 ACAAACAGGTAGGGACTTATGACT 59.155 41.667 0.00 0.00 41.75 3.41
2198 2986 5.161943 ACAAACAGGTAGGGACTTATGAC 57.838 43.478 0.00 0.00 41.75 3.06
2199 2987 5.836024 AACAAACAGGTAGGGACTTATGA 57.164 39.130 0.00 0.00 41.75 2.15
2200 2988 9.326413 CTATAAACAAACAGGTAGGGACTTATG 57.674 37.037 0.00 0.00 41.75 1.90
2201 2989 8.491958 CCTATAAACAAACAGGTAGGGACTTAT 58.508 37.037 0.00 0.00 41.75 1.73
2202 2990 7.854337 CCTATAAACAAACAGGTAGGGACTTA 58.146 38.462 0.00 0.00 41.75 2.24
2203 2991 6.718294 CCTATAAACAAACAGGTAGGGACTT 58.282 40.000 0.00 0.00 41.75 3.01
2204 2992 6.309389 CCTATAAACAAACAGGTAGGGACT 57.691 41.667 0.00 0.00 46.37 3.85
2207 2995 5.191124 AGTCCCTATAAACAAACAGGTAGGG 59.809 44.000 8.63 8.63 46.31 3.53
2208 2996 6.309389 AGTCCCTATAAACAAACAGGTAGG 57.691 41.667 0.00 0.00 0.00 3.18
2211 2999 9.901172 CTTATAAGTCCCTATAAACAAACAGGT 57.099 33.333 4.18 0.00 0.00 4.00
2212 3000 9.901172 ACTTATAAGTCCCTATAAACAAACAGG 57.099 33.333 12.50 0.00 32.86 4.00
2222 3010 8.810041 GGGATTCGAAACTTATAAGTCCCTATA 58.190 37.037 18.28 4.10 38.57 1.31
2223 3011 7.513091 AGGGATTCGAAACTTATAAGTCCCTAT 59.487 37.037 26.18 14.52 39.98 2.57
2224 3012 6.842807 AGGGATTCGAAACTTATAAGTCCCTA 59.157 38.462 26.18 11.38 39.98 3.53
2225 3013 5.666265 AGGGATTCGAAACTTATAAGTCCCT 59.334 40.000 23.66 23.66 38.13 4.20
2226 3014 5.926663 AGGGATTCGAAACTTATAAGTCCC 58.073 41.667 20.93 20.93 38.57 4.46
2227 3015 6.927936 GGTAGGGATTCGAAACTTATAAGTCC 59.072 42.308 18.28 12.56 38.57 3.85
2228 3016 7.652507 CAGGTAGGGATTCGAAACTTATAAGTC 59.347 40.741 18.28 6.43 38.57 3.01
2229 3017 7.125356 ACAGGTAGGGATTCGAAACTTATAAGT 59.875 37.037 12.50 12.50 42.04 2.24
2230 3018 7.498443 ACAGGTAGGGATTCGAAACTTATAAG 58.502 38.462 11.05 11.05 0.00 1.73
2231 3019 7.427989 ACAGGTAGGGATTCGAAACTTATAA 57.572 36.000 0.00 0.00 0.00 0.98
2232 3020 7.427989 AACAGGTAGGGATTCGAAACTTATA 57.572 36.000 0.00 0.00 0.00 0.98
2233 3021 5.952347 ACAGGTAGGGATTCGAAACTTAT 57.048 39.130 0.00 0.00 0.00 1.73
2234 3022 5.750352 AACAGGTAGGGATTCGAAACTTA 57.250 39.130 0.00 0.00 0.00 2.24
2235 3023 4.635699 AACAGGTAGGGATTCGAAACTT 57.364 40.909 0.00 0.00 0.00 2.66
2236 3024 4.202430 ACAAACAGGTAGGGATTCGAAACT 60.202 41.667 0.00 3.72 0.00 2.66
2237 3025 4.070009 ACAAACAGGTAGGGATTCGAAAC 58.930 43.478 0.00 0.00 0.00 2.78
2238 3026 4.360951 ACAAACAGGTAGGGATTCGAAA 57.639 40.909 0.00 0.00 0.00 3.46
2239 3027 4.360951 AACAAACAGGTAGGGATTCGAA 57.639 40.909 0.00 0.00 0.00 3.71
2240 3028 4.360951 AAACAAACAGGTAGGGATTCGA 57.639 40.909 0.00 0.00 0.00 3.71
2241 3029 4.998672 TGTAAACAAACAGGTAGGGATTCG 59.001 41.667 0.00 0.00 0.00 3.34
2242 3030 6.496338 CTGTAAACAAACAGGTAGGGATTC 57.504 41.667 0.00 0.00 42.63 2.52
2252 3040 8.617290 ACTTATAAGTCCCTGTAAACAAACAG 57.383 34.615 12.50 0.00 39.86 3.16
2267 3055 4.034048 CGGTGCAACATGGACTTATAAGTC 59.966 45.833 29.84 29.84 46.83 3.01
2268 3056 3.938963 CGGTGCAACATGGACTTATAAGT 59.061 43.478 18.05 18.05 38.83 2.24
2269 3057 3.242739 GCGGTGCAACATGGACTTATAAG 60.243 47.826 11.05 11.05 38.83 1.73
2270 3058 2.680841 GCGGTGCAACATGGACTTATAA 59.319 45.455 0.98 0.00 38.83 0.98
2271 3059 2.093181 AGCGGTGCAACATGGACTTATA 60.093 45.455 0.98 0.00 38.83 0.98
2272 3060 1.094785 GCGGTGCAACATGGACTTAT 58.905 50.000 0.98 0.00 38.83 1.73
2273 3061 0.036164 AGCGGTGCAACATGGACTTA 59.964 50.000 0.98 0.00 38.83 2.24
2274 3062 1.228245 AGCGGTGCAACATGGACTT 60.228 52.632 0.98 0.00 38.83 3.01
2275 3063 1.968017 CAGCGGTGCAACATGGACT 60.968 57.895 0.98 0.00 38.83 3.85
2276 3064 2.562912 CAGCGGTGCAACATGGAC 59.437 61.111 0.98 0.00 39.98 4.02
2289 3077 3.485431 CTGAGCCTCGTTGCAGCG 61.485 66.667 17.58 17.58 0.00 5.18
2290 3078 3.123620 CCTGAGCCTCGTTGCAGC 61.124 66.667 0.00 0.00 0.00 5.25
2291 3079 1.447489 CTCCTGAGCCTCGTTGCAG 60.447 63.158 2.08 0.00 0.00 4.41
2292 3080 1.881903 CTCTCCTGAGCCTCGTTGCA 61.882 60.000 2.08 0.00 33.12 4.08
2293 3081 1.153667 CTCTCCTGAGCCTCGTTGC 60.154 63.158 0.00 0.00 33.12 4.17
2294 3082 1.515020 CCTCTCCTGAGCCTCGTTG 59.485 63.158 0.00 0.00 38.93 4.10
2295 3083 1.684049 CCCTCTCCTGAGCCTCGTT 60.684 63.158 0.00 0.00 38.93 3.85
2296 3084 2.043450 CCCTCTCCTGAGCCTCGT 60.043 66.667 0.00 0.00 38.93 4.18
2297 3085 3.535962 GCCCTCTCCTGAGCCTCG 61.536 72.222 0.00 0.00 38.93 4.63
2298 3086 1.688884 AAGCCCTCTCCTGAGCCTC 60.689 63.158 0.00 0.00 38.93 4.70
2299 3087 1.994507 CAAGCCCTCTCCTGAGCCT 60.995 63.158 0.00 0.00 38.93 4.58
2300 3088 2.250741 GACAAGCCCTCTCCTGAGCC 62.251 65.000 0.00 0.00 38.93 4.70
2301 3089 1.220477 GACAAGCCCTCTCCTGAGC 59.780 63.158 0.00 0.00 38.93 4.26
2302 3090 1.904032 GGACAAGCCCTCTCCTGAG 59.096 63.158 0.00 0.00 39.92 3.35
2303 3091 1.984570 CGGACAAGCCCTCTCCTGA 60.985 63.158 0.00 0.00 0.00 3.86
2304 3092 2.581354 CGGACAAGCCCTCTCCTG 59.419 66.667 0.00 0.00 0.00 3.86
2305 3093 2.685380 CCGGACAAGCCCTCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
2306 3094 3.003763 ACCGGACAAGCCCTCTCC 61.004 66.667 9.46 0.00 0.00 3.71
2307 3095 1.617947 ATCACCGGACAAGCCCTCTC 61.618 60.000 9.46 0.00 0.00 3.20
2308 3096 1.201429 AATCACCGGACAAGCCCTCT 61.201 55.000 9.46 0.00 0.00 3.69
2309 3097 1.026718 CAATCACCGGACAAGCCCTC 61.027 60.000 9.46 0.00 0.00 4.30
2310 3098 1.002134 CAATCACCGGACAAGCCCT 60.002 57.895 9.46 0.00 0.00 5.19
2311 3099 2.046285 CCAATCACCGGACAAGCCC 61.046 63.158 9.46 0.00 0.00 5.19
2312 3100 1.002624 TCCAATCACCGGACAAGCC 60.003 57.895 9.46 0.00 0.00 4.35
2313 3101 1.026718 CCTCCAATCACCGGACAAGC 61.027 60.000 9.46 0.00 0.00 4.01
2314 3102 1.026718 GCCTCCAATCACCGGACAAG 61.027 60.000 9.46 0.00 0.00 3.16
2315 3103 1.002624 GCCTCCAATCACCGGACAA 60.003 57.895 9.46 0.00 0.00 3.18
2316 3104 2.220586 TGCCTCCAATCACCGGACA 61.221 57.895 9.46 0.00 0.00 4.02
2317 3105 1.745489 GTGCCTCCAATCACCGGAC 60.745 63.158 9.46 0.00 0.00 4.79
2318 3106 2.668632 GTGCCTCCAATCACCGGA 59.331 61.111 9.46 0.00 0.00 5.14
2319 3107 2.438434 GGTGCCTCCAATCACCGG 60.438 66.667 0.00 0.00 42.67 5.28
2321 3109 3.134127 GCGGTGCCTCCAATCACC 61.134 66.667 1.54 1.54 46.95 4.02
2322 3110 2.045926 AGCGGTGCCTCCAATCAC 60.046 61.111 0.00 0.00 35.57 3.06
2323 3111 2.046023 CAGCGGTGCCTCCAATCA 60.046 61.111 0.00 0.00 35.57 2.57
2324 3112 3.512516 GCAGCGGTGCCTCCAATC 61.513 66.667 28.58 0.00 44.72 2.67
2333 3121 4.368808 CGGTTCGTTGCAGCGGTG 62.369 66.667 22.99 10.98 0.00 4.94
2334 3122 4.595538 TCGGTTCGTTGCAGCGGT 62.596 61.111 22.99 0.00 35.83 5.68
2335 3123 3.777925 CTCGGTTCGTTGCAGCGG 61.778 66.667 22.99 6.85 35.83 5.52
2336 3124 3.000080 GACTCGGTTCGTTGCAGCG 62.000 63.158 17.58 17.58 36.47 5.18
2337 3125 1.891060 CTGACTCGGTTCGTTGCAGC 61.891 60.000 0.00 0.00 0.00 5.25
2338 3126 0.318699 TCTGACTCGGTTCGTTGCAG 60.319 55.000 0.00 0.00 0.00 4.41
2339 3127 0.103390 TTCTGACTCGGTTCGTTGCA 59.897 50.000 0.00 0.00 0.00 4.08
2340 3128 0.507358 GTTCTGACTCGGTTCGTTGC 59.493 55.000 0.00 0.00 0.00 4.17
2341 3129 0.776451 CGTTCTGACTCGGTTCGTTG 59.224 55.000 0.00 0.00 0.00 4.10
2342 3130 0.664761 TCGTTCTGACTCGGTTCGTT 59.335 50.000 2.52 0.00 0.00 3.85
2343 3131 0.664761 TTCGTTCTGACTCGGTTCGT 59.335 50.000 2.52 0.00 0.00 3.85
2344 3132 1.050767 GTTCGTTCTGACTCGGTTCG 58.949 55.000 2.52 0.00 0.00 3.95
2345 3133 1.416373 GGTTCGTTCTGACTCGGTTC 58.584 55.000 2.52 0.00 0.00 3.62
2346 3134 0.318445 CGGTTCGTTCTGACTCGGTT 60.318 55.000 2.52 0.00 0.00 4.44
2347 3135 1.168407 TCGGTTCGTTCTGACTCGGT 61.168 55.000 2.52 0.00 0.00 4.69
2348 3136 0.454620 CTCGGTTCGTTCTGACTCGG 60.455 60.000 2.52 0.00 0.00 4.63
2349 3137 0.516001 TCTCGGTTCGTTCTGACTCG 59.484 55.000 0.00 0.00 0.00 4.18
2350 3138 2.788030 GATCTCGGTTCGTTCTGACTC 58.212 52.381 0.00 0.00 0.00 3.36
2351 3139 1.130749 CGATCTCGGTTCGTTCTGACT 59.869 52.381 0.00 0.00 35.37 3.41
2352 3140 1.536149 CGATCTCGGTTCGTTCTGAC 58.464 55.000 0.00 0.00 35.37 3.51
2353 3141 3.990546 CGATCTCGGTTCGTTCTGA 57.009 52.632 0.00 0.00 35.37 3.27
2386 3174 2.087009 CGTTCTGTCTCGGTTCGCC 61.087 63.158 0.00 0.00 0.00 5.54
2387 3175 0.662374 TTCGTTCTGTCTCGGTTCGC 60.662 55.000 0.00 0.00 0.00 4.70
2388 3176 1.050767 GTTCGTTCTGTCTCGGTTCG 58.949 55.000 0.00 0.00 0.00 3.95
2389 3177 1.416373 GGTTCGTTCTGTCTCGGTTC 58.584 55.000 0.00 0.00 0.00 3.62
2390 3178 0.318445 CGGTTCGTTCTGTCTCGGTT 60.318 55.000 0.00 0.00 0.00 4.44
2391 3179 1.168407 TCGGTTCGTTCTGTCTCGGT 61.168 55.000 0.00 0.00 0.00 4.69
2392 3180 0.454620 CTCGGTTCGTTCTGTCTCGG 60.455 60.000 0.00 0.00 0.00 4.63
2393 3181 0.454620 CCTCGGTTCGTTCTGTCTCG 60.455 60.000 0.00 0.00 0.00 4.04
2394 3182 0.733223 GCCTCGGTTCGTTCTGTCTC 60.733 60.000 0.00 0.00 0.00 3.36
2395 3183 1.289380 GCCTCGGTTCGTTCTGTCT 59.711 57.895 0.00 0.00 0.00 3.41
2396 3184 2.087009 CGCCTCGGTTCGTTCTGTC 61.087 63.158 0.00 0.00 0.00 3.51
2397 3185 2.049433 CGCCTCGGTTCGTTCTGT 60.049 61.111 0.00 0.00 0.00 3.41
2398 3186 2.809601 CCGCCTCGGTTCGTTCTG 60.810 66.667 0.00 0.00 42.73 3.02
2399 3187 4.065281 CCCGCCTCGGTTCGTTCT 62.065 66.667 4.47 0.00 46.80 3.01
2444 3232 3.110178 GTTCGTTCTGCCCCGTCG 61.110 66.667 0.00 0.00 0.00 5.12
2445 3233 2.741211 GGTTCGTTCTGCCCCGTC 60.741 66.667 0.00 0.00 0.00 4.79
2446 3234 3.109592 TTGGTTCGTTCTGCCCCGT 62.110 57.895 0.00 0.00 0.00 5.28
2447 3235 2.281208 TTGGTTCGTTCTGCCCCG 60.281 61.111 0.00 0.00 0.00 5.73
2448 3236 1.971695 CCTTGGTTCGTTCTGCCCC 60.972 63.158 0.00 0.00 0.00 5.80
2449 3237 2.626780 GCCTTGGTTCGTTCTGCCC 61.627 63.158 0.00 0.00 0.00 5.36
2450 3238 2.954611 GCCTTGGTTCGTTCTGCC 59.045 61.111 0.00 0.00 0.00 4.85
2451 3239 2.556287 CGCCTTGGTTCGTTCTGC 59.444 61.111 0.00 0.00 0.00 4.26
2452 3240 2.325082 CCCGCCTTGGTTCGTTCTG 61.325 63.158 0.00 0.00 35.15 3.02
2453 3241 2.032071 CCCGCCTTGGTTCGTTCT 59.968 61.111 0.00 0.00 35.15 3.01
2454 3242 3.053896 CCCCGCCTTGGTTCGTTC 61.054 66.667 0.00 0.00 35.15 3.95
2500 3288 4.508128 TCTCGGTCCAATCGCCGC 62.508 66.667 0.00 0.00 46.79 6.53
2502 3290 2.107141 CCTCTCGGTCCAATCGCC 59.893 66.667 0.00 0.00 0.00 5.54
2503 3291 2.586357 GCCTCTCGGTCCAATCGC 60.586 66.667 0.00 0.00 0.00 4.58
2504 3292 1.227089 CTGCCTCTCGGTCCAATCG 60.227 63.158 0.00 0.00 0.00 3.34
2505 3293 1.144936 CCTGCCTCTCGGTCCAATC 59.855 63.158 0.00 0.00 0.00 2.67
2506 3294 3.036429 GCCTGCCTCTCGGTCCAAT 62.036 63.158 0.00 0.00 0.00 3.16
2507 3295 3.706373 GCCTGCCTCTCGGTCCAA 61.706 66.667 0.00 0.00 0.00 3.53
2531 3319 4.148825 CTCCAGGCTCGTTCCCCG 62.149 72.222 0.00 0.00 38.13 5.73
2532 3320 4.475135 GCTCCAGGCTCGTTCCCC 62.475 72.222 0.00 0.00 38.06 4.81
2533 3321 4.821589 CGCTCCAGGCTCGTTCCC 62.822 72.222 0.00 0.00 39.13 3.97
2534 3322 3.760035 TCGCTCCAGGCTCGTTCC 61.760 66.667 0.00 0.00 39.13 3.62
2535 3323 2.507324 GTCGCTCCAGGCTCGTTC 60.507 66.667 0.00 0.00 39.13 3.95
2536 3324 4.421479 CGTCGCTCCAGGCTCGTT 62.421 66.667 0.00 0.00 39.13 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.