>input_sequence_74965
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-------------------------------------------------------------ATGGCAATCACTGATGATC
CGAAGAAAGAGGCATCAA---CTTGGTCCATTTTTAATTGGAATAACAAAGCAGGTAAGGTTGAGGGGGTTTCCTGCATC
CAGTTCCAAGGGTAGAAACA-------ACCACCCCCTTTTTTTCTGACAAGA----------------------------
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-ATGCTAACTACTATCTGCTACCAGAGCCGGAGGTCGAGCAACCGAGAATGAGAAGCACCCAAGAGATCCTCACAAAATA
TAAATTCAACGGGGTATTATATTTCTCCACCTTTGAATTTTACATCTACCCCTATATTGCTTGTCTCTTGCTGATTTAGC
TAGTAGCTGTAAATTGCGCTCCAGGATGCTGCCGCGGCAGCGGCGCACGCAAAGGATAAGCTCATGGAGCGGCAGGAGAA
ACTCGCGGTAAAACGATTTGGTTCCTTCTGTTGTTCAATCGACACCAAGTGAGTACGGTAAATCTTGACGACACTGATAT
CCTGTTTCTTGGATGCCAGAAAATGGTCGAAGAATCCGCAGAGTTTGAGAGCGAGGCGGAAAACTTTGCCACCCTCGGTC
AGCAGATCAGGAAATCCCTGGAGACCAAGAGATGGTGGTGGCCATCGTGA------------------------------
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>chr4B_1_TraesCS4B01G194800
CGCACAACACCTCATCTCGTCCATCATCTTTGCTGGCTTGACAGCCGGAGTGATAGCCTTGGTGAAAGCGAATGGGAAGC
AGCTCTGCTCTAGACCCCGATTATGCGGTCTGATCTAGTTGGCGGTCCCTTTTCTCTTGTCCAGTTCTCAGAGCTTTGTT
GCTGGAATCTGAATGGGTATGAAGTGTTGATAGCAAGCTACGTGTCCGCTGTCAGCGTAGATAGATTAAGCAAGGGAAAG
GTTGGCTTGCTGGTCCGGTTAATCTGAAGTAAATTTTGT-AACACCTGGTTAGATTGTCTGGTTTCCTGGTAAATA--GT
GGATTGTGCAGTCAGAGACACGCCATCTTGTAG----TAATGAAAATTAAGGTTAAATTGTAACATTGAATTCTACC---
--GCACAGTTTCTGTATCTTAAACTTGTGAAATTGTCTACACAGAATTTAAAATTACTGAATTCGACAGGCATACTCCAG
AGTGAGAGGTTGGCTCTTGTATAATGCCAGCTTAACCAAGGACA------------------------------------
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--------------------------------------GACAGGCGTAAGCTGCCCAAAAATAAGCGCTCCCGAGATAGT
GGTGGCAGGCCACGGTTCAAGGCTATCAACAAAACA--GGTAGCCAGCAAAAAAAAGACCGTCCCTGTTTTGCTCTCTTT
CATCCCTCTCTTTGCCGGCTGCCATCCACATTGGGATCTCGAATTCACCTTGGATTTTGTAGCGTAGGGCAA-GGCCGCG
CCTTTTCTCAGGCTGCCCTGCTGCGTCAAGTGTCTTCTGTCGCAGGTGAATCGG-TCTAAATGTCTCCGTATTTTTTGCT
GGATTTCGGCTACCTGCAGATAAGGCGGCATGGCATCTTGGGATTTAGCTGATCTCCTCTCTGTTGTCTGCTCTGCTGGC
TGGCTTAACATGAAGTTTTCAACACAGGAGGGATCTAATAGCTGGGA-TTCTTGGTGGCACCGATCACGA----AAGGAT
TCAAAGCAATATAC------TGAAATAAAGTTTCAGCACACGGAACCTAAGCGTGCAGCTGATGGCAATCACTGATGATC
CGAAGAAAGAGGCATCAA---CTTGGTCCATTTTTAATTGGAATAACAAAGCAGGTAAGGTTGAGGGGGTTTCCTGCATC
CAGTTCCAAGGGTAGAAACA-------ACCACCCCCTTTTTTTCTGACAAGA----------------------------
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-ATGCTAACTACTATCTGCTACCAGAGCCGGAGGTCGAGCAACCGAGAATGAGAAGCACCCAAGAGATCCTCACAAAATA
TAAATTCAACGGGGTATTATATTTCTCCACCTTTGAATTTTACATCTACCCCTATATTGCTTGTCTCTTGCTGATTTAGC
TAGTAGCTGTAAATTGCGCTCCAGGATGCTGCCGCGGCAGCGGCGCACGCAAAGGATAAGCTCATGGAGCGGCAGGAGAA
ACTCGCGGTAAAACGATTTGGTTCCTTCTGTTGTTCAATCGACACCAAGTGAGTACGGTAAATCTTGACGACACTGATAT
CCTGTTTCTTGGATGCCAGAAAATGGTCGAAGAATCCGCAGAGTTTGAGAGCGAGGCGGAAAACTTTGCCACCCTCGGTC
AGCAGATCAGGAAATCCCTGGAGACCAAGAGATGGTGGTGGCCATCGTGACTCACAAACCAATCGTCCGGTCATCGAGCG
ATGTGATGTA--GTAGCTTAAAAAACACT-CTTATATTATGAAACGGAGGGAATAATGCCAATGCGTTTAGCATGCCTGG
CTGCTGTACTGCTCTGCGCATGCTAAATGAAACGAAACCAAGACGCTACCTTTTAGCAACAAGTGGGAATGATTGTGGAC
GGATACATGTATCTACTC----TACTTAGTTTTAATAATTTC-GTGATGGGGATGGCTGACGACCGTGCGATTAACTTCT
CACCCGCCAGCGCCATACATCACATGTAC---------------------------------------------------
---------------------------TAACTCTTATCTTGGACGGATAAATGGTACGAGGAGGCATATTTTGCTTGCGG
ACTGAATGGTGCTAAGAGGGGACACGGGTGGCGTATACCAGCCATCGGTTGGAGGCTTCTCCGATTGGACTGTCCATCGA
TGAGGTTAGGCTGCTA-CTAGTTCCCTTTTCCACTTGCCACGTCGGACGGAGGGAGTATGACCCTATAAACAGAGACAGG
AGCCTGTAGTGTAGCATCAATTAACTATCCTGTGGTTGTACGTAGCATAGATTAGACCCTGTTTGTTTCATAAGTCCTAA
GACTTTTTTAAGTTCCAACTTATAAGTCATAAGTCCCTACCTGTTTGTTTATAGGGACTTATAAGTTTCGAATCCCTACC
TGTTTGTTTACAGGGACTTATAAGTCCATGTTGCACCGCTGCAACGAGGCTCAGGAGAGGGCTTGTCCGGTGATTGGAGG
CACCGCTGCAACGAACCGAGTCAGAACGAACCGAGATCGGGCGGCGACGGGGCGGCGAACCGAGACAGAACGAACCGAGG
CGGGGCGGCGACGGGGCGAGAGGCGGGGCGGCGACGGGGCAGAACGAACCAAGGCGGGGCGGCGACGGGGCGAGTGGCGG
GGCGGCGGCGGCGATTGGACCGAGAGGCAGGCGGCGTGCGGGGAACGAGCCTGGAGCGACGCGGGGTAGGTCCGGCCCGG
AATAAGTCCCAATAAAC
>chr4A_1
CGCACAACACCTCATCTCATCCATCATCTTCGCTGGCTTGACAGCCGGAGTGGTAGCCTTGGTGAAAGCGAATGGGAAGC
AGCTCTGCTCTAGACCCCGATTATGCGGTCTGATCTAGTTGGCGGCCCCTTTTCTCTTGTCCGGTTCTCAGAGCTTTGTT
GTTGGAATCTGAATGGATATGAAGTGTTGACAGCAAGCTACCTGTCCACTGTCAGCGTAGATAGATTAACCAAGGGAGAG
GTCAGCTTGCTGGTCCGGTAAATCTGAAGTAAATTTTGTAAACACCTGGTTAGATTGTCTGGTTTCCTGGTAAATATAGT
GGATTGTGCAGTCGGAGGCACACCGTCTTGTAG----TACTGTAAACTAAGGTTAAATTGTAACACTGGATTGGATTCTG
CTGCACAGTTTCTGTATCTTAAACTTGTGAAATTGTTTGCACAGAATTTAAAATTACTGAATTCGACAGGCATACTCCAG
AGTGAGAAGTTGGCTCTTGTATAATGCCAGCTTAACCCAGGACAGACAGCGGTAAGTTGTCCGGCTCGTTGGTGGCAACT
GCATGCGTGGGTCCTGAACACCTCCGCCTGGGTCGTGGTCTTTCAGAAGGCCCCGTGCACATGTTGTTTCCTTGGATCAA
GATCGATTCTCTTGAGGCCGTTTTGCCTGCACATGTTTTTCTTTTTTCTTTTCCAATTAGCACATGTGTTCTATCTATTC
CTATGTTGTCAAGGCAATTTCTTCTGTGGCTTCCGTGGGTAGTTTCAGCTAGATCGTCCCGAACTCCCAGATGCCTATAG
CCAGAACATATATGGTTCGAAAAAGGAAGAAAAAAAATGACAGGCGTATGCTGCCCAAAAATAAGCGCTCCCAAGATATT
GGTGGCACGCCACAGTTCAAGGTGGCCAACCAAACGTTGGTGGCCAGAAAGAAAAAGACCGTCTCTGT-TTTG-------
-----CTCTCTTTGCTGGCTGCTATCCACGTTGGGGTCTCGAATTCACCTTGGATTTCGTAGCGTAGAACAAAGGCTCCG
TCCGTC-----------------CGTCAAGCATCCTCTGTCGCAGGTGAATTGGCTCTAAATGTCTCCGCCTGTTCCGCT
GGATTCCGGCTAC---CAGATAAGGCGGCGTGGCATGTTGAAATTTATTTGATCTCCTCTCTGTTGTCTGTTGTA----C
TGGCTTAACATGAAGTTTCCAACGCAGGAT-GATCTAATAGCTGTTAGTTCTTGGTAGCATCGATCACATCAAGAAGGAT
TCAAAGGAAAAAAGTGCAATTGAAATAAAGTTTCACCACACGAAACCTAAGCGAGAAGCCGATGGCAAGCACTGATGATC
CGAAGAACGAGCCGTCGTCCCCTTGGTCCATTTTTAATTGGAATAACAAAGCAGGTAAGGTTAAGGGGGTCTCCTGCATC
CAATTCCAAGGATACGAACACACAAATACCCCCCCTTTTTTTTCTGACAACA----------------------------
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-ATGTGAACTACTATCTGCTACCAGAGCCGGAGGTCGAGCAACCCAGAATGAGAAGCACCCAAGAGATCCTCACAAAATA
TAAATTCAACGGGGTATTATATTTCTCCACCTTTGAATTTTGCATTTACTCCTATATTGCTTGTCTCTTGCTGATTTAGC
TAGTAGCTGTAAATTGCGCTCCAGGATGCTGCCGCGGCAGCGGCGCACGCGAAGGATAAGCTCATGGAGCGGCAGGAGAA
ACTCGCGGTAAAACGATTTGGTTCCTTCTATTGTTCAATCGACGCCAAGAGAGTACGGTAAATCTTGACGACACTGACAT
CCTGTTTCTTGGATGCCAGAAAATGGTCGAAGAATCTGCAGAGTTTGAGAGCGAGGCGGAAAACTTTGCCACCCTCGGCC
AGCAGGTCAGGAAATCCCTGGAGACCAAGAGATGGTGGTGGCCATCGTGATTCATAAACCAATCGTCCGGTCATCAAGCG
ATGTGATGTGATGTAGTGTAAAAAACGCTTCTTATATTATGGGACGGAGGGAGTAATACCAATGTGTTTAGCGTGCCTGG
CTGCTGCACTGGTCTGCGCATGCTAAATGAAACGAGAGCAAGACGTTGCCTTTTAGCAACAAGTGGGAATGATTGTGGAC
GGATACATGTATCTACTC----TACTTAGTTTTAATTAATCATGTGATGGTGATGGCTGACGACCGTGCGATGAACTTCT
CACCCGCCAGCACCATACATGTA----AC---------------------------------------------------
---------------------------TAGCTCTTATCGTGGACGGATAAATGGTACGAGGTGGCATATTTTGCTTGCGG
ATCGAATGGTGCTAAGAGAGGACACGGGTGGCGTGTACCAGCCATGGGTTGGAGGCTTCTCCGATTGGACCGTCCATTGA
TGAGGTTAGGCTGCTTGCTGGTTCCCTTTTCCACTTGCCACGTC------------------------------------
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>chr4D_1
CGCACAACACCTCATCTCGTTCATCATCTTCGCTGGCTTGACAGCCGGAGTGGTAGCCTTGGTGAAAGCGAATGGGAAGC
AGCTCTGCTCTAGACCCCGCTTATGTGGTCTGATCTAGTTTGCGGCCCCTTCTCTCTTGTCCAGTTCTCAGAGCTTTGTT
GTTGGAATCTGAAGGGATATGAAGTGTTGATAGCAAGCTACGTGTCCGCTGTCAGCGTAGATAGATTAAACAAGGGAAAG
GTTGGCTTGCTGGTCCGGTAAATCTGAAGTAAATTTTGTAA-CACCTGGTTAGATTGTCTGGTTTCCTGGTAAATA--GT
GGATTGTGCAGTCAGAGACACACCGTCTTGTAGTACTTACTGTAAACTAAGGTTAAACTGTAACACTGGATTCTACC---
--GCACAGTTTCTGTATCTTAAACTTGTGAAATTGCTTGCACGGAATTTGAAATTACTGAATTTGACAGGCATACTCCAG
AGTGAGAGGTTGGCTCTTGTATAATGCCAGCTTAACCCAGGACAGACAGCGGTAAGTTGTCCGGCTCGTTGGTGGCAACT
GCATACCTGGGTCCTGAACACCTCCGCCTGGGGCGTGGTCTTTCAGAAGGCCCCGTGCATATGCTGTATCCTTGGAGCAA
GATCGATTCTCTTGAGGCCGTTTTGCCTGCACATGTTTTTCTCTTTTCTTTTCCAATTAGCACATGCGTTCTATCTATGT
T-----------------------TGTGGCTTCCGTGGGTAGTTTCAGCTAGATCGTTCTGAACTCCCAGATGCCCATAG
CCAGAACATATATAGTTCGAAAAAGGAAGAAAAAAAATGACAGGCGTATGCTGCCCAAAAATAAGCGCTCCCAAGATATT
GGTGGCACGCCACAGTTCAAGGTGGCCAACCAAACGTTGGTGGCCAGAAAGAAAAAGACCGCCTCTGTGTTTG-------
-----CTCTCTTTGCTGGCTGCTATCCACATTGGGATCTCGAATTCACCTTGGATTTCGTAGCGTAGAACAA-GGCTCCG
TTCGTC-----------------CGTCAAGCATCCTCTGTCGCAGGTGAATTGGCTCTAAATGTCTCCGTCTGTTCTGCT
GGATTCCGGCTAC---CAGATAAGGCGGCAAGGAATGTTGAGATTCCTTTGATCTCCTCTCAATTGTCTGTTCTG----C
TGGCTAAACATGAAGTTTCCAACGCAGGAT-GATCTAATAGCTGTGAGTTCTTGGTGGCATCGATCACACTGAGAAGGAT
TCAAAGGGAAAAAC-GCAATTGAAATAAAGTTTCACCACACGAAACCTAAGCGAGAAGCCGATGGCAAGCACCGATGATC
CGAAGAACGAGCCGTCGTCCTCTTGGTCCATTTTTAATTGGAACAATAAAGTGGGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATGTGAACTACTATCTGCTACCAGAGCCGGAGGTCGAGCAACCGAGAATGAGAAGCACCCAAGAGATCCTCACAAAATA
TAAATTCAACGGGGTATTATATTTCTTCACCTTTGAATTTTGCATGTACCCCTATATTGCTTGTCTCTTGCTGATTTAGC
TAGTAGCTGTAAATTGCGCTCCAGGATGCTGCCGCGGCAGCGGCGCACGCAAAGGATAAGCTCATGGAGCGGCAGGAGAA
ACTCGCGGTAAAACGATTTGGTTCCTTCTGTTGTTCAATCGACGCCAAGAGAGTAAGGTAAAT----------CTGATAT
CCTGTTTCTTGGATGCCAGAAAATGGTTGAAGAATCCGCAGAGTTTGAGAGCGAGGCGGAAAACTTTGCCACCCTCGGTC
AGCAGATCAGGAAATCCCTGGAGACCAAGAGATGGTGGTGGCCATCGTGATTCATAA-CCAATCATCTGGTCTTCGAGCG
------TGTGATGTAGTGTCAAAAACGCCTTATATATTATGAAACGGAGGGAGTAATACCAATGCGTTTAGCATGCCTGG
CTGCTGCACTGGTCTGCGCGTGCTAAATGAAACGAGAGCAAGACGTTGCCTTTTAGCAACAAGTGGGAATGATTGTGGAC
GGATACATGTATCTACTCCTACTACTTAGTTTTAATTC---C-GTGATCGCGATGGCTGACGACCGTGCGATTAACTTCT
CACCCGCCAGCGCCATACATGTACTATTCCTTTTAGTCTCATAATATAAGACGTTTTGTATTATTAGTATAGTGTTAAAA
AAGTCTTACATTATTGGACGCAGGAAGTAGCTCTTATCGTGGACGGATAAATGGTACGAGGAGGCATATTTTGCTTGCGG
GCTGAATGGTGCTAAGAGAAGACACGGGTGGCGTGTGCCAGCCATCGGTTGGAGGCTTCTCCGGTTGGACCGTCTATTGA
TGAGGTTAGGCTGCTTGCTAGTTCCCTTTTCCACTTGCTATGTCG-----------------------------------
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>SNPs
------------------------------S---------------------S---------------------------
---------------------------------------------S----------------------------------
-S--------------S----------------------------------------------------S----------
-------------------S------------------------------------------------------------
---------------------S--S--------------S--S---S------------------S--S-----------
------------------------------------S-S-----------------------------------------
-------------------------------------S------------------------------------------
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------------------------------------------------S-----------------------S-----S-
-------S-----S--------SSSS----S----S-----S-----S--S------------S----S--SSSSSSSSS
SSSSS----------S------S----------------------------------S---------SS-------SS--
S-SS-SSSSSSSSSSSSSSSSSS-------SS--S----------------S------------------S-S--S----
-----S-------SSS--------------------S---S------SS---------------------S----SSSS-
------------------S----S-----SS-------------S---------------S-------SS----------
------S--S-S-----------------------S------S----------S-S---S--------S-----------
-------S---S-S--SS--------------------------------------------S-------S---------
--S--------S--SS--------------S----S--------------S-----------------------------
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----SS--------------------------------------------------------------------------
-----------------------------------------S---S----------------------------------
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-------------------------------------------S-----S------------------------------
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--------------------------------------------------S---S-------------------------
---------S------SS--------S-------------------------S----S----------------------
------S----S-----------------------S-S-------S-S--------------------------------
------------------------------------S-S-S---------S-----------------------------
--------------------SSSS-S------------------------------------------------------
-----------------------------S--------S-----------------------------------------
------------------S---------------S-----------------------------------S------S--
---------------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_1199
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-----------------------------------------------------------TCTGTTGTCTGCTCTGCTGG-
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>reverse_3061
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--------------------TAAGTCCATGTTGCACCGCT----------------------------------------
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