Multiple sequence alignment - TraesCS4B01G188800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G188800 chr4B 100.000 3011 0 0 1 3011 411490768 411487758 0.000000e+00 5561.0
1 TraesCS4B01G188800 chr4B 98.540 274 4 0 34 307 467910182 467910455 4.510000e-133 484.0
2 TraesCS4B01G188800 chr4D 91.710 2316 84 35 535 2809 333012332 333010084 0.000000e+00 3114.0
3 TraesCS4B01G188800 chr4D 87.958 191 14 6 307 496 333012503 333012321 1.820000e-52 217.0
4 TraesCS4B01G188800 chr4D 97.143 35 1 0 1 35 333012534 333012500 3.240000e-05 60.2
5 TraesCS4B01G188800 chr4A 89.509 2383 114 61 307 2635 140306353 140308653 0.000000e+00 2891.0
6 TraesCS4B01G188800 chr4A 87.676 284 17 8 2631 2896 140309014 140309297 6.270000e-82 315.0
7 TraesCS4B01G188800 chr6A 98.195 277 5 0 34 310 593832355 593832079 4.510000e-133 484.0
8 TraesCS4B01G188800 chr2A 98.168 273 5 0 34 306 62093597 62093325 7.550000e-131 477.0
9 TraesCS4B01G188800 chr7B 97.810 274 6 0 34 307 643117822 643118095 9.770000e-130 473.0
10 TraesCS4B01G188800 chr7A 97.810 274 6 0 34 307 112456489 112456216 9.770000e-130 473.0
11 TraesCS4B01G188800 chr5A 97.810 274 6 0 34 307 632587694 632587421 9.770000e-130 473.0
12 TraesCS4B01G188800 chr6B 97.445 274 7 0 34 307 664459620 664459347 4.550000e-128 468.0
13 TraesCS4B01G188800 chr6B 96.715 274 9 0 34 307 664713402 664713675 9.840000e-125 457.0
14 TraesCS4B01G188800 chr6B 96.350 274 10 0 34 307 673363802 673364075 4.580000e-123 451.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G188800 chr4B 411487758 411490768 3010 True 5561.0 5561 100.000000 1 3011 1 chr4B.!!$R1 3010
1 TraesCS4B01G188800 chr4D 333010084 333012534 2450 True 1130.4 3114 92.270333 1 2809 3 chr4D.!!$R1 2808
2 TraesCS4B01G188800 chr4A 140306353 140309297 2944 False 1603.0 2891 88.592500 307 2896 2 chr4A.!!$F1 2589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 408 0.179029 ACCCATAATTTCTCCGGCGG 60.179 55.0 22.51 22.51 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 2224 0.170116 GACACAGAGACGAGCCAGAG 59.83 60.0 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.202326 ACACTGTTGAAATCCGTCCTAGTT 60.202 41.667 0.00 0.00 0.00 2.24
31 32 4.710324 TGTTGAAATCCGTCCTAGTTGTT 58.290 39.130 0.00 0.00 0.00 2.83
32 33 4.513692 TGTTGAAATCCGTCCTAGTTGTTG 59.486 41.667 0.00 0.00 0.00 3.33
33 34 4.610605 TGAAATCCGTCCTAGTTGTTGA 57.389 40.909 0.00 0.00 0.00 3.18
34 35 4.566004 TGAAATCCGTCCTAGTTGTTGAG 58.434 43.478 0.00 0.00 0.00 3.02
35 36 3.611766 AATCCGTCCTAGTTGTTGAGG 57.388 47.619 0.00 0.00 0.00 3.86
36 37 1.263356 TCCGTCCTAGTTGTTGAGGG 58.737 55.000 0.00 0.00 35.81 4.30
37 38 0.391263 CCGTCCTAGTTGTTGAGGGC 60.391 60.000 0.00 0.00 33.86 5.19
38 39 0.320374 CGTCCTAGTTGTTGAGGGCA 59.680 55.000 0.00 0.00 37.29 5.36
39 40 1.066143 CGTCCTAGTTGTTGAGGGCAT 60.066 52.381 0.00 0.00 37.29 4.40
40 41 2.359900 GTCCTAGTTGTTGAGGGCATG 58.640 52.381 0.00 0.00 37.41 4.06
41 42 1.985159 TCCTAGTTGTTGAGGGCATGT 59.015 47.619 0.00 0.00 33.27 3.21
42 43 3.055385 GTCCTAGTTGTTGAGGGCATGTA 60.055 47.826 0.00 0.00 37.41 2.29
43 44 3.055385 TCCTAGTTGTTGAGGGCATGTAC 60.055 47.826 0.00 0.00 33.27 2.90
44 45 2.949177 AGTTGTTGAGGGCATGTACA 57.051 45.000 0.00 0.00 0.00 2.90
45 46 3.222173 AGTTGTTGAGGGCATGTACAA 57.778 42.857 0.00 0.00 0.00 2.41
46 47 3.766545 AGTTGTTGAGGGCATGTACAAT 58.233 40.909 0.00 0.00 32.10 2.71
47 48 3.507233 AGTTGTTGAGGGCATGTACAATG 59.493 43.478 0.00 0.12 32.10 2.82
48 49 2.445427 TGTTGAGGGCATGTACAATGG 58.555 47.619 0.00 0.00 0.00 3.16
49 50 2.224992 TGTTGAGGGCATGTACAATGGT 60.225 45.455 0.00 0.00 0.00 3.55
50 51 2.825532 GTTGAGGGCATGTACAATGGTT 59.174 45.455 0.00 0.00 0.00 3.67
51 52 2.445427 TGAGGGCATGTACAATGGTTG 58.555 47.619 0.00 0.00 0.00 3.77
52 53 2.040947 TGAGGGCATGTACAATGGTTGA 59.959 45.455 0.00 0.00 0.00 3.18
53 54 3.290710 GAGGGCATGTACAATGGTTGAT 58.709 45.455 0.00 0.00 0.00 2.57
54 55 4.080072 TGAGGGCATGTACAATGGTTGATA 60.080 41.667 0.00 0.00 0.00 2.15
55 56 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
56 57 5.268387 AGGGCATGTACAATGGTTGATAAA 58.732 37.500 0.00 0.00 0.00 1.40
57 58 5.898972 AGGGCATGTACAATGGTTGATAAAT 59.101 36.000 0.00 0.00 0.00 1.40
58 59 6.040842 AGGGCATGTACAATGGTTGATAAATC 59.959 38.462 0.00 0.00 0.00 2.17
59 60 5.914635 GGCATGTACAATGGTTGATAAATCG 59.085 40.000 0.00 0.00 0.00 3.34
60 61 5.914635 GCATGTACAATGGTTGATAAATCGG 59.085 40.000 0.00 0.00 0.00 4.18
61 62 6.459573 GCATGTACAATGGTTGATAAATCGGT 60.460 38.462 0.00 0.00 0.00 4.69
62 63 6.671614 TGTACAATGGTTGATAAATCGGTC 57.328 37.500 0.00 0.00 0.00 4.79
63 64 6.411376 TGTACAATGGTTGATAAATCGGTCT 58.589 36.000 0.00 0.00 0.00 3.85
64 65 6.882140 TGTACAATGGTTGATAAATCGGTCTT 59.118 34.615 0.00 0.00 0.00 3.01
65 66 8.041919 TGTACAATGGTTGATAAATCGGTCTTA 58.958 33.333 0.00 0.00 0.00 2.10
66 67 9.052759 GTACAATGGTTGATAAATCGGTCTTAT 57.947 33.333 0.00 0.00 0.00 1.73
67 68 8.154649 ACAATGGTTGATAAATCGGTCTTATC 57.845 34.615 0.00 4.58 36.64 1.75
68 69 7.993183 ACAATGGTTGATAAATCGGTCTTATCT 59.007 33.333 10.12 0.00 36.91 1.98
69 70 8.840321 CAATGGTTGATAAATCGGTCTTATCTT 58.160 33.333 10.12 0.00 36.91 2.40
72 73 9.893634 TGGTTGATAAATCGGTCTTATCTTAAA 57.106 29.630 10.12 0.00 36.91 1.52
79 80 8.506168 AAATCGGTCTTATCTTAAATCTTGCA 57.494 30.769 0.00 0.00 0.00 4.08
80 81 8.682936 AATCGGTCTTATCTTAAATCTTGCAT 57.317 30.769 0.00 0.00 0.00 3.96
81 82 7.482654 TCGGTCTTATCTTAAATCTTGCATG 57.517 36.000 0.00 0.00 0.00 4.06
82 83 7.047891 TCGGTCTTATCTTAAATCTTGCATGT 58.952 34.615 0.00 0.00 0.00 3.21
83 84 8.201464 TCGGTCTTATCTTAAATCTTGCATGTA 58.799 33.333 0.00 0.00 0.00 2.29
84 85 8.826710 CGGTCTTATCTTAAATCTTGCATGTAA 58.173 33.333 0.00 0.00 0.00 2.41
124 125 8.585471 AAAAACATGTCTACAATGGATCATCT 57.415 30.769 0.00 0.00 0.00 2.90
125 126 7.798596 AAACATGTCTACAATGGATCATCTC 57.201 36.000 0.00 0.00 0.00 2.75
126 127 6.744175 ACATGTCTACAATGGATCATCTCT 57.256 37.500 0.00 0.00 0.00 3.10
127 128 7.134362 ACATGTCTACAATGGATCATCTCTT 57.866 36.000 0.00 0.00 0.00 2.85
128 129 8.255111 ACATGTCTACAATGGATCATCTCTTA 57.745 34.615 0.00 0.00 0.00 2.10
129 130 8.366401 ACATGTCTACAATGGATCATCTCTTAG 58.634 37.037 0.00 0.00 0.00 2.18
130 131 6.753180 TGTCTACAATGGATCATCTCTTAGC 58.247 40.000 0.00 0.00 0.00 3.09
131 132 6.162777 GTCTACAATGGATCATCTCTTAGCC 58.837 44.000 0.00 0.00 0.00 3.93
132 133 6.014669 GTCTACAATGGATCATCTCTTAGCCT 60.015 42.308 0.00 0.00 0.00 4.58
133 134 5.643421 ACAATGGATCATCTCTTAGCCTT 57.357 39.130 0.00 0.00 0.00 4.35
134 135 6.753913 ACAATGGATCATCTCTTAGCCTTA 57.246 37.500 0.00 0.00 0.00 2.69
135 136 7.327064 ACAATGGATCATCTCTTAGCCTTAT 57.673 36.000 0.00 0.00 0.00 1.73
136 137 7.393216 ACAATGGATCATCTCTTAGCCTTATC 58.607 38.462 0.00 0.00 0.00 1.75
137 138 7.237263 ACAATGGATCATCTCTTAGCCTTATCT 59.763 37.037 0.00 0.00 0.00 1.98
138 139 7.811482 ATGGATCATCTCTTAGCCTTATCTT 57.189 36.000 0.00 0.00 0.00 2.40
139 140 7.238486 TGGATCATCTCTTAGCCTTATCTTC 57.762 40.000 0.00 0.00 0.00 2.87
140 141 6.784473 TGGATCATCTCTTAGCCTTATCTTCA 59.216 38.462 0.00 0.00 0.00 3.02
141 142 7.290948 TGGATCATCTCTTAGCCTTATCTTCAA 59.709 37.037 0.00 0.00 0.00 2.69
142 143 8.320617 GGATCATCTCTTAGCCTTATCTTCAAT 58.679 37.037 0.00 0.00 0.00 2.57
145 146 9.988815 TCATCTCTTAGCCTTATCTTCAATAAC 57.011 33.333 0.00 0.00 0.00 1.89
146 147 9.995003 CATCTCTTAGCCTTATCTTCAATAACT 57.005 33.333 0.00 0.00 0.00 2.24
185 186 8.613060 AATATGGTGAGACATATTGTGCTAAG 57.387 34.615 9.82 0.00 46.68 2.18
186 187 5.675684 TGGTGAGACATATTGTGCTAAGA 57.324 39.130 0.00 0.00 0.00 2.10
187 188 5.664457 TGGTGAGACATATTGTGCTAAGAG 58.336 41.667 0.00 0.00 0.00 2.85
188 189 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
189 190 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
190 191 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
191 192 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
192 193 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
193 194 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
194 195 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
195 196 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
206 207 4.942761 GAGATCATCTCTTGCCTTCTCT 57.057 45.455 7.48 0.00 40.30 3.10
207 208 5.280654 GAGATCATCTCTTGCCTTCTCTT 57.719 43.478 7.48 0.00 40.30 2.85
208 209 6.403866 GAGATCATCTCTTGCCTTCTCTTA 57.596 41.667 7.48 0.00 40.30 2.10
209 210 6.805016 AGATCATCTCTTGCCTTCTCTTAA 57.195 37.500 0.00 0.00 0.00 1.85
210 211 7.377696 AGATCATCTCTTGCCTTCTCTTAAT 57.622 36.000 0.00 0.00 0.00 1.40
211 212 7.804147 AGATCATCTCTTGCCTTCTCTTAATT 58.196 34.615 0.00 0.00 0.00 1.40
212 213 8.932610 AGATCATCTCTTGCCTTCTCTTAATTA 58.067 33.333 0.00 0.00 0.00 1.40
213 214 9.553064 GATCATCTCTTGCCTTCTCTTAATTAA 57.447 33.333 0.00 0.00 0.00 1.40
214 215 8.954950 TCATCTCTTGCCTTCTCTTAATTAAG 57.045 34.615 17.60 17.60 34.65 1.85
215 216 8.762645 TCATCTCTTGCCTTCTCTTAATTAAGA 58.237 33.333 23.26 23.26 39.82 2.10
229 230 8.779354 TCTTAATTAAGAGAAGACAAGCCTTC 57.221 34.615 21.46 0.00 37.40 3.46
240 241 7.622893 GAAGACAAGCCTTCTCTTATGATTT 57.377 36.000 0.00 0.00 39.44 2.17
241 242 7.622893 AAGACAAGCCTTCTCTTATGATTTC 57.377 36.000 0.00 0.00 0.00 2.17
242 243 6.956497 AGACAAGCCTTCTCTTATGATTTCT 58.044 36.000 0.00 0.00 0.00 2.52
243 244 7.047271 AGACAAGCCTTCTCTTATGATTTCTC 58.953 38.462 0.00 0.00 0.00 2.87
244 245 6.956497 ACAAGCCTTCTCTTATGATTTCTCT 58.044 36.000 0.00 0.00 0.00 3.10
245 246 7.047271 ACAAGCCTTCTCTTATGATTTCTCTC 58.953 38.462 0.00 0.00 0.00 3.20
246 247 7.092935 ACAAGCCTTCTCTTATGATTTCTCTCT 60.093 37.037 0.00 0.00 0.00 3.10
247 248 7.054491 AGCCTTCTCTTATGATTTCTCTCTC 57.946 40.000 0.00 0.00 0.00 3.20
248 249 6.041979 AGCCTTCTCTTATGATTTCTCTCTCC 59.958 42.308 0.00 0.00 0.00 3.71
249 250 6.041979 GCCTTCTCTTATGATTTCTCTCTCCT 59.958 42.308 0.00 0.00 0.00 3.69
250 251 7.661040 CCTTCTCTTATGATTTCTCTCTCCTC 58.339 42.308 0.00 0.00 0.00 3.71
251 252 7.506938 CCTTCTCTTATGATTTCTCTCTCCTCT 59.493 40.741 0.00 0.00 0.00 3.69
252 253 9.573166 CTTCTCTTATGATTTCTCTCTCCTCTA 57.427 37.037 0.00 0.00 0.00 2.43
253 254 8.918202 TCTCTTATGATTTCTCTCTCCTCTAC 57.082 38.462 0.00 0.00 0.00 2.59
254 255 7.942341 TCTCTTATGATTTCTCTCTCCTCTACC 59.058 40.741 0.00 0.00 0.00 3.18
255 256 7.821566 TCTTATGATTTCTCTCTCCTCTACCT 58.178 38.462 0.00 0.00 0.00 3.08
256 257 7.942341 TCTTATGATTTCTCTCTCCTCTACCTC 59.058 40.741 0.00 0.00 0.00 3.85
257 258 5.458451 TGATTTCTCTCTCCTCTACCTCA 57.542 43.478 0.00 0.00 0.00 3.86
258 259 6.024563 TGATTTCTCTCTCCTCTACCTCAT 57.975 41.667 0.00 0.00 0.00 2.90
259 260 6.068010 TGATTTCTCTCTCCTCTACCTCATC 58.932 44.000 0.00 0.00 0.00 2.92
260 261 5.458451 TTTCTCTCTCCTCTACCTCATCA 57.542 43.478 0.00 0.00 0.00 3.07
261 262 5.661503 TTCTCTCTCCTCTACCTCATCAT 57.338 43.478 0.00 0.00 0.00 2.45
262 263 5.661503 TCTCTCTCCTCTACCTCATCATT 57.338 43.478 0.00 0.00 0.00 2.57
263 264 6.024563 TCTCTCTCCTCTACCTCATCATTT 57.975 41.667 0.00 0.00 0.00 2.32
264 265 7.155442 TCTCTCTCCTCTACCTCATCATTTA 57.845 40.000 0.00 0.00 0.00 1.40
265 266 7.764617 TCTCTCTCCTCTACCTCATCATTTAT 58.235 38.462 0.00 0.00 0.00 1.40
266 267 7.888021 TCTCTCTCCTCTACCTCATCATTTATC 59.112 40.741 0.00 0.00 0.00 1.75
267 268 6.951198 TCTCTCCTCTACCTCATCATTTATCC 59.049 42.308 0.00 0.00 0.00 2.59
268 269 6.868826 TCTCCTCTACCTCATCATTTATCCT 58.131 40.000 0.00 0.00 0.00 3.24
269 270 8.001300 TCTCCTCTACCTCATCATTTATCCTA 57.999 38.462 0.00 0.00 0.00 2.94
270 271 7.891183 TCTCCTCTACCTCATCATTTATCCTAC 59.109 40.741 0.00 0.00 0.00 3.18
271 272 6.659668 TCCTCTACCTCATCATTTATCCTACG 59.340 42.308 0.00 0.00 0.00 3.51
272 273 6.434652 CCTCTACCTCATCATTTATCCTACGT 59.565 42.308 0.00 0.00 0.00 3.57
273 274 7.215719 TCTACCTCATCATTTATCCTACGTG 57.784 40.000 0.00 0.00 0.00 4.49
274 275 5.215252 ACCTCATCATTTATCCTACGTGG 57.785 43.478 0.00 0.00 37.10 4.94
275 276 3.997021 CCTCATCATTTATCCTACGTGGC 59.003 47.826 0.00 0.00 35.26 5.01
276 277 4.503123 CCTCATCATTTATCCTACGTGGCA 60.503 45.833 0.00 0.00 35.26 4.92
277 278 5.227569 TCATCATTTATCCTACGTGGCAT 57.772 39.130 0.00 0.00 35.26 4.40
278 279 5.620206 TCATCATTTATCCTACGTGGCATT 58.380 37.500 0.00 0.00 35.26 3.56
279 280 5.469760 TCATCATTTATCCTACGTGGCATTG 59.530 40.000 0.00 0.00 35.26 2.82
280 281 3.563808 TCATTTATCCTACGTGGCATTGC 59.436 43.478 0.00 0.00 35.26 3.56
281 282 3.275617 TTTATCCTACGTGGCATTGCT 57.724 42.857 8.82 0.00 35.26 3.91
282 283 4.409718 TTTATCCTACGTGGCATTGCTA 57.590 40.909 8.82 0.00 35.26 3.49
283 284 4.409718 TTATCCTACGTGGCATTGCTAA 57.590 40.909 8.82 0.00 35.26 3.09
284 285 2.309528 TCCTACGTGGCATTGCTAAG 57.690 50.000 8.82 7.52 35.26 2.18
285 286 1.828595 TCCTACGTGGCATTGCTAAGA 59.171 47.619 14.29 0.00 35.26 2.10
286 287 2.434336 TCCTACGTGGCATTGCTAAGAT 59.566 45.455 14.29 2.45 35.26 2.40
287 288 3.639561 TCCTACGTGGCATTGCTAAGATA 59.360 43.478 14.29 3.37 35.26 1.98
288 289 4.100344 TCCTACGTGGCATTGCTAAGATAA 59.900 41.667 14.29 0.00 35.26 1.75
289 290 4.814234 CCTACGTGGCATTGCTAAGATAAA 59.186 41.667 14.29 0.00 0.00 1.40
290 291 5.295787 CCTACGTGGCATTGCTAAGATAAAA 59.704 40.000 14.29 0.00 0.00 1.52
291 292 4.981794 ACGTGGCATTGCTAAGATAAAAC 58.018 39.130 14.29 0.00 0.00 2.43
292 293 4.142469 ACGTGGCATTGCTAAGATAAAACC 60.142 41.667 14.29 0.00 0.00 3.27
293 294 4.142491 CGTGGCATTGCTAAGATAAAACCA 60.142 41.667 8.82 0.00 0.00 3.67
294 295 5.450412 CGTGGCATTGCTAAGATAAAACCAT 60.450 40.000 8.82 0.00 0.00 3.55
295 296 6.340522 GTGGCATTGCTAAGATAAAACCATT 58.659 36.000 8.82 0.00 0.00 3.16
296 297 6.256321 GTGGCATTGCTAAGATAAAACCATTG 59.744 38.462 8.82 0.00 0.00 2.82
297 298 6.070881 TGGCATTGCTAAGATAAAACCATTGT 60.071 34.615 8.82 0.00 0.00 2.71
298 299 7.123397 TGGCATTGCTAAGATAAAACCATTGTA 59.877 33.333 8.82 0.00 0.00 2.41
299 300 7.435192 GGCATTGCTAAGATAAAACCATTGTAC 59.565 37.037 8.82 0.00 0.00 2.90
300 301 7.973388 GCATTGCTAAGATAAAACCATTGTACA 59.027 33.333 0.16 0.00 0.00 2.90
303 304 7.479980 TGCTAAGATAAAACCATTGTACATGC 58.520 34.615 0.00 0.00 0.00 4.06
304 305 6.918022 GCTAAGATAAAACCATTGTACATGCC 59.082 38.462 0.00 0.00 0.00 4.40
305 306 5.852282 AGATAAAACCATTGTACATGCCC 57.148 39.130 0.00 0.00 0.00 5.36
350 351 1.817357 CATCAGCTCAAGACAGCCAA 58.183 50.000 0.00 0.00 40.65 4.52
358 359 1.081892 CAAGACAGCCAAGACCATCG 58.918 55.000 0.00 0.00 0.00 3.84
388 389 2.555782 CACGTACGGTCGTCGGAA 59.444 61.111 21.06 0.00 42.27 4.30
407 408 0.179029 ACCCATAATTTCTCCGGCGG 60.179 55.000 22.51 22.51 0.00 6.13
408 409 0.179029 CCCATAATTTCTCCGGCGGT 60.179 55.000 27.32 7.89 0.00 5.68
409 410 1.226746 CCATAATTTCTCCGGCGGTC 58.773 55.000 27.32 0.00 0.00 4.79
410 411 1.226746 CATAATTTCTCCGGCGGTCC 58.773 55.000 27.32 0.00 0.00 4.46
411 412 0.834612 ATAATTTCTCCGGCGGTCCA 59.165 50.000 27.32 5.60 0.00 4.02
412 413 0.614294 TAATTTCTCCGGCGGTCCAA 59.386 50.000 27.32 16.53 0.00 3.53
413 414 0.250989 AATTTCTCCGGCGGTCCAAA 60.251 50.000 27.32 21.34 0.00 3.28
414 415 0.958876 ATTTCTCCGGCGGTCCAAAC 60.959 55.000 27.32 0.00 0.00 2.93
416 417 4.367023 CTCCGGCGGTCCAAACGA 62.367 66.667 27.32 2.13 0.00 3.85
417 418 4.668118 TCCGGCGGTCCAAACGAC 62.668 66.667 27.32 0.00 41.15 4.34
424 425 2.667199 GTCCAAACGACCCACCCG 60.667 66.667 0.00 0.00 35.23 5.28
425 426 4.629523 TCCAAACGACCCACCCGC 62.630 66.667 0.00 0.00 0.00 6.13
501 502 4.148825 CCCTCGGTCTCGGCCTTG 62.149 72.222 0.00 0.00 36.95 3.61
502 503 4.821589 CCTCGGTCTCGGCCTTGC 62.822 72.222 0.00 0.00 36.95 4.01
503 504 4.821589 CTCGGTCTCGGCCTTGCC 62.822 72.222 0.00 0.00 46.75 4.52
512 513 4.423231 GGCCTTGCCTTTGCTAGT 57.577 55.556 0.00 0.00 46.69 2.57
513 514 2.658548 GGCCTTGCCTTTGCTAGTT 58.341 52.632 0.00 0.00 46.69 2.24
514 515 0.244721 GGCCTTGCCTTTGCTAGTTG 59.755 55.000 0.00 0.00 46.69 3.16
515 516 0.389037 GCCTTGCCTTTGCTAGTTGC 60.389 55.000 0.00 0.00 38.48 4.17
516 517 1.251251 CCTTGCCTTTGCTAGTTGCT 58.749 50.000 0.00 0.00 43.37 3.91
517 518 1.200948 CCTTGCCTTTGCTAGTTGCTC 59.799 52.381 0.00 0.00 43.37 4.26
518 519 2.157738 CTTGCCTTTGCTAGTTGCTCT 58.842 47.619 0.00 0.00 43.37 4.09
519 520 2.276732 TGCCTTTGCTAGTTGCTCTT 57.723 45.000 0.00 0.00 43.37 2.85
520 521 2.154462 TGCCTTTGCTAGTTGCTCTTC 58.846 47.619 0.00 0.00 43.37 2.87
521 522 2.224621 TGCCTTTGCTAGTTGCTCTTCT 60.225 45.455 0.00 0.00 43.37 2.85
522 523 2.418280 GCCTTTGCTAGTTGCTCTTCTC 59.582 50.000 0.00 0.00 43.37 2.87
523 524 3.867984 GCCTTTGCTAGTTGCTCTTCTCT 60.868 47.826 0.00 0.00 43.37 3.10
524 525 4.322567 CCTTTGCTAGTTGCTCTTCTCTT 58.677 43.478 0.00 0.00 43.37 2.85
531 532 2.968574 AGTTGCTCTTCTCTTCCTGTCA 59.031 45.455 0.00 0.00 0.00 3.58
562 563 1.029681 TCGCTTCTAGGAATGCGCTA 58.970 50.000 9.73 0.00 46.73 4.26
582 592 5.164954 GCTAACATCTCTGTTTTCTCTCGT 58.835 41.667 0.00 0.00 43.05 4.18
689 700 4.909696 ATCTCACACCAGATCGAGTTAG 57.090 45.455 0.00 0.00 0.00 2.34
690 701 3.951663 TCTCACACCAGATCGAGTTAGA 58.048 45.455 0.00 0.00 0.00 2.10
713 724 0.242017 GGCTGCAAAGACCATGACAC 59.758 55.000 0.50 0.00 0.00 3.67
750 765 1.742761 CCATGTACAAGCACCCTCTG 58.257 55.000 0.00 0.00 0.00 3.35
758 773 2.743928 GCACCCTCTGCTGAACCG 60.744 66.667 0.00 0.00 43.33 4.44
759 774 2.743928 CACCCTCTGCTGAACCGC 60.744 66.667 0.00 0.00 0.00 5.68
760 775 2.925170 ACCCTCTGCTGAACCGCT 60.925 61.111 0.00 0.00 0.00 5.52
761 776 2.125350 CCCTCTGCTGAACCGCTC 60.125 66.667 0.00 0.00 0.00 5.03
762 777 2.507992 CCTCTGCTGAACCGCTCG 60.508 66.667 0.00 0.00 0.00 5.03
763 778 3.184683 CTCTGCTGAACCGCTCGC 61.185 66.667 0.00 0.00 0.00 5.03
764 779 4.742201 TCTGCTGAACCGCTCGCC 62.742 66.667 0.00 0.00 0.00 5.54
794 809 6.832520 TGAAAGTATTTGCTTGGCTAATCA 57.167 33.333 2.91 0.00 39.27 2.57
813 828 8.114290 GCTAATCACGAATCAAACGATAAAGAA 58.886 33.333 0.00 0.00 34.70 2.52
814 829 9.409949 CTAATCACGAATCAAACGATAAAGAAC 57.590 33.333 0.00 0.00 34.70 3.01
815 830 7.596749 ATCACGAATCAAACGATAAAGAACT 57.403 32.000 0.00 0.00 34.70 3.01
834 849 7.859325 AGAACTACTAGCAACAACTTTTTCA 57.141 32.000 0.00 0.00 0.00 2.69
839 854 8.784043 ACTACTAGCAACAACTTTTTCATTAGG 58.216 33.333 0.00 0.00 0.00 2.69
840 855 6.447162 ACTAGCAACAACTTTTTCATTAGGC 58.553 36.000 0.00 0.00 0.00 3.93
841 856 5.535753 AGCAACAACTTTTTCATTAGGCT 57.464 34.783 0.00 0.00 0.00 4.58
842 857 6.648879 AGCAACAACTTTTTCATTAGGCTA 57.351 33.333 0.00 0.00 0.00 3.93
851 876 4.678509 TTTCATTAGGCTACAAGCAACG 57.321 40.909 0.00 0.00 44.75 4.10
912 942 2.433664 CGTACAACCAGTCGCCCC 60.434 66.667 0.00 0.00 0.00 5.80
929 959 0.896940 CCCGCCCGCCTATAAGTAGA 60.897 60.000 0.00 0.00 0.00 2.59
983 1013 2.972713 AGCTTCACACACTTCCTTCCTA 59.027 45.455 0.00 0.00 0.00 2.94
1034 1067 2.571757 CTCCTACGCGCAAGACCA 59.428 61.111 5.73 0.00 43.02 4.02
1587 1620 2.887568 GTCTCCATCGCCAGCGTG 60.888 66.667 12.32 9.41 40.74 5.34
2105 2144 6.647067 GTCTGCAATAACTGTACTCAAGTTCT 59.353 38.462 0.67 0.00 0.00 3.01
2106 2145 7.171678 GTCTGCAATAACTGTACTCAAGTTCTT 59.828 37.037 0.67 0.00 0.00 2.52
2107 2146 7.715249 TCTGCAATAACTGTACTCAAGTTCTTT 59.285 33.333 0.67 0.00 0.00 2.52
2108 2147 7.639039 TGCAATAACTGTACTCAAGTTCTTTG 58.361 34.615 0.67 7.64 38.17 2.77
2185 2224 2.857152 TGTTGCTTTCGTGTTGCATTTC 59.143 40.909 0.00 0.00 36.55 2.17
2193 2232 1.135859 CGTGTTGCATTTCTCTGGCTC 60.136 52.381 0.00 0.00 0.00 4.70
2254 2293 1.883275 CTAGCAGCCTAGCAGATACGT 59.117 52.381 0.00 0.00 35.06 3.57
2255 2294 1.115467 AGCAGCCTAGCAGATACGTT 58.885 50.000 0.00 0.00 36.85 3.99
2256 2295 2.307768 AGCAGCCTAGCAGATACGTTA 58.692 47.619 0.00 0.00 36.85 3.18
2257 2296 2.034812 AGCAGCCTAGCAGATACGTTAC 59.965 50.000 0.00 0.00 36.85 2.50
2258 2297 2.862921 GCAGCCTAGCAGATACGTTACC 60.863 54.545 0.00 0.00 0.00 2.85
2300 2339 7.392494 CAGTAAGTACTCCTACTGTGAATCA 57.608 40.000 19.99 0.00 36.21 2.57
2301 2340 7.476667 CAGTAAGTACTCCTACTGTGAATCAG 58.523 42.308 19.99 0.00 41.17 2.90
2302 2341 7.121463 CAGTAAGTACTCCTACTGTGAATCAGT 59.879 40.741 19.99 5.82 45.84 3.41
2332 2374 0.620556 AGCCTAGCTTGCAGCCTTTA 59.379 50.000 10.17 0.00 43.77 1.85
2342 2384 4.575885 CTTGCAGCCTTTAGTACTTGGTA 58.424 43.478 0.00 0.00 0.00 3.25
2399 2441 0.693622 TTATCAAACGGGCCACTGGA 59.306 50.000 4.39 0.00 0.00 3.86
2421 2463 1.470996 ATTTTGGGCCGCACACACAT 61.471 50.000 0.00 0.00 0.00 3.21
2454 2504 5.396884 GCTAGAGTTGGGATGGTTGATAGTT 60.397 44.000 0.00 0.00 0.00 2.24
2458 2511 6.012858 AGAGTTGGGATGGTTGATAGTTTGTA 60.013 38.462 0.00 0.00 0.00 2.41
2459 2512 5.944007 AGTTGGGATGGTTGATAGTTTGTAC 59.056 40.000 0.00 0.00 0.00 2.90
2460 2513 5.772393 TGGGATGGTTGATAGTTTGTACT 57.228 39.130 0.00 0.00 38.44 2.73
2461 2514 6.877668 TGGGATGGTTGATAGTTTGTACTA 57.122 37.500 0.00 0.00 40.96 1.82
2492 2545 1.226888 GCAACTAGGCGACGGGTAG 60.227 63.158 0.00 0.00 0.00 3.18
2513 2566 2.355115 GGTTCCCAGGGTGCGATT 59.645 61.111 5.01 0.00 0.00 3.34
2578 2639 1.081892 CGAGCACAAGCAGCAACTAT 58.918 50.000 0.00 0.00 45.49 2.12
2636 2704 9.912634 ATATCTGTCGATTTGAAACAATTTTGT 57.087 25.926 0.00 0.00 44.72 2.83
2638 2706 6.019961 TCTGTCGATTTGAAACAATTTTGTGC 60.020 34.615 0.00 0.00 41.31 4.57
2639 2707 5.809562 TGTCGATTTGAAACAATTTTGTGCT 59.190 32.000 0.00 0.00 41.31 4.40
2641 2709 5.233902 TCGATTTGAAACAATTTTGTGCTGG 59.766 36.000 0.00 0.00 41.31 4.85
2642 2710 5.006552 CGATTTGAAACAATTTTGTGCTGGT 59.993 36.000 0.00 0.00 41.31 4.00
2712 3146 1.063174 ACGCGATACAGTTCGTAGGAC 59.937 52.381 15.93 0.00 41.16 3.85
2749 3183 6.405278 AGTTCAAAATGGACCGAAAAGATT 57.595 33.333 0.00 0.00 0.00 2.40
2757 3191 1.130561 GACCGAAAAGATTGAAGGGCG 59.869 52.381 0.00 0.00 0.00 6.13
2804 3242 4.040936 TGGCTGGCCTAAAAGTTGAATA 57.959 40.909 13.05 0.00 36.94 1.75
2810 3248 3.761752 GGCCTAAAAGTTGAATACAGCCA 59.238 43.478 0.00 0.00 36.67 4.75
2811 3249 4.380550 GGCCTAAAAGTTGAATACAGCCAC 60.381 45.833 0.00 0.00 36.67 5.01
2813 3251 4.454504 CCTAAAAGTTGAATACAGCCACGT 59.545 41.667 0.00 0.00 0.00 4.49
2850 3299 0.617820 AGCCGTGTAGGGACCTCAAT 60.618 55.000 0.00 0.00 41.48 2.57
2910 3361 4.174009 CCGCATCGGTAGTAATAATCTGG 58.826 47.826 0.00 0.00 42.73 3.86
2911 3362 4.174009 CGCATCGGTAGTAATAATCTGGG 58.826 47.826 0.00 0.00 0.00 4.45
2912 3363 4.504858 GCATCGGTAGTAATAATCTGGGG 58.495 47.826 0.00 0.00 0.00 4.96
2913 3364 4.020485 GCATCGGTAGTAATAATCTGGGGT 60.020 45.833 0.00 0.00 0.00 4.95
2914 3365 5.512576 GCATCGGTAGTAATAATCTGGGGTT 60.513 44.000 0.00 0.00 0.00 4.11
2915 3366 6.531021 CATCGGTAGTAATAATCTGGGGTTT 58.469 40.000 0.00 0.00 0.00 3.27
2916 3367 6.564557 TCGGTAGTAATAATCTGGGGTTTT 57.435 37.500 0.00 0.00 0.00 2.43
2917 3368 6.350906 TCGGTAGTAATAATCTGGGGTTTTG 58.649 40.000 0.00 0.00 0.00 2.44
2918 3369 5.529800 CGGTAGTAATAATCTGGGGTTTTGG 59.470 44.000 0.00 0.00 0.00 3.28
2919 3370 5.301045 GGTAGTAATAATCTGGGGTTTTGGC 59.699 44.000 0.00 0.00 0.00 4.52
2920 3371 4.941713 AGTAATAATCTGGGGTTTTGGCA 58.058 39.130 0.00 0.00 0.00 4.92
2921 3372 5.337788 AGTAATAATCTGGGGTTTTGGCAA 58.662 37.500 0.00 0.00 0.00 4.52
2922 3373 5.782845 AGTAATAATCTGGGGTTTTGGCAAA 59.217 36.000 8.93 8.93 0.00 3.68
2923 3374 5.574970 AATAATCTGGGGTTTTGGCAAAA 57.425 34.783 20.81 20.81 0.00 2.44
2924 3375 5.777526 ATAATCTGGGGTTTTGGCAAAAT 57.222 34.783 26.41 11.74 32.22 1.82
2925 3376 6.882768 ATAATCTGGGGTTTTGGCAAAATA 57.117 33.333 26.41 13.42 32.22 1.40
2926 3377 5.574970 AATCTGGGGTTTTGGCAAAATAA 57.425 34.783 26.41 12.48 32.22 1.40
2927 3378 5.574970 ATCTGGGGTTTTGGCAAAATAAA 57.425 34.783 26.41 12.79 32.22 1.40
2928 3379 5.373812 TCTGGGGTTTTGGCAAAATAAAA 57.626 34.783 26.41 13.10 32.22 1.52
2929 3380 5.126779 TCTGGGGTTTTGGCAAAATAAAAC 58.873 37.500 26.41 14.78 42.87 2.43
2930 3381 5.104318 TCTGGGGTTTTGGCAAAATAAAACT 60.104 36.000 26.41 0.00 43.06 2.66
2931 3382 4.884164 TGGGGTTTTGGCAAAATAAAACTG 59.116 37.500 26.41 0.00 43.06 3.16
2932 3383 4.277174 GGGGTTTTGGCAAAATAAAACTGG 59.723 41.667 26.41 0.00 43.06 4.00
2933 3384 4.277174 GGGTTTTGGCAAAATAAAACTGGG 59.723 41.667 26.41 0.00 43.06 4.45
2934 3385 5.126779 GGTTTTGGCAAAATAAAACTGGGA 58.873 37.500 26.41 0.00 43.06 4.37
2935 3386 5.590663 GGTTTTGGCAAAATAAAACTGGGAA 59.409 36.000 26.41 0.00 43.06 3.97
2936 3387 6.264292 GGTTTTGGCAAAATAAAACTGGGAAT 59.736 34.615 26.41 0.00 43.06 3.01
2937 3388 6.874288 TTTGGCAAAATAAAACTGGGAATG 57.126 33.333 10.83 0.00 0.00 2.67
2938 3389 4.322567 TGGCAAAATAAAACTGGGAATGC 58.677 39.130 0.00 0.00 0.00 3.56
2939 3390 4.041444 TGGCAAAATAAAACTGGGAATGCT 59.959 37.500 0.00 0.00 0.00 3.79
2940 3391 4.392754 GGCAAAATAAAACTGGGAATGCTG 59.607 41.667 0.00 0.00 0.00 4.41
2941 3392 4.392754 GCAAAATAAAACTGGGAATGCTGG 59.607 41.667 0.00 0.00 0.00 4.85
2942 3393 5.550290 CAAAATAAAACTGGGAATGCTGGT 58.450 37.500 0.00 0.00 0.00 4.00
2943 3394 5.405935 AAATAAAACTGGGAATGCTGGTC 57.594 39.130 0.00 0.00 0.00 4.02
2944 3395 2.380064 AAAACTGGGAATGCTGGTCA 57.620 45.000 0.00 0.00 0.00 4.02
2945 3396 1.915141 AAACTGGGAATGCTGGTCAG 58.085 50.000 0.00 0.00 0.00 3.51
2946 3397 0.773644 AACTGGGAATGCTGGTCAGT 59.226 50.000 0.00 0.00 39.97 3.41
2947 3398 0.037303 ACTGGGAATGCTGGTCAGTG 59.963 55.000 0.00 0.00 37.31 3.66
2948 3399 0.679002 CTGGGAATGCTGGTCAGTGG 60.679 60.000 0.00 0.00 0.00 4.00
2949 3400 1.380302 GGGAATGCTGGTCAGTGGT 59.620 57.895 0.00 0.00 0.00 4.16
2950 3401 0.678048 GGGAATGCTGGTCAGTGGTC 60.678 60.000 0.00 0.00 0.00 4.02
2951 3402 0.036732 GGAATGCTGGTCAGTGGTCA 59.963 55.000 0.00 0.00 0.00 4.02
2952 3403 1.160137 GAATGCTGGTCAGTGGTCAC 58.840 55.000 0.00 0.00 0.00 3.67
2953 3404 0.473755 AATGCTGGTCAGTGGTCACA 59.526 50.000 3.82 0.00 0.00 3.58
2954 3405 0.473755 ATGCTGGTCAGTGGTCACAA 59.526 50.000 3.82 0.00 0.00 3.33
2955 3406 0.463654 TGCTGGTCAGTGGTCACAAC 60.464 55.000 3.82 1.67 0.00 3.32
2956 3407 1.498865 GCTGGTCAGTGGTCACAACG 61.499 60.000 3.82 0.00 0.00 4.10
2957 3408 0.104120 CTGGTCAGTGGTCACAACGA 59.896 55.000 3.82 0.00 0.00 3.85
2958 3409 0.179094 TGGTCAGTGGTCACAACGAC 60.179 55.000 3.82 6.79 44.57 4.34
2971 3422 3.362295 CACAACGACACAATGTGAAAGG 58.638 45.455 21.34 8.10 45.61 3.11
2972 3423 3.013921 ACAACGACACAATGTGAAAGGT 58.986 40.909 21.34 8.71 36.96 3.50
2973 3424 3.442273 ACAACGACACAATGTGAAAGGTT 59.558 39.130 21.34 13.77 36.96 3.50
2974 3425 4.636648 ACAACGACACAATGTGAAAGGTTA 59.363 37.500 21.34 0.00 36.96 2.85
2975 3426 5.298276 ACAACGACACAATGTGAAAGGTTAT 59.702 36.000 21.34 4.71 36.96 1.89
2976 3427 6.183360 ACAACGACACAATGTGAAAGGTTATT 60.183 34.615 21.34 5.93 36.96 1.40
2977 3428 5.757886 ACGACACAATGTGAAAGGTTATTG 58.242 37.500 21.34 1.33 36.96 1.90
2978 3429 5.298276 ACGACACAATGTGAAAGGTTATTGT 59.702 36.000 21.34 1.98 42.61 2.71
2981 3432 4.881920 ACAATGTGAAAGGTTATTGTGCC 58.118 39.130 0.00 0.00 40.93 5.01
2982 3433 4.244862 CAATGTGAAAGGTTATTGTGCCC 58.755 43.478 0.00 0.00 0.00 5.36
2983 3434 2.950781 TGTGAAAGGTTATTGTGCCCA 58.049 42.857 0.00 0.00 0.00 5.36
2984 3435 3.505386 TGTGAAAGGTTATTGTGCCCAT 58.495 40.909 0.00 0.00 0.00 4.00
2985 3436 4.667573 TGTGAAAGGTTATTGTGCCCATA 58.332 39.130 0.00 0.00 0.00 2.74
2986 3437 4.461081 TGTGAAAGGTTATTGTGCCCATAC 59.539 41.667 0.00 0.00 0.00 2.39
2987 3438 4.461081 GTGAAAGGTTATTGTGCCCATACA 59.539 41.667 0.00 0.00 0.00 2.29
2988 3439 4.461081 TGAAAGGTTATTGTGCCCATACAC 59.539 41.667 0.00 0.00 41.10 2.90
2994 3445 2.622965 TGTGCCCATACACACAACG 58.377 52.632 0.00 0.00 45.36 4.10
2995 3446 0.179043 TGTGCCCATACACACAACGT 60.179 50.000 0.00 0.00 45.36 3.99
2996 3447 0.948678 GTGCCCATACACACAACGTT 59.051 50.000 0.00 0.00 40.40 3.99
2997 3448 1.335496 GTGCCCATACACACAACGTTT 59.665 47.619 0.00 0.00 40.40 3.60
2998 3449 2.025155 TGCCCATACACACAACGTTTT 58.975 42.857 0.00 0.00 0.00 2.43
2999 3450 2.427453 TGCCCATACACACAACGTTTTT 59.573 40.909 0.00 0.00 0.00 1.94
3000 3451 2.792116 GCCCATACACACAACGTTTTTG 59.208 45.455 0.00 1.00 0.00 2.44
3001 3452 3.489398 GCCCATACACACAACGTTTTTGA 60.489 43.478 12.56 0.00 0.00 2.69
3002 3453 4.039032 CCCATACACACAACGTTTTTGAC 58.961 43.478 12.56 0.00 0.00 3.18
3003 3454 4.039032 CCATACACACAACGTTTTTGACC 58.961 43.478 12.56 0.00 0.00 4.02
3004 3455 4.438880 CCATACACACAACGTTTTTGACCA 60.439 41.667 12.56 0.00 0.00 4.02
3005 3456 3.644884 ACACACAACGTTTTTGACCAA 57.355 38.095 12.56 0.00 0.00 3.67
3006 3457 3.310246 ACACACAACGTTTTTGACCAAC 58.690 40.909 12.56 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.224992 ACCATTGTACATGCCCTCAACA 60.225 45.455 0.00 0.00 0.00 3.33
31 32 2.040947 TCAACCATTGTACATGCCCTCA 59.959 45.455 0.00 0.00 0.00 3.86
32 33 2.722094 TCAACCATTGTACATGCCCTC 58.278 47.619 0.00 0.00 0.00 4.30
33 34 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
34 35 5.590530 TTTATCAACCATTGTACATGCCC 57.409 39.130 0.00 0.00 0.00 5.36
35 36 5.914635 CGATTTATCAACCATTGTACATGCC 59.085 40.000 0.00 0.00 0.00 4.40
36 37 5.914635 CCGATTTATCAACCATTGTACATGC 59.085 40.000 0.00 0.00 0.00 4.06
37 38 7.012327 AGACCGATTTATCAACCATTGTACATG 59.988 37.037 0.00 0.00 0.00 3.21
38 39 7.054124 AGACCGATTTATCAACCATTGTACAT 58.946 34.615 0.00 0.00 0.00 2.29
39 40 6.411376 AGACCGATTTATCAACCATTGTACA 58.589 36.000 0.00 0.00 0.00 2.90
40 41 6.920569 AGACCGATTTATCAACCATTGTAC 57.079 37.500 0.00 0.00 0.00 2.90
41 42 9.268268 GATAAGACCGATTTATCAACCATTGTA 57.732 33.333 7.97 0.00 37.43 2.41
42 43 7.993183 AGATAAGACCGATTTATCAACCATTGT 59.007 33.333 12.72 0.00 39.09 2.71
43 44 8.383318 AGATAAGACCGATTTATCAACCATTG 57.617 34.615 12.72 0.00 39.09 2.82
44 45 8.980481 AAGATAAGACCGATTTATCAACCATT 57.020 30.769 12.72 0.91 39.09 3.16
46 47 9.893634 TTTAAGATAAGACCGATTTATCAACCA 57.106 29.630 12.72 0.00 39.09 3.67
53 54 9.607988 TGCAAGATTTAAGATAAGACCGATTTA 57.392 29.630 0.00 0.00 0.00 1.40
54 55 8.506168 TGCAAGATTTAAGATAAGACCGATTT 57.494 30.769 0.00 0.00 0.00 2.17
55 56 8.562892 CATGCAAGATTTAAGATAAGACCGATT 58.437 33.333 0.00 0.00 0.00 3.34
56 57 7.716998 ACATGCAAGATTTAAGATAAGACCGAT 59.283 33.333 0.00 0.00 0.00 4.18
57 58 7.047891 ACATGCAAGATTTAAGATAAGACCGA 58.952 34.615 0.00 0.00 0.00 4.69
58 59 7.251704 ACATGCAAGATTTAAGATAAGACCG 57.748 36.000 0.00 0.00 0.00 4.79
99 100 8.585471 AGATGATCCATTGTAGACATGTTTTT 57.415 30.769 0.00 0.00 0.00 1.94
100 101 8.051535 AGAGATGATCCATTGTAGACATGTTTT 58.948 33.333 0.00 0.00 0.00 2.43
101 102 7.571919 AGAGATGATCCATTGTAGACATGTTT 58.428 34.615 0.00 0.00 0.00 2.83
102 103 7.134362 AGAGATGATCCATTGTAGACATGTT 57.866 36.000 0.00 0.00 0.00 2.71
103 104 6.744175 AGAGATGATCCATTGTAGACATGT 57.256 37.500 0.00 0.00 0.00 3.21
104 105 7.331440 GCTAAGAGATGATCCATTGTAGACATG 59.669 40.741 0.00 0.00 0.00 3.21
105 106 7.385267 GCTAAGAGATGATCCATTGTAGACAT 58.615 38.462 0.00 0.00 0.00 3.06
106 107 6.239430 GGCTAAGAGATGATCCATTGTAGACA 60.239 42.308 0.00 0.00 0.00 3.41
107 108 6.014669 AGGCTAAGAGATGATCCATTGTAGAC 60.015 42.308 0.00 0.00 0.00 2.59
108 109 6.080682 AGGCTAAGAGATGATCCATTGTAGA 58.919 40.000 0.00 0.00 0.00 2.59
109 110 6.357579 AGGCTAAGAGATGATCCATTGTAG 57.642 41.667 0.00 0.00 0.00 2.74
110 111 6.753913 AAGGCTAAGAGATGATCCATTGTA 57.246 37.500 0.00 0.00 0.00 2.41
111 112 5.643421 AAGGCTAAGAGATGATCCATTGT 57.357 39.130 0.00 0.00 0.00 2.71
112 113 7.622713 AGATAAGGCTAAGAGATGATCCATTG 58.377 38.462 0.00 0.00 0.00 2.82
113 114 7.811482 AGATAAGGCTAAGAGATGATCCATT 57.189 36.000 0.00 0.00 0.00 3.16
114 115 7.457218 TGAAGATAAGGCTAAGAGATGATCCAT 59.543 37.037 0.00 0.00 0.00 3.41
115 116 6.784473 TGAAGATAAGGCTAAGAGATGATCCA 59.216 38.462 0.00 0.00 0.00 3.41
116 117 7.238486 TGAAGATAAGGCTAAGAGATGATCC 57.762 40.000 0.00 0.00 0.00 3.36
119 120 9.988815 GTTATTGAAGATAAGGCTAAGAGATGA 57.011 33.333 0.00 0.00 0.00 2.92
120 121 9.995003 AGTTATTGAAGATAAGGCTAAGAGATG 57.005 33.333 0.00 0.00 0.00 2.90
155 156 9.669353 GCACAATATGTCTCACCATATTTTTAG 57.331 33.333 4.17 0.00 42.54 1.85
156 157 9.407380 AGCACAATATGTCTCACCATATTTTTA 57.593 29.630 4.17 0.00 42.54 1.52
157 158 8.297470 AGCACAATATGTCTCACCATATTTTT 57.703 30.769 4.17 0.00 42.54 1.94
158 159 7.886629 AGCACAATATGTCTCACCATATTTT 57.113 32.000 4.17 0.00 42.54 1.82
159 160 8.978874 TTAGCACAATATGTCTCACCATATTT 57.021 30.769 4.17 0.00 42.54 1.40
160 161 8.432013 TCTTAGCACAATATGTCTCACCATATT 58.568 33.333 0.00 0.00 44.78 1.28
161 162 7.966812 TCTTAGCACAATATGTCTCACCATAT 58.033 34.615 0.00 0.00 39.20 1.78
162 163 7.287696 TCTCTTAGCACAATATGTCTCACCATA 59.712 37.037 0.00 0.00 0.00 2.74
163 164 6.098838 TCTCTTAGCACAATATGTCTCACCAT 59.901 38.462 0.00 0.00 0.00 3.55
164 165 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
165 166 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
166 167 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
167 168 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
168 169 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
169 170 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
170 171 8.464770 GAGATGATCTCTTAGCACAATATGTC 57.535 38.462 14.98 0.00 40.30 3.06
185 186 4.942761 AGAGAAGGCAAGAGATGATCTC 57.057 45.455 14.47 14.47 43.70 2.75
186 187 6.805016 TTAAGAGAAGGCAAGAGATGATCT 57.195 37.500 0.00 0.00 41.27 2.75
187 188 9.553064 TTAATTAAGAGAAGGCAAGAGATGATC 57.447 33.333 0.00 0.00 0.00 2.92
188 189 9.558396 CTTAATTAAGAGAAGGCAAGAGATGAT 57.442 33.333 18.69 0.00 35.33 2.45
189 190 8.762645 TCTTAATTAAGAGAAGGCAAGAGATGA 58.237 33.333 21.46 0.00 37.40 2.92
190 191 8.954950 TCTTAATTAAGAGAAGGCAAGAGATG 57.045 34.615 21.46 0.00 37.40 2.90
204 205 8.779354 GAAGGCTTGTCTTCTCTTAATTAAGA 57.221 34.615 23.26 23.26 39.84 2.10
216 217 7.552330 AGAAATCATAAGAGAAGGCTTGTCTTC 59.448 37.037 34.48 22.04 41.71 2.87
217 218 7.401246 AGAAATCATAAGAGAAGGCTTGTCTT 58.599 34.615 33.39 33.39 44.39 3.01
218 219 6.956497 AGAAATCATAAGAGAAGGCTTGTCT 58.044 36.000 20.19 20.19 34.32 3.41
219 220 7.047271 AGAGAAATCATAAGAGAAGGCTTGTC 58.953 38.462 16.04 16.04 0.00 3.18
220 221 6.956497 AGAGAAATCATAAGAGAAGGCTTGT 58.044 36.000 3.46 0.00 0.00 3.16
221 222 7.274447 AGAGAGAAATCATAAGAGAAGGCTTG 58.726 38.462 3.46 0.00 0.00 4.01
222 223 7.418942 GGAGAGAGAAATCATAAGAGAAGGCTT 60.419 40.741 0.00 0.00 0.00 4.35
223 224 6.041979 GGAGAGAGAAATCATAAGAGAAGGCT 59.958 42.308 0.00 0.00 0.00 4.58
224 225 6.041979 AGGAGAGAGAAATCATAAGAGAAGGC 59.958 42.308 0.00 0.00 0.00 4.35
225 226 7.506938 AGAGGAGAGAGAAATCATAAGAGAAGG 59.493 40.741 0.00 0.00 0.00 3.46
226 227 8.469309 AGAGGAGAGAGAAATCATAAGAGAAG 57.531 38.462 0.00 0.00 0.00 2.85
227 228 9.349713 GTAGAGGAGAGAGAAATCATAAGAGAA 57.650 37.037 0.00 0.00 0.00 2.87
228 229 7.942341 GGTAGAGGAGAGAGAAATCATAAGAGA 59.058 40.741 0.00 0.00 0.00 3.10
229 230 7.944554 AGGTAGAGGAGAGAGAAATCATAAGAG 59.055 40.741 0.00 0.00 0.00 2.85
230 231 7.821566 AGGTAGAGGAGAGAGAAATCATAAGA 58.178 38.462 0.00 0.00 0.00 2.10
231 232 7.723616 TGAGGTAGAGGAGAGAGAAATCATAAG 59.276 40.741 0.00 0.00 0.00 1.73
232 233 7.587258 TGAGGTAGAGGAGAGAGAAATCATAA 58.413 38.462 0.00 0.00 0.00 1.90
233 234 7.155442 TGAGGTAGAGGAGAGAGAAATCATA 57.845 40.000 0.00 0.00 0.00 2.15
234 235 6.024563 TGAGGTAGAGGAGAGAGAAATCAT 57.975 41.667 0.00 0.00 0.00 2.45
235 236 5.458451 TGAGGTAGAGGAGAGAGAAATCA 57.542 43.478 0.00 0.00 0.00 2.57
236 237 6.068010 TGATGAGGTAGAGGAGAGAGAAATC 58.932 44.000 0.00 0.00 0.00 2.17
237 238 6.024563 TGATGAGGTAGAGGAGAGAGAAAT 57.975 41.667 0.00 0.00 0.00 2.17
238 239 5.458451 TGATGAGGTAGAGGAGAGAGAAA 57.542 43.478 0.00 0.00 0.00 2.52
239 240 5.661503 ATGATGAGGTAGAGGAGAGAGAA 57.338 43.478 0.00 0.00 0.00 2.87
240 241 5.661503 AATGATGAGGTAGAGGAGAGAGA 57.338 43.478 0.00 0.00 0.00 3.10
241 242 7.122650 GGATAAATGATGAGGTAGAGGAGAGAG 59.877 44.444 0.00 0.00 0.00 3.20
242 243 6.951198 GGATAAATGATGAGGTAGAGGAGAGA 59.049 42.308 0.00 0.00 0.00 3.10
243 244 6.953520 AGGATAAATGATGAGGTAGAGGAGAG 59.046 42.308 0.00 0.00 0.00 3.20
244 245 6.868826 AGGATAAATGATGAGGTAGAGGAGA 58.131 40.000 0.00 0.00 0.00 3.71
245 246 7.148154 CGTAGGATAAATGATGAGGTAGAGGAG 60.148 44.444 0.00 0.00 0.00 3.69
246 247 6.659668 CGTAGGATAAATGATGAGGTAGAGGA 59.340 42.308 0.00 0.00 0.00 3.71
247 248 6.434652 ACGTAGGATAAATGATGAGGTAGAGG 59.565 42.308 0.00 0.00 0.00 3.69
248 249 7.309177 CACGTAGGATAAATGATGAGGTAGAG 58.691 42.308 0.00 0.00 0.00 2.43
249 250 6.208797 CCACGTAGGATAAATGATGAGGTAGA 59.791 42.308 0.00 0.00 41.22 2.59
250 251 6.390721 CCACGTAGGATAAATGATGAGGTAG 58.609 44.000 0.00 0.00 41.22 3.18
251 252 5.279306 GCCACGTAGGATAAATGATGAGGTA 60.279 44.000 8.04 0.00 41.22 3.08
252 253 4.503296 GCCACGTAGGATAAATGATGAGGT 60.503 45.833 8.04 0.00 41.22 3.85
253 254 3.997021 GCCACGTAGGATAAATGATGAGG 59.003 47.826 8.04 0.00 41.22 3.86
254 255 4.631131 TGCCACGTAGGATAAATGATGAG 58.369 43.478 8.04 0.00 41.22 2.90
255 256 4.681074 TGCCACGTAGGATAAATGATGA 57.319 40.909 8.04 0.00 41.22 2.92
256 257 5.692814 CAATGCCACGTAGGATAAATGATG 58.307 41.667 8.04 0.00 41.22 3.07
257 258 4.216257 GCAATGCCACGTAGGATAAATGAT 59.784 41.667 8.04 0.00 41.22 2.45
258 259 3.563808 GCAATGCCACGTAGGATAAATGA 59.436 43.478 8.04 0.00 41.22 2.57
259 260 3.565482 AGCAATGCCACGTAGGATAAATG 59.435 43.478 0.00 0.00 41.22 2.32
260 261 3.820557 AGCAATGCCACGTAGGATAAAT 58.179 40.909 0.00 0.00 41.22 1.40
261 262 3.275617 AGCAATGCCACGTAGGATAAA 57.724 42.857 0.00 0.00 41.22 1.40
262 263 4.100344 TCTTAGCAATGCCACGTAGGATAA 59.900 41.667 0.00 0.00 41.22 1.75
263 264 3.639561 TCTTAGCAATGCCACGTAGGATA 59.360 43.478 0.00 0.00 41.22 2.59
264 265 2.434336 TCTTAGCAATGCCACGTAGGAT 59.566 45.455 0.00 0.00 41.22 3.24
265 266 1.828595 TCTTAGCAATGCCACGTAGGA 59.171 47.619 0.00 0.00 41.22 2.94
266 267 2.309528 TCTTAGCAATGCCACGTAGG 57.690 50.000 0.00 0.00 41.84 3.18
267 268 5.984233 TTTATCTTAGCAATGCCACGTAG 57.016 39.130 0.00 0.00 0.00 3.51
268 269 5.065474 GGTTTTATCTTAGCAATGCCACGTA 59.935 40.000 0.00 0.00 0.00 3.57
269 270 4.142469 GGTTTTATCTTAGCAATGCCACGT 60.142 41.667 0.00 0.00 0.00 4.49
270 271 4.142491 TGGTTTTATCTTAGCAATGCCACG 60.142 41.667 0.00 0.00 0.00 4.94
271 272 5.323371 TGGTTTTATCTTAGCAATGCCAC 57.677 39.130 0.00 0.00 0.00 5.01
272 273 6.070881 ACAATGGTTTTATCTTAGCAATGCCA 60.071 34.615 0.00 0.00 0.00 4.92
273 274 6.340522 ACAATGGTTTTATCTTAGCAATGCC 58.659 36.000 0.00 0.00 0.00 4.40
274 275 7.973388 TGTACAATGGTTTTATCTTAGCAATGC 59.027 33.333 0.00 0.00 0.00 3.56
277 278 7.973388 GCATGTACAATGGTTTTATCTTAGCAA 59.027 33.333 0.00 0.00 0.00 3.91
278 279 7.416213 GGCATGTACAATGGTTTTATCTTAGCA 60.416 37.037 0.00 0.00 0.00 3.49
279 280 6.918022 GGCATGTACAATGGTTTTATCTTAGC 59.082 38.462 0.00 0.00 0.00 3.09
280 281 7.285401 AGGGCATGTACAATGGTTTTATCTTAG 59.715 37.037 0.00 0.00 0.00 2.18
281 282 7.068103 CAGGGCATGTACAATGGTTTTATCTTA 59.932 37.037 0.00 0.00 0.00 2.10
282 283 5.957774 AGGGCATGTACAATGGTTTTATCTT 59.042 36.000 0.00 0.00 0.00 2.40
283 284 5.360714 CAGGGCATGTACAATGGTTTTATCT 59.639 40.000 0.00 0.00 0.00 1.98
284 285 5.359576 TCAGGGCATGTACAATGGTTTTATC 59.640 40.000 0.00 0.00 0.00 1.75
285 286 5.268387 TCAGGGCATGTACAATGGTTTTAT 58.732 37.500 0.00 0.00 0.00 1.40
286 287 4.667573 TCAGGGCATGTACAATGGTTTTA 58.332 39.130 0.00 0.00 0.00 1.52
287 288 3.505386 TCAGGGCATGTACAATGGTTTT 58.495 40.909 0.00 0.00 0.00 2.43
288 289 3.091545 CTCAGGGCATGTACAATGGTTT 58.908 45.455 0.00 0.00 0.00 3.27
289 290 2.041620 ACTCAGGGCATGTACAATGGTT 59.958 45.455 0.00 0.00 0.00 3.67
290 291 1.635487 ACTCAGGGCATGTACAATGGT 59.365 47.619 0.00 0.00 0.00 3.55
291 292 2.425143 ACTCAGGGCATGTACAATGG 57.575 50.000 0.00 0.00 0.00 3.16
292 293 4.517285 ACTAACTCAGGGCATGTACAATG 58.483 43.478 0.00 0.12 0.00 2.82
293 294 4.225042 TGACTAACTCAGGGCATGTACAAT 59.775 41.667 0.00 0.00 0.00 2.71
294 295 3.580895 TGACTAACTCAGGGCATGTACAA 59.419 43.478 0.00 0.00 0.00 2.41
295 296 3.056107 GTGACTAACTCAGGGCATGTACA 60.056 47.826 0.00 0.00 0.00 2.90
296 297 3.522553 GTGACTAACTCAGGGCATGTAC 58.477 50.000 0.00 0.00 0.00 2.90
297 298 2.165641 CGTGACTAACTCAGGGCATGTA 59.834 50.000 0.00 0.00 32.05 2.29
298 299 1.066858 CGTGACTAACTCAGGGCATGT 60.067 52.381 0.00 0.00 32.05 3.21
299 300 1.645034 CGTGACTAACTCAGGGCATG 58.355 55.000 0.00 0.00 32.05 4.06
300 301 0.108138 GCGTGACTAACTCAGGGCAT 60.108 55.000 0.00 0.00 35.62 4.40
301 302 1.185618 AGCGTGACTAACTCAGGGCA 61.186 55.000 0.00 0.00 35.62 5.36
302 303 0.458716 GAGCGTGACTAACTCAGGGC 60.459 60.000 0.00 0.00 35.62 5.19
303 304 0.888619 TGAGCGTGACTAACTCAGGG 59.111 55.000 0.00 0.00 35.58 4.45
304 305 1.729472 CGTGAGCGTGACTAACTCAGG 60.729 57.143 0.93 3.60 40.91 3.86
305 306 1.607713 CGTGAGCGTGACTAACTCAG 58.392 55.000 0.93 0.00 40.91 3.35
350 351 2.758737 GGGGTCGGTCGATGGTCT 60.759 66.667 0.00 0.00 0.00 3.85
388 389 0.179029 CCGCCGGAGAAATTATGGGT 60.179 55.000 5.05 0.00 0.00 4.51
407 408 2.667199 CGGGTGGGTCGTTTGGAC 60.667 66.667 0.00 0.00 45.31 4.02
408 409 4.629523 GCGGGTGGGTCGTTTGGA 62.630 66.667 0.00 0.00 0.00 3.53
432 433 0.604243 ATTGACCGCGGCTTTGTGTA 60.604 50.000 28.58 2.08 0.00 2.90
435 436 2.332654 GGATTGACCGCGGCTTTGT 61.333 57.895 28.58 4.48 0.00 2.83
479 480 2.044252 CCGAGACCGAGGGGAGAA 60.044 66.667 0.00 0.00 38.22 2.87
507 508 3.056179 ACAGGAAGAGAAGAGCAACTAGC 60.056 47.826 0.00 0.00 46.19 3.42
508 509 4.219507 TGACAGGAAGAGAAGAGCAACTAG 59.780 45.833 0.00 0.00 0.00 2.57
509 510 4.021894 GTGACAGGAAGAGAAGAGCAACTA 60.022 45.833 0.00 0.00 0.00 2.24
510 511 2.968574 TGACAGGAAGAGAAGAGCAACT 59.031 45.455 0.00 0.00 0.00 3.16
511 512 3.063485 GTGACAGGAAGAGAAGAGCAAC 58.937 50.000 0.00 0.00 0.00 4.17
512 513 2.288457 CGTGACAGGAAGAGAAGAGCAA 60.288 50.000 0.00 0.00 0.00 3.91
513 514 1.270826 CGTGACAGGAAGAGAAGAGCA 59.729 52.381 0.00 0.00 0.00 4.26
514 515 1.989430 CGTGACAGGAAGAGAAGAGC 58.011 55.000 0.00 0.00 0.00 4.09
515 516 1.403514 GGCGTGACAGGAAGAGAAGAG 60.404 57.143 0.00 0.00 0.00 2.85
516 517 0.603569 GGCGTGACAGGAAGAGAAGA 59.396 55.000 0.00 0.00 0.00 2.87
517 518 0.390472 GGGCGTGACAGGAAGAGAAG 60.390 60.000 0.00 0.00 0.00 2.85
518 519 0.832135 AGGGCGTGACAGGAAGAGAA 60.832 55.000 0.00 0.00 0.00 2.87
519 520 1.228894 AGGGCGTGACAGGAAGAGA 60.229 57.895 0.00 0.00 0.00 3.10
520 521 1.216710 GAGGGCGTGACAGGAAGAG 59.783 63.158 0.00 0.00 0.00 2.85
521 522 2.636412 CGAGGGCGTGACAGGAAGA 61.636 63.158 0.00 0.00 0.00 2.87
522 523 2.125912 CGAGGGCGTGACAGGAAG 60.126 66.667 0.00 0.00 0.00 3.46
523 524 4.373116 GCGAGGGCGTGACAGGAA 62.373 66.667 0.00 0.00 40.36 3.36
562 563 6.927294 AAAACGAGAGAAAACAGAGATGTT 57.073 33.333 0.00 0.00 0.00 2.71
599 610 0.325671 ACCAGATGTCTCCGGTCCAT 60.326 55.000 0.00 1.78 0.00 3.41
689 700 1.068055 CATGGTCTTTGCAGCCTTGTC 60.068 52.381 0.00 0.00 0.00 3.18
690 701 0.963962 CATGGTCTTTGCAGCCTTGT 59.036 50.000 0.00 0.00 0.00 3.16
713 724 2.268280 CTGTCTGGCTGGCTCTGG 59.732 66.667 2.00 0.00 0.00 3.86
752 767 1.447140 GTATGTGGCGAGCGGTTCA 60.447 57.895 0.00 0.00 0.00 3.18
753 768 1.153628 AGTATGTGGCGAGCGGTTC 60.154 57.895 0.00 0.00 0.00 3.62
754 769 1.447838 CAGTATGTGGCGAGCGGTT 60.448 57.895 0.00 0.00 0.00 4.44
755 770 1.884075 TTCAGTATGTGGCGAGCGGT 61.884 55.000 0.00 0.00 37.40 5.68
756 771 0.739462 TTTCAGTATGTGGCGAGCGG 60.739 55.000 0.00 0.00 37.40 5.52
757 772 0.647410 CTTTCAGTATGTGGCGAGCG 59.353 55.000 0.00 0.00 37.40 5.03
758 773 1.726853 ACTTTCAGTATGTGGCGAGC 58.273 50.000 0.00 0.00 37.40 5.03
759 774 5.727791 GCAAATACTTTCAGTATGTGGCGAG 60.728 44.000 13.63 0.00 43.46 5.03
760 775 4.094294 GCAAATACTTTCAGTATGTGGCGA 59.906 41.667 13.63 0.00 43.46 5.54
761 776 4.094887 AGCAAATACTTTCAGTATGTGGCG 59.905 41.667 13.63 0.00 43.46 5.69
762 777 5.567138 AGCAAATACTTTCAGTATGTGGC 57.433 39.130 13.63 9.90 43.46 5.01
763 778 6.324819 CCAAGCAAATACTTTCAGTATGTGG 58.675 40.000 13.63 6.42 43.46 4.17
764 779 5.801947 GCCAAGCAAATACTTTCAGTATGTG 59.198 40.000 9.05 9.05 45.16 3.21
765 780 5.711976 AGCCAAGCAAATACTTTCAGTATGT 59.288 36.000 0.00 0.00 40.32 2.29
766 781 6.199937 AGCCAAGCAAATACTTTCAGTATG 57.800 37.500 0.00 0.00 40.32 2.39
767 782 7.938140 TTAGCCAAGCAAATACTTTCAGTAT 57.062 32.000 0.00 0.00 42.86 2.12
794 809 9.286946 CTAGTAGTTCTTTATCGTTTGATTCGT 57.713 33.333 0.00 0.00 35.99 3.85
813 828 8.784043 CCTAATGAAAAAGTTGTTGCTAGTAGT 58.216 33.333 0.00 0.00 0.00 2.73
814 829 7.750903 GCCTAATGAAAAAGTTGTTGCTAGTAG 59.249 37.037 0.00 0.00 0.00 2.57
815 830 7.447238 AGCCTAATGAAAAAGTTGTTGCTAGTA 59.553 33.333 0.00 0.00 0.00 1.82
833 848 3.262420 AGTCGTTGCTTGTAGCCTAATG 58.738 45.455 0.00 0.00 41.51 1.90
834 849 3.611766 AGTCGTTGCTTGTAGCCTAAT 57.388 42.857 0.00 0.00 41.51 1.73
837 852 1.402456 CGTAGTCGTTGCTTGTAGCCT 60.402 52.381 0.00 0.00 41.51 4.58
838 853 0.989890 CGTAGTCGTTGCTTGTAGCC 59.010 55.000 0.00 0.00 41.51 3.93
912 942 0.243095 GGTCTACTTATAGGCGGGCG 59.757 60.000 0.00 0.00 33.45 6.13
983 1013 0.615331 CATGTACAGGAGCCACAGGT 59.385 55.000 0.00 0.00 0.00 4.00
2025 2058 2.666895 CGTAGATGCTAGATGCGAGGTG 60.667 54.545 0.00 0.00 46.63 4.00
2105 2144 1.461559 AACCGAACGAACCAACCAAA 58.538 45.000 0.00 0.00 0.00 3.28
2106 2145 2.322355 TAACCGAACGAACCAACCAA 57.678 45.000 0.00 0.00 0.00 3.67
2107 2146 2.322355 TTAACCGAACGAACCAACCA 57.678 45.000 0.00 0.00 0.00 3.67
2108 2147 3.557508 CAATTAACCGAACGAACCAACC 58.442 45.455 0.00 0.00 0.00 3.77
2178 2217 0.610174 AGACGAGCCAGAGAAATGCA 59.390 50.000 0.00 0.00 0.00 3.96
2185 2224 0.170116 GACACAGAGACGAGCCAGAG 59.830 60.000 0.00 0.00 0.00 3.35
2193 2232 0.387367 CGTTCCAGGACACAGAGACG 60.387 60.000 0.00 0.00 0.00 4.18
2254 2293 4.768448 TGTACTTTCCGTCTCAGATGGTAA 59.232 41.667 13.00 8.73 39.55 2.85
2255 2294 4.338012 TGTACTTTCCGTCTCAGATGGTA 58.662 43.478 13.00 0.00 39.55 3.25
2256 2295 3.162666 TGTACTTTCCGTCTCAGATGGT 58.837 45.455 13.00 0.00 39.55 3.55
2257 2296 3.193691 ACTGTACTTTCCGTCTCAGATGG 59.806 47.826 6.58 6.58 39.89 3.51
2258 2297 4.442375 ACTGTACTTTCCGTCTCAGATG 57.558 45.455 0.00 0.00 34.23 2.90
2289 2328 7.282675 GCTAGTCCTAGTAACTGATTCACAGTA 59.717 40.741 0.00 0.00 44.96 2.74
2291 2330 6.460399 GGCTAGTCCTAGTAACTGATTCACAG 60.460 46.154 5.50 0.00 42.12 3.66
2293 2332 5.595133 AGGCTAGTCCTAGTAACTGATTCAC 59.405 44.000 4.13 0.00 45.41 3.18
2294 2333 5.767670 AGGCTAGTCCTAGTAACTGATTCA 58.232 41.667 4.13 0.00 45.41 2.57
2332 2374 4.282449 TGCATGTACAGTGTACCAAGTACT 59.718 41.667 26.66 0.00 39.49 2.73
2367 2409 5.153513 CCGTTTGATAATCACAACTGGTTG 58.846 41.667 11.35 11.35 45.58 3.77
2399 2441 0.179000 TGTGTGCGGCCCAAAATTTT 59.821 45.000 0.00 0.00 0.00 1.82
2421 2463 1.825474 CCCAACTCTAGCGGAAGAGAA 59.175 52.381 17.29 0.00 44.93 2.87
2454 2504 8.172352 AGTTGCCAATTGTAAATGTAGTACAA 57.828 30.769 7.16 0.00 43.59 2.41
2458 2511 6.127730 GCCTAGTTGCCAATTGTAAATGTAGT 60.128 38.462 4.43 0.00 0.00 2.73
2459 2512 6.265577 GCCTAGTTGCCAATTGTAAATGTAG 58.734 40.000 4.43 4.40 0.00 2.74
2460 2513 5.163703 CGCCTAGTTGCCAATTGTAAATGTA 60.164 40.000 4.43 0.00 0.00 2.29
2461 2514 4.380444 CGCCTAGTTGCCAATTGTAAATGT 60.380 41.667 4.43 0.00 0.00 2.71
2565 2626 0.171903 GGTGCCATAGTTGCTGCTTG 59.828 55.000 0.00 0.00 0.00 4.01
2567 2628 0.251297 TTGGTGCCATAGTTGCTGCT 60.251 50.000 0.00 0.00 0.00 4.24
2578 2639 1.261480 AAACCGCATTATTGGTGCCA 58.739 45.000 0.00 0.00 38.82 4.92
2610 2678 9.912634 ACAAAATTGTTTCAAATCGACAGATAT 57.087 25.926 0.00 0.00 38.47 1.63
2638 2706 2.697654 CTTCTTCTTCAGCTCCACCAG 58.302 52.381 0.00 0.00 0.00 4.00
2639 2707 1.271054 GCTTCTTCTTCAGCTCCACCA 60.271 52.381 0.00 0.00 32.87 4.17
2641 2709 2.075338 CTGCTTCTTCTTCAGCTCCAC 58.925 52.381 0.00 0.00 36.92 4.02
2642 2710 1.610102 GCTGCTTCTTCTTCAGCTCCA 60.610 52.381 6.24 0.00 46.93 3.86
2679 3113 0.321653 ATCGCGTCTTTTTCCTGGCT 60.322 50.000 5.77 0.00 0.00 4.75
2712 3146 3.370840 TTGAACTCCCCATGGAATCTG 57.629 47.619 15.22 0.00 41.17 2.90
2749 3183 5.308497 TCCAGTTTATATATTCCGCCCTTCA 59.692 40.000 0.00 0.00 0.00 3.02
2757 3191 8.990163 TCCCTTTTGTCCAGTTTATATATTCC 57.010 34.615 0.00 0.00 0.00 3.01
2830 3274 1.541310 TTGAGGTCCCTACACGGCTG 61.541 60.000 0.00 0.00 0.00 4.85
2831 3275 0.617820 ATTGAGGTCCCTACACGGCT 60.618 55.000 0.00 0.00 0.00 5.52
2864 3313 1.521411 CTTCGTGAGCGTACGTAGTG 58.479 55.000 17.90 3.85 44.06 2.74
2865 3314 0.179205 GCTTCGTGAGCGTACGTAGT 60.179 55.000 17.90 1.53 43.56 2.73
2896 3347 5.889289 TGCCAAAACCCCAGATTATTACTAC 59.111 40.000 0.00 0.00 0.00 2.73
2897 3348 6.080969 TGCCAAAACCCCAGATTATTACTA 57.919 37.500 0.00 0.00 0.00 1.82
2898 3349 4.941713 TGCCAAAACCCCAGATTATTACT 58.058 39.130 0.00 0.00 0.00 2.24
2899 3350 5.669164 TTGCCAAAACCCCAGATTATTAC 57.331 39.130 0.00 0.00 0.00 1.89
2900 3351 6.688073 TTTTGCCAAAACCCCAGATTATTA 57.312 33.333 0.00 0.00 0.00 0.98
2901 3352 5.574970 TTTTGCCAAAACCCCAGATTATT 57.425 34.783 0.00 0.00 0.00 1.40
2902 3353 5.777526 ATTTTGCCAAAACCCCAGATTAT 57.222 34.783 4.45 0.00 32.37 1.28
2903 3354 6.688073 TTATTTTGCCAAAACCCCAGATTA 57.312 33.333 4.45 0.00 32.37 1.75
2904 3355 5.574970 TTATTTTGCCAAAACCCCAGATT 57.425 34.783 4.45 0.00 32.37 2.40
2905 3356 5.574970 TTTATTTTGCCAAAACCCCAGAT 57.425 34.783 4.45 0.00 32.37 2.90
2906 3357 5.104318 AGTTTTATTTTGCCAAAACCCCAGA 60.104 36.000 4.45 0.00 42.80 3.86
2907 3358 5.008514 CAGTTTTATTTTGCCAAAACCCCAG 59.991 40.000 4.45 0.00 42.80 4.45
2908 3359 4.884164 CAGTTTTATTTTGCCAAAACCCCA 59.116 37.500 4.45 0.00 42.80 4.96
2909 3360 4.277174 CCAGTTTTATTTTGCCAAAACCCC 59.723 41.667 4.45 0.00 42.80 4.95
2910 3361 4.277174 CCCAGTTTTATTTTGCCAAAACCC 59.723 41.667 4.45 0.00 42.80 4.11
2911 3362 5.126779 TCCCAGTTTTATTTTGCCAAAACC 58.873 37.500 4.45 0.00 42.80 3.27
2912 3363 6.685527 TTCCCAGTTTTATTTTGCCAAAAC 57.314 33.333 4.45 2.51 42.36 2.43
2913 3364 6.238869 GCATTCCCAGTTTTATTTTGCCAAAA 60.239 34.615 4.87 4.87 34.41 2.44
2914 3365 5.240403 GCATTCCCAGTTTTATTTTGCCAAA 59.760 36.000 0.00 0.00 0.00 3.28
2915 3366 4.759183 GCATTCCCAGTTTTATTTTGCCAA 59.241 37.500 0.00 0.00 0.00 4.52
2916 3367 4.041444 AGCATTCCCAGTTTTATTTTGCCA 59.959 37.500 0.00 0.00 0.00 4.92
2917 3368 4.392754 CAGCATTCCCAGTTTTATTTTGCC 59.607 41.667 0.00 0.00 0.00 4.52
2918 3369 4.392754 CCAGCATTCCCAGTTTTATTTTGC 59.607 41.667 0.00 0.00 0.00 3.68
2919 3370 5.550290 ACCAGCATTCCCAGTTTTATTTTG 58.450 37.500 0.00 0.00 0.00 2.44
2920 3371 5.306678 TGACCAGCATTCCCAGTTTTATTTT 59.693 36.000 0.00 0.00 0.00 1.82
2921 3372 4.837860 TGACCAGCATTCCCAGTTTTATTT 59.162 37.500 0.00 0.00 0.00 1.40
2922 3373 4.415596 TGACCAGCATTCCCAGTTTTATT 58.584 39.130 0.00 0.00 0.00 1.40
2923 3374 4.019174 CTGACCAGCATTCCCAGTTTTAT 58.981 43.478 0.00 0.00 0.00 1.40
2924 3375 3.181434 ACTGACCAGCATTCCCAGTTTTA 60.181 43.478 0.00 0.00 34.79 1.52
2925 3376 2.242043 CTGACCAGCATTCCCAGTTTT 58.758 47.619 0.00 0.00 0.00 2.43
2926 3377 1.145738 ACTGACCAGCATTCCCAGTTT 59.854 47.619 0.00 0.00 34.79 2.66
2927 3378 0.773644 ACTGACCAGCATTCCCAGTT 59.226 50.000 0.00 0.00 34.79 3.16
2928 3379 0.037303 CACTGACCAGCATTCCCAGT 59.963 55.000 0.00 0.00 38.48 4.00
2929 3380 0.679002 CCACTGACCAGCATTCCCAG 60.679 60.000 0.00 0.00 0.00 4.45
2930 3381 1.379916 CCACTGACCAGCATTCCCA 59.620 57.895 0.00 0.00 0.00 4.37
2931 3382 0.678048 GACCACTGACCAGCATTCCC 60.678 60.000 0.00 0.00 0.00 3.97
2932 3383 0.036732 TGACCACTGACCAGCATTCC 59.963 55.000 0.00 0.00 0.00 3.01
2933 3384 1.160137 GTGACCACTGACCAGCATTC 58.840 55.000 0.00 0.00 0.00 2.67
2934 3385 0.473755 TGTGACCACTGACCAGCATT 59.526 50.000 1.62 0.00 0.00 3.56
2935 3386 0.473755 TTGTGACCACTGACCAGCAT 59.526 50.000 1.62 0.00 0.00 3.79
2936 3387 0.463654 GTTGTGACCACTGACCAGCA 60.464 55.000 1.62 0.00 0.00 4.41
2937 3388 1.498865 CGTTGTGACCACTGACCAGC 61.499 60.000 1.62 0.00 0.00 4.85
2938 3389 0.104120 TCGTTGTGACCACTGACCAG 59.896 55.000 1.62 0.00 0.00 4.00
2939 3390 0.179094 GTCGTTGTGACCACTGACCA 60.179 55.000 1.62 0.00 42.04 4.02
2940 3391 2.601562 GTCGTTGTGACCACTGACC 58.398 57.895 1.62 0.00 42.04 4.02
2945 3396 6.202132 TTCACATTGTGTCGTTGTGACCAC 62.202 45.833 16.06 0.00 46.78 4.16
2946 3397 4.175390 TTCACATTGTGTCGTTGTGACCA 61.175 43.478 16.06 0.00 46.78 4.02
2947 3398 2.353269 TTCACATTGTGTCGTTGTGACC 59.647 45.455 16.06 0.00 46.78 4.02
2948 3399 3.666883 TTCACATTGTGTCGTTGTGAC 57.333 42.857 16.06 0.00 46.78 3.67
2949 3400 3.064682 CCTTTCACATTGTGTCGTTGTGA 59.935 43.478 16.06 1.11 45.81 3.58
2950 3401 3.181501 ACCTTTCACATTGTGTCGTTGTG 60.182 43.478 16.06 0.00 41.60 3.33
2951 3402 3.013921 ACCTTTCACATTGTGTCGTTGT 58.986 40.909 16.06 6.36 34.79 3.32
2952 3403 3.691049 ACCTTTCACATTGTGTCGTTG 57.309 42.857 16.06 5.81 34.79 4.10
2953 3404 6.183360 ACAATAACCTTTCACATTGTGTCGTT 60.183 34.615 16.06 14.57 39.49 3.85
2954 3405 5.298276 ACAATAACCTTTCACATTGTGTCGT 59.702 36.000 16.06 5.98 39.49 4.34
2955 3406 5.624900 CACAATAACCTTTCACATTGTGTCG 59.375 40.000 16.06 6.29 46.72 4.35
2956 3407 6.991485 CACAATAACCTTTCACATTGTGTC 57.009 37.500 16.06 0.00 46.72 3.67
2959 3410 4.262420 GGGCACAATAACCTTTCACATTGT 60.262 41.667 0.00 0.00 41.14 2.71
2960 3411 4.244862 GGGCACAATAACCTTTCACATTG 58.755 43.478 0.00 0.00 35.10 2.82
2961 3412 3.900601 TGGGCACAATAACCTTTCACATT 59.099 39.130 0.00 0.00 0.00 2.71
2962 3413 3.505386 TGGGCACAATAACCTTTCACAT 58.495 40.909 0.00 0.00 0.00 3.21
2963 3414 2.950781 TGGGCACAATAACCTTTCACA 58.049 42.857 0.00 0.00 0.00 3.58
2964 3415 4.461081 TGTATGGGCACAATAACCTTTCAC 59.539 41.667 0.00 0.00 0.00 3.18
2965 3416 4.461081 GTGTATGGGCACAATAACCTTTCA 59.539 41.667 0.00 0.00 39.07 2.69
2966 3417 4.461081 TGTGTATGGGCACAATAACCTTTC 59.539 41.667 0.00 0.00 45.17 2.62
2967 3418 4.411927 TGTGTATGGGCACAATAACCTTT 58.588 39.130 0.00 0.00 45.17 3.11
2968 3419 4.040936 TGTGTATGGGCACAATAACCTT 57.959 40.909 0.00 0.00 45.17 3.50
2969 3420 3.730215 TGTGTATGGGCACAATAACCT 57.270 42.857 0.00 0.00 45.17 3.50
2976 3427 0.179043 ACGTTGTGTGTATGGGCACA 60.179 50.000 0.00 0.00 45.85 4.57
2977 3428 0.948678 AACGTTGTGTGTATGGGCAC 59.051 50.000 0.00 0.00 39.65 5.01
2978 3429 1.681538 AAACGTTGTGTGTATGGGCA 58.318 45.000 0.00 0.00 0.00 5.36
2979 3430 2.785713 AAAACGTTGTGTGTATGGGC 57.214 45.000 0.00 0.00 0.00 5.36
2980 3431 4.039032 GTCAAAAACGTTGTGTGTATGGG 58.961 43.478 0.00 0.00 0.00 4.00
2981 3432 4.039032 GGTCAAAAACGTTGTGTGTATGG 58.961 43.478 0.00 0.00 0.00 2.74
2982 3433 4.663166 TGGTCAAAAACGTTGTGTGTATG 58.337 39.130 0.00 0.00 0.00 2.39
2983 3434 4.966965 TGGTCAAAAACGTTGTGTGTAT 57.033 36.364 0.00 0.00 0.00 2.29
2984 3435 4.474113 GTTGGTCAAAAACGTTGTGTGTA 58.526 39.130 0.00 0.00 0.00 2.90
2985 3436 3.310246 GTTGGTCAAAAACGTTGTGTGT 58.690 40.909 0.00 0.00 0.00 3.72
2986 3437 2.339988 CGTTGGTCAAAAACGTTGTGTG 59.660 45.455 0.00 0.22 44.07 3.82
2987 3438 2.586900 CGTTGGTCAAAAACGTTGTGT 58.413 42.857 0.00 0.00 44.07 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.