>input_sequence_63171
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------------------------------------------------------------------------ATGCGCGC
TAGCCTCGCCTCCTACGCGCAAGACCACGCCACGGCCACCGCCATGCCTGCCTTGGACGTCATGCCGGAGAAGGCCCACC
AGCCCGCCATGTCGCCGTCGCACCACGGGCTTGGGTGGGACGCCAGCGGCGCCCCCACCCCCATGCACAAGAGGCTGGAC
GGCAAGGTGGCCATTGTCACCGGCGGCGCGCGGGGCATCGGGGAGGCCATCGTCAGGCTCTTCGTCAAGCACGGCGCCAA
GGTGGTGATCGCGGACATCGACGACGCCGCCGGCGAGGCGCTGGCAGCCTCGCTGGGCCCGCACGTCGGCTTCGTGCGCT
GCGACGTGTCGGTGGAGGAGGACGTGGAGCGCGCCGTCGACCGGGCGGTGTCGCGCTACGGCCGCCTCGACGTCTTCTGC
AACAACGCCGGGGTGCTGGGCCGGCAGACCAGCGCCGCCAAGAGCATCCTCACGTTCGACGCCGGCGAGTTCGACCGCGT
GCTCCGCGTCAACGCGCTGGGCACCGCGCTCGGCATGAAGCACGCCGGGCGCGCCATGATGGCCCGTCGCTACGGCAGCA
TCGTCTCCATCGCCAGCGTGGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCATACACCGCCTCCAAGCACGCCATCGTG
GGGCTCACCAAGAACGCCGCCTGCGAGCTCGGCGCGCACGGCATCCGCGTCAACTGCGTCTCGCCCTTCGGCGTCGCCAC
CCCAATGCTCATCAACGCGTGGCGCCAGGGCCACGACGCGTCAGCCGCCGACGACGCCGACGCCGACATCGGCCTGGAGG
TGGCCGTGCCGAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTGAGGAGCCTCGCCACGCTCAAGGGGTCGACGCTG
AGGCCCAGGGACATCGCCGAGGCGGTGCTCTTCCTGGCCAGCGACGACTCGAGATACGTGTCCGGCCACAACCTCGTGGT
GGACGGCGGCGTCACCACCTCAAGAAACTTGATCGGGCTGTGA-------------------------------------
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>chr4B_1_TraesCS4B01G188800
CGTCCACACTGTTGAAATCCGTCCTAGTTGTTGAGGGCATGTACAATGGTTGATAAATCGGTCTTATCTTAAATCTTGCA
TGTAATTTAGAGATAACAAAAAAACATGTCTACAATGGATCATCTCTTAGCCTTATCTTCAATAACTAGTTATTCCTAAA
AATATGGTGAGACATATTGTGCTAAGAGATCATCTCTTGCCTTCTCTTAATTAAGAGAAGACAAGCCTTCTCTTATGATT
TCTCTCTCCTCTACCTCATCATTTATCCTACGTGGCATTGCTAAGATAAAACCATTGTACATGCCCTGAGTTAGTCACGC
TCACGCATCGGCATCAGCTCAAGACAGCCAAGACCATCGACCGACCCCACCCACGTACGGTCGTCGGAACCCATAATTTC
TCCGGCGGTCCAAACGACCCACCCGCCCCCCATACACAAAGCCGCGGTCAATCCGATCCGTCCGCCCAACCGTGTGCGGT
TCTCCCCTCGGTCTCGGCCTTGCCTTTGCTAGTTGCTCTTCTCTTCCTGTCACGCCCTCGCGTTCGCTTCTAGGAATGCG
CTA---------ACATCTCTGTTTTCTCTCGT-TTTTTTTTTCTCCCTCATGGACCGGAGACATCTGGTCCGGTCAGAGA
CAGTGTCGCTCTCCGTGCTGATCCGCCGGTACTGAATAATCTCACACCAGATCGAGTTAGACAAGGCTGCAAAGACCATG
ACACCAGAGCCAGCCAGACAGCCATGTACA----AGCACCCTCTGCTGAACCGCTCGCCACATACTGAAAGTATTTGCTT
GGCTAATCACGAATCAAACGATAAAGAACTACTAGCAACAACTTTTTCATTAGGCTA----------CAAGCAACGACTA
CGTACGCGTTGAATTACGTGTAGTCCCGCGAGAGCTGGCCGTACAACCA----GTCGCCC-CGCCCGCCTATAAGTAGAC
CCCGCCCTGCACTCCCCTGCATAAACCAGCAAGCTTCACACACTTCCTTCCTACC---TGTGGCTCCTGTACATGCGCGC
TAGCCTCGCCTCCTACGCGCAAGACCACGCCACGGCCACCGCCATGCCTGCCTTGGACGTCATGCCGGAGAAGGCCCACC
AGCCCGCCATGTCGCCGTCGCACCACGGGCTTGGGTGGGACGCCAGCGGCGCCCCCACCCCCATGCACAAGAGGCTGGAC
GGCAAGGTGGCCATTGTCACCGGCGGCGCGCGGGGCATCGGGGAGGCCATCGTCAGGCTCTTCGTCAAGCACGGCGCCAA
GGTGGTGATCGCGGACATCGACGACGCCGCCGGCGAGGCGCTGGCAGCCTCGCTGGGCCCGCACGTCGGCTTCGTGCGCT
GCGACGTGTCGGTGGAGGAGGACGTGGAGCGCGCCGTCGACCGGGCGGTGTCGCGCTACGGCCGCCTCGACGTCTTCTGC
AACAACGCCGGGGTGCTGGGCCGGCAGACCAGCGCCGCCAAGAGCATCCTCACGTTCGACGCCGGCGAGTTCGACCGCGT
GCTCCGCGTCAACGCGCTGGGCACCGCGCTCGGCATGAAGCACGCCGGGCGCGCCATGATGGCCCGTCGCTACGGCAGCA
TCGTCTCCATCGCCAGCGTGGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCATACACCGCCTCCAAGCACGCCATCGTG
GGGCTCACCAAGAACGCCGCCTGCGAGCTCGGCGCGCACGGCATCCGCGTCAACTGCGTCTCGCCCTTCGGCGTCGCCAC
CCCAATGCTCATCAACGCGTGGCGCCAGGGCCACGACGCGTCAGCCGCCGACGACGCCGACGCCGACATCGGCCTGGAGG
TGGCCGTGCCGAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTGAGGAGCCTCGCCACGCTCAAGGGGTCGACGCTG
AGGCCCAGGGACATCGCCGAGGCGGTGCTCTTCCTGGCCAGCGACGACTCGAGATACGTGTCCGGCCACAACCTCGTGGT
GGACGGCGGCGTCACCACCTCAAGAAACTTGATCGGGCTGTGAAAAATCACATGACCCACCTCGCATCTAGCATCTAC--
----GTAGATCAGTAGGAGGAACAAAGATGATTGTTTAGTCTGCAATAACTGTACTCAAGTTCTTTGGTTGGTTCGTTCG
GTTAATTGGTTGATTGATTCAGTGTGTTATTCGTCCGAGCATTGTTGCTTTCGTGTTGCATTTCTCTGGCTCGTCTCTGT
GTCCTGGAACGCTCCAATCGTTTGGCCTCTGGCTAGCAGCCTAGCAGATACGTTACCATCTGAGACGGAAAGTACAGTAA
GTACTCCTACTGTGAATCAGTT---ACTAGGACTAGCCTAGCTTGCAGCCTTTAGTACTTGGTACACTGTACATGCATGT
ACTTTTATCAACCAGTTGTGATTATCAAACGGGCCACTGGAAAATTTTGGGCCGCACACACAT--------TCTCTTCCG
CTAGAGTTGGGATGGTTGATAGTT---TGTACTACATTTACAATTGGCAACTAGGCGACGGGTAGGCTGGTTCCCAGGGT
GCGATTTATCTGTAGATTTGACATAGTTGCTAG------T--TTGTATATGCCCATTGGCGAGCACAAGCAGCAACTAT-
------GGCACCAATAATGCGGTTTTCCCGAGCAAATATATCTGTCGATTTGAAACAATTTTGTGCTGGT----------
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------------------------------------GGAGCTGAAGAAGAAGCAGCTGCGTGCGGGTTTCCGAGCCAGGA
AAAAGACGCGATACAGTTCGTAGGACAGATTCCATGGGGAGTTCAAAATGGACCGAAAAGATTGAAGGGCGGAATAT---
-ATAAACTGGACAAAAGGGATGGCTGGCCTAAAAGTTGAATACAGCCACGTC------TGCGTTCCAGCAGCCCAGCC--
---GTGTAGGGACCTCAATGCGCATTACGCAACACTACGTA--CGCTCACGAAGCTCACCGCATCGGTAGTAATAATCTG
GGGTTTTGGCAAAATAAAACTGGGAATGCTGGTCAGTGGTCACAACGACACAATGTGAAAGGTTATTGTGCCCATACACA
CAACGTTTTTGACCAACGACA
>chr4D_1
CGTCCACACTGTTGAAATCCGTCCTAGTGGT-------------------------------------------------
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------------------------------------------------------------------TGAGTTAGTCACGC
TCACGCATCGGCATCAGCTCAAGACAGCCAGGACCATCCACCGACCCCACCCACGTACGGTCGTCGGAGCCCATAATTTC
TCCGGCGCCGGGCGG----TCCA---ACCCCAAACCCGAAGCCGCGGTCAATCCGATCCGTCCGCACAACCGTGTGCGGC
TCTCCCCTCG--------------------------------------------------CGTTCGCTTCTAGGAATGCG
CTGGCGTTGGCGACATCTCTGTTTTCTCTCGGG-TTTTTTTTCTCCCTCGTGGACCGGAGACATCTAGTCCGGTCAGAGA
CAGTGTCGCTCTCCATGCTGATCCGCCTGTACTGAATAATCTCACACCAGATCGAGTTAACCAAGGCTGCAAAGACCATG
ACATCAGAGCCAGCCA--------TGTACA----AGCACCCTCTAC----------------TACTGAAAGTATTCGCTT
GGCTAATCGCGAACCAACCGATAAAGA---ACTAGCAACAACTTTTTTCTTTTAGGCCACACACAAGCAAGCAACAACTA
CGTACGCGTTGAATTACGTGTAGTCCCGC--GAGCTGGCCGTACAACCAACCAGTCGCCC-GGCCCTCCTATAAGTAGCC
CCCGCCCTGCAGTCCCCTGCATAAACCAGCAAGCTTCACACACTTCCTTTCTTCC---TGTGGCTCCTGTACATGCGCGC
TAGCCTCTCCTCCTACGCGCAAGACCTCGCCACGGCCACCGCCATGCCTGCCTTGGACGTCATGCCGGAGAAGGCCCACC
AGCCCGCCATGTCGCCGTCGCACCACGGCCACGGGTGGGACGCCAGCGGCGCCCCCACCCCCATGCACAAGAGGCTGGAC
GGCAAGGTGGCCATCGTCACCGGCGGCGCGCGGGGCATCGGGGAGGCCATCGTCAGGCTCTTCGTCAAGCACGGCGCCAA
AGTGGTGATCGCGGACATCGACGACGCCGCCGGCGAGGCGCTGGCGGCCTCGCTGGGCCCGCACGTCGGCTTCGTGCGCT
GCGACGTGTCGGTGGAGGAGGACGTGGAGCGCGCCGTCGACCGCGCGGTGTCGCGCTACGGGCGGCTCGACGTCTTCTGC
AACAACGCCGGGGTGCTGGGCCGGCAGACCAGCGCCGCCAAGAGCATCCTCACGTTCGACGCCGGCGAGTTCGACCGCGT
GCTCCGCGTCAACGCGCTGGGCACCGCGCTGGGCATGAAGCACGCCGGGCGCGCCATGATGGCCCGCCGCTACGGCAGCA
TCATCTCCATCGCCAGCGTCGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCCTACACCGCCTCCAAGCACGCCATCGTG
GGGCTCACCAAGAACGCCGCCTGCGAGCTGGGCGCGCACGGCATCCGCGTCAACTGCGTCTCGCCCTTCGGCGTCGCCAC
CCCAATGCTCATCAACGCGTGGCGCCAGGGCCACGACGCGTCCGCCGCCGACGACGCCGACGCCGACATCGGCCTGGACG
TGGCCGCGCCGAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTGAGGAGCCTCGCCACGCTCAAGGGGTCGACGCTG
AGGCCCAGGGACATCGCCGAGGCGGTGCTCTTCCTGGCCAGCGACGACTCGAGATACGTCTCCGGCCACAACCTCGTGGT
GGACGGCGGCGTCACCACCTCAAGAAACTTGATCGGGCTGTGAAAAAACACATGACCGACCTCGCATCTAGCATCTAC--
----GTAGATCAGTAGGAGGAACAAAGATGATTGTTTAGTCTGCAATAACTGCACTCAAGTTC----GTTCGTTCGTTCG
GTTAATTGGTTGATTGATTCAGTGTGTTATTCGTCCGAGCATTGTTGCTTTCGTGTCGCATTTTTCTGGCTTGTCTCTGT
GTCCTGGAACGCTCCAATCGTT-------TGGCTAGCAGCCTAGCAGATACG-----ATCTGAGATGGAAAGTACTGTGA
ATCAGT---------------------TAGCACTAGCCTAGCTTGCAGCCTTTGGTACTTGGTGCACTGTACATGCATGT
ACTTTTATGAACCAGTTGTGATTATCAAACGGGCCACTGGGAAATTTTGGGCCGCACACACGCT------CTCTCTTCCG
CTAGAGTGGGGATGGTTGATAGTAGTTTGTG---CATTTACAATTGGCAACTAGGCGACGGGTAAGCTGGTTCCCAGGGT
GCGATCTATCTGTAGATTTGACATACTAGTAGTAGCAGCTAGTTTTATATGCCCATTGGCGAGCAGAGGCAGCAAGGAGG
GTAG-------CAATAATGCGG-TTTCCCGAGCAAATCTATCTGTCGATT-GAAACAATTTTGAGTAGTAGAGTGC----
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--------------------------------------AGCGGAAGAAGCAGCAGCTGCGTGCCGGTTTCCGTGCCAGGA
AAAAGACGCGATACAGTTCGTAGGAGAGATTCCATGGGGAGTTCAAAATGGACCGAAAAGATCGAAGGGCAGAATATA--
TATAAACTGGACAAAAGGGATGGCTGGCCTAAAAGTTGAATGCAGC----------------------------------
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>chr4A_307
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------------------------------------------------------------------TGAGTTAGTCACGC
TCACGCATCGGCATCGCCTCAAGACAG----------CCACCGACCCCACCCACGTACGGTCGTCGGAGCCCATCATTTC
TCCGGCGCCGGGCGGGCGGTCCA---CCCCCAAACCCGAAGCCGCGGTCAATCTGATCCGTCCGCCCAACCGTGTGCGCC
TCTCCCCTCGGTCTCGGCCTC------------------------CCTGTCGCGCCCTCGCGTTCGCTTCTACGAATGCG
CTGGCGTTGGCGACGTCTCTGTTTTCTCTCGGGTTTTTTTTTCTCCCTCGTGGACCGGAGACATCTGGTCCGGTCAGAGG
CAGTGTCGCTCTCCGCGCTGATCCGCCGGTACTGAATAATCTCACACCAGATCGAGTTAACCAAGGCTGCAAAGACCATG
ACATCAGAGCCAGCCAGACAGCCATGTACATCAGAGCACCCTCTAC----------------TACTGAAAGTATTTGCTT
GGCTAATCGCGAATCAAACGATAAAGA---AGTAGCAACAACTTTTTTCTTTTAGGCCACACATAAGCAAGCAACAACTA
CGTACGCGTTGAATTACGTGTAGTCCCGCGAGAGCTGGCCGTACAACCAACCAGTCGCCCCGGCCCGCCTATATAAAGTA
CAGCCCG-GCACTCCCCTGCATAAACCAGCAAGCTTCACACACTTCCTTCCTTCCTGTTGTGGCTCCTGTACATGCGCGC
TAGCCTCGCCTCGTACGCGCAAGACCTCGCCA------------TGCCTGCCTTGGACGTCATGCCGGAGAAGGCCCACC
AGCCGGCCATGTCGCCGTCGCACCACGGCCACGGGTGGGACGCCAGCGGCGCCCCCACCCCCATGCACAAGAGGCTGGAC
GGCAAGGTGGCCATTGTCACCGGCGGCGCGCGGGGCATCGGGGAGGCCATCGTCAGGCTCTTCGTCAAGCACGGCGCCAA
GGTGGTCATCGCGGACATCGACGACGCCGCCGGCGAGGCGCTGGCCGCCTCGCTCGGCCCGCACGTCGCCTTCGTGCGCT
GCGACGTGTCCGTGGAGGAGGACGTGGAGCGCGCCGTCGACCGCGCCGTGTCGCGCTACGGCCGCCTCGACGTCTTCTGC
AACAACGCCGGGGTGCTGGGCCGCCAGACCAGCGCCGCCAAGAGCATCCTCACGTTCGACGCCGGCGAGTTCGACCGCGT
GCTCCGCGTCAACGCGCTGGGCACCGCGCTCGGCATGAAGCACGCCGGGCGCGCCATGATGGCCCGCCGCTACGGCAGCA
TCGTCTCCATCGCCAGCGTCGCCGGCGTGCTCGGCGGCCTCGGCCCGCACGCATACACCGCCTCCAAGCACGCCATCGTG
GGGCTCACCAAGAACGCCGCCTGCGAGCTGGGCGCGCACGGCATCCGCGTCAACTGCGTCTCGCCCTTCGGCGTCGCCAC
CCCAATGCTCATCAACGCGTGGCGCCAGGGCCACGACGCGTCCGCCGCCGACGACGCCGACGCCGACATCGGCCTCGACG
TGGCCGCGCCGAGCGACCAGGAGGTGGAGAAGATGGAGGAGGTGGTGAGGAGCCTCGCCACGCTCAAGGGGTCCACCCTC
AGGCCCAGGGACATCGCCGAGGCGGTGCTCTTCCTGGCCAGCGACGACTCCAGATACGTGTCCGGCCACAACCTCGTGGT
GGACGGCGGCGTCACCACCTCAAGAAACTTGATCGGGCTGTG-AAAATCACATGGCCGACCTCGCATCAAGGCACCTACG
TAATGTAGATCAGTAGGAGGAACAAGGACGATTGTTTAGTCTGCAATAACTGTACGCAAGTTC----TTTGGTTGGTTCG
GTTAATTGGTTGATTGATTCAGTGTGCTATTCGTCCGAGCATTGTTGCTTCCGTGTCCCATTTTTCTGGCTTGTTTCTG-
-------AACGCTCCAATCGTTTGGCCTCTGGCTAGCAGCCTAGCAGATACG-----ATCTGAGACGGAAAGTACAGTAA
GTACTGCGAATCAGTTAGCACTAGCACTAGCACTAGCCTAGCTTGCAGCCTTGGGTACTTGGTGCACTGTACACGCATGT
ACTTTTATGAACCAGTTGTGATTATCAAACGGGCCACTGGGAAATTTTGGGCCGCACACACACACACACGCTCTCTTCCG
CTAGAGTTGGGATGGTTGATAGTC---TGTG---CATTTACAATTGGCAACTAGGCGACGGGTAAGCTGGTTCCCAGGGT
GCGATCTATCTGTAGATTTGACATGGTTGCTACTCCTACT--TTGTATATGCCCATTGGCGAGCAGAGGCAGCAACTAGG
GTACGGGGCACCAATAATGCGGTTTCCCCGAGCAAATCTATCTGTCGATTTGAAACAATTTTCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATTTTCTGCAGAGCGGAGCTGAGGAAGAAGCAGCTGCGTGCGGGTTTCCGGGCCAGGA
AAAAGACGCGATACAGTTCGTAGGAGAGATTCCATGGGGAGTTCAAAATGGACCGGAAAGATCGAAGGGCAGAATATATG
TATAAACTGGGGAAAAGGGATGGCTGGCCTAAAAGTTGAATGCAGCCGAGCCACGTCTTGCGTTCCAGCAGCCTGGCCGT
CTAGTGTAGGGACCTCAACGCGCATTACGCAATGCTGCGTACGCGCTCACGAAGCTCACCGCATCG--------------
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>SNPs
----------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
------------------------------S-------S-----------------------------S-----------
-------SSSSSSSS-SSSSS-SSSS------S--S-S-----------------------------------------S
--------------------SSSSSSSSSSSSSSSSSSSSSSSSS------S----------------------------
--S----------------------------S-----------------S------------------------------
-----------------------------------------------------------SS-------------------
---S----------------------------------------S-SSSSSSSSSSSSSSSS------------------
--------S------------------SSS-----------------SS--SSSSSS------------------S----
-------------------------------------------------------------S----------------S-
----------------------------------------------------S---------------------------
--------------------------S-----------------------------------------------------
----------------------------S-SS------------------------------------------------
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---------------------------------------------S----------------------------------
-------------------------------------------S------------------------------------
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------------------------------------------------------------------S-------------
-------------------S------------------------------------------------------------
-----------------------------S--------------------------------------------------
------------------------------------------S-----------------------------------S-
------S-------------------------------------------------------------------------
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---------------------------------------------------------S----------------------
---------------------------------------------------------------SSSS-------------
--------------------------------------------------------S------S-------S--------
----------------------------------------------------SSSSS-----------------------
-----S-S-S-SS-SSSSSSS---------S----------------------S---------S----------------
--------S-------------------------------S---------------------S-----------------
-----------------------S------SSSS------------------------------S---------------
-----S--------------------------S--------------------------------S-S----------S-
-------------------------------------S-------------------------S-SS-SS----------
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------------------------------------------------------------------------S-------
-------------------------S------------------------------------S-------S---------
-----------------------------------------S-----SS-S----------------------SS-----
------------------S-------------SS--S-----------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_408
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--------------------------------------------------------------------ACCCATAATTTC
TCCGGCGG------------------------------------------------------------------------
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>reverse_2224
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---------------------------------------------------------------CTCTGGCTCGTCTCTGT
GTC-----------------------------------------------------------------------------
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