Multiple sequence alignment - TraesCS4B01G184500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G184500 chr4B 100.000 1572 0 0 933 2504 403674718 403673147 0 2904
1 TraesCS4B01G184500 chr4B 100.000 553 0 0 1 553 403675650 403675098 0 1022
2 TraesCS4B01G184500 chr4D 91.584 1509 81 19 947 2444 323372660 323371187 0 2041
3 TraesCS4B01G184500 chr4D 92.613 555 13 7 1 553 323373349 323372821 0 773
4 TraesCS4B01G184500 chr4A 90.077 907 61 14 940 1829 148547688 148548582 0 1149
5 TraesCS4B01G184500 chr4A 93.578 545 27 6 13 553 148546996 148547536 0 806
6 TraesCS4B01G184500 chr4A 89.694 621 25 14 1814 2431 148548731 148549315 0 756


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G184500 chr4B 403673147 403675650 2503 True 1963.000000 2904 100.000000 1 2504 2 chr4B.!!$R1 2503
1 TraesCS4B01G184500 chr4D 323371187 323373349 2162 True 1407.000000 2041 92.098500 1 2444 2 chr4D.!!$R1 2443
2 TraesCS4B01G184500 chr4A 148546996 148549315 2319 False 903.666667 1149 91.116333 13 2431 3 chr4A.!!$F1 2418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 988 1.609072 GGAGCGGGAATTGCTTAATCC 59.391 52.381 0.0 0.0 44.18 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2466 2672 2.04534 CCCCGGCTGGAACGATTT 60.045 61.111 15.09 0.0 37.49 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 2.080286 AAGGACACCTCGAATGAACG 57.920 50.000 3.45 0.00 30.89 3.95
169 171 6.939730 TGTAAGCAGAACCTTCATATTTGTCA 59.060 34.615 0.00 0.00 0.00 3.58
971 985 2.769663 TCTAGGAGCGGGAATTGCTTAA 59.230 45.455 0.00 0.00 44.18 1.85
974 988 1.609072 GGAGCGGGAATTGCTTAATCC 59.391 52.381 0.00 0.00 44.18 3.01
994 1008 1.999735 CGGTGTGTTTCTGCGTGATAT 59.000 47.619 0.00 0.00 0.00 1.63
1017 1036 2.092212 ACAAATGGAGATGATTCCGCCT 60.092 45.455 0.00 0.00 40.27 5.52
1128 1147 1.564207 CGCAGAGATCTCGCATGAAA 58.436 50.000 27.24 0.00 34.09 2.69
1260 1279 1.994467 GCAGAATCGTGTGCTCTCG 59.006 57.895 3.99 3.99 40.82 4.04
1263 1282 2.507102 AATCGTGTGCTCTCGGCG 60.507 61.111 0.00 0.00 45.43 6.46
1274 1293 4.170062 CTCGGCGGACGCTCGTTA 62.170 66.667 16.72 3.33 43.86 3.18
1278 1297 2.879462 GCGGACGCTCGTTACCTG 60.879 66.667 9.76 0.00 38.26 4.00
1298 1317 2.230994 TACAGCCTTCTCCAGCAGCG 62.231 60.000 0.00 0.00 0.00 5.18
1299 1318 4.093291 AGCCTTCTCCAGCAGCGG 62.093 66.667 0.00 0.00 0.00 5.52
1315 1334 4.475135 GGAACTCCCAGCTCCGCC 62.475 72.222 0.00 0.00 34.14 6.13
1316 1335 3.706373 GAACTCCCAGCTCCGCCA 61.706 66.667 0.00 0.00 0.00 5.69
1455 1474 0.179000 AGATGATGTTCCAGCCGGAC 59.821 55.000 5.05 0.00 42.67 4.79
1485 1504 2.899256 TGATATCATGGACGATGCAGGA 59.101 45.455 0.00 0.00 32.18 3.86
1519 1538 4.433186 CTCTGACTCGGGAGCATATTAG 57.567 50.000 0.00 0.00 0.00 1.73
1520 1539 3.823873 CTCTGACTCGGGAGCATATTAGT 59.176 47.826 0.00 0.00 0.00 2.24
1521 1540 4.981812 TCTGACTCGGGAGCATATTAGTA 58.018 43.478 0.00 0.00 0.00 1.82
1529 1548 8.634444 ACTCGGGAGCATATTAGTATCATATTC 58.366 37.037 0.00 0.00 0.00 1.75
1545 1569 4.694982 TCATATTCTGTGTGATGCGTGTTT 59.305 37.500 0.00 0.00 0.00 2.83
1553 1577 1.600013 GTGATGCGTGTTTGTGTGGTA 59.400 47.619 0.00 0.00 0.00 3.25
1557 1581 2.203401 TGCGTGTTTGTGTGGTACTAC 58.797 47.619 1.77 1.77 0.00 2.73
1562 1586 5.562696 GCGTGTTTGTGTGGTACTACTAGTA 60.563 44.000 10.95 1.89 0.00 1.82
1563 1587 6.082338 CGTGTTTGTGTGGTACTACTAGTAG 58.918 44.000 25.30 25.30 39.04 2.57
1605 1629 2.418628 CGTTGGTGTGACTGTTGACTTT 59.581 45.455 0.00 0.00 0.00 2.66
1606 1630 3.119990 CGTTGGTGTGACTGTTGACTTTT 60.120 43.478 0.00 0.00 0.00 2.27
1611 1635 4.511826 GGTGTGACTGTTGACTTTTCCTAG 59.488 45.833 0.00 0.00 0.00 3.02
1614 1638 5.815740 TGTGACTGTTGACTTTTCCTAGTTC 59.184 40.000 0.00 0.00 0.00 3.01
1650 1674 4.092968 ACGTGAGTTTCTTGTGTGAACTTC 59.907 41.667 0.00 0.00 46.40 3.01
1733 1761 4.089923 GTCAAGTTTGTGAAGTTGTGTTGC 59.910 41.667 6.60 0.00 43.54 4.17
1734 1762 2.862512 AGTTTGTGAAGTTGTGTTGCG 58.137 42.857 0.00 0.00 0.00 4.85
1735 1763 1.320259 GTTTGTGAAGTTGTGTTGCGC 59.680 47.619 0.00 0.00 0.00 6.09
1737 1765 1.029408 TGTGAAGTTGTGTTGCGCCT 61.029 50.000 4.18 0.00 0.00 5.52
1738 1766 0.592247 GTGAAGTTGTGTTGCGCCTG 60.592 55.000 4.18 0.00 0.00 4.85
1739 1767 0.746204 TGAAGTTGTGTTGCGCCTGA 60.746 50.000 4.18 0.00 0.00 3.86
1740 1768 0.380378 GAAGTTGTGTTGCGCCTGAA 59.620 50.000 4.18 0.00 0.00 3.02
1741 1769 0.100503 AAGTTGTGTTGCGCCTGAAC 59.899 50.000 4.18 3.07 0.00 3.18
1742 1770 1.299089 GTTGTGTTGCGCCTGAACC 60.299 57.895 4.18 0.00 0.00 3.62
1766 1797 7.234371 ACCATAACTGAGATGTGTATCTAGCAT 59.766 37.037 0.00 0.00 43.63 3.79
1811 1842 5.674525 TGGAAAGCCAGTGAGATATTACTG 58.325 41.667 5.33 5.33 39.92 2.74
1812 1843 5.189736 TGGAAAGCCAGTGAGATATTACTGT 59.810 40.000 10.89 0.00 42.04 3.55
1851 2041 3.001026 CGCTAGTGCATCATTCTTCAGTG 59.999 47.826 0.00 0.00 39.64 3.66
1852 2042 3.937706 GCTAGTGCATCATTCTTCAGTGT 59.062 43.478 0.00 0.00 39.41 3.55
1862 2055 7.222999 GCATCATTCTTCAGTGTAGTTAGTACC 59.777 40.741 0.00 0.00 0.00 3.34
1867 2060 6.491383 TCTTCAGTGTAGTTAGTACCTGGAT 58.509 40.000 0.00 0.00 33.77 3.41
1868 2061 6.602406 TCTTCAGTGTAGTTAGTACCTGGATC 59.398 42.308 0.00 0.00 33.77 3.36
1869 2062 6.075949 TCAGTGTAGTTAGTACCTGGATCT 57.924 41.667 0.00 0.43 33.77 2.75
1870 2063 6.491383 TCAGTGTAGTTAGTACCTGGATCTT 58.509 40.000 0.00 0.00 33.77 2.40
1871 2064 6.952358 TCAGTGTAGTTAGTACCTGGATCTTT 59.048 38.462 0.00 0.00 33.77 2.52
1872 2065 7.453752 TCAGTGTAGTTAGTACCTGGATCTTTT 59.546 37.037 0.00 0.00 33.77 2.27
1873 2066 7.760340 CAGTGTAGTTAGTACCTGGATCTTTTC 59.240 40.741 0.00 0.00 31.34 2.29
1874 2067 7.674772 AGTGTAGTTAGTACCTGGATCTTTTCT 59.325 37.037 0.00 1.33 0.00 2.52
1909 2102 2.095263 CGGTCAAATTTTGCCATCGTCT 60.095 45.455 17.15 0.00 0.00 4.18
1943 2148 6.074648 TCAACTGACACCCCTTTTGATAAAT 58.925 36.000 0.00 0.00 0.00 1.40
1944 2149 6.553100 TCAACTGACACCCCTTTTGATAAATT 59.447 34.615 0.00 0.00 0.00 1.82
1945 2150 7.726291 TCAACTGACACCCCTTTTGATAAATTA 59.274 33.333 0.00 0.00 0.00 1.40
1946 2151 8.364142 CAACTGACACCCCTTTTGATAAATTAA 58.636 33.333 0.00 0.00 0.00 1.40
1947 2152 8.664669 ACTGACACCCCTTTTGATAAATTAAT 57.335 30.769 0.00 0.00 0.00 1.40
1948 2153 9.762381 ACTGACACCCCTTTTGATAAATTAATA 57.238 29.630 0.00 0.00 0.00 0.98
2024 2229 8.645487 GCATTCTCAAATCATGAAGAAGAAAAC 58.355 33.333 11.98 6.89 37.67 2.43
2028 2233 9.520204 TCTCAAATCATGAAGAAGAAAACAAAC 57.480 29.630 0.00 0.00 37.67 2.93
2043 2248 0.878523 CAAACTGGAGACGTTGCCGA 60.879 55.000 0.00 0.00 37.88 5.54
2044 2249 0.034896 AAACTGGAGACGTTGCCGAT 59.965 50.000 0.00 0.00 37.88 4.18
2049 2254 0.389948 GGAGACGTTGCCGATGTTCT 60.390 55.000 0.00 0.00 37.88 3.01
2170 2375 7.532884 CGAAGTGCTTATACACCTTAAACAAAC 59.467 37.037 0.00 0.00 41.67 2.93
2377 2583 0.943835 GGCGATGGTGGTTTGTTTGC 60.944 55.000 0.00 0.00 0.00 3.68
2452 2658 9.770097 TTTTTGATACATCATACTCTCTCCATC 57.230 33.333 0.00 0.00 36.56 3.51
2453 2659 7.473735 TTGATACATCATACTCTCTCCATCC 57.526 40.000 0.00 0.00 36.56 3.51
2454 2660 6.798766 TGATACATCATACTCTCTCCATCCT 58.201 40.000 0.00 0.00 0.00 3.24
2455 2661 7.933223 TGATACATCATACTCTCTCCATCCTA 58.067 38.462 0.00 0.00 0.00 2.94
2456 2662 8.394040 TGATACATCATACTCTCTCCATCCTAA 58.606 37.037 0.00 0.00 0.00 2.69
2457 2663 9.249053 GATACATCATACTCTCTCCATCCTAAA 57.751 37.037 0.00 0.00 0.00 1.85
2458 2664 7.921041 ACATCATACTCTCTCCATCCTAAAA 57.079 36.000 0.00 0.00 0.00 1.52
2459 2665 8.503428 ACATCATACTCTCTCCATCCTAAAAT 57.497 34.615 0.00 0.00 0.00 1.82
2460 2666 9.607333 ACATCATACTCTCTCCATCCTAAAATA 57.393 33.333 0.00 0.00 0.00 1.40
2464 2670 9.664332 CATACTCTCTCCATCCTAAAATAATGG 57.336 37.037 0.00 0.00 41.12 3.16
2465 2671 7.084268 ACTCTCTCCATCCTAAAATAATGGG 57.916 40.000 0.00 0.00 40.34 4.00
2466 2672 6.851836 ACTCTCTCCATCCTAAAATAATGGGA 59.148 38.462 0.00 0.00 40.34 4.37
2467 2673 7.350921 ACTCTCTCCATCCTAAAATAATGGGAA 59.649 37.037 0.00 0.00 40.34 3.97
2468 2674 8.113114 TCTCTCCATCCTAAAATAATGGGAAA 57.887 34.615 0.00 0.00 40.34 3.13
2469 2675 8.736675 TCTCTCCATCCTAAAATAATGGGAAAT 58.263 33.333 0.00 0.00 40.34 2.17
2470 2676 8.940397 TCTCCATCCTAAAATAATGGGAAATC 57.060 34.615 0.00 0.00 40.34 2.17
2471 2677 7.665559 TCTCCATCCTAAAATAATGGGAAATCG 59.334 37.037 0.00 0.00 40.34 3.34
2472 2678 7.294584 TCCATCCTAAAATAATGGGAAATCGT 58.705 34.615 0.00 0.00 40.34 3.73
2473 2679 7.782644 TCCATCCTAAAATAATGGGAAATCGTT 59.217 33.333 0.00 0.00 40.34 3.85
2474 2680 8.082242 CCATCCTAAAATAATGGGAAATCGTTC 58.918 37.037 0.00 0.00 36.99 3.95
2482 2688 3.497879 GAAATCGTTCCAGCCGGG 58.502 61.111 2.18 0.00 38.37 5.73
2483 2689 2.045340 AAATCGTTCCAGCCGGGG 60.045 61.111 2.18 0.00 37.22 5.73
2484 2690 4.796495 AATCGTTCCAGCCGGGGC 62.796 66.667 2.18 0.18 42.33 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 3.249320 GCGGGGGATCGTTAAAATACTTC 59.751 47.826 0.00 0.00 0.00 3.01
139 141 8.894768 AATATGAAGGTTCTGCTTACAGTATC 57.105 34.615 0.00 0.00 44.77 2.24
141 143 8.100791 ACAAATATGAAGGTTCTGCTTACAGTA 58.899 33.333 0.00 0.00 44.77 2.74
185 187 1.435577 GGTGCCAACCAAGTACGTAG 58.564 55.000 0.00 0.00 46.75 3.51
195 197 8.223951 CATTGAATTTTCCAATGGTGCCAACC 62.224 42.308 0.00 0.00 44.18 3.77
377 379 4.142138 GGTGTATATATGGAGGCGAGGAAG 60.142 50.000 0.00 0.00 0.00 3.46
378 380 3.767673 GGTGTATATATGGAGGCGAGGAA 59.232 47.826 0.00 0.00 0.00 3.36
379 381 3.245479 TGGTGTATATATGGAGGCGAGGA 60.245 47.826 0.00 0.00 0.00 3.71
932 939 5.212532 CTAGAAGTAGTACTAGGAGCGGA 57.787 47.826 1.87 0.00 34.32 5.54
941 948 2.776536 TCCCGCTCCTAGAAGTAGTACT 59.223 50.000 0.00 0.00 0.00 2.73
968 982 1.801771 CGCAGAAACACACCGGATTAA 59.198 47.619 9.46 0.00 0.00 1.40
971 985 1.070786 ACGCAGAAACACACCGGAT 59.929 52.632 9.46 0.00 0.00 4.18
974 988 1.424403 TATCACGCAGAAACACACCG 58.576 50.000 0.00 0.00 0.00 4.94
994 1008 3.882888 GGCGGAATCATCTCCATTTGTTA 59.117 43.478 0.00 0.00 34.91 2.41
1086 1105 1.376037 GAGGCGGTTGGAGGTCTTG 60.376 63.158 0.00 0.00 0.00 3.02
1125 1144 3.657835 CTCGCGCTGCTGCCTTTTC 62.658 63.158 5.56 0.00 35.36 2.29
1178 1197 3.499737 GCATGGCCTCGTTGTCGG 61.500 66.667 3.32 0.00 37.69 4.79
1260 1279 4.125695 AGGTAACGAGCGTCCGCC 62.126 66.667 8.23 0.00 42.30 6.13
1263 1282 0.523072 TGTACAGGTAACGAGCGTCC 59.477 55.000 0.00 0.00 46.39 4.79
1274 1293 1.270907 CTGGAGAAGGCTGTACAGGT 58.729 55.000 23.95 0.00 0.00 4.00
1278 1297 0.742635 GCTGCTGGAGAAGGCTGTAC 60.743 60.000 0.00 0.00 0.00 2.90
1455 1474 3.519579 GTCCATGATATCATCGAGCTGG 58.480 50.000 15.49 13.89 33.61 4.85
1485 1504 1.228894 TCAGAGCCACGGGAGACTT 60.229 57.895 0.00 0.00 0.00 3.01
1519 1538 5.463392 ACACGCATCACACAGAATATGATAC 59.537 40.000 0.00 0.00 31.83 2.24
1520 1539 5.600696 ACACGCATCACACAGAATATGATA 58.399 37.500 0.00 0.00 31.83 2.15
1521 1540 4.445453 ACACGCATCACACAGAATATGAT 58.555 39.130 0.00 0.00 33.28 2.45
1529 1548 1.063912 ACACAAACACGCATCACACAG 59.936 47.619 0.00 0.00 0.00 3.66
1545 1569 5.868454 TCACACTACTAGTAGTACCACACA 58.132 41.667 30.34 11.20 43.98 3.72
1553 1577 6.038825 GCTCACATCATCACACTACTAGTAGT 59.961 42.308 26.61 26.61 46.52 2.73
1557 1581 5.512753 AGCTCACATCATCACACTACTAG 57.487 43.478 0.00 0.00 0.00 2.57
1562 1586 3.743584 GCCATAGCTCACATCATCACACT 60.744 47.826 0.00 0.00 35.50 3.55
1563 1587 2.547211 GCCATAGCTCACATCATCACAC 59.453 50.000 0.00 0.00 35.50 3.82
1564 1588 2.804212 CGCCATAGCTCACATCATCACA 60.804 50.000 0.00 0.00 36.60 3.58
1611 1635 4.569564 ACTCACGTAGTTCCAAAACAGAAC 59.430 41.667 0.00 0.00 41.61 3.01
1733 1761 2.672961 TCTCAGTTATGGTTCAGGCG 57.327 50.000 0.00 0.00 0.00 5.52
1734 1762 3.624861 CACATCTCAGTTATGGTTCAGGC 59.375 47.826 0.00 0.00 0.00 4.85
1735 1763 4.836825 ACACATCTCAGTTATGGTTCAGG 58.163 43.478 0.00 0.00 0.00 3.86
1737 1765 7.423844 AGATACACATCTCAGTTATGGTTCA 57.576 36.000 0.00 0.00 36.80 3.18
1738 1766 7.596995 GCTAGATACACATCTCAGTTATGGTTC 59.403 40.741 0.00 0.00 40.81 3.62
1739 1767 7.069950 TGCTAGATACACATCTCAGTTATGGTT 59.930 37.037 0.00 0.00 40.81 3.67
1740 1768 6.551227 TGCTAGATACACATCTCAGTTATGGT 59.449 38.462 0.00 0.00 40.81 3.55
1741 1769 6.986250 TGCTAGATACACATCTCAGTTATGG 58.014 40.000 0.00 0.00 40.81 2.74
1807 1838 8.008513 AGCGAAGGAGATTAAGAAATACAGTA 57.991 34.615 0.00 0.00 0.00 2.74
1809 1840 8.138712 ACTAGCGAAGGAGATTAAGAAATACAG 58.861 37.037 0.00 0.00 0.00 2.74
1811 1842 7.095982 GCACTAGCGAAGGAGATTAAGAAATAC 60.096 40.741 0.00 0.00 0.00 1.89
1812 1843 6.924060 GCACTAGCGAAGGAGATTAAGAAATA 59.076 38.462 0.00 0.00 0.00 1.40
1824 2014 2.432146 AGAATGATGCACTAGCGAAGGA 59.568 45.455 0.00 0.00 46.23 3.36
1851 2041 8.751242 AGAAGAAAAGATCCAGGTACTAACTAC 58.249 37.037 0.00 0.00 36.02 2.73
1852 2042 8.896722 AGAAGAAAAGATCCAGGTACTAACTA 57.103 34.615 0.00 0.00 36.02 2.24
1862 2055 6.015603 AGCCTTCAAAAGAAGAAAAGATCCAG 60.016 38.462 6.79 0.00 34.26 3.86
1867 2060 4.275936 CCGAGCCTTCAAAAGAAGAAAAGA 59.724 41.667 6.79 0.00 34.26 2.52
1868 2061 4.036852 ACCGAGCCTTCAAAAGAAGAAAAG 59.963 41.667 6.79 0.00 34.26 2.27
1869 2062 3.951680 ACCGAGCCTTCAAAAGAAGAAAA 59.048 39.130 6.79 0.00 34.26 2.29
1870 2063 3.551846 ACCGAGCCTTCAAAAGAAGAAA 58.448 40.909 6.79 0.00 34.26 2.52
1871 2064 3.139077 GACCGAGCCTTCAAAAGAAGAA 58.861 45.455 6.79 0.00 34.26 2.52
1872 2065 2.104111 TGACCGAGCCTTCAAAAGAAGA 59.896 45.455 6.79 0.00 34.26 2.87
1873 2066 2.494059 TGACCGAGCCTTCAAAAGAAG 58.506 47.619 0.00 0.00 0.00 2.85
1874 2067 2.631160 TGACCGAGCCTTCAAAAGAA 57.369 45.000 0.00 0.00 0.00 2.52
1909 2102 4.141711 GGGGTGTCAGTTGATCTGCTATTA 60.142 45.833 0.00 0.00 43.32 0.98
1951 2156 9.502091 ACAAAGAGCAGTGTCAGTATTTATTTA 57.498 29.630 0.00 0.00 0.00 1.40
1955 2160 6.989759 TGAACAAAGAGCAGTGTCAGTATTTA 59.010 34.615 0.00 0.00 0.00 1.40
1969 2174 3.542712 TTGCGAATCTGAACAAAGAGC 57.457 42.857 0.00 0.00 0.00 4.09
2043 2248 3.773860 TCGTTTGTGTGCAAAGAACAT 57.226 38.095 0.00 0.00 44.27 2.71
2044 2249 3.238441 GTTCGTTTGTGTGCAAAGAACA 58.762 40.909 18.67 0.15 44.27 3.18
2049 2254 6.526222 GTTAATTTGTTCGTTTGTGTGCAAA 58.474 32.000 0.00 0.00 41.77 3.68
2170 2375 4.406173 ACGCTCGAGTGTCGCTGG 62.406 66.667 25.45 2.13 40.21 4.85
2321 2527 2.740447 GTCGACGGAGGCAAATTAAAGT 59.260 45.455 0.00 0.00 0.00 2.66
2377 2583 2.162681 GGAGTGGATGAAACCAAGTGG 58.837 52.381 0.00 0.00 41.87 4.00
2381 2587 3.689347 CAGATGGAGTGGATGAAACCAA 58.311 45.455 0.00 0.00 41.87 3.67
2432 2638 9.607333 TTTTAGGATGGAGAGAGTATGATGTAT 57.393 33.333 0.00 0.00 0.00 2.29
2433 2639 9.607333 ATTTTAGGATGGAGAGAGTATGATGTA 57.393 33.333 0.00 0.00 0.00 2.29
2434 2640 7.921041 TTTTAGGATGGAGAGAGTATGATGT 57.079 36.000 0.00 0.00 0.00 3.06
2438 2644 9.664332 CCATTATTTTAGGATGGAGAGAGTATG 57.336 37.037 0.00 0.00 42.31 2.39
2439 2645 8.830741 CCCATTATTTTAGGATGGAGAGAGTAT 58.169 37.037 3.28 0.00 42.31 2.12
2440 2646 8.016652 TCCCATTATTTTAGGATGGAGAGAGTA 58.983 37.037 3.28 0.00 42.31 2.59
2441 2647 6.851836 TCCCATTATTTTAGGATGGAGAGAGT 59.148 38.462 3.28 0.00 42.31 3.24
2442 2648 7.321717 TCCCATTATTTTAGGATGGAGAGAG 57.678 40.000 3.28 0.00 42.31 3.20
2443 2649 7.705912 TTCCCATTATTTTAGGATGGAGAGA 57.294 36.000 3.28 0.00 42.31 3.10
2444 2650 8.946797 ATTTCCCATTATTTTAGGATGGAGAG 57.053 34.615 3.28 0.00 42.31 3.20
2445 2651 7.665559 CGATTTCCCATTATTTTAGGATGGAGA 59.334 37.037 3.28 0.00 42.31 3.71
2446 2652 7.448469 ACGATTTCCCATTATTTTAGGATGGAG 59.552 37.037 3.28 0.00 42.31 3.86
2447 2653 7.294584 ACGATTTCCCATTATTTTAGGATGGA 58.705 34.615 3.28 0.00 42.31 3.41
2448 2654 7.524717 ACGATTTCCCATTATTTTAGGATGG 57.475 36.000 0.00 0.00 39.99 3.51
2449 2655 8.082242 GGAACGATTTCCCATTATTTTAGGATG 58.918 37.037 0.00 0.00 45.27 3.51
2450 2656 8.178313 GGAACGATTTCCCATTATTTTAGGAT 57.822 34.615 0.00 0.00 45.27 3.24
2451 2657 7.576861 GGAACGATTTCCCATTATTTTAGGA 57.423 36.000 0.00 0.00 45.27 2.94
2465 2671 2.112815 CCCCGGCTGGAACGATTTC 61.113 63.158 15.09 0.00 37.49 2.17
2466 2672 2.045340 CCCCGGCTGGAACGATTT 60.045 61.111 15.09 0.00 37.49 2.17
2467 2673 4.796495 GCCCCGGCTGGAACGATT 62.796 66.667 15.09 0.00 37.49 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.