>input_sequence_78105
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----------------------------------------------------------ATGGAGATGATTCCGCCTGCTG
CGGCGTCGTCGGCGCCATCACGCCGTGGTGGCGCGGTCACCGAGGAAGAGCGGCAGCGCAAACGCAAGACCTCCAACCGC
CTCTCGGCGCAGAGATCTCGCATGAAAAGGCAGCAGCGCGAGGACAATCTGGCCGCGCGCGCGGCCCAGCTCGAGACCGA
CAACGAGGCCATGCGTGTCACCACCGGCCTCGTGCAGCAGCAATGCAGCCTGGTCGAGCAGCAGAATCGTGTGCTCTCGG
CGGACGCTCGTTACCTGTACAGCCTTCTCCAGCAGCGGAACTCCCAGCTCCGCCAGCTCGGGGAGCTCGCCGGCGTTCCG
ATGGACGTGCAGGAAATCCCCGTCCACCTCACACAGCTGTACGGCGGCCTGCAGACGCCACCAGCGCCGCCCCTGTCCTT
CCCGCCGGAGATTCAGATGATGTTCCAGCCGGACCAGCTCGATGATATCATGGACGATGCAGGAAGTCTCCCGTGGCTCT
GA------------------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G184500
GTTTCATCAGTAATAAA-GAAGTAAAATACACAGGTGCCCTTTTGGTCAGACAAAGGACACCTCGAATGAACGAAGTATT
TTAACGATCCCCCGCAAAATAAAATATAGAGATCATTTAAAAAAAATGATCACGGGGGGAGATACTGTAAGCAGAACCTT
CATATTTGTCAGGTCATGGAAGTTTCCTACGTACTTGGTTGGCACCATTGGAAAATTCAATGCATGCATGCTGCAGCACT
GACAGCTCCGCCAATGAGGCAAGCCCAACGTCGCAACAACAAAAGCGACGTCTCCATACATTTTTACGAGTTGGTTGGTA
CGCACACAGCACTAGCGAATTTGGCCGGCGGCGTACGTACGCACACCGGCAAAGGGGCCTTCCTCGCCT-----CCATAT
ATACACCATCGTTCCCAGAAGAAACATCAACCAAGCCATCCGCACCCCTCGAGCTCCGGCGGAAGTGCTGCCCGCGCCGT
CCATGTCGACGCCGCCGCCGCTGCCTCCTAGCCTCCTCCACATCTGCTGCCTGCACTCGCTCTCCATCGTCCTCCTCCAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCTCCTAGTAC-----T--
ACTTCTAGGAGCGGGAATTGCTTAATCCGGTGTGTTTCTGCGTGATAT-----AACAAATGGAGATGATTCCGCCTGCTG
CGGCGTCGTCGGCGCCATCACGCCGTGGTGGCGCGGTCACCGAGGAAGAGCGGCAGCGCAAACGCAAGACCTCCAACCGC
CTCTCGGCGCAGAGATCTCGCATGAAAAGGCAGCAGCGCGAGGACAATCTGGCCGCGCGCGCGGCCCAGCTCGAGACCGA
CAACGAGGCCATGCGTGTCACCACCGGCCTCGTGCAGCAGCAATGCAGCCTGGTCGAGCAGCAGAATCGTGTGCTCTCGG
CGGACGCTCGTTACCTGTACAGCCTTCTCCAGCAGCGGAACTCCCAGCTCCGCCAGCTCGGGGAGCTCGCCGGCGTTCCG
ATGGACGTGCAGGAAATCCCCGTCCACCTCACACAGCTGTACGGCGGCCTGCAGACGCCACCAGCGCCGCCCCTGTCCTT
CCCGCCGGAGATTCAGATGATGTTCCAGCCGGACCAGCTCGATGATATCATGGACGATGCAGGAAGTCTCCCGTGGCTCT
GACTCGGGAGCATATTAGTATCATATTCTG-----TGTGATGCGTGTTTGTGTGGTACTACTAGTAGTGTGATGATGTGA
GCTATGGCGTTGGTGTGACTGTTGACTTTTCCTAGTTCTGTTTTGGAACTACGTGAGTTTCTTGTGTGAACTTCTACGTG
TA----GTACACAAGAGTGTGATGTGTTGCTCTATAGTACAATATTTGAATAAATAAGTCAAGTTTGTGAAGTTGTGTTG
CGCCTGAACC---ATAACTGAGATGTGTATCTAGCATATCTCGCAAAATATCTATCTATGGAAAGCCAGTGAGATATTAC
TGT-----------------------------------------------------------------------------
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--ATTTCTTAATCTCCTTCGCTAGTGCATCATTCTTCAGTGTAG---TTAGTACCTGGATCTTTTCTTCTTTTGAAGGCT
CGGTCAAATTTTGCCATCGTCTAATAGCAGATCAACTGACACCCCTTTTGATAA------------ATTAATAAATAAAT
AAATACTGACACTGCTCTTTGTTCAGATTCGCAAACACCACTGCATTCTCAAATCATGAAGAAGAAAACAAACTGGAGAC
GTTGCCGATGTTCTTTGCACACAAACGAACAAATTAACGCCCGGTGGTCGCTGCCATCTGATACGGCTGATACGGACGCC
GACGCAACCGATGCTGAGTTGCTGATCGCGAAGTGCTTATACACCTTAAACAAACCAGCGACACTCGAGCGTGACTAGAC
GTCGATGCGTGGATGCGTGAGCGTGATGCGGACCGGCAGACTTCG-CGTCTCCTGGCTTGTCGTCACCGCGGGCGCCGCG
ACGCCGGGCAGACGGCATGCATCGCTATTCACGGACCAGCCGGGAGACTTTAATTTGCCTCCGTCGACTTCACCATGCAC
GACGGCGATGGTGGTTTGTTTGCCACTTGGTTTCATCCACTCCATCTGCCGAGCTTTCAGTAAAGAGATTTTTTTTGATA
CATCATACTCTCTCCATCCTAAAATAATGGGAAATCGTTCCAGCCGGGGCGCCGGCCCAAGGTTGGGCC
>chr4D_1
GTTTCATCAGTAATAAAAGAAGTAAAATACACAGGTGCCCTTTTGGTCAGACAAAGGACACCTCGAATGAACTAAGTATT
TTAACGA----------------------AGATCGTTTAGAAAAAAATCACAGGGGGGAAT--ACTGTAAACAGAACCTT
CATATTTGTCCGGTCATGGAAGTTTCATACGTACTTCGTTGGCACCATTGGAAAATTCAATGCATGCATGCTGCAGCACT
GACAGCTTCGCCAATGAGGCAAGTCCAACGTCGCAACAACAAAAGCGACGTCTCCATACATTTTTACGAGTTGGTTGGTA
CGCACACAGCACTAGCGAATTTGGCCGGCGGCGTACGTATGCACACCGGCAAAGGGGCTC-CCTCGCCT-----CCATAT
ATACACCATCGTTCCCAGAAGAAACATCAAGCAAGCCATCCGCACCCCTCGAGCTCCGGCGGAAGTGCTGCCCGCGCCGT
CCATGTCGACGCCGCCGCCGCTGCCTCCTAGCCTCCTCCACATCTGCTGCCTGCACTCACTCTCCATCGTCCTCCTCCAC
TTCCTCTACGTGATCTCCTGATCCGCCCCCCTCTCCTCATCCAAAGTATAGTAGTGGTAGTAGTGTGTTTCCTTTCCTTC
TACGTTCTTGTTTCCGTACCTTCTTCTTCCTCCGGCTTGCAAGTAAGTGCTACGTTCTCCA-------------------
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-----------------------------------------------------------CCGCTCCTGGTACACTGGT--
ACTTCTAGGAGCGGGAATTGCGTGCTCTGGTGTGTTTCTGCGTGATACTCTACAACAAATGGAGATGATTCCGCCGGCTG
CGGCGGCGGCGGCGCCACCACGCCGTGGCGGCGCGGTCACCGAGGAGGAGCGGCAGCGCAAACGGAAGACCTCCAACCGC
CTCTCGGCGCAGAGATCTCGCGTTAAGAGGCAGCAGCGCGAGGACAATCTGGCCGCGCGCGTGGCCCAGCTCTCGATCGA
CAACGAGGCCATGCGTGTCACCACCGGCCTCGTGCAGCAGCAATGCAGCCTGGTCGAGCAGCAGAACCGTGTGCTCTTCG
CAGACGCTCGTTGCCTCTACAGCCTTCTCCAGCAGCAAAACTCCCAACTCCGCTTGCTCGGGCAGATCACCGGCGTTCCG
ATGGACGTGCAGGAAATCCCCGTCCACCTCACACAGCTGTACGGCGGCCTGCAGACGCCACCGGCGCCGCCCCTATCCTT
CCCGCCGGAGATTCAGATGATGTTCCAGCCGGAGCAGCTCGATGATATCATGGACGATGCAGGGAGTCTCCCGTGGCTCT
GACTCGGGAGCGTATTA---TCATATTGTG-----TGTGATGCGTGTTCGTGTGGTGCTAGTAGT---GTGATGATGTGA
GCTATGGCGTTGCTGCGACTGTTGACTTGCCCTACTTTTGTTTTGGCACTACGTGAGTTTCTTGTG--AACTTGTACGTG
TA----GTACACAAGAGTGTGATGTGTTGCTCTATACTACAATATTTGAATAAATAAGTCAAGTTTGTGAAGTTGTGTTG
TTGCGCCTGGAATATAACTGAGATGTGTATCTAGCAGATCTCGCAAA-----TATCTACAGAAAGCCAGTGAGCTATC--
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--ATTTCTTAATCGCCTTCGCTAGTGCATCATTCTCCAGT--AGTTATTAGTACTTGGA--------TCTTTTGAAGGCT
CGGTCAAATTTTGCCATCGTCCAATAGCAGATCAACTGACACTCCGTTTGATAA------------A---------AAAA
AAATACTGACACTCCTCTTTGTTCAGATTCGCAAACACCACTGCATTCTCAAATCATGAAGAAGAAAAAAAAGTGGAGAC
GTTGCCGTGGTTCGTTGCACACAAACGAACAAATTAACGCCTGGTGGTCGCTGCCATCTGATACGGCTGATACGGACGCC
GACGCAACCGATGCTGAGTTGCTGATCGCGAAGTGCTTATACACCTTAAACAAAGCAGCGACACTCGAGCGTGACTAGAC
GTCGATGCGTGAGTGCGTGAGCGCGATGCGGACCGCCAGACTTCGCCGTCTCCTGGCTTGTCGTCACAGCGGGCGCCTCG
ACGCCGGGCAGACGGCATGCATCGCTATTCACGGACCAGCCGGGAGGCTTTAATTTGCCTCCGTCGACTTCACCATGCAC
GACGGCGATGGTGGTTTGTTTGTCACCTGGTTTCATCCACTCCATCTGCCGAGCTTTCAGTAAAGAGATTTTTTTTGGGT
ACATCGTACT-----------------------------------------------------------
>chr4A_13
------------ATAAA-GAAGT-AAATACAGAGGTGCCCTTTTGGTCAGACAAACGACACCTCGAATGAACCAAGTATT
TTAACGATCCCCCGCAAAATAAAATATAGAGATCA-TTTAGAAAAATGATCACAGGGGGATAA--TGTAAGTAGAACCTT
CATATTCGTCCGGTCATAGAAGTTTCGTACGTACTTCGTTGGCACCATTGGAAAATTCAATGCATGCATGCTGCGGCACT
GACAGCTCCGCCAATGAGGCAAGCCCAACATCGCAACAACAAAAGCGACGTCTCCATACATTTTTACGAGTTGGTTGGTA
CGCACAGAGCACTAGCGAATTTGGCCGGCGGCCTACGTATGCGCACCGGCGAAGGGGCTC-CCCTCCATCGCGACCATAT
ATACACCATCGTTCCCAGAAGAAACATCAACCAGGCCATTCGCACCCCTCGAGCTCCGGCGGAAGTGCTGCCCGCGCCGT
CCATGTCGACGCCGCCGCAGCCGCCTCCTAGCCTCATCCACATCTGCTGCCTGCACTCGCTCTCCATCGTCCTCCTCCAC
TTCCTCTACGTGATCTCCTGATCCGCCCCCCTCTCCCCATCCAAAGTATAGTAGTGGTAGTAGTGTGTTTCCTT-----C
TACGTTCTTGTTTCCGTACCTTCTTCTTCCTCCGGCTTGCAAGTAAGTACTACGTTCTCCA-------------------
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-----------------------------------------------------------CCGCTCCTGGTACACTGGTAC
ACTTCTAGGAGCGGGAATTACGTACTCTGGTGTGTTTCTGCGTGATACTCTACAACAAATGGAGATGATTCCGCCGGCTG
CGGCGTCGTCGGCGCCACCACGCCATGGCGGCGCGGTCACCGAGGAGGAGCGGCAGCGCAAACGGAAGACCTCAAACCGC
CTCTCAGCGCAGAGGTCTCGCATAAAGAGGCAGCAGCGCGAGGACAATCTGGTCGTGCGCGCGGCCCAGCTCGAGATCGA
CAACAACGCCATGCGTGTCACCACCGCCCTCGTGCAGCAGCAATGCAGCCTGGTCGAGCAGCAGAACCGTGTGCTCTTCG
CAGACGCTCGTTGCCTCTACAGCCTTCTCCAGCAGCAAAACTCCCAGCTCCGCATGCTCGGTCAGATCACCGGCGTTCCG
ATGGACGTGCAGGAAATCCCCGTCCACCTCACGCAGCTGTACGGCGGCCTGCAGACGCCACCGCCGCCGCCCCTGCCCTT
GCCGCCGGAGATTCAGATGATGTTCCAGCCGGAGCAGCTCGATGATATCATGGACGATGCAGGGAGTCTCCCGTGGCTCT
GACTCGGGAGCGTATTA---TCATATTGTGTGTACTGTGATGCGTGTTCGTGTGGTGCTAGTAGT---GTGATGACGTGA
GCTATGGCGTTGGTATGACTGTTGACTTGCACTACTTTTGTTTTGGAACTACGTGAGTTTCTTGTGTGAACTTGTACGTG
TAGTACGTACACAAGAGTGTGATGTGTTGCTCTATAGTACAATATTTGAATAAATAAGTCAAGTTTGTGAAGTTGTGTTG
TTGCACCTGGAATATAACTGAGATGTGTATCTAGCAGATCTCGCAAAATATCTATCTATGGAAAGCCAGTGAGATATCAT
TTCTTAATCGCCTTTTTTTAGCATCAGTACAGACACAAGCGCTCATATACACGCGCATACACTCACCCCTATGAACGCAC
ACACGCACACCCTATCCCTACGAGCACTTCCGAAAGACTGAGCCGGCATATCCCCAACCCACTCAACCACAGGTTGATTC
ACATTTCTTAATCGCCTTCTCTAGTGCATCATTCTTCAGT--AG---TTAGTACTTGGA--------TCTTCTGAAGGCT
CGGTCAAATTTTGCCATCGTCCAATAGCAGATCAACTGACACTCCTTTTGACAATAATTTTTTTTTA---------AAAA
AAATACCGACACTCCTCTTTGTTCAGATTCACAAACACCACTGCATTCTCAAAAATACCGATTGTTT-------------
-------------GTTGCACACAAACGAACAAATTAACGTCCGGTGGTCGCTGCCATCTGATACGGCTGATACGGACGCC
GACGCAACCGATGCTGAGCTGCTGATCGCGAAGTGCTTCTACACCTTAAACAAAGCAGCGACACTCGAGCGTGACTAGAC
GTCGATGCGTGGATGCGTGAGCGTGATGCGGACCGGCAGACTTCGC-GTCTCCTGGCTTGTCGTCACCGCGGGCACCGCG
ACGCCGGGCAGACGGCATGCATCGCTATTCACGGACCAGCCGGGAGGCTTTAATTTGCCTCCGTCGACTTCACCATGCAC
GACGGCGATGGTGGTTTGTTTGTCACCTGGTTTCATCCACTCCATCTGCCGAGCTTTCAGTAAAGAGATTTTTTTT----
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>SNPs
------------------------------------------------------------------------S-------
------------------------------------------------------------S-S-----------------
----------S---------------S---------S-------------------------------------------
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---------------------------------------S------------------SSS-------------------
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-------------------------------------------------------------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S------------
---------------------S--S--S-------------------S---------------------------S----
-----------------S----------S-----------------S-----------------S---------------
-----------------------S--S-------------------------------------------------S---
------------------------------------------------------------------S----------SS-
-S----------S---S-------------------SS---------------SS-------S--S--S-----------
--------------------------------------------------------------S-----------------
---------------------------------S-----------------------------S----------------
-----------S-----SSS-------S--------------------S-------S---S----SSS------------
----------------------------SS----S--S-----------------------------------S------
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SSS-SSSSSS--------------------------S----------------------------------------S-S
-SS-----------------------------------------------------------------------------
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-------------S--------------------------SS------------S----SSSSSSSS-------------
---------------------S--------------------S------------------------SSSSSSSSS---S
-------------S------------------------------------------------------S---S-------
-------SS----S------------------------------------------------------------------
------------------------------------------------------S-------------------------
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----------------------------------------------S---------------------------------
----------------------S---S--------------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_988
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-------GGAGCGGGAATTGCTTAATCC----------------------------------------------------
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>reverse_2672
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-------------------------------AAATCGTTCCAGCCGGGG--------------------
