Multiple sequence alignment - TraesCS4B01G184300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G184300 chr4B 100.000 3784 0 0 1 3784 403620653 403624436 0.000000e+00 6988.0
1 TraesCS4B01G184300 chr4B 83.284 341 36 10 49 368 486263077 486262737 1.030000e-75 294.0
2 TraesCS4B01G184300 chr4B 95.455 88 4 0 3156 3243 46952666 46952579 1.420000e-29 141.0
3 TraesCS4B01G184300 chr4B 96.429 56 2 0 1869 1924 568553055 568553110 4.020000e-15 93.5
4 TraesCS4B01G184300 chr4B 92.424 66 2 2 1858 1920 660419605 660419540 1.450000e-14 91.6
5 TraesCS4B01G184300 chr4B 92.424 66 2 2 1858 1920 660448913 660448848 1.450000e-14 91.6
6 TraesCS4B01G184300 chr4A 92.560 793 40 9 2365 3152 148759449 148758671 0.000000e+00 1120.0
7 TraesCS4B01G184300 chr4A 96.724 580 15 4 895 1472 148762376 148761799 0.000000e+00 963.0
8 TraesCS4B01G184300 chr4A 96.748 369 11 1 1914 2282 148759815 148759448 6.950000e-172 614.0
9 TraesCS4B01G184300 chr4A 92.188 384 23 3 3407 3784 148758477 148758095 1.550000e-148 536.0
10 TraesCS4B01G184300 chr4A 82.828 495 56 18 49 518 88586478 88585988 2.100000e-112 416.0
11 TraesCS4B01G184300 chr4A 91.228 285 24 1 1486 1770 148761571 148761288 1.650000e-103 387.0
12 TraesCS4B01G184300 chr4A 89.444 180 6 8 3242 3411 148758687 148758511 8.230000e-52 215.0
13 TraesCS4B01G184300 chr4A 95.745 94 2 1 1772 1865 148759901 148759810 2.350000e-32 150.0
14 TraesCS4B01G184300 chr4A 92.593 81 5 1 3156 3236 691818264 691818343 8.590000e-22 115.0
15 TraesCS4B01G184300 chr4A 96.154 52 1 1 1 51 148762424 148762373 2.420000e-12 84.2
16 TraesCS4B01G184300 chr4D 92.182 793 41 9 2365 3152 323353267 323354043 0.000000e+00 1101.0
17 TraesCS4B01G184300 chr4D 84.157 587 26 31 3242 3784 323354027 323354590 1.210000e-139 507.0
18 TraesCS4B01G184300 chr4D 96.800 250 5 3 906 1154 323351816 323352063 7.560000e-112 414.0
19 TraesCS4B01G184300 chr4D 87.467 375 19 10 1914 2282 323352916 323353268 1.270000e-109 407.0
20 TraesCS4B01G184300 chr4D 88.102 353 23 11 1531 1865 323352570 323352921 5.890000e-108 401.0
21 TraesCS4B01G184300 chr4D 94.902 255 13 0 1218 1472 323352063 323352317 2.120000e-107 399.0
22 TraesCS4B01G184300 chr6B 81.903 862 108 22 49 890 486998534 486999367 0.000000e+00 684.0
23 TraesCS4B01G184300 chr6B 84.203 671 79 13 49 695 181730990 181731657 8.920000e-176 627.0
24 TraesCS4B01G184300 chr6B 97.727 88 0 2 3418 3503 32295730 32295643 2.350000e-32 150.0
25 TraesCS4B01G184300 chr6B 92.453 106 3 5 3397 3500 32019429 32019327 3.050000e-31 147.0
26 TraesCS4B01G184300 chr6B 95.062 81 3 1 3156 3236 545274759 545274838 3.970000e-25 126.0
27 TraesCS4B01G184300 chr7D 83.104 728 106 12 172 892 19708702 19707985 0.000000e+00 647.0
28 TraesCS4B01G184300 chr2B 80.604 861 113 25 49 893 795458001 795458823 1.930000e-172 616.0
29 TraesCS4B01G184300 chr2B 81.849 584 74 14 49 603 474855577 474854997 2.660000e-126 462.0
30 TraesCS4B01G184300 chr2B 95.455 88 3 1 3156 3243 758599343 758599429 5.100000e-29 139.0
31 TraesCS4B01G184300 chr2B 97.260 73 2 0 3152 3224 797928192 797928120 1.430000e-24 124.0
32 TraesCS4B01G184300 chr3B 81.767 713 95 18 49 732 798121312 798120606 7.100000e-157 564.0
33 TraesCS4B01G184300 chr3B 100.000 86 0 0 2281 2366 644366951 644366866 3.910000e-35 159.0
34 TraesCS4B01G184300 chr3B 92.079 101 7 1 3396 3495 5587443 5587343 1.420000e-29 141.0
35 TraesCS4B01G184300 chr3B 90.625 96 8 1 3147 3242 790580667 790580573 3.970000e-25 126.0
36 TraesCS4B01G184300 chr3B 98.182 55 1 0 1869 1923 723451912 723451858 3.110000e-16 97.1
37 TraesCS4B01G184300 chr7B 79.296 739 122 18 169 889 143250347 143249622 4.390000e-134 488.0
38 TraesCS4B01G184300 chr7B 98.876 89 1 0 2278 2366 65814966 65815054 3.910000e-35 159.0
39 TraesCS4B01G184300 chr7B 98.876 89 1 0 2278 2366 648997991 648998079 3.910000e-35 159.0
40 TraesCS4B01G184300 chr7B 98.214 56 1 0 1869 1924 742761142 742761087 8.650000e-17 99.0
41 TraesCS4B01G184300 chr7A 97.802 91 2 0 2278 2368 558288812 558288722 1.410000e-34 158.0
42 TraesCS4B01G184300 chr5B 96.809 94 3 0 2281 2374 550925092 550925185 1.410000e-34 158.0
43 TraesCS4B01G184300 chr5B 92.784 97 6 1 3147 3243 369259243 369259338 5.100000e-29 139.0
44 TraesCS4B01G184300 chr5B 90.588 85 6 2 3153 3237 609107431 609107513 1.110000e-20 111.0
45 TraesCS4B01G184300 chr2D 95.833 96 4 0 2280 2375 367218185 367218090 5.060000e-34 156.0
46 TraesCS4B01G184300 chr2D 90.000 70 4 3 1857 1924 534617793 534617725 1.870000e-13 87.9
47 TraesCS4B01G184300 chr2D 83.077 65 6 5 284 345 72573296 72573234 2.000000e-03 54.7
48 TraesCS4B01G184300 chr2A 95.833 96 4 0 2281 2376 18339605 18339510 5.060000e-34 156.0
49 TraesCS4B01G184300 chr2A 86.765 68 4 4 49 113 158182985 158183050 1.890000e-08 71.3
50 TraesCS4B01G184300 chr2A 85.507 69 1 3 253 312 20961526 20961594 3.160000e-06 63.9
51 TraesCS4B01G184300 chr2A 80.682 88 7 2 235 312 19750502 19750589 4.080000e-05 60.2
52 TraesCS4B01G184300 chr2A 80.682 88 7 2 235 312 19783361 19783448 4.080000e-05 60.2
53 TraesCS4B01G184300 chr2A 80.682 88 7 2 235 312 19816822 19816909 4.080000e-05 60.2
54 TraesCS4B01G184300 chr1B 95.876 97 2 2 2276 2371 648097846 648097751 5.060000e-34 156.0
55 TraesCS4B01G184300 chr1B 95.000 80 3 1 3157 3236 578353157 578353079 1.430000e-24 124.0
56 TraesCS4B01G184300 chr1B 93.333 45 2 1 285 328 657498324 657498368 8.770000e-07 65.8
57 TraesCS4B01G184300 chr1B 88.235 51 4 2 284 333 142528500 142528451 4.080000e-05 60.2
58 TraesCS4B01G184300 chr6A 94.000 100 4 2 2267 2366 152063019 152063116 2.350000e-32 150.0
59 TraesCS4B01G184300 chr6A 96.629 89 3 0 3408 3496 18580880 18580792 8.470000e-32 148.0
60 TraesCS4B01G184300 chr6A 87.500 136 7 9 3384 3512 520853728 520853860 8.470000e-32 148.0
61 TraesCS4B01G184300 chr3A 91.071 112 6 3 3404 3515 25367993 25368100 8.470000e-32 148.0
62 TraesCS4B01G184300 chr3A 93.939 99 0 5 3417 3513 8598777 8598683 1.100000e-30 145.0
63 TraesCS4B01G184300 chrUn 98.214 56 1 0 1869 1924 334694384 334694439 8.650000e-17 99.0
64 TraesCS4B01G184300 chrUn 98.214 56 1 0 1869 1924 335122587 335122532 8.650000e-17 99.0
65 TraesCS4B01G184300 chrUn 80.682 88 7 2 235 312 417931203 417931290 4.080000e-05 60.2
66 TraesCS4B01G184300 chr5A 93.548 62 3 1 1869 1929 443220300 443220239 1.450000e-14 91.6
67 TraesCS4B01G184300 chr5A 100.000 28 0 0 296 323 568698639 568698612 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G184300 chr4B 403620653 403624436 3783 False 6988.000000 6988 100.000000 1 3784 1 chr4B.!!$F1 3783
1 TraesCS4B01G184300 chr4A 148758095 148762424 4329 True 508.650000 1120 93.848875 1 3784 8 chr4A.!!$R2 3783
2 TraesCS4B01G184300 chr4D 323351816 323354590 2774 False 538.166667 1101 90.601667 906 3784 6 chr4D.!!$F1 2878
3 TraesCS4B01G184300 chr6B 486998534 486999367 833 False 684.000000 684 81.903000 49 890 1 chr6B.!!$F2 841
4 TraesCS4B01G184300 chr6B 181730990 181731657 667 False 627.000000 627 84.203000 49 695 1 chr6B.!!$F1 646
5 TraesCS4B01G184300 chr7D 19707985 19708702 717 True 647.000000 647 83.104000 172 892 1 chr7D.!!$R1 720
6 TraesCS4B01G184300 chr2B 795458001 795458823 822 False 616.000000 616 80.604000 49 893 1 chr2B.!!$F2 844
7 TraesCS4B01G184300 chr2B 474854997 474855577 580 True 462.000000 462 81.849000 49 603 1 chr2B.!!$R1 554
8 TraesCS4B01G184300 chr3B 798120606 798121312 706 True 564.000000 564 81.767000 49 732 1 chr3B.!!$R5 683
9 TraesCS4B01G184300 chr7B 143249622 143250347 725 True 488.000000 488 79.296000 169 889 1 chr7B.!!$R1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 876 0.767375 ACTCCCGATCATTGGATGGG 59.233 55.0 0.0 0.0 45.97 4.00 F
1600 1885 1.260544 AAGCCTGTCAAATTCCCTGC 58.739 50.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 3578 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
2806 4500 0.036164 AGTAATGCTCGGTGTTGGCA 59.964 50.0 0.00 0.0 40.32 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 257 7.701445 CATAGACAATGTTTCAGGAATCCTTC 58.299 38.462 0.00 0.00 0.00 3.46
228 260 5.388654 ACAATGTTTCAGGAATCCTTCTGT 58.611 37.500 0.00 0.00 33.13 3.41
284 316 1.002430 AGATGATGTCGCAACACCACT 59.998 47.619 0.00 0.00 38.48 4.00
324 366 2.948979 TCCGTCATTGTTGCAGAAACTT 59.051 40.909 0.00 0.00 39.70 2.66
406 457 4.699522 GCGGTTCAGGCGGAGGTT 62.700 66.667 0.00 0.00 0.00 3.50
434 485 3.071206 AGCGACGCTCCTGGACAT 61.071 61.111 18.46 0.00 30.62 3.06
445 497 0.972983 CCTGGACATCAGACGAGGGT 60.973 60.000 0.00 0.00 46.18 4.34
460 512 4.830765 GGTATGTGCGCGGAGGCA 62.831 66.667 8.83 0.00 41.45 4.75
514 569 2.124151 ATGGCGGAATCTGGTGGC 60.124 61.111 0.00 0.00 0.00 5.01
550 605 5.565509 TGGCAACAGTTGTTTATGGATCTA 58.434 37.500 14.88 0.00 46.17 1.98
567 622 8.783660 ATGGATCTATAACTAGTTGAGTCCAA 57.216 34.615 25.82 18.04 37.44 3.53
578 633 2.526873 AGTCCAAGAGGCCACCGT 60.527 61.111 5.01 0.00 33.74 4.83
606 661 1.362717 CTTGGTCGTCGTCACCACT 59.637 57.895 5.35 0.00 43.93 4.00
632 689 3.303135 TCTGCGTCCGCTTGTCCT 61.303 61.111 13.31 0.00 42.51 3.85
666 723 2.146342 CGATGCCAATGTAGGATCCAC 58.854 52.381 15.82 10.72 0.00 4.02
682 739 4.680537 ACCCGCCGTCACTCTCCT 62.681 66.667 0.00 0.00 0.00 3.69
691 748 1.134965 CGTCACTCTCCTCAATCCCAC 60.135 57.143 0.00 0.00 0.00 4.61
696 753 1.221840 CTCCTCAATCCCACCCACG 59.778 63.158 0.00 0.00 0.00 4.94
697 754 1.229368 TCCTCAATCCCACCCACGA 60.229 57.895 0.00 0.00 0.00 4.35
748 805 6.498304 CAACAAATGACTAGTTGCAGTCTTT 58.502 36.000 0.00 3.01 44.41 2.52
762 819 6.455360 TGCAGTCTTTCTTTCTGAAACAAT 57.545 33.333 0.00 0.00 39.50 2.71
773 831 3.897239 TCTGAAACAATGGTGGAGTTGT 58.103 40.909 0.00 0.00 40.06 3.32
776 834 5.888724 TCTGAAACAATGGTGGAGTTGTAAA 59.111 36.000 0.00 0.00 37.56 2.01
794 852 9.802039 AGTTGTAAAAATATGAAGTAGGTGGAA 57.198 29.630 0.00 0.00 0.00 3.53
817 875 1.417517 TGACTCCCGATCATTGGATGG 59.582 52.381 0.00 0.00 32.67 3.51
818 876 0.767375 ACTCCCGATCATTGGATGGG 59.233 55.000 0.00 0.00 45.97 4.00
852 910 4.003788 CAAGGAGGCGGTGGACGT 62.004 66.667 0.00 0.00 46.52 4.34
854 912 2.814835 AAGGAGGCGGTGGACGTTT 61.815 57.895 0.00 0.00 46.52 3.60
864 922 2.030628 CGGTGGACGTTTGCCTAAAATT 60.031 45.455 0.00 0.00 37.93 1.82
893 951 5.230182 GTTGAAGGCAAACATTTCCCTTAG 58.770 41.667 0.00 0.00 37.78 2.18
894 952 4.735369 TGAAGGCAAACATTTCCCTTAGA 58.265 39.130 0.00 0.00 37.78 2.10
1149 1209 3.849911 CTGGCTCGTCAGTATTTTCTCA 58.150 45.455 0.00 0.00 0.00 3.27
1188 1248 4.400251 CCTCCCCACCTCCGACCT 62.400 72.222 0.00 0.00 0.00 3.85
1346 1406 3.100817 CGTGACTTTTTGCACTGACTTG 58.899 45.455 0.00 0.00 32.98 3.16
1394 1454 4.950050 TCTGTGGTCTGAGAAGAAGAAAC 58.050 43.478 0.00 0.00 0.00 2.78
1401 1461 4.991687 GTCTGAGAAGAAGAAACGATGGTT 59.008 41.667 0.00 0.00 38.22 3.67
1405 1465 4.714632 AGAAGAAGAAACGATGGTTTGGA 58.285 39.130 10.82 0.00 46.04 3.53
1476 1543 4.752146 CAAGATTTGGGGAGATTTTGCTC 58.248 43.478 0.00 0.00 0.00 4.26
1507 1791 6.330004 TCAGAATTTGCTGCTCAATTAACA 57.670 33.333 0.00 0.00 35.86 2.41
1522 1806 9.956720 GCTCAATTAACAATAATGCTATCTTGT 57.043 29.630 0.00 0.00 32.06 3.16
1536 1820 7.531857 TGCTATCTTGTTTTTGGTAATTGGA 57.468 32.000 0.00 0.00 0.00 3.53
1557 1841 4.550422 GAGAATGTTGGACCTTCTTTTGC 58.450 43.478 0.00 0.00 34.06 3.68
1572 1856 2.727103 TTGCCAGGCAACAGTAACC 58.273 52.632 23.88 0.00 43.99 2.85
1584 1868 2.779506 ACAGTAACCAGGCAGTTAAGC 58.220 47.619 2.20 0.00 34.13 3.09
1597 1882 3.367395 GCAGTTAAGCCTGTCAAATTCCC 60.367 47.826 0.00 0.00 34.84 3.97
1598 1883 4.082125 CAGTTAAGCCTGTCAAATTCCCT 58.918 43.478 0.00 0.00 0.00 4.20
1599 1884 4.082125 AGTTAAGCCTGTCAAATTCCCTG 58.918 43.478 0.00 0.00 0.00 4.45
1600 1885 1.260544 AAGCCTGTCAAATTCCCTGC 58.739 50.000 0.00 0.00 0.00 4.85
1680 1965 3.369756 GCGATTTCCTGTCATGTTTACGA 59.630 43.478 0.00 0.00 0.00 3.43
1686 1971 3.438781 TCCTGTCATGTTTACGAAATGCC 59.561 43.478 0.00 0.00 0.00 4.40
1691 1976 2.645730 TGTTTACGAAATGCCATGCC 57.354 45.000 0.00 0.00 0.00 4.40
1757 2042 4.092091 GCACAGAGAAGGAACAATACTTCG 59.908 45.833 0.00 0.00 45.83 3.79
1770 2071 6.488769 ACAATACTTCGTGGGGAATGTATA 57.511 37.500 0.00 0.00 33.01 1.47
1865 3549 7.527568 AGGGTATTACTCTGCATTAGTACTC 57.472 40.000 0.00 1.79 0.00 2.59
1866 3550 7.067421 AGGGTATTACTCTGCATTAGTACTCA 58.933 38.462 0.00 0.00 0.00 3.41
1867 3551 7.730784 AGGGTATTACTCTGCATTAGTACTCAT 59.269 37.037 0.00 0.00 0.00 2.90
1868 3552 9.021807 GGGTATTACTCTGCATTAGTACTCATA 57.978 37.037 0.00 3.15 0.00 2.15
1872 3556 6.597832 ACTCTGCATTAGTACTCATATCCC 57.402 41.667 0.00 0.00 0.00 3.85
1873 3557 6.318913 ACTCTGCATTAGTACTCATATCCCT 58.681 40.000 0.00 0.00 0.00 4.20
1874 3558 6.784969 ACTCTGCATTAGTACTCATATCCCTT 59.215 38.462 0.00 0.00 0.00 3.95
1875 3559 7.291182 ACTCTGCATTAGTACTCATATCCCTTT 59.709 37.037 0.00 0.00 0.00 3.11
1876 3560 8.034313 TCTGCATTAGTACTCATATCCCTTTT 57.966 34.615 0.00 0.00 0.00 2.27
1877 3561 8.494433 TCTGCATTAGTACTCATATCCCTTTTT 58.506 33.333 0.00 0.00 0.00 1.94
1878 3562 9.778741 CTGCATTAGTACTCATATCCCTTTTTA 57.221 33.333 0.00 0.00 0.00 1.52
1888 3572 9.713684 ACTCATATCCCTTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
1893 3577 7.789202 TCCCTTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
1894 3578 8.200024 TCCCTTTTTATCCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
1895 3579 8.313292 TCCCTTTTTATCCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
1896 3580 8.096414 CCCTTTTTATCCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
1903 3587 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
1904 3588 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
1905 3589 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
1906 3590 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1907 3591 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1908 3592 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1909 3593 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1910 3594 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1911 3595 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1912 3596 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1913 3597 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1914 3598 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1915 3599 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1916 3600 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1917 3601 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
1918 3602 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
1919 3603 1.379576 CCGGACGGAGGGAGTACTT 60.380 63.158 4.40 0.00 37.50 2.24
1920 3604 1.664321 CCGGACGGAGGGAGTACTTG 61.664 65.000 4.40 0.00 37.50 3.16
1921 3605 1.664321 CGGACGGAGGGAGTACTTGG 61.664 65.000 0.00 0.00 0.00 3.61
1924 3608 1.747924 GACGGAGGGAGTACTTGGTAC 59.252 57.143 0.00 0.12 39.10 3.34
1934 3618 2.564062 AGTACTTGGTACTTGGCGCTTA 59.436 45.455 7.64 0.00 45.68 3.09
1939 3623 2.088423 TGGTACTTGGCGCTTAATTGG 58.912 47.619 7.64 0.00 0.00 3.16
1961 3645 4.352887 GTGCTAGTTAGATTCAGACGTCC 58.647 47.826 13.01 0.00 0.00 4.79
2016 3700 2.134789 AAGATCAATCCCACAGTGGC 57.865 50.000 14.98 0.00 35.79 5.01
2022 3706 1.004745 CAATCCCACAGTGGCTACCTT 59.995 52.381 14.98 0.00 35.79 3.50
2032 3716 2.832733 AGTGGCTACCTTTACTCCTGTC 59.167 50.000 0.00 0.00 0.00 3.51
2036 3720 3.445096 GGCTACCTTTACTCCTGTCGTTA 59.555 47.826 0.00 0.00 0.00 3.18
2282 3968 4.202131 CGGTATTTCTCCCCTCAGTTCTAC 60.202 50.000 0.00 0.00 0.00 2.59
2283 3969 4.963628 GGTATTTCTCCCCTCAGTTCTACT 59.036 45.833 0.00 0.00 0.00 2.57
2284 3970 5.069383 GGTATTTCTCCCCTCAGTTCTACTC 59.931 48.000 0.00 0.00 0.00 2.59
2285 3971 2.830651 TCTCCCCTCAGTTCTACTCC 57.169 55.000 0.00 0.00 0.00 3.85
2286 3972 1.288335 TCTCCCCTCAGTTCTACTCCC 59.712 57.143 0.00 0.00 0.00 4.30
2287 3973 1.289530 CTCCCCTCAGTTCTACTCCCT 59.710 57.143 0.00 0.00 0.00 4.20
2288 3974 1.288335 TCCCCTCAGTTCTACTCCCTC 59.712 57.143 0.00 0.00 0.00 4.30
2289 3975 1.689892 CCCCTCAGTTCTACTCCCTCC 60.690 61.905 0.00 0.00 0.00 4.30
2290 3976 1.394618 CCTCAGTTCTACTCCCTCCG 58.605 60.000 0.00 0.00 0.00 4.63
2291 3977 1.341187 CCTCAGTTCTACTCCCTCCGT 60.341 57.143 0.00 0.00 0.00 4.69
2292 3978 2.448453 CTCAGTTCTACTCCCTCCGTT 58.552 52.381 0.00 0.00 0.00 4.44
2293 3979 2.424246 CTCAGTTCTACTCCCTCCGTTC 59.576 54.545 0.00 0.00 0.00 3.95
2294 3980 1.477295 CAGTTCTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
2295 3981 1.076677 AGTTCTACTCCCTCCGTTCCA 59.923 52.381 0.00 0.00 0.00 3.53
2296 3982 1.897802 GTTCTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
2297 3983 2.301009 GTTCTACTCCCTCCGTTCCAAA 59.699 50.000 0.00 0.00 0.00 3.28
2298 3984 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
2299 3985 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
2300 3986 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
2301 3987 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2302 3988 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2303 3989 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2304 3990 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2305 3991 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2306 3992 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2307 3993 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2308 3994 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2309 3995 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2310 3996 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2311 3997 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2312 3998 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2313 3999 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2314 4000 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2315 4001 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2316 4002 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2317 4003 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2318 4004 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2319 4005 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2320 4006 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2321 4007 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2322 4008 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
2323 4009 9.975218 AATAGATGACCCAACTTTGTACTAAAT 57.025 29.630 0.00 0.00 0.00 1.40
2324 4010 9.975218 ATAGATGACCCAACTTTGTACTAAATT 57.025 29.630 0.00 0.00 0.00 1.82
2325 4011 8.706322 AGATGACCCAACTTTGTACTAAATTT 57.294 30.769 0.00 0.00 0.00 1.82
2326 4012 9.802039 AGATGACCCAACTTTGTACTAAATTTA 57.198 29.630 0.00 0.00 0.00 1.40
2352 4038 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2353 4039 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2354 4040 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2355 4041 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2356 4042 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2357 4043 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2358 4044 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2359 4045 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2360 4046 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2361 4047 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2362 4048 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2363 4049 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2364 4050 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2365 4051 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2694 4388 4.601315 CGAATGCGCCACATGATG 57.399 55.556 4.18 0.00 39.60 3.07
2695 4389 1.723273 CGAATGCGCCACATGATGT 59.277 52.632 4.18 0.00 39.60 3.06
2698 4392 0.889994 AATGCGCCACATGATGTTGT 59.110 45.000 4.18 0.00 39.60 3.32
2711 4405 5.589855 ACATGATGTTGTTGTTGTCAAGAGA 59.410 36.000 0.00 0.00 33.97 3.10
2723 4417 0.901124 TCAAGAGAGCTGAAGAGGCC 59.099 55.000 0.00 0.00 0.00 5.19
2730 4424 2.083002 GAGCTGAAGAGGCCTTTCTTG 58.917 52.381 20.96 16.25 37.53 3.02
2806 4500 3.418675 CGACTACATCGTGCCAACT 57.581 52.632 0.00 0.00 46.25 3.16
2807 4501 0.992072 CGACTACATCGTGCCAACTG 59.008 55.000 0.00 0.00 46.25 3.16
2810 4504 0.673333 CTACATCGTGCCAACTGCCA 60.673 55.000 0.00 0.00 40.16 4.92
2811 4505 0.250510 TACATCGTGCCAACTGCCAA 60.251 50.000 0.00 0.00 40.16 4.52
2812 4506 1.081242 CATCGTGCCAACTGCCAAC 60.081 57.895 0.00 0.00 40.16 3.77
2813 4507 1.528076 ATCGTGCCAACTGCCAACA 60.528 52.632 0.00 0.00 40.16 3.33
2814 4508 1.795170 ATCGTGCCAACTGCCAACAC 61.795 55.000 0.00 0.00 40.16 3.32
2815 4509 2.417097 GTGCCAACTGCCAACACC 59.583 61.111 0.00 0.00 40.16 4.16
2816 4510 3.215568 TGCCAACTGCCAACACCG 61.216 61.111 0.00 0.00 40.16 4.94
2817 4511 2.904866 GCCAACTGCCAACACCGA 60.905 61.111 0.00 0.00 0.00 4.69
2840 4534 6.861572 CGAGCATTACTTGGACGAAATAGATA 59.138 38.462 0.00 0.00 0.00 1.98
2858 4552 1.836999 TACCGCAGTGGGTTCAGCAT 61.837 55.000 4.64 0.00 44.64 3.79
2886 4580 4.289672 ACTGTCATTTCCCCTGTATCTTGT 59.710 41.667 0.00 0.00 0.00 3.16
2895 4589 4.597507 TCCCCTGTATCTTGTTTTCTCTGT 59.402 41.667 0.00 0.00 0.00 3.41
2927 4621 6.239008 CCGTGCAATAACCTGGATGAAATAAT 60.239 38.462 0.00 0.00 0.00 1.28
2972 4666 7.637709 AAACCTCGATTGCACTTTATTTTTC 57.362 32.000 0.00 0.00 0.00 2.29
2979 4673 6.032042 CGATTGCACTTTATTTTTCCACGTAC 59.968 38.462 0.00 0.00 0.00 3.67
3017 4711 3.713826 ACACCGTGGAATTACTTGGAT 57.286 42.857 3.03 0.00 0.00 3.41
3036 4730 7.888021 ACTTGGATGGTATAGATGTTTTTGTCA 59.112 33.333 0.00 0.00 0.00 3.58
3076 4770 3.121030 CTGGAAACCTCGGCTGCG 61.121 66.667 0.00 0.00 0.00 5.18
3097 4791 4.505191 GCGCTGTCGGTATAGATGTTTTTA 59.495 41.667 0.00 0.00 35.95 1.52
3148 4842 5.726980 TGGATTCCCAAGAACTTTTGATG 57.273 39.130 0.00 0.00 40.09 3.07
3149 4843 5.147032 TGGATTCCCAAGAACTTTTGATGT 58.853 37.500 0.00 0.00 40.09 3.06
3150 4844 6.310941 TGGATTCCCAAGAACTTTTGATGTA 58.689 36.000 0.00 0.00 40.09 2.29
3151 4845 6.953520 TGGATTCCCAAGAACTTTTGATGTAT 59.046 34.615 0.00 0.00 40.09 2.29
3152 4846 7.454380 TGGATTCCCAAGAACTTTTGATGTATT 59.546 33.333 0.00 0.00 40.09 1.89
3153 4847 8.314021 GGATTCCCAAGAACTTTTGATGTATTT 58.686 33.333 0.00 0.00 33.97 1.40
3154 4848 9.710900 GATTCCCAAGAACTTTTGATGTATTTT 57.289 29.630 0.00 0.00 33.97 1.82
3179 4873 4.503741 TTTTTGATCAAAGAAGGGCTCG 57.496 40.909 19.64 0.00 0.00 5.03
3180 4874 1.453155 TTGATCAAAGAAGGGCTCGC 58.547 50.000 5.45 0.00 0.00 5.03
3181 4875 0.392998 TGATCAAAGAAGGGCTCGCC 60.393 55.000 0.00 0.00 0.00 5.54
3191 4885 4.176752 GGCTCGCCCCTTCCGATT 62.177 66.667 0.00 0.00 33.83 3.34
3192 4886 2.124695 GCTCGCCCCTTCCGATTT 60.125 61.111 0.00 0.00 33.83 2.17
3193 4887 1.749258 GCTCGCCCCTTCCGATTTT 60.749 57.895 0.00 0.00 33.83 1.82
3194 4888 1.715862 GCTCGCCCCTTCCGATTTTC 61.716 60.000 0.00 0.00 33.83 2.29
3195 4889 0.392461 CTCGCCCCTTCCGATTTTCA 60.392 55.000 0.00 0.00 33.83 2.69
3196 4890 0.254747 TCGCCCCTTCCGATTTTCAT 59.745 50.000 0.00 0.00 0.00 2.57
3197 4891 1.102978 CGCCCCTTCCGATTTTCATT 58.897 50.000 0.00 0.00 0.00 2.57
3198 4892 2.092861 TCGCCCCTTCCGATTTTCATTA 60.093 45.455 0.00 0.00 0.00 1.90
3199 4893 2.032924 CGCCCCTTCCGATTTTCATTAC 59.967 50.000 0.00 0.00 0.00 1.89
3200 4894 3.288092 GCCCCTTCCGATTTTCATTACT 58.712 45.455 0.00 0.00 0.00 2.24
3201 4895 3.066760 GCCCCTTCCGATTTTCATTACTG 59.933 47.826 0.00 0.00 0.00 2.74
3202 4896 4.523083 CCCCTTCCGATTTTCATTACTGA 58.477 43.478 0.00 0.00 0.00 3.41
3203 4897 4.947388 CCCCTTCCGATTTTCATTACTGAA 59.053 41.667 0.00 0.00 39.62 3.02
3204 4898 5.417580 CCCCTTCCGATTTTCATTACTGAAA 59.582 40.000 4.26 4.26 46.92 2.69
3216 4910 7.883391 TTCATTACTGAAAACCAACCTTACA 57.117 32.000 0.00 0.00 38.43 2.41
3217 4911 8.472007 TTCATTACTGAAAACCAACCTTACAT 57.528 30.769 0.00 0.00 38.43 2.29
3218 4912 9.575868 TTCATTACTGAAAACCAACCTTACATA 57.424 29.630 0.00 0.00 38.43 2.29
3219 4913 9.575868 TCATTACTGAAAACCAACCTTACATAA 57.424 29.630 0.00 0.00 0.00 1.90
3223 4917 8.472007 ACTGAAAACCAACCTTACATAATTCA 57.528 30.769 0.00 0.00 0.00 2.57
3224 4918 9.088987 ACTGAAAACCAACCTTACATAATTCAT 57.911 29.630 0.00 0.00 0.00 2.57
3228 4922 9.762381 AAAACCAACCTTACATAATTCATAGGA 57.238 29.630 0.00 0.00 0.00 2.94
3229 4923 8.747538 AACCAACCTTACATAATTCATAGGAC 57.252 34.615 0.00 0.00 0.00 3.85
3230 4924 7.867921 ACCAACCTTACATAATTCATAGGACA 58.132 34.615 0.00 0.00 0.00 4.02
3231 4925 7.993183 ACCAACCTTACATAATTCATAGGACAG 59.007 37.037 0.00 0.00 0.00 3.51
3232 4926 8.210946 CCAACCTTACATAATTCATAGGACAGA 58.789 37.037 0.00 0.00 0.00 3.41
3233 4927 9.046296 CAACCTTACATAATTCATAGGACAGAC 57.954 37.037 0.00 0.00 0.00 3.51
3234 4928 8.319057 ACCTTACATAATTCATAGGACAGACA 57.681 34.615 0.00 0.00 0.00 3.41
3235 4929 8.424918 ACCTTACATAATTCATAGGACAGACAG 58.575 37.037 0.00 0.00 0.00 3.51
3236 4930 7.386299 CCTTACATAATTCATAGGACAGACAGC 59.614 40.741 0.00 0.00 0.00 4.40
3237 4931 5.292765 ACATAATTCATAGGACAGACAGCG 58.707 41.667 0.00 0.00 0.00 5.18
3238 4932 2.231215 ATTCATAGGACAGACAGCGC 57.769 50.000 0.00 0.00 0.00 5.92
3239 4933 0.894835 TTCATAGGACAGACAGCGCA 59.105 50.000 11.47 0.00 0.00 6.09
3240 4934 0.894835 TCATAGGACAGACAGCGCAA 59.105 50.000 11.47 0.00 0.00 4.85
3241 4935 1.275010 TCATAGGACAGACAGCGCAAA 59.725 47.619 11.47 0.00 0.00 3.68
3242 4936 2.076100 CATAGGACAGACAGCGCAAAA 58.924 47.619 11.47 0.00 0.00 2.44
3243 4937 1.795768 TAGGACAGACAGCGCAAAAG 58.204 50.000 11.47 0.00 0.00 2.27
3244 4938 0.106708 AGGACAGACAGCGCAAAAGA 59.893 50.000 11.47 0.00 0.00 2.52
3245 4939 0.944386 GGACAGACAGCGCAAAAGAA 59.056 50.000 11.47 0.00 0.00 2.52
3246 4940 1.334149 GGACAGACAGCGCAAAAGAAC 60.334 52.381 11.47 0.00 0.00 3.01
3336 5036 3.738830 ACCAGTTGCTAAGTACGTCAA 57.261 42.857 0.00 0.00 0.00 3.18
3337 5037 4.267349 ACCAGTTGCTAAGTACGTCAAT 57.733 40.909 0.00 0.00 0.00 2.57
3338 5038 5.395682 ACCAGTTGCTAAGTACGTCAATA 57.604 39.130 0.00 0.00 0.00 1.90
3339 5039 5.974108 ACCAGTTGCTAAGTACGTCAATAT 58.026 37.500 0.00 0.00 0.00 1.28
3340 5040 5.810587 ACCAGTTGCTAAGTACGTCAATATG 59.189 40.000 0.00 0.00 0.00 1.78
3341 5041 6.040247 CCAGTTGCTAAGTACGTCAATATGA 58.960 40.000 0.00 0.00 0.00 2.15
3344 5044 4.940463 TGCTAAGTACGTCAATATGACCC 58.060 43.478 0.00 0.00 44.20 4.46
3349 5049 6.474140 AAGTACGTCAATATGACCCACATA 57.526 37.500 0.00 0.00 44.20 2.29
3406 5109 6.493189 AAAGCAAAGGGGAAAAACAGATTA 57.507 33.333 0.00 0.00 0.00 1.75
3501 5243 1.511850 CGCCACTCTGATTTGTGTGA 58.488 50.000 0.00 0.00 34.51 3.58
3506 5248 4.497006 GCCACTCTGATTTGTGTGATATGC 60.497 45.833 0.00 0.00 34.51 3.14
3507 5249 4.880120 CCACTCTGATTTGTGTGATATGCT 59.120 41.667 0.00 0.00 34.51 3.79
3517 5259 5.739752 TGTGTGATATGCTATTGAAGTGC 57.260 39.130 0.00 0.00 0.00 4.40
3518 5260 5.184711 TGTGTGATATGCTATTGAAGTGCA 58.815 37.500 0.00 0.00 41.13 4.57
3519 5261 5.065090 TGTGTGATATGCTATTGAAGTGCAC 59.935 40.000 9.40 9.40 39.63 4.57
3523 5265 6.483307 GTGATATGCTATTGAAGTGCACCTTA 59.517 38.462 14.63 0.00 39.63 2.69
3629 5379 6.371548 ACAAACAAATCTCTGCTCGCTTTATA 59.628 34.615 0.00 0.00 0.00 0.98
3675 5426 1.026584 ACCAAACTTACACGCCCAAC 58.973 50.000 0.00 0.00 0.00 3.77
3748 5499 2.042831 GCAATGGCAGAAGACGGCT 61.043 57.895 0.00 0.00 40.72 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.164122 ACATTGATGAGTGTCTTATCTTGTGT 58.836 34.615 0.00 3.64 29.89 3.72
47 48 4.116747 TGTTTCCGCAACAAGACATTTT 57.883 36.364 0.00 0.00 42.76 1.82
162 184 9.129209 GTGAATATGTTTTCTTTCTACCTTTGC 57.871 33.333 0.00 0.00 0.00 3.68
225 257 5.375417 TTGCAACATCATCCTTGTTACAG 57.625 39.130 0.00 0.00 35.61 2.74
361 403 1.127571 CGTGCGTGCAATTGGAATCG 61.128 55.000 7.72 6.59 0.00 3.34
434 485 1.807226 CGCACATACCCTCGTCTGA 59.193 57.895 0.00 0.00 0.00 3.27
460 512 3.850098 CTGCCACCGGGAACTTGCT 62.850 63.158 6.32 0.00 35.59 3.91
542 597 8.783660 TTGGACTCAACTAGTTATAGATCCAT 57.216 34.615 23.61 8.41 39.07 3.41
550 605 4.162509 GGCCTCTTGGACTCAACTAGTTAT 59.837 45.833 8.04 0.00 39.07 1.89
578 633 0.313043 GACGACCAAGTCTCCGTTGA 59.687 55.000 0.00 0.00 38.09 3.18
621 678 2.656069 GCCTACCAGGACAAGCGGA 61.656 63.158 0.00 0.00 37.67 5.54
632 689 2.758327 ATCGTCGCAGGCCTACCA 60.758 61.111 3.98 0.00 39.06 3.25
654 711 2.507854 CGGCGGGTGGATCCTACAT 61.508 63.158 14.23 0.00 36.25 2.29
666 723 3.827898 GAGGAGAGTGACGGCGGG 61.828 72.222 13.24 0.00 0.00 6.13
682 739 1.676968 CTGTCGTGGGTGGGATTGA 59.323 57.895 0.00 0.00 0.00 2.57
691 748 1.409427 GGAGTTAGATCCTGTCGTGGG 59.591 57.143 0.00 0.00 36.35 4.61
696 753 1.682323 GACGGGGAGTTAGATCCTGTC 59.318 57.143 5.01 5.01 45.90 3.51
697 754 1.688627 GGACGGGGAGTTAGATCCTGT 60.689 57.143 0.00 0.00 42.35 4.00
748 805 4.792068 ACTCCACCATTGTTTCAGAAAGA 58.208 39.130 0.00 0.00 0.00 2.52
762 819 9.226606 CTACTTCATATTTTTACAACTCCACCA 57.773 33.333 0.00 0.00 0.00 4.17
776 834 7.690256 AGTCAACTTCCACCTACTTCATATTT 58.310 34.615 0.00 0.00 0.00 1.40
794 852 2.187958 TCCAATGATCGGGAGTCAACT 58.812 47.619 0.00 0.00 0.00 3.16
817 875 0.107214 TGCTCATCGGATTGGTTCCC 60.107 55.000 0.00 0.00 42.06 3.97
818 876 1.672881 CTTGCTCATCGGATTGGTTCC 59.327 52.381 0.00 0.00 41.59 3.62
833 891 4.021925 GTCCACCGCCTCCTTGCT 62.022 66.667 0.00 0.00 0.00 3.91
852 910 3.637229 TCAACCGACCAATTTTAGGCAAA 59.363 39.130 0.00 0.00 0.00 3.68
854 912 2.865079 TCAACCGACCAATTTTAGGCA 58.135 42.857 0.00 0.00 0.00 4.75
864 922 0.394488 TGTTTGCCTTCAACCGACCA 60.394 50.000 0.00 0.00 30.75 4.02
933 992 2.875933 GACATGGAGTTTCGGTGAACAA 59.124 45.455 0.00 0.00 31.94 2.83
1149 1209 0.687427 GGAGCCTGAGGAGAGAAGCT 60.687 60.000 0.65 0.00 0.00 3.74
1172 1232 2.760385 GAGGTCGGAGGTGGGGAG 60.760 72.222 0.00 0.00 0.00 4.30
1178 1238 4.716977 GGGGTGGAGGTCGGAGGT 62.717 72.222 0.00 0.00 0.00 3.85
1188 1248 2.100525 GAAATTGGGGGTGGGGTGGA 62.101 60.000 0.00 0.00 0.00 4.02
1346 1406 7.110155 AGTAGCTCTATTAGTCTAGCTCATCC 58.890 42.308 8.26 0.00 43.96 3.51
1394 1454 2.017049 GAAGTCCCATCCAAACCATCG 58.983 52.381 0.00 0.00 0.00 3.84
1401 1461 2.852449 AGCCTTATGAAGTCCCATCCAA 59.148 45.455 0.00 0.00 0.00 3.53
1405 1465 4.298626 TCAGTAGCCTTATGAAGTCCCAT 58.701 43.478 0.00 0.00 0.00 4.00
1522 1806 7.213678 GTCCAACATTCTCCAATTACCAAAAA 58.786 34.615 0.00 0.00 0.00 1.94
1557 1841 1.244019 GCCTGGTTACTGTTGCCTGG 61.244 60.000 16.36 16.36 42.20 4.45
1584 1868 1.542915 CACAGCAGGGAATTTGACAGG 59.457 52.381 0.00 0.00 0.00 4.00
1597 1882 0.320683 TGACCACGGAATCACAGCAG 60.321 55.000 0.00 0.00 0.00 4.24
1598 1883 0.107643 TTGACCACGGAATCACAGCA 59.892 50.000 0.00 0.00 0.00 4.41
1599 1884 0.798776 CTTGACCACGGAATCACAGC 59.201 55.000 0.00 0.00 0.00 4.40
1600 1885 1.442769 CCTTGACCACGGAATCACAG 58.557 55.000 0.00 0.00 0.00 3.66
1680 1965 4.622260 AGTAACAAAAGGCATGGCATTT 57.378 36.364 22.64 19.00 44.36 2.32
1686 1971 5.925397 TGTAATGCAAGTAACAAAAGGCATG 59.075 36.000 0.00 0.00 40.74 4.06
1729 2014 3.049708 TGTTCCTTCTCTGTGCATCAG 57.950 47.619 9.27 9.27 44.85 2.90
1867 3551 9.486123 TGTCATCAAAATGGATAAAAAGGGATA 57.514 29.630 0.00 0.00 33.42 2.59
1868 3552 8.378115 TGTCATCAAAATGGATAAAAAGGGAT 57.622 30.769 0.00 0.00 33.42 3.85
1869 3553 7.789202 TGTCATCAAAATGGATAAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
1877 3561 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
1878 3562 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
1879 3563 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
1880 3564 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
1881 3565 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
1882 3566 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1883 3567 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1884 3568 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1885 3569 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1886 3570 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1887 3571 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1888 3572 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1889 3573 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1890 3574 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1891 3575 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1892 3576 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1893 3577 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1894 3578 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1895 3579 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1896 3580 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1897 3581 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1898 3582 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1899 3583 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1900 3584 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
1901 3585 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
1902 3586 1.664321 CCAAGTACTCCCTCCGTCCG 61.664 65.000 0.00 0.00 0.00 4.79
1903 3587 0.614134 ACCAAGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
1904 3588 1.747924 GTACCAAGTACTCCCTCCGTC 59.252 57.143 0.00 0.00 36.25 4.79
1905 3589 1.357079 AGTACCAAGTACTCCCTCCGT 59.643 52.381 0.00 0.00 44.86 4.69
1906 3590 2.140839 AGTACCAAGTACTCCCTCCG 57.859 55.000 0.00 0.00 44.86 4.63
1907 3591 2.500504 CCAAGTACCAAGTACTCCCTCC 59.499 54.545 7.81 0.00 46.96 4.30
1908 3592 2.093606 GCCAAGTACCAAGTACTCCCTC 60.094 54.545 7.81 0.00 46.96 4.30
1909 3593 1.907255 GCCAAGTACCAAGTACTCCCT 59.093 52.381 7.81 0.00 46.96 4.20
1910 3594 1.405121 CGCCAAGTACCAAGTACTCCC 60.405 57.143 7.81 0.15 46.96 4.30
1911 3595 2.005560 GCGCCAAGTACCAAGTACTCC 61.006 57.143 7.81 0.45 46.96 3.85
1912 3596 1.067071 AGCGCCAAGTACCAAGTACTC 60.067 52.381 2.29 0.00 46.96 2.59
1914 3598 1.804601 AAGCGCCAAGTACCAAGTAC 58.195 50.000 2.29 0.00 39.10 2.73
1915 3599 3.681593 TTAAGCGCCAAGTACCAAGTA 57.318 42.857 2.29 0.00 0.00 2.24
1916 3600 2.554370 TTAAGCGCCAAGTACCAAGT 57.446 45.000 2.29 0.00 0.00 3.16
1917 3601 3.427503 CCAATTAAGCGCCAAGTACCAAG 60.428 47.826 2.29 0.00 0.00 3.61
1918 3602 2.490115 CCAATTAAGCGCCAAGTACCAA 59.510 45.455 2.29 0.00 0.00 3.67
1919 3603 2.088423 CCAATTAAGCGCCAAGTACCA 58.912 47.619 2.29 0.00 0.00 3.25
1920 3604 2.089201 ACCAATTAAGCGCCAAGTACC 58.911 47.619 2.29 0.00 0.00 3.34
1921 3605 2.731027 GCACCAATTAAGCGCCAAGTAC 60.731 50.000 2.29 0.00 0.00 2.73
1924 3608 0.527565 AGCACCAATTAAGCGCCAAG 59.472 50.000 2.29 0.00 0.00 3.61
1934 3618 5.812642 CGTCTGAATCTAACTAGCACCAATT 59.187 40.000 0.00 0.00 0.00 2.32
1939 3623 4.096682 AGGACGTCTGAATCTAACTAGCAC 59.903 45.833 16.46 0.00 0.00 4.40
1961 3645 9.547753 ACAAATGGCTACATTAGTGAAGTATAG 57.452 33.333 0.00 0.00 46.25 1.31
2016 3700 5.519206 GCATTAACGACAGGAGTAAAGGTAG 59.481 44.000 0.00 0.00 0.00 3.18
2022 3706 3.192001 ACGAGCATTAACGACAGGAGTAA 59.808 43.478 0.00 0.00 0.00 2.24
2032 3716 7.946918 TTTTATTTCATCACGAGCATTAACG 57.053 32.000 0.00 0.00 0.00 3.18
2282 3968 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2283 3969 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2284 3970 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2285 3971 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2286 3972 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2287 3973 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2288 3974 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2289 3975 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2290 3976 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2291 3977 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2292 3978 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2293 3979 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2294 3980 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2295 3981 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2296 3982 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
2297 3983 9.975218 ATTTAGTACAAAGTTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
2298 3984 9.975218 AATTTAGTACAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
2299 3985 9.802039 AAATTTAGTACAAAGTTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
2300 3986 8.706322 AAATTTAGTACAAAGTTGGGTCATCT 57.294 30.769 0.00 0.00 0.00 2.90
2326 4012 8.531146 CCAAAATAGATGACCCAACTTTGTATT 58.469 33.333 0.00 0.00 0.00 1.89
2327 4013 7.893302 TCCAAAATAGATGACCCAACTTTGTAT 59.107 33.333 0.00 0.00 0.00 2.29
2328 4014 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2329 4015 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2330 4016 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2331 4017 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2332 4018 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2333 4019 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2334 4020 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2335 4021 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2336 4022 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2337 4023 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2338 4024 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2339 4025 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2340 4026 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2341 4027 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2342 4028 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2343 4029 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2344 4030 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2345 4031 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2346 4032 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2347 4033 5.433526 CATATTACTCCCTCCGTTCCAAAA 58.566 41.667 0.00 0.00 0.00 2.44
2348 4034 4.141574 CCATATTACTCCCTCCGTTCCAAA 60.142 45.833 0.00 0.00 0.00 3.28
2349 4035 3.389983 CCATATTACTCCCTCCGTTCCAA 59.610 47.826 0.00 0.00 0.00 3.53
2350 4036 2.969950 CCATATTACTCCCTCCGTTCCA 59.030 50.000 0.00 0.00 0.00 3.53
2351 4037 3.236896 TCCATATTACTCCCTCCGTTCC 58.763 50.000 0.00 0.00 0.00 3.62
2352 4038 3.896272 ACTCCATATTACTCCCTCCGTTC 59.104 47.826 0.00 0.00 0.00 3.95
2353 4039 3.924922 ACTCCATATTACTCCCTCCGTT 58.075 45.455 0.00 0.00 0.00 4.44
2354 4040 3.614568 ACTCCATATTACTCCCTCCGT 57.385 47.619 0.00 0.00 0.00 4.69
2355 4041 4.459685 CAGTACTCCATATTACTCCCTCCG 59.540 50.000 0.00 0.00 0.00 4.63
2356 4042 4.221041 GCAGTACTCCATATTACTCCCTCC 59.779 50.000 0.00 0.00 0.00 4.30
2357 4043 4.833380 TGCAGTACTCCATATTACTCCCTC 59.167 45.833 0.00 0.00 0.00 4.30
2358 4044 4.816126 TGCAGTACTCCATATTACTCCCT 58.184 43.478 0.00 0.00 0.00 4.20
2359 4045 4.021016 CCTGCAGTACTCCATATTACTCCC 60.021 50.000 13.81 0.00 0.00 4.30
2360 4046 4.589374 ACCTGCAGTACTCCATATTACTCC 59.411 45.833 13.81 0.00 0.00 3.85
2361 4047 5.793030 ACCTGCAGTACTCCATATTACTC 57.207 43.478 13.81 0.00 0.00 2.59
2362 4048 5.661312 TCAACCTGCAGTACTCCATATTACT 59.339 40.000 13.81 0.00 0.00 2.24
2363 4049 5.914033 TCAACCTGCAGTACTCCATATTAC 58.086 41.667 13.81 0.00 0.00 1.89
2364 4050 6.554982 AGATCAACCTGCAGTACTCCATATTA 59.445 38.462 13.81 0.00 0.00 0.98
2365 4051 5.367937 AGATCAACCTGCAGTACTCCATATT 59.632 40.000 13.81 0.00 0.00 1.28
2422 4112 3.560025 CCAGTCACAATCCTTTAGCACCT 60.560 47.826 0.00 0.00 0.00 4.00
2423 4113 2.749621 CCAGTCACAATCCTTTAGCACC 59.250 50.000 0.00 0.00 0.00 5.01
2517 4209 5.890424 ACACGGTTTCGATTATCCAAAAT 57.110 34.783 0.00 0.00 40.11 1.82
2529 4221 2.165030 ACTATCCTGGTACACGGTTTCG 59.835 50.000 0.00 0.00 43.02 3.46
2689 4383 5.278169 GCTCTCTTGACAACAACAACATCAT 60.278 40.000 0.00 0.00 32.27 2.45
2690 4384 4.035558 GCTCTCTTGACAACAACAACATCA 59.964 41.667 0.00 0.00 32.27 3.07
2691 4385 4.274459 AGCTCTCTTGACAACAACAACATC 59.726 41.667 0.00 0.00 32.27 3.06
2692 4386 4.036027 CAGCTCTCTTGACAACAACAACAT 59.964 41.667 0.00 0.00 32.27 2.71
2693 4387 3.374988 CAGCTCTCTTGACAACAACAACA 59.625 43.478 0.00 0.00 32.27 3.33
2694 4388 3.623060 TCAGCTCTCTTGACAACAACAAC 59.377 43.478 0.00 0.00 32.27 3.32
2695 4389 3.872696 TCAGCTCTCTTGACAACAACAA 58.127 40.909 0.00 0.00 32.27 2.83
2698 4392 4.375272 CTCTTCAGCTCTCTTGACAACAA 58.625 43.478 0.00 0.00 34.65 2.83
2711 4405 1.271817 CCAAGAAAGGCCTCTTCAGCT 60.272 52.381 21.92 6.76 33.25 4.24
2723 4417 0.514691 GCTCGAGCACACCAAGAAAG 59.485 55.000 31.91 0.00 41.59 2.62
2730 4424 1.954362 ATCTCCAGCTCGAGCACACC 61.954 60.000 36.87 9.59 45.16 4.16
2806 4500 0.036164 AGTAATGCTCGGTGTTGGCA 59.964 50.000 0.00 0.00 40.32 4.92
2807 4501 1.135689 CAAGTAATGCTCGGTGTTGGC 60.136 52.381 0.00 0.00 0.00 4.52
2810 4504 2.423577 GTCCAAGTAATGCTCGGTGTT 58.576 47.619 0.00 0.00 0.00 3.32
2811 4505 1.671850 CGTCCAAGTAATGCTCGGTGT 60.672 52.381 0.00 0.00 0.00 4.16
2812 4506 0.999406 CGTCCAAGTAATGCTCGGTG 59.001 55.000 0.00 0.00 0.00 4.94
2813 4507 0.892755 TCGTCCAAGTAATGCTCGGT 59.107 50.000 0.00 0.00 0.00 4.69
2814 4508 2.004583 TTCGTCCAAGTAATGCTCGG 57.995 50.000 0.00 0.00 0.00 4.63
2815 4509 5.041287 TCTATTTCGTCCAAGTAATGCTCG 58.959 41.667 0.00 0.00 0.00 5.03
2816 4510 7.116519 GGTATCTATTTCGTCCAAGTAATGCTC 59.883 40.741 0.00 0.00 0.00 4.26
2817 4511 6.929606 GGTATCTATTTCGTCCAAGTAATGCT 59.070 38.462 0.00 0.00 0.00 3.79
2840 4534 2.697147 AATGCTGAACCCACTGCGGT 62.697 55.000 0.00 0.00 37.93 5.68
2858 4552 7.466804 AGATACAGGGGAAATGACAGTAAAAA 58.533 34.615 0.00 0.00 0.00 1.94
2886 4580 2.096819 GCACGGTGTTCAACAGAGAAAA 59.903 45.455 10.24 0.00 0.00 2.29
2895 4589 2.292016 CAGGTTATTGCACGGTGTTCAA 59.708 45.455 10.24 6.81 0.00 2.69
2927 4621 1.740585 CGGTCTGAACCAACACAACAA 59.259 47.619 0.00 0.00 46.86 2.83
2979 4673 3.430236 GGTGTTCACCAAAGAAACCAAGG 60.430 47.826 16.01 0.00 33.13 3.61
3017 4711 9.787435 ACTAAACTGACAAAAACATCTATACCA 57.213 29.630 0.00 0.00 0.00 3.25
3036 4730 4.816925 GCCTGAAAGACTGAACACTAAACT 59.183 41.667 0.00 0.00 34.07 2.66
3076 4770 6.128902 CCGATAAAAACATCTATACCGACAGC 60.129 42.308 0.00 0.00 0.00 4.40
3097 4791 6.003950 AGCCAGCATAAAAATACATACCGAT 58.996 36.000 0.00 0.00 0.00 4.18
3158 4852 3.305335 GCGAGCCCTTCTTTGATCAAAAA 60.305 43.478 20.82 15.77 0.00 1.94
3159 4853 2.228822 GCGAGCCCTTCTTTGATCAAAA 59.771 45.455 20.82 7.31 0.00 2.44
3160 4854 1.812571 GCGAGCCCTTCTTTGATCAAA 59.187 47.619 19.45 19.45 0.00 2.69
3161 4855 1.453155 GCGAGCCCTTCTTTGATCAA 58.547 50.000 3.38 3.38 0.00 2.57
3162 4856 0.392998 GGCGAGCCCTTCTTTGATCA 60.393 55.000 1.97 0.00 0.00 2.92
3163 4857 2.398803 GGCGAGCCCTTCTTTGATC 58.601 57.895 1.97 0.00 0.00 2.92
3164 4858 4.645809 GGCGAGCCCTTCTTTGAT 57.354 55.556 1.97 0.00 0.00 2.57
3174 4868 3.699134 AAATCGGAAGGGGCGAGCC 62.699 63.158 5.37 5.37 0.00 4.70
3175 4869 1.715862 GAAAATCGGAAGGGGCGAGC 61.716 60.000 0.00 0.00 0.00 5.03
3176 4870 0.392461 TGAAAATCGGAAGGGGCGAG 60.392 55.000 0.00 0.00 0.00 5.03
3177 4871 0.254747 ATGAAAATCGGAAGGGGCGA 59.745 50.000 0.00 0.00 0.00 5.54
3178 4872 1.102978 AATGAAAATCGGAAGGGGCG 58.897 50.000 0.00 0.00 0.00 6.13
3179 4873 3.066760 CAGTAATGAAAATCGGAAGGGGC 59.933 47.826 0.00 0.00 0.00 5.80
3180 4874 4.523083 TCAGTAATGAAAATCGGAAGGGG 58.477 43.478 0.00 0.00 0.00 4.79
3181 4875 6.509418 TTTCAGTAATGAAAATCGGAAGGG 57.491 37.500 15.48 0.00 35.17 3.95
3182 4876 6.806739 GGTTTTCAGTAATGAAAATCGGAAGG 59.193 38.462 27.81 0.00 45.67 3.46
3183 4877 7.367285 TGGTTTTCAGTAATGAAAATCGGAAG 58.633 34.615 27.81 0.00 46.34 3.46
3184 4878 7.278461 TGGTTTTCAGTAATGAAAATCGGAA 57.722 32.000 27.81 13.33 46.34 4.30
3185 4879 6.885952 TGGTTTTCAGTAATGAAAATCGGA 57.114 33.333 27.81 13.94 46.34 4.55
3186 4880 6.364976 GGTTGGTTTTCAGTAATGAAAATCGG 59.635 38.462 27.81 0.00 46.34 4.18
3187 4881 7.145323 AGGTTGGTTTTCAGTAATGAAAATCG 58.855 34.615 27.81 0.00 46.34 3.34
3188 4882 8.887036 AAGGTTGGTTTTCAGTAATGAAAATC 57.113 30.769 27.81 27.28 45.67 2.17
3189 4883 9.758651 GTAAGGTTGGTTTTCAGTAATGAAAAT 57.241 29.630 27.81 15.79 45.67 1.82
3190 4884 8.750298 TGTAAGGTTGGTTTTCAGTAATGAAAA 58.250 29.630 23.18 23.18 43.10 2.29
3191 4885 8.294954 TGTAAGGTTGGTTTTCAGTAATGAAA 57.705 30.769 13.98 13.98 36.17 2.69
3192 4886 7.883391 TGTAAGGTTGGTTTTCAGTAATGAA 57.117 32.000 0.56 0.56 0.00 2.57
3193 4887 9.575868 TTATGTAAGGTTGGTTTTCAGTAATGA 57.424 29.630 0.00 0.00 0.00 2.57
3197 4891 9.575868 TGAATTATGTAAGGTTGGTTTTCAGTA 57.424 29.630 0.00 0.00 0.00 2.74
3198 4892 8.472007 TGAATTATGTAAGGTTGGTTTTCAGT 57.528 30.769 0.00 0.00 0.00 3.41
3202 4896 9.762381 TCCTATGAATTATGTAAGGTTGGTTTT 57.238 29.630 0.00 0.00 0.00 2.43
3203 4897 9.185680 GTCCTATGAATTATGTAAGGTTGGTTT 57.814 33.333 0.00 0.00 0.00 3.27
3204 4898 8.333235 TGTCCTATGAATTATGTAAGGTTGGTT 58.667 33.333 0.00 0.00 0.00 3.67
3205 4899 7.867921 TGTCCTATGAATTATGTAAGGTTGGT 58.132 34.615 0.00 0.00 0.00 3.67
3206 4900 8.210946 TCTGTCCTATGAATTATGTAAGGTTGG 58.789 37.037 0.00 0.00 0.00 3.77
3207 4901 9.046296 GTCTGTCCTATGAATTATGTAAGGTTG 57.954 37.037 0.00 0.00 0.00 3.77
3208 4902 8.768397 TGTCTGTCCTATGAATTATGTAAGGTT 58.232 33.333 0.00 0.00 0.00 3.50
3209 4903 8.319057 TGTCTGTCCTATGAATTATGTAAGGT 57.681 34.615 0.00 0.00 0.00 3.50
3210 4904 7.386299 GCTGTCTGTCCTATGAATTATGTAAGG 59.614 40.741 0.00 0.00 0.00 2.69
3211 4905 7.115520 CGCTGTCTGTCCTATGAATTATGTAAG 59.884 40.741 0.00 0.00 0.00 2.34
3212 4906 6.923508 CGCTGTCTGTCCTATGAATTATGTAA 59.076 38.462 0.00 0.00 0.00 2.41
3213 4907 6.447162 CGCTGTCTGTCCTATGAATTATGTA 58.553 40.000 0.00 0.00 0.00 2.29
3214 4908 5.292765 CGCTGTCTGTCCTATGAATTATGT 58.707 41.667 0.00 0.00 0.00 2.29
3215 4909 4.151335 GCGCTGTCTGTCCTATGAATTATG 59.849 45.833 0.00 0.00 0.00 1.90
3216 4910 4.202253 TGCGCTGTCTGTCCTATGAATTAT 60.202 41.667 9.73 0.00 0.00 1.28
3217 4911 3.132111 TGCGCTGTCTGTCCTATGAATTA 59.868 43.478 9.73 0.00 0.00 1.40
3218 4912 2.093500 TGCGCTGTCTGTCCTATGAATT 60.093 45.455 9.73 0.00 0.00 2.17
3219 4913 1.482182 TGCGCTGTCTGTCCTATGAAT 59.518 47.619 9.73 0.00 0.00 2.57
3220 4914 0.894835 TGCGCTGTCTGTCCTATGAA 59.105 50.000 9.73 0.00 0.00 2.57
3221 4915 0.894835 TTGCGCTGTCTGTCCTATGA 59.105 50.000 9.73 0.00 0.00 2.15
3222 4916 1.725641 TTTGCGCTGTCTGTCCTATG 58.274 50.000 9.73 0.00 0.00 2.23
3223 4917 2.028112 TCTTTTGCGCTGTCTGTCCTAT 60.028 45.455 9.73 0.00 0.00 2.57
3224 4918 1.343142 TCTTTTGCGCTGTCTGTCCTA 59.657 47.619 9.73 0.00 0.00 2.94
3225 4919 0.106708 TCTTTTGCGCTGTCTGTCCT 59.893 50.000 9.73 0.00 0.00 3.85
3226 4920 0.944386 TTCTTTTGCGCTGTCTGTCC 59.056 50.000 9.73 0.00 0.00 4.02
3227 4921 1.599542 AGTTCTTTTGCGCTGTCTGTC 59.400 47.619 9.73 0.00 0.00 3.51
3228 4922 1.668419 AGTTCTTTTGCGCTGTCTGT 58.332 45.000 9.73 0.00 0.00 3.41
3229 4923 2.763249 AAGTTCTTTTGCGCTGTCTG 57.237 45.000 9.73 0.00 0.00 3.51
3230 4924 3.128589 TCAAAAGTTCTTTTGCGCTGTCT 59.871 39.130 24.47 0.00 40.65 3.41
3231 4925 3.434637 TCAAAAGTTCTTTTGCGCTGTC 58.565 40.909 24.47 0.00 40.65 3.51
3232 4926 3.502191 TCAAAAGTTCTTTTGCGCTGT 57.498 38.095 24.47 0.00 40.65 4.40
3233 4927 3.798337 ACATCAAAAGTTCTTTTGCGCTG 59.202 39.130 24.47 21.93 40.65 5.18
3234 4928 4.045636 ACATCAAAAGTTCTTTTGCGCT 57.954 36.364 24.47 13.63 40.65 5.92
3235 4929 7.561237 TTATACATCAAAAGTTCTTTTGCGC 57.439 32.000 24.47 0.00 40.65 6.09
3236 4930 9.941991 CAATTATACATCAAAAGTTCTTTTGCG 57.058 29.630 24.47 20.58 40.65 4.85
3265 4959 6.608610 ACATTATTTCAGTTCGCTACAAACC 58.391 36.000 0.00 0.00 0.00 3.27
3336 5036 7.861629 TCTTTCAGAAACTATGTGGGTCATAT 58.138 34.615 0.00 0.00 38.21 1.78
3337 5037 7.252612 TCTTTCAGAAACTATGTGGGTCATA 57.747 36.000 0.00 0.00 37.91 2.15
3338 5038 6.126863 TCTTTCAGAAACTATGTGGGTCAT 57.873 37.500 0.00 0.00 40.25 3.06
3339 5039 5.551233 CTCTTTCAGAAACTATGTGGGTCA 58.449 41.667 0.00 0.00 0.00 4.02
3340 5040 4.393371 GCTCTTTCAGAAACTATGTGGGTC 59.607 45.833 0.00 0.00 0.00 4.46
3341 5041 4.202461 TGCTCTTTCAGAAACTATGTGGGT 60.202 41.667 0.00 0.00 0.00 4.51
3344 5044 5.123502 AGCATGCTCTTTCAGAAACTATGTG 59.876 40.000 16.30 0.00 0.00 3.21
3371 5071 3.490078 CCCTTTGCTTTTAGTTCGTTGCA 60.490 43.478 0.00 0.00 0.00 4.08
3372 5072 3.049912 CCCTTTGCTTTTAGTTCGTTGC 58.950 45.455 0.00 0.00 0.00 4.17
3373 5073 3.316868 TCCCCTTTGCTTTTAGTTCGTTG 59.683 43.478 0.00 0.00 0.00 4.10
3380 5083 5.912892 TCTGTTTTTCCCCTTTGCTTTTAG 58.087 37.500 0.00 0.00 0.00 1.85
3406 5109 8.596293 TGGCTCTGATATTTTTCCTTCATTTTT 58.404 29.630 0.00 0.00 0.00 1.94
3501 5243 8.469309 AATTAAGGTGCACTTCAATAGCATAT 57.531 30.769 17.98 0.00 40.78 1.78
3506 5248 7.320443 TGCTAATTAAGGTGCACTTCAATAG 57.680 36.000 17.98 12.90 40.64 1.73
3517 5259 5.282510 CGAGGTAGAGTGCTAATTAAGGTG 58.717 45.833 0.00 0.00 0.00 4.00
3518 5260 4.202131 GCGAGGTAGAGTGCTAATTAAGGT 60.202 45.833 0.00 0.00 0.00 3.50
3519 5261 4.202121 TGCGAGGTAGAGTGCTAATTAAGG 60.202 45.833 0.00 0.00 0.00 2.69
3523 5265 2.482142 GCTGCGAGGTAGAGTGCTAATT 60.482 50.000 0.00 0.00 0.00 1.40
3531 5273 1.520342 GGCAAGCTGCGAGGTAGAG 60.520 63.158 0.00 0.00 46.21 2.43
3532 5274 1.544825 AAGGCAAGCTGCGAGGTAGA 61.545 55.000 0.00 0.00 46.21 2.59
3533 5275 1.078848 AAGGCAAGCTGCGAGGTAG 60.079 57.895 0.00 0.00 46.21 3.18
3603 5353 2.225019 AGCGAGCAGAGATTTGTTTGTG 59.775 45.455 0.00 0.00 0.00 3.33
3629 5379 3.831911 TGCTTTATTTGGCTTGGCTTACT 59.168 39.130 0.00 0.00 0.00 2.24
3748 5499 3.006756 GCCGTGAGTAGCTGCTCCA 62.007 63.158 26.42 13.37 34.74 3.86
3760 5511 1.374343 CCTACGACAGCTAGCCGTGA 61.374 60.000 22.52 9.59 37.69 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.