>input_sequence_43606
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-------------------ATGGAAGGCGACGGCGGCACGGCGGCGGCCTGGATGGCGACGCACCGCGGGATGTACGAGC
GGGCCACGCGGCACCCCTTCACCGTCTCGATCCGCGACGGTTCCGTCGACCTGGCCGCCTTCAAACGCTGGCTCGTCAGT
ATTTTCTCAGCTTCTCTCCTCAGGCTCCCCCCTCCCCACCTCCGACCTCCACCCCACCCCCAATTTCTTATGTAGCTTTG
CTTATCAGTTGATACAAGGTGATTATACTTAAATTGGATTGAGCGGCTCCTGCTACGTAAAGCATCGCTAACCTTACACT
AGCAGTGGATCTTGATTCGGACTGCGTGACTTTTTGCACTGACTTGGATGAGCTAGACTAATAGAGCTACTTCTGTGGTC
TGAGAAGAAGAAACGATGGTTTGGATGGGACTTCATAAGGCTACTGAATGTGTTGATCCATTTAGCATGTGTGCAAGATT
TGGGGAGATTT-------TGCTCCTACAAAT-------------------------------------------------
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--------CAGAATTTGCTGCTCAATTAACAATAATGCTATCTTGTTTTTGGTAATTGGAGAATGTTGGACCTTCTTTTG
CCAGGCAACAGTAACCAGGCAGTTAAGCCTGTCAAATTC-CCTGCTGTGATTCCGTGGTCAAGGGCATATTTCTCCTTGT
TGAATAGTCTAGTTCACTCATGGCGATTTCCTGTCATGTTTACGAAATGCCATGCCTTTTGTTACTTGCATTACATATTC
ATACAAATACTTCCTGATGCACAGAGAAGGAACAATACTTCGTGGGGAATG----------------TATATAAAATAA-
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----------------------AAAAGAAACGGCGTGTTTCATTTAAATGTCTATTATTGGGAAGCTGCTTAGCTGGAAG
CACTAGGGTATTACTCTGCATTAGTACTCATATCCCTTTTTATCCATTTTGATGACAAGTATTTCCGGACGGAGGGAGTA
CTTGGTACTTGGCGCTTAATTGGTGCTAGTTAGATTCAGACGTCCTATACTTCACTAATGTAGCCATTTGTTTGTTTTCT
AAGATCAATCCCACAGTGGCTACCTTTACTCCTGTCGTTAATGCTCGTGATGAAATAAAAA--TATCTGTTTATGTATCA
TATTTCAGGGTCAGGACTACATGTTCGTGCGGGAATTTGTTGCATTTCTAGCTAGTGTACTGCTCAAGTGTTGCAAAGAG
TCAGACAGCTCGGACATGGAAACAATCCTAGGTGGCTTGGCTTCTCTTAGTGATGAGCTCTCTTGGTTCAAGAAGGAAGC
TGCTAAATGGAGTGTTGATCTGGCCGGTATTTCTCCCCTCAGTTCTACTCCCTCCGTTCCAAAATAGATGACCCAACTTT
GTACTAAATTTAATACAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTAATATGGAGTACTGCAGGTTGATCTC--T-
-CAAACATTTACACAATTATACAACCTTATAAGGTGCTAAAGGATTGTGAC--TGGTATTATTTTTATGGCCAGGTTTCT
CCAAAGCCTTGATGATCCAGAGATCAGCTACAGTGTAGCCATAACTACATTTTGGATAATCGAAACCGTGTACCAGGATA
GTTTTGCTTTCTGCATAGAAGAAGGTAACAAGACGCCGGCGGAGCTCCTG-GG-ACCTGTCAGAGATGGGGCAGCCCTGA
GTTCAAGCAGTACTGCCAGTCTCTGCAGCGGATCGCTGATCGCTGCTTGGCGAATGCGCCACATGATGTTGTTGTTGTCA
AGAGAGCTGAAGAGGCCTTTCTTGGTGTGCTCGAGCTGGAGATTGGATTCTGGGACATGAGTTCTTCTCAGTCCTAA---
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>chr4B_1_TraesCS4B01G184300
CATCACGACAATCTACACACAAGATAAGACACTCATCAATGTTTATAAAAATGTCTTGTTGCGGAAACATTTGCAAAGAG
GTTGTGTTGCAGAT----------TTTTTTTGCAACATAGATTATTGCACG------TTTTTTTTGAAACATACATTGTG
TCACACGATTTTTTT----GC-AGCAAAGGT--------AGAAAGAAAACATATTCAC-TTTT-TTTGCAACATAGACAA
TGTTTCAGGAATCCTTCTGTAACAAGGATGATGTTGCAAAAAACTTTGCAATGAAAGATGATGTCGCAACACCACTGTC-
--------GTTGCCGTTTGCAACTCCG-TCATTGTTGCAGAAACTTGTCGACCAGTGGCCGCACGGCCTGGCGGGCACAT
GCCGATT-CCAATTGCACGCACGAGGCCGAGGCGGTTC--------AGGCGGAGGTTAGCGCGGGGGAGCGACGCTCCTG
GACATCAGA-CGAGGGTATGTGCGCGGAGGCAGCAAGTTCCCGGTGGCAGCGCAGTGGAGGTCGG---CCGATGGCGGAA
TCTGGTGGCGGAGGTCGGCCATGGCAACAGTTGTTTATGGATCTATAACTAGTTGAGTCCAAGAGGCCACCGTCAACGGA
GACTTGGTCGTCGTCACCACTGCTGGGGGT--CTGCGTCCGCTTGTCCTGGTAGGCCTGCGACGATGCCAATGTAGGATC
CACCCGCCGTCACTCTCCTCAATCCCACCCACGACAGGATCTAACTCCCCGTCCGTTTTGCAACAAATGACTAGTTGCAG
TCTTTCTTTCTGAAACAATGG-TGGAGTTGTAAAAATATGAAGTAGGTGGAAGTTGACTCCCGATCATTGGATGGGGAAC
CAATCCGATGAGCAAGGAGGCGGTGGACGTTTGCCTAAAATTGGTCGGTTGAAGGCAAACATTTCCCTTAGAAAAAAACG
AATTTTCTTTTTATTTATTTTTTACAT-CTATTGTTCA-CCGAAACTCCATGTCCATGGAGATGCTCTAAGCTGCTTATC
ACAACTTCACACGGCAGCGATGGAAGGCGACGGCGGCACGGCGGCGGCCTGGATGGCGACGCACCGCGGGATGTACGAGC
GGGCCACGCGGCACCCCTTCACCGTCTCGATCCGCGACGGTTCCGTCGACCTGGCCGCCTTCAAACGCTGGCTCGTCAGT
ATTTTCTCAGCTTCTCTCCTCAGGCTCCCCCCTCCCCACCTCCGACCTCCACCCCACCCCCAATTTCTTATGTAGCTTTG
CTTATCAGTTGATACAAGGTGATTATACTTAAATTGGATTGAGCGGCTCCTGCTACGTAAAGCATCGCTAACCTTACACT
AGCAGTGGATCTTGATTCGGACTGCGTGACTTTTTGCACTGACTTGGATGAGCTAGACTAATAGAGCTACTTCTGTGGTC
TGAGAAGAAGAAACGATGGTTTGGATGGGACTTCATAAGGCTACTGAATGTGTTGATCCATTTAGCATGTGTGCAAGATT
TGGGGAGATTT-------TGCTCCTACAAAT-------------------------------------------------
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--------CAGAATTTGCTGCTCAATTAACAATAATGCTATCTTGTTTTTGGTAATTGGAGAATGTTGGACCTTCTTTTG
CCAGGCAACAGTAACCAGGCAGTTAAGCCTGTCAAATTC-CCTGCTGTGATTCCGTGGTCAAGGGCATATTTCTCCTTGT
TGAATAGTCTAGTTCACTCATGGCGATTTCCTGTCATGTTTACGAAATGCCATGCCTTTTGTTACTTGCATTACATATTC
ATACAAATACTTCCTGATGCACAGAGAAGGAACAATACTTCGTGGGGAATG----------------TATATAAAATAA-
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----------------------AAAAGAAACGGCGTGTTTCATTTAAATGTCTATTATTGGGAAGCTGCTTAGCTGGAAG
CACTAGGGTATTACTCTGCATTAGTACTCATATCCCTTTTTATCCATTTTGATGACAAGTATTTCCGGACGGAGGGAGTA
CTTGGTACTTGGCGCTTAATTGGTGCTAGTTAGATTCAGACGTCCTATACTTCACTAATGTAGCCATTTGTTTGTTTTCT
AAGATCAATCCCACAGTGGCTACCTTTACTCCTGTCGTTAATGCTCGTGATGAAATAAAAA--TATCTGTTTATGTATCA
TATTTCAGGGTCAGGACTACATGTTCGTGCGGGAATTTGTTGCATTTCTAGCTAGTGTACTGCTCAAGTGTTGCAAAGAG
TCAGACAGCTCGGACATGGAAACAATCCTAGGTGGCTTGGCTTCTCTTAGTGATGAGCTCTCTTGGTTCAAGAAGGAAGC
TGCTAAATGGAGTGTTGATCTGGCCGGTATTTCTCCCCTCAGTTCTACTCCCTCCGTTCCAAAATAGATGACCCAACTTT
GTACTAAATTTAATACAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTAATATGGAGTACTGCAGGTTGATCTC--T-
-CAAACATTTACACAATTATACAACCTTATAAGGTGCTAAAGGATTGTGAC--TGGTATTATTTTTATGGCCAGGTTTCT
CCAAAGCCTTGATGATCCAGAGATCAGCTACAGTGTAGCCATAACTACATTTTGGATAATCGAAACCGTGTACCAGGATA
GTTTTGCTTTCTGCATAGAAGAAGGTAACAAGACGCCGGCGGAGCTCCTG-GG-ACCTGTCAGAGATGGGGCAGCCCTGA
GTTCAAGCAGTACTGCCAGTCTCTGCAGCGGATCGCTGATCGCTGCTTGGCGAATGCGCCACATGATGTTGTTGTTGTCA
AGAGAGCTGAAGAGGCCTTTCTTGGTGTGCTCGAGCTGGAGATTGGATTCTGGGACATGAGTTCTTCTCAGTCCTAAGCG
GCGACTACATCGTGCCAACTGCCAACACCGAGCATTACTTGGACGAAATAGATACCGCAGTGGGTTCAGCATTTTTACTG
TCATTTCCCCTGTATCTTGTTTTCTCTGTTGAACACCGTGCAATAACCTGGATGAAATAATTGTTGTGTTGGTTCAGACC
GAAACCTCGATTGCACTTTATTTTTCCACGTACCTTGGTTTCTTTGGTGAACACCGTGGAATTACTTGGATGGTATAGAT
GTTTTTGTCAGTTTAGTGTTCAGTCTTTCAGGCTGGAAACCTCGGCTGCGCTGTCGGTATAGATGTTTTTATCGGTATGT
ATTTTTATGCTGGCTTCTTTGGATTCCCAAGAACTTTTGATGTATTTTTTTTTTTTGATCAAAGAAGGGCTCGCCCCTTC
CGATTTTCATTACTGAAAACCAACCTTACATAATTCATAGGACAGACAGCGCAAAAGAACTTTTGATGTATAATTGTAGG
TTTGTAGCGAACTGAAATAATGTTGCCATGTGAAAACCTAAACGTCACAACCAGTTGCTA-----AGTACGTC-AATATG
ACCCACATAGTTTCTGAAAGAGCATGCTGCTGCAACGA---ACTAAAAGCAAAGGGGAAAAACAGATTAAAAA-------
--------------------------------TGAAGGAAAAATATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTT
ATGGGCCCACCACGCTTCCGCTGCGCCACTCTGATTTGTGTGATATGCTATTGAAGTGCACCTTAATTAGCACTCTACCT
CGCAGCTTGCCTTGATAATTTGATAT-----TCAGAACTCCTAATAAACATTATAGTA---TCTTGTAATTTCACAAACA
AATCTCTGCTCGCTTTATAGTAAGCCAAGCCAAATAAAGCAACAAACCAAACTT-ACACGCCCAACATGCCAATGTGCCA
CGCAAGCTAAGCCAGAAGCTACCGCTCATGATGACGGCCGGCAATGGCAGAAGACGGCTGGAGCAGCTACTCACGGCTAG
CTGTCGTAGGTGCG
>chr4A_1
CATCACGACAATCTACCCACAAGATAAGACACTCATCAATGTTTATAT--------------------------------
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------------------------------------------------------------------------AAAAAACC
GACTTTTCTTTTATTTATTTTTTACATTCTAATGTTCACCAGAAACTCCATGTCCATGGAGATGCTCTAAGCTGCTTATC
ACAACTTCACACGGCAGCGATGGAAGGCGACGGCGGCACGGCGGCGGCCTGGATGGCGACGCACCGCGGGATGTACGAGC
GGGCCACGCGGCACCCCTTCACCGTCTCGATCCGCGACGGTTCCGTCGACCTGGCCGCCTTCAAACGCTGGCTCGTCAGT
ATTTTCTCGGCTTCTCTCCTCAGGCTCCCCCTTCCCC-CCTCCGACCCCCACCCCACCCCCAATTTCTTATGTAGCTTTG
CTTATCAGTTGATACAAGGTGATTATACTTAAATAGGATTGAGCGGCTCCTGCTACGTAAAGCATCGCTAACCTTACGCT
AGCAGTGGATCTTGATTCGAACTGTGTGACTTTTTGCACTGACTTAGATGAGCTAGACTAATAGAGCTACTTCTGTGGCC
TGAGAAGAAGAAAAGATGGTGTGGGTGGGACTTCATAAGGCTACTGAATGTGTTGATCCATTTAGCATGTGTGCAAGATT
TGGGGAGATTTGTGGGATTGCTGCTACAAATCAGCATAG---GAGGACCTGGAATGCTTATTTTGGCCGCCGCTTAGACT
TTCATCCAACTTAATCTGAGAAACGGCATGGTTACGGGTTACCAAACCTGGAGTGTGAAACATAAACTGAAAGTGTGCTG
GGACTCTTGCCATGGTGGTTTTGAAGGACA-------ACAGTGTTTGTTCTGAGTAGGATGTTAGCTAGGATTGAAATTC
CCCGTCGACAGAATTTGCTGCTCAATTAACGACAATGCTATCTTGATTTTGGTAATTGGGGAATGTTGGACCTTCTTTTG
TCAGGCAACGGTAACTAGGCAGTTACGGCTGTCAAATTC-CTGT-TGTGATTCGGTGGTCAGGGGCACATTTCTCCCTGT
TGAATAGTCTGGTTCACTCATGGTGATTTCCTGTCATGTTTACGGAATGTGATGCTTTTTGTTACTTGCATTACATATTC
ATACAAATACTTCTTGATGCACAGAGAAGAAACAATACTTCTTGGGGAATA----------------TATTTTTTTTTTT
TCGAACCGGGCTTTTCCCCTTTCCATTACTTTCATAACGGAAATACAATGTCTCAGGAACTGAAACCAGCAAGGCTAGAG
AGAAAGAGGAAAAGCGAGTTCGGAGCAGCATCAAGAAACCCACTATCTGCGCCTGTCATCAGGAACAACAGATCATGGGG
TGAAAACTTGATGTCACCCAAAACCGCGCTAACGAACACCTACGAGCAGTACTATAAGTTTTACAGATAACACCAACAAA
CATCGGGCCACAGCCGCCAAAACACCTCAAGACCAAAAGAGCTACCATAAACCTCCTACCAAGGCTCTCAAGAAGCATCC
ACGTCCCTCCTCCTGTAGAAGCAACACGCCAGTAACATACTGAACAGGATTAGCATCGCCTCCCTCCTCAGTTTTCGTCG
CGCCCATCTTGAGCTGGAACTGGTGGACCGCAAAGCAGCATCATCTGCGTAGTGTTCTCCTTCAGCATCTCTGCTCCTTT
TTTCACCATCTCTGCTTTCTGGAGGCCTGCCCAGTTTATCAAAAAAGAACAAGCTGTGAACACAATCTCAAACGGGGAGT
TAATCCATTTGTGTTCAAAAGTGGCTCGGTTCCTGGCCAACCAAATAGCCCAGCATATAGCAGCCAAGCAAACAGTGTAA
ATTTTGTCCATCCCAGGTAGGAAACTGTACATCCACGTATAGTATTGCCAAACAGAGTTAGGACAGCAATCAGTTCCAAG
TAAGGAACCCACGTTTCTCCACACCACCCTGGACACAGGGCATAAAAAGAACAAGTGTTGGGCTGTTTCTAATTGATTAC
AAAACGAACAGCAAGGATCCCCCGGCCATAGTCTTTTTTTCATATTGTCCCTGGTCAGGATGGCATTCTGCGCCATCTGC
CATAAGAAAATTTGGATTTTAAGAGGTAGCTTTGCATCCCAAATCCATTTAAAATTAGATCCTGCAATATCTTTCTCCAG
CCAAGCATACATGGATTTAGTTGTATAATTGCCCGAACTATCCCATTTCCAATAAACCTCATCTGCCCCATCACTAAGTT
TAAGGTTTAACACCTCATTATTCATATCTCCCCATTGTTGCAGCATCTCAGGGGACATCCTCCTCCTAAAAGAGGTGATC
TGATCCAGGTTTTTAAACTGGTCAACATTACAATTTTGCTCATTACAGGTCTCAAAGAGCAGTGGGAATCTGTCTTTAAA
AGGCATTTTACCCTCCAGGCTATCCTGCCAGAGTCTAGCCACATCTCCTCTATTTAGATTAATACCCCTTCCCATCATAT
ATAGGTCTTTCACTTTCAAAAGTGACTTCCAGCAAGGCGAGTCACTGGCTTTGTGTTTCACCATAGCCACCGAAGTTTTC
TTAAGGTATTTAGCCTTAAAATAAAAGAAACAGCGTGTTTCATTTAAATGTCTATTATTGAGAAGCTGCTTAGCTGGAAG
CACTAGGGTATTACTCTGCATTAGTACTTGGTACT---------------------------------------------
-----TGGAGCTTCATTGA----TGCTAGTTAGATTCAGACGTCATATACTTCACTAATGTAGCCATTTGTTTGTTTTCT
AAGATCAATCCCACAGTGGTTACCGCTACTCCTGTTGTTGATGCTCGTGATGAAAT-AAAA--TATCTGTTTATGTATCA
TATTTCAGGGTCAGGACTACATGTTCGTGCGGGAATTTGTTGCATTTCTAGCTAGTGTATTGCTCAAGTGTTGCAAAGAG
TCAGACAGCTCGGACATGGAAACAATCCTAGGTGGCTTGGCTTCTCTTAGTGATGAGCTCTCTTGGTTCAAGAAGGAAGC
TGCTAAGTGGAGTGTTGATCTGGCCGGTATTTCTCCCCTCAGTTCTA---------------------------------
---------------------------------------------------ATATGGAGTACTGCAGGTTGATCTCTAT-
-CAAACATTTACACAATTATACAACCTTATAGAGTGCTAAAGGATTGTGACTATGGTATTATTTTCATGGCCAGGTTTCT
CCAAAGCCTTGATGATCCAGAGATCAGCTACACTGTAGCCATAACTACGTTTTGGATAATTGAAACCGTGTACCAGGATA
GTTTTGCTTTCTGCATAGAAGAAGGTAACAAGACCCCGGCGGAGCTCCTG-GGGACGTGTCAGAGATGGGGCAGCCCTGA
GTTCAAGCAGTACTGCCAGTCTCTGCAGCGGATCGCTGATCGCTGCTTGGCAAATGCGCCACC------TGATGTTGTCA
AGAGTGCTGAAGAGGCTTTTCTTCGGGTGCTTAAGCTGGAAATTGGATTCTGGGACATGAGTTCTTCTCTGTCCTAAGCG
GCGACTACATCGTGCCAACACCCT-------GCATTACTTGGACGGAATAGACGCCGCAGTGGGTTCAGCA-TTTTACTG
TCATTTCCCTTGTATCTTGGTTTCTCTGGTGAACACCGTGCAATAACCTGGATGAAATAAATGTTGTGTTGGTTCAGACC
GAAACCTCGATTGCACTTTATTTTTTCACGTATCTAGGTTTCTTTGGTCAGCACGGTGGAATTACTTGGACGGTATAGAT
GTTTTTGTCGGTTTAGTGTTCAGTCTTTCAGGCTGAAAACCTCGGCTGCACCGTCGGTATAGATGTTTTTGTTGGTATGT
ATTTTTATGCTGGCTTCTTTGGATTCCCAAGAACTTA-------------------------------------------
---------------------------------------------------------------TGATGTATAATTGTAAG
TTTGTAGCGAACTGAAATAATGTTGCCATGTGAAAACCTAAATGTCACAACCAGTTGCTAAGTACAGTACGTCAATATGA
CCCTACATCGTTTCTGAAAGAGCATGCTGC---AAAGAACTAGTAAAAGCAAAGGGGAAAAACGGATTTAAAAAAAAAAA
GCAAACGGGAAAAAAGAAAAAATCTGCAAAAATGAAGGAAAAATATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTT
ATGGGCCCACCAGGCTTCCGCTGCGCCACTCTGATTTGTGTATGATGTAATTGAAGTCTTACTTGATTAGCATGATACCT
CGCAGCTTGCCTTGATAATTTGATATCACACTCAGAACTCCTAATAAACATTATAGTA---TCTTATAATTTTACAAACA
AATCTCTGCTTGCTTTATTGTAAGCTAAGCCAAATAAAGCAACAAACCAAACTT-ACACGCCCAAGATGCCAATGTGCCG
CGCAAGCTAAGCCAGAAGCTACCGCTCATGATGACGTCCGGCAATGGCAGAAGCCGGCACGAGCAGCTACGCACGGCTAG
CTGTCGTAGGTGCG
>chr6B_49
------------------------------------------------AAATGTCTTGTTGCGGAAACATTTGCAAAGAT
GTCGTGTTGCGGAT----------TTTTTTTTCGACATAGATTGTGTCATGGGAATTTTTTTTTTGAAACATAGATTGTG
TCACGGGAATTTTTT--TTGC-AACAAAAGTTGTGTTGCAGAAAGAAAATGTATTCAC-TTTT-TTTGCAATATAGATAA
TGTTTTAGGAATCCTTTTGCAACAAGGACAATGTTGCAAAAAACTTTGCAATGAAAGGTGATGTCGCAACACCACCATC-
--------ATCGCCATTTGGAACTCTG-TGGTTGTTGCAGAAACTCGTCGGTCAGTGGACGCACGGCCTGG-GGGCACAT
GCTGATT-CCG-TTGCACGCACGAGGCCGAGGAGGTTC--------GGACGGAGGTCGGCGCGGGGTCACGGCACTCCTG
GACGCCGGACCGAGGGGATGTGCGCGGAGGCGACGAGTTCCTAGC-GCGGTGCAGTGGAGGTCGACGACCGACAGCGGAA
TCTGGTGGTGGAGGTCAGCCATGGCAACGGTTGTTTCTAGATCTGTAACTAGTTGAGTCCGGGAGGCCACCGCCAACGGA
GACTTGGTCGTCGTCATCACCGCA-GGGGT--CTGCGCCCGCTTGTCCCGGTAGGGCTGCGACGACACCGCTGCATGATC
CAGCCGCCGTCACTC-TCCCAATCCCAGTCGCTGCAGGATCTAACTCCCCTTCTGTTTTGCAACAAAGGCCTAGTTACAG
TCTTGCCTTCCGAAAC------------------------AAGTAGGTTGAGGTTGACTCCCGATCATTGGATGAAGAAC
CAATCCGATGGACAAGGAGGCGGTCGGCGCTCGCCTAAAATCGGTCGGCTGAAAGCAAACATTTCCC-------------
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>chr6B_49
------------------------------------------------AAACGTCTTATTGCGGAAACATTTGCAAAGAG
GTTGTGTTGTGG-ATTTT-TTTTCCTTTTTTGCAGCATAGATTGTGTCACGGGA---TTTTTTTTGAAACATAGATTGTG
TCACAGGATTTTTG---TTGC-AACAAAGGTTGGGTTGCAGAAAGAAAATGTATTCA---TTTTTTTGCAACATAGATAA
TGTTTTAAGAATCCTTTTGCAACAAGGACGATATTGCAAAAAT-TTTGCAATGAAAGACGATGTCGCAACACCAGCGTC-
--------GTGGCCGTTTGCAACTCCG-TCGTTGTTGCAGAAACTCATCGACCAGTGGCCGCACGGCCTGGCGGGCACAT
GTTGATT-CCC-TTGCACGCACGAGGCCGAGGCGGTTC--------AAGCGGAGGTCAGCGTGGGGTCGCGACGCTCCTG
GACGCTGGACCGAGGGGATGCGCGCGGAGGCGGCGAGTTCCCGGCGATGGTGCAGTGGAGGTCGACGACAGATGGCGGAA
TCTGGTGGTGGAGGTCGGCCATGGCAACCGTTGTTTCTGGATCTGTAATTAGTTTAGTCCAGGAGGCCACCGCCAACGGT
GACTTGGTCATCGTCACCACCGTAGGGGGT--GTGTGCCCGCTTGTCCCGGTATGCCTGCGATGACGCCGCTGAAGGATC
TAGACGCCGTCGCTCTCCCCAATCCCAGCCA-------------------------------------------------
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>chr2B_49
------------------------------------------------AAACGTCTTGTTGCGGAAACATTTGCAAAGAG
GTTGTGTTGCGG----------------------------ATTGTGTGACGGGA----TTTTTTTGAAACATAGATTGTG
TCACGGGATTTCTTT--TTGC-AACAAAGGTTGTGTTGCAGAAAGAAAACGTATTCAC-TTTT-TTACAG--AAAGATAA
TGTTTCGGGATTTCTTTTGCAACAAGGACTATGTTGCAAAAAA-AATGCAATGAAAGATGATG-CGCAACACCACCATC-
--------A---CTATTTGCAACTCCG-TCATTGTTGCAGAAACTCGTCGGCC-GTGGCCGCATGACCTGGCTGGCACAT
GCTGATTGC-G-TTGCACGCACGAGGCCGAGGCAGTTC--------GGGCGGAGGTCAGCACGGGGTAGCGGCGCTCCTG
GACGCCGGACCGAGGGGATGCGCGCGGAGGCGGCGAGTTCCTGGCGGCAGCACAGCAGAGGTCGACGACCGACGGCGAAA
TCTAGTGATGGGGGTCGACCATGGCAATGGCTGTTTCTGGATCTGTAGCTAGTTGAGTCCAGGAGGCCACCGCGAGCGGA
GACTTGGTTGTCGTCACCACCGCT-GGGGTGTCTACGCCCGCTTGTCCCGGTAGGCCGGCGACGATACCGCTA-GGAATC
CAGAAGCCGTCGCTCTCCCCAATCCTAGGCGTTGCAGGATCTAACTCCCCGTCCATTTTGCAACAAAGGCCTAGTTGCAG
TCTTGCCTTCTGAAACAA-GG-TGGAGTTGCAAGAGTATGAAGTAGGTGGTGGTTGACTCCGGATC----------GAAC
CAATCCGATGGACAAGGAGGCGGGGAACGCTCACCTAAAATCAGTCGGTTGAAGGCAAATATTTCCCTTA----------
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>chr2B_49
------------------------------------------------AAACGTATTGTTGCGGAAACATTTGCAAAGAG
GTTGTGTTGTGC-ATTTTCTTTTCTTTTTTTGCAACATAGATTGTCTCACAGGA---TATTTTGTGAAACATACATTGTG
TTACGAGATTTTTATTTTTGA-AACAAAGGTTGTGTTGCAGAAAGGAAATGTATTCAC-TTTTTTTTGCAACATAGATAA
TGTTTCAGGAATCCTTTTGCAACAAGGACGATGTTGCAAAAAC-TCTACAATGAAAGATGATGTCGCAACACCACCGTT-
--------GTCGCTGTTTGCAACTGCG-TCGTTGTTGCAGAAACTCATCGGCCAGTGGTCACACGGCCTGACGGGCACAT
GCTGATT-C-G-TTGCACACATGAGGCCGAGGCGGTTC--------ATGCGGAGGTCAGTGTGGGGTCGCGGCGCTCCTG
GACACCGAACCGAGGGGATGCGCACGAAGGCGGCGAGTTCCTGGCGGCGGCGCAGTAGAAGTCGACGACCGACGGCGGAA
TCTGGTGGTGGAGGTCAGCCATGGCAATAGTTGTTTCCGGATCTGTAACTAGTTGAGTCCACAAGACCACCACCAACGGA
GACTTGATCATCGTCAC---------------------------------------------------------------
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>chr3B_49
------------------------------------------------AAATGTCTTGTTGCGGAAACATTTGCAAAGAG
GTTGTGTTGCGAAATTTT-ATTTTATTTTTTTCAACATAGATTGTGTCACGAGA---TTTTTTTTGAAACATAGATTGT-
-CACGAGATTTTTCT--TTTTTAACAAAGGTTGTGTCGTAGAAAGAAAATGTACGCAC-TTTTTTTTGCAACATAGATAA
TGTTTCAGGAATCCTTTTGCAACACGGACGATGTTGCAAAAAACTTTGCAATGAAACATGATGTCGCAACACCACGT---
-------CGTCGCCGTTTGCAACTCAG-TCGTTGTTGCAGAAACTCATCGGCCAGTGACCGCACGGCCTGGCGGGCACAT
GCTAATT-CCG-TTGCATGCACAAGGCCGAGGCGGTTC--------ATACGGAGGGAAGCGCAGGGTCGCGGCGCTCCTG
GACGCCGGACAGAGGAGATGCGCGAGGAGGCTGTGAGTTCTTGGTGGCGGCGCAGTGGAAGTCGACGACCGGCTGCGAAA
TCTGGTGGTGGAGGTCGGCCATGGCAATGGTTGTTTCTGGATCTGTAACTAGTTGAGTAC-GGAGGACACCGCCAACAGA
GGCTTGGTCGTCGTCACCACCGCAGGGGGT--CTGCACCCGTTTGTCCCGATAGGCCTGCGATGACCGCATTGTAGGATC
CAGCTGCCTTCGCTCTCCCCAATCCTAGCCGCTGCAGGATTTAAGTCCCCGTCCCTTTTGTAACTAAT------------
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>chr7B_169
GTAGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAATAAAACGTATTCAA-CTTTTTTTGCAACATAGATAA
TGTTTTAGGAATCCTTTTGCAACAAGGATGATGTTGCAAAAACAGTTGCAATGAAAGATGATGTCGCAACACCACCGTCA
TCGTTGCCGTTGCCGTTTGCAACTACG-TAGTTGTTACAGAAACTCGTCGGCCCGTGGCCGCACGACCTGGTGGGCTTAT
GCTGATT-CCA-CGACACGCACGAGGTCAAGGCAGTTC--------AGGTGGAGGTCAACACGGGGTCGCGGCACTCCCG
AACACAAGACCCATGGGATGCGCGCAGAGGCGGTGAGCTCCTGGCGGCGGGGCAGTGGAGGTCGACGACCGGCAGCAAAA
TCTGGTGGTGGAGGTCGGACAGGGCAGCGGTTGTTTCTGAATCTGTAGCTAGTTGAGTCGAGGAGGCCGCCGCGAGTGGA
GACTTGGTCGTCATCACCACCGCA-GGGGT--CTGCGCCCGCTCATCCCGATAGGCCTGCGATGACGTCGCTGTGGGATC
TAGCTGTCGTCGCTCTCCCCAATCCCAGCCGCTGTAGGATCTAACTCCCTGTCCATTTTGCAACAAAGGACTAGTTGTAG
TCTTGTCTTCTGAAACAT-GGATGGAGTTGCAAGAATAAGAGT-------AGGTTGACTCCTGATCGTTGGATAAAGATC
CAATTCAATGGACATGGAGGCGACGGATGCTCGCCGAAAATCGGTTGGTTGAAGGCAAACTTTCC---------------
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>chr7D_172
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----------------------------------------GAAAGAAAATATATTCACTTTTTTTTTGCAACATTGATAA
CGTTTCAGGAATCCTTTTGCAACAAGGACGATGTTGCAAAAAACTTTGCAATGAAAGATGATGTCGCAACACCACCGCC-
--------GTCGCCATTTGCAATGATGATCGTTGTTGCAGAAACTCGTCGGTCAGTGGCCGCACGGCCTGGTGAGCA---
---------------CATGCACGAGGCCGAGGCGGTTTAGGGCTTTAGGCGGAGGTCGGCGCGGGGTCGCGGCGCTCCTG
GATGCCGGACCGAGGGGATGCGCGCGGAGGCGGTGAGTTCCTAGTGGCGGCGCAGTGGAGGCCGACGACCGATGGCGGAA
TCTGGTGGTGGAGGTCGGCCATGGCAACCATTGTTTCTGGATCTGTAACTAGTTGAGTCCAGGAGGTCACCGCCAACGGA
GACTTGGTCGTCGTCACCACCGCA-GGGGA-TCTACACCCGCTTGTCCCGTTAATCCTGCGACGACGGCGTTGCAGGATC
CAGCTGTCGTTGCTCTTCCCAATCCCAGCCGCTGCAGGATCTAACTCCTTGTCCGTTTTGCAACAAAGGCCTGGTTGTAG
TCT-GCTTTCTGAAACAA-GGGTGGAGTTGCAAGAATATGAAGTAGGTGGAGGTTGACTCCCGAACGTTGGATGAAAAAC
CAATCCGATGGACAAGGAGGCGGCGGACGCTCGCCTAAAATCGGTCGGTTAAAGGTAAACATTTCCCTT-----------
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>chr4D_906
TTTTC---------------------------------------------------------------------------
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--------TTTTATTTATTTTTACATT-CTAATGTTCA-CAGAAACTCCATGTCCATGGAGATGCTCTAAGCTGCTTATC
ACAACTTCACACGGCAGCGATGGAAGGCGACGGCGGCACGGCGGCGGCCTGGATGGCGACGCACCGCGGTATGTATGAGC
GGGCCACGCGGCACCCCTTCACCGTCTCGATCCGCGACGGTTCCGTCGACCTGGCCGCCTTCAAACGCTGGCTCGTCAGT
ATTTTCTCGGCT----------------------------------------------------------------TTTG
CTTATCAGTTGATACAAGGTGATTATACTTATATTGGATTGAGCGGCTCCTGCTACGTAAAGCATCGCTAACCTTACACT
GCCAGTGGATCTTGATTCAGACTGCGTGACTTTTTGCACTGACTTAGATGAGCTAGGCTAATAGAGCTACTTCTGTGGTC
TGAGAAGAAGAAAAGATAGTATGGGTGGGATTTCATAAGGCTACTGAATGTGTTGATCCATTTAGCATGCGTGCAAGATT
TGTGGAGATTTGTGGGATTGCTGCTACAAATCAGCATAGTAGGAGGACCTGGAATGCTTATTTTGGCCAACGCTTAGACT
TTCAACCAACTTAATCTGAGAAACGGCATGGTTACGGCTTACCAAACCTGGAGTGTGAAACAGAAACTGAAAGTGTGCTG
GGACTCTTGCCATGGTGGTTTTGAAGTGCAGTATGGTACAGTGTTTGTTCTGATTAGGATGTTAGCTAGGATTGAAATTC
CCCGTCGACAGAATTTGCTGCTCAATTAGCGATAATG----------------------------TTGGACCTTTTTT-G
TCAGGCAACAGTAACTAGGCAGTTAAGGCTGTCAAATTCCCTGT-TGTGATTCCGTGGTCAAGGGCATACCTCTCCTTAT
TGAATAGTCTAGTTCACTCATGGCGATTTCCTGTCATGTTTACATAATGCGATGCTTTTTGTTACTTGCATTACATATTC
ATACAAGTACTTCTTGATGCACAGAGAAGGAACATTAATTCTTCAGTTTTGCTAAAGCACATCTAGATATCTAAAATAA-
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----------------------AAAATAAACGGTGCGCTTCATTTAAATGTCTATTATTGGGAAGCTGCTTAGCTGGAAG
CAATAGGGTATTACTCTGCATTAGTACTTGGTACT---------------------------------------------
-----TAATTGGCGCTTGATTGTTGAAAGTTAGATTCAGACGTCATATACTTCACTAATGTAGTTTCTTGCTTGTTTTCT
AAGACCAATTCTGCAGTGGTTACCTAC----------------------ATGAAATAAGATAGTATCTGTTTATGTATCA
TATTTCAGGGTCAGGACTACATGTTCGTGCGGGAATTTGTTGCATTTCTAGCTAGTGTACTGCTCAAGTGTTGCAAACAA
TCAGACAGCTCGGACATGGAAACAATCCTAGGTGGCTTGGCTTCTCTTAGCGATGAGCTCTCTTGGTTCAAGAAGGAAGC
TGCTAAATGGAGTGTTGATCTGGCCGGTATTTCCCCCCTCAGTTCTA---------------------------------
---------------------------------------------------ATATGGAGTACTGCAGGTTAATCTC--TG
TCAAACACTGCCACAATTCTACAACCT--TAGAGTGCTAAAGGATTTTAACTATGGTATTATTCTTATGGCCAGGTTTCT
CCAGAGCTTTGATGATCCAGAGATCAGCTACACTGTTGCCATAACTACGTTTTGGATAATTGAAACCGTGTACCAGGATA
GTTTTGCTTCCTGCATAGAAGAAGGTAACAAGACGCCGGCGGAGCTCCTGGGG-ACCTGTCAGAGATGGGGCAGCCCTGA
GTTCAAGCAGTACTGCCAGTCTCTGCAGCGGATCGCTGATCGCTGCTTGGCGAATGCGCCACC------TGATGTTGTCA
AGAATGCTGAAGAGGCTTTTCTTCGTGTGCTCGAGCTGGAGATTGGATTCTGGGACATGAGTTCTTCTCAGTCCTAAGCG
GCGACTGCATCGTGCCAGCACCGT-------GCGTTACTTGGACGAAATAGATGCTGCAGTGGGTTCAGCA-TTTTACTG
TCATTTCCCCTGTATCTTGGTTTCTCTGATGAACACCGTGCAATAACCTGGATGAAATAAATGTTGTGTTGGTTCAGACC
GAAACCTCGATTGCACTTTATTTTTTCACGTATCTTGGTTTCTTTGGTGAACACCGTGGAATTACTTGGGCGGTATAGAT
GTTTTTGTCGGTTTAGTGTTCAGTCTTTCATTCTGAAAACCTCGGCTGCAATGTCGGTATAGATGTTTTTGTCCGTATGT
ATTTTTATGCTGGCTTCTTTGGATTCCCAAGAAC----------------------------------------------
------------------------------------------------------------TTTTGATGTATAATCGTAAG
TTTGTAGCGAACTGAAATAATGTTGCCATGTGAAAACCCAAACGTCACAACCAGTTACTGAGTACAGTACGTC-ATATGA
CCCTACATTGTTTCTGAAAGAGCATGCTGC---AACGA---AGTAAAAGCAAAGGGGAAAAACATAT------AAAAAAA
GCAAAGGGGAAAAAA--------CTGCAAAAATGAAGGAATAATATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTT
ATGGGCCCACCACGCTTCCGCTGCGCCACTCTGATTTGTGTGCTATATAGTTGAGTGGGCACTA-ATTAACATGGTCACT
CGCATCTTGCCTTGATAATATGATATCACACTCAGAACTCCTAATAAACATTATAGTAGTATCTTGTAATTTTACAAACA
AATCTTTGCTCGCTTTATTCTAAGCCAAACAAAATAAAGCAACAAACCAAACTTAACACGCCCAAGATGCCAATGTGCCA
CGCAAGCTAAGCTCGA--------------ATGACGGCCGGCAATGGCAGAAGACGGCAGGAGCAGGCACGCACGGCTAG
CTGTCGTAGGTGCG
>SNPs
----------------S------------------------------S--------------------------------
----------S--------------------------------S-SS---------------------------------
-----S-----------------S-----------------------------------------------------S--
----------------S--S-------------------------------------------------------S----
---------------------------------------------S----------------------------------
--S--------S--------------------------------------------S---------S-------------
----S-----------S--------------S--S-----------------------------S---------------
--------S---------------------------S-------S----------------S----------S-------
--------------------S----------------S----------S---------------------S---------
--S---------------S--------S----SS----------------------------------------------
----S-------------S-----------S--S-----------------S----------------------SS----
----------SS-----------------S-S---------S----------------------------SS-------S
S-S---SS-----------------------S--------S---------------------------------------
--------------------------------------------------------------------------------
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--------S----------------------S-----S---------S--------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
-------------S------S---S-------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------S--------------S-------------S--------------------
S--------------S-----------S-------------SSSS-----------------------------------
--------------------------------------------S-----S----S------------------------
-------------S---------------------------S----------------------------S---------
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----------------------------SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS--S---------S----S---------------------S-----------------------------------
-------------------S-----S---------S---S----------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
-------------------------------SS-----------------------------------------------
--------------------------------S---------------S-----------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------SSSSSSS--S--------
----S-----------S------S--------------------------------------------------------
-------------------SS--SSSSSSSS----------------------S-----------------S--------
-------------------S--------S-------------------------------S-------------------
-------------------------S------S-------------------------------------S---------
---------S-------------------------S-------------S--------------------S---------
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-
---------------------------------------------------------------------------SSSSS
S--S----S---------------------SSS---------S-------------------------S-----------
--------------------------------------------------------------------------------
------------------------------------------S----SS---------SSS---S-------SSS-----
------------------------------------------------------------------------S-------
------------------S----------------------------------------------S--------------
----------------------------------------------------------S-----------S---------
--------------
>forward_876
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--------------------------------------------------------ACTCCCGATCATTGGATGGG----
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>reverse_3578
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---------------------------------------------------------AGTATTTCCGGACGGAGGGA---
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>forward_1885
--------------------------------------------------------------------------------
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-------------------------AAGCCTGTCAAATTCCCTGC-----------------------------------
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>reverse_4500
--------------------------------------------------------------------------------
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-------------------TGCCAACACCGAGCATTACT-----------------------------------------
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--------------
