Multiple sequence alignment - TraesCS4B01G175000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G175000 chr4B 100.000 4030 0 0 1 4030 383657859 383653830 0.000000e+00 7443.0
1 TraesCS4B01G175000 chr4B 93.443 366 20 3 3669 4030 651972241 651972606 1.270000e-149 540.0
2 TraesCS4B01G175000 chr4B 94.611 334 13 3 3701 4030 146534375 146534707 2.780000e-141 512.0
3 TraesCS4B01G175000 chr4B 90.250 400 21 7 3633 4030 82304635 82304252 1.290000e-139 507.0
4 TraesCS4B01G175000 chr4D 94.301 1509 40 21 704 2193 307275299 307273818 0.000000e+00 2268.0
5 TraesCS4B01G175000 chr4D 94.010 1469 47 21 2162 3597 307273814 307272354 0.000000e+00 2187.0
6 TraesCS4B01G175000 chr4A 93.548 1519 48 21 704 2193 169900833 169902330 0.000000e+00 2217.0
7 TraesCS4B01G175000 chr4A 94.716 1287 33 8 2220 3499 169902498 169903756 0.000000e+00 1967.0
8 TraesCS4B01G175000 chr4A 91.645 383 24 7 3655 4030 619567889 619567508 1.280000e-144 523.0
9 TraesCS4B01G175000 chr5B 94.835 697 34 2 1 695 75909104 75908408 0.000000e+00 1086.0
10 TraesCS4B01G175000 chr5B 91.535 697 56 2 1 695 439229421 439230116 0.000000e+00 957.0
11 TraesCS4B01G175000 chr5B 87.518 697 85 2 1 695 206503327 206502631 0.000000e+00 804.0
12 TraesCS4B01G175000 chr5B 93.316 374 18 6 3663 4030 123368209 123368581 2.740000e-151 545.0
13 TraesCS4B01G175000 chr5B 93.151 365 21 2 3670 4030 123154640 123155004 2.130000e-147 532.0
14 TraesCS4B01G175000 chr7B 94.245 695 37 3 3 695 517627647 517626954 0.000000e+00 1059.0
15 TraesCS4B01G175000 chr7B 94.766 363 14 3 3673 4030 712768279 712768641 9.780000e-156 560.0
16 TraesCS4B01G175000 chr7B 93.425 365 17 3 3673 4030 55055506 55055142 5.930000e-148 534.0
17 TraesCS4B01G175000 chr3B 93.188 690 46 1 1 689 18494190 18494879 0.000000e+00 1013.0
18 TraesCS4B01G175000 chr3D 89.755 693 70 1 4 695 445829836 445829144 0.000000e+00 885.0
19 TraesCS4B01G175000 chr1D 88.506 696 79 1 1 695 3735156 3735851 0.000000e+00 841.0
20 TraesCS4B01G175000 chr2D 88.348 678 73 3 1 672 476827225 476827902 0.000000e+00 809.0
21 TraesCS4B01G175000 chr2D 87.088 697 84 5 1 695 107463899 107463207 0.000000e+00 784.0
22 TraesCS4B01G175000 chr2B 92.950 383 19 7 3655 4030 97427093 97427474 5.890000e-153 551.0
23 TraesCS4B01G175000 chr6B 93.664 363 17 4 3673 4030 182450099 182450460 4.580000e-149 538.0
24 TraesCS4B01G175000 chr1B 93.407 364 18 5 3673 4030 67509366 67509729 5.930000e-148 534.0
25 TraesCS4B01G175000 chr1B 100.000 28 0 0 3606 3633 562202874 562202901 7.000000e-03 52.8
26 TraesCS4B01G175000 chrUn 93.865 326 16 3 3709 4030 292687002 292686677 4.680000e-134 488.0
27 TraesCS4B01G175000 chr6A 92.661 327 11 7 3709 4030 14305075 14305393 3.670000e-125 459.0
28 TraesCS4B01G175000 chr6A 92.638 163 4 4 3721 3883 84905701 84905547 1.130000e-55 228.0
29 TraesCS4B01G175000 chr1A 89.970 329 17 10 3709 4030 506669980 506669661 1.040000e-110 411.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G175000 chr4B 383653830 383657859 4029 True 7443.0 7443 100.0000 1 4030 1 chr4B.!!$R2 4029
1 TraesCS4B01G175000 chr4D 307272354 307275299 2945 True 2227.5 2268 94.1555 704 3597 2 chr4D.!!$R1 2893
2 TraesCS4B01G175000 chr4A 169900833 169903756 2923 False 2092.0 2217 94.1320 704 3499 2 chr4A.!!$F1 2795
3 TraesCS4B01G175000 chr5B 75908408 75909104 696 True 1086.0 1086 94.8350 1 695 1 chr5B.!!$R1 694
4 TraesCS4B01G175000 chr5B 439229421 439230116 695 False 957.0 957 91.5350 1 695 1 chr5B.!!$F3 694
5 TraesCS4B01G175000 chr5B 206502631 206503327 696 True 804.0 804 87.5180 1 695 1 chr5B.!!$R2 694
6 TraesCS4B01G175000 chr7B 517626954 517627647 693 True 1059.0 1059 94.2450 3 695 1 chr7B.!!$R2 692
7 TraesCS4B01G175000 chr3B 18494190 18494879 689 False 1013.0 1013 93.1880 1 689 1 chr3B.!!$F1 688
8 TraesCS4B01G175000 chr3D 445829144 445829836 692 True 885.0 885 89.7550 4 695 1 chr3D.!!$R1 691
9 TraesCS4B01G175000 chr1D 3735156 3735851 695 False 841.0 841 88.5060 1 695 1 chr1D.!!$F1 694
10 TraesCS4B01G175000 chr2D 476827225 476827902 677 False 809.0 809 88.3480 1 672 1 chr2D.!!$F1 671
11 TraesCS4B01G175000 chr2D 107463207 107463899 692 True 784.0 784 87.0880 1 695 1 chr2D.!!$R1 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 791 0.036388 GTCCTTGCGTGGATCTGGAA 60.036 55.0 0.75 0.0 38.52 3.53 F
1353 1381 0.036590 TCAACCTGCAGCACAGCATA 59.963 50.0 8.66 0.0 45.78 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2534 2730 1.086696 CATTACCAGCCACACTTCCG 58.913 55.000 0.00 0.00 0.00 4.30 R
3092 3288 1.271054 TGAGGTTCAAGCTCAGCTTCC 60.271 52.381 15.45 8.33 46.77 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.918258 TCTGGCAATGGGATGCTACA 59.082 50.000 0.00 0.00 45.68 2.74
41 42 3.745975 CAGGCAAGTACTCGACAAAATCA 59.254 43.478 0.00 0.00 0.00 2.57
180 183 2.125912 CTTCGGACCGCAGACAGG 60.126 66.667 7.90 0.00 0.00 4.00
240 243 5.560722 TTGTGACCAAGAAGAGGACAATA 57.439 39.130 0.00 0.00 32.89 1.90
499 502 1.299648 CCAACGAATGGGGAGCAGA 59.700 57.895 4.38 0.00 46.27 4.26
547 550 2.291043 GGGCCTTGTCGAGAGGGAA 61.291 63.158 15.47 0.00 34.75 3.97
561 564 4.160626 CGAGAGGGAAAGGAGTTCTACATT 59.839 45.833 0.00 0.00 36.40 2.71
597 600 2.435120 TAGCGTGTGGAGTGGAGGGA 62.435 60.000 0.00 0.00 0.00 4.20
609 612 0.689412 TGGAGGGATGGACGTGCATA 60.689 55.000 23.24 2.93 0.00 3.14
619 627 0.665068 GACGTGCATACCGTGTGTGA 60.665 55.000 5.50 0.00 38.92 3.58
675 684 9.088512 ACATAACTCTTTTCGTCTATAAAGCTG 57.911 33.333 0.00 0.00 32.67 4.24
676 685 6.969828 AACTCTTTTCGTCTATAAAGCTGG 57.030 37.500 0.00 0.00 32.67 4.85
698 707 3.919163 ACGCAATTTGGGTACGAGA 57.081 47.368 16.55 0.00 41.98 4.04
699 708 2.172851 ACGCAATTTGGGTACGAGAA 57.827 45.000 16.55 0.00 41.98 2.87
700 709 2.496111 ACGCAATTTGGGTACGAGAAA 58.504 42.857 16.55 0.00 41.98 2.52
701 710 2.879646 ACGCAATTTGGGTACGAGAAAA 59.120 40.909 16.55 0.00 41.98 2.29
702 711 3.315749 ACGCAATTTGGGTACGAGAAAAA 59.684 39.130 16.55 0.00 41.98 1.94
708 717 2.613691 TGGGTACGAGAAAAATCGAGC 58.386 47.619 2.78 0.00 45.56 5.03
733 742 2.048222 GGAAAGCGGCAAAAGGGC 60.048 61.111 1.45 0.00 39.06 5.19
782 791 0.036388 GTCCTTGCGTGGATCTGGAA 60.036 55.000 0.75 0.00 38.52 3.53
836 850 2.031919 ATCCGTCCAAGCGCAACA 59.968 55.556 11.47 0.00 0.00 3.33
840 854 2.946762 GTCCAAGCGCAACAGTCC 59.053 61.111 11.47 0.00 0.00 3.85
845 859 2.251642 AAGCGCAACAGTCCCGTTC 61.252 57.895 11.47 0.00 0.00 3.95
854 868 4.668118 GTCCCGTTCGACGCCCAA 62.668 66.667 0.00 0.00 40.91 4.12
855 869 4.367023 TCCCGTTCGACGCCCAAG 62.367 66.667 0.00 0.00 40.91 3.61
860 874 4.697756 TTCGACGCCCAAGCCCAG 62.698 66.667 0.00 0.00 34.57 4.45
862 876 4.473520 CGACGCCCAAGCCCAGAT 62.474 66.667 0.00 0.00 34.57 2.90
873 901 3.797353 CCCAGATCCACCCCCACG 61.797 72.222 0.00 0.00 0.00 4.94
929 957 1.134098 CACTGACCCATCCCCACATAC 60.134 57.143 0.00 0.00 0.00 2.39
930 958 0.474184 CTGACCCATCCCCACATACC 59.526 60.000 0.00 0.00 0.00 2.73
931 959 0.253394 TGACCCATCCCCACATACCA 60.253 55.000 0.00 0.00 0.00 3.25
932 960 0.474184 GACCCATCCCCACATACCAG 59.526 60.000 0.00 0.00 0.00 4.00
933 961 0.253630 ACCCATCCCCACATACCAGT 60.254 55.000 0.00 0.00 0.00 4.00
934 962 1.010294 ACCCATCCCCACATACCAGTA 59.990 52.381 0.00 0.00 0.00 2.74
1200 1228 2.535485 AATGCGATCCGGACAAGGCA 62.535 55.000 18.90 18.90 34.60 4.75
1353 1381 0.036590 TCAACCTGCAGCACAGCATA 59.963 50.000 8.66 0.00 45.78 3.14
1704 1732 1.080025 GAGGTACCCACACAGCGTC 60.080 63.158 8.74 0.00 0.00 5.19
1962 1994 2.159254 ACTTGCTTTGCATGTGTCGTTT 60.159 40.909 9.69 0.00 43.50 3.60
2142 2189 5.048846 ACGGGAAATATCCTAGTTGCAAT 57.951 39.130 0.59 0.00 45.77 3.56
2189 2237 3.686726 CACTATCCAGCTGAGTTTGGTTC 59.313 47.826 17.39 0.00 35.89 3.62
2198 2282 2.673368 CTGAGTTTGGTTCGCTATCACC 59.327 50.000 0.00 0.00 0.00 4.02
2233 2422 5.282946 ACTGTTACCTACTTATAAGCCCCA 58.717 41.667 12.54 0.06 0.00 4.96
2257 2452 9.003658 CCATTTATGTTATAGCTCTAGGGTTTG 57.996 37.037 0.00 0.00 0.00 2.93
2391 2587 6.015504 CGAATTATTGACTGTCTGAAAACCG 58.984 40.000 9.51 2.43 0.00 4.44
2480 2676 1.341080 CCTTGCAGGGTGGTTTCATT 58.659 50.000 6.72 0.00 0.00 2.57
2534 2730 5.410746 TGAGAAAGATGTGCACTTCTCATTC 59.589 40.000 30.47 27.86 32.51 2.67
2633 2829 2.660258 ATACGCCATCCTCCAACCGC 62.660 60.000 0.00 0.00 0.00 5.68
2789 2985 7.284034 GGCTTTCTGATAAATCTGATCAAAGGA 59.716 37.037 0.00 0.00 35.21 3.36
2812 3008 1.366319 AGCCCAGAAGAGTGGACAAT 58.634 50.000 0.00 0.00 40.44 2.71
2915 3111 3.513912 TCTGGAAGACCATAGCTCGAAAA 59.486 43.478 0.00 0.00 45.87 2.29
3092 3288 1.415659 CAAGAGGAGAGTGCCCATAGG 59.584 57.143 0.00 0.00 0.00 2.57
3195 3392 6.918067 ATCACAATATTACAGATCCGAGGA 57.082 37.500 0.00 0.00 0.00 3.71
3248 3445 2.543777 AATGTGCTCAACCGTGTAGT 57.456 45.000 0.00 0.00 0.00 2.73
3254 3451 2.629137 TGCTCAACCGTGTAGTTTAGGA 59.371 45.455 0.00 0.00 0.00 2.94
3331 3528 9.647918 ACTGATCATTTCCACTCTAGTCTTATA 57.352 33.333 0.00 0.00 0.00 0.98
3333 3530 8.580720 TGATCATTTCCACTCTAGTCTTATAGC 58.419 37.037 0.00 0.00 0.00 2.97
3374 3571 0.539051 CCCATTCTCGGAGCAAGAGT 59.461 55.000 0.00 0.00 37.07 3.24
3453 3650 4.291792 TGTCGTCCTTCCCTTCCATTATA 58.708 43.478 0.00 0.00 0.00 0.98
3510 3707 1.078709 CATAGGTGCACAGGTCGTTG 58.921 55.000 20.43 2.17 0.00 4.10
3511 3708 0.673644 ATAGGTGCACAGGTCGTTGC 60.674 55.000 20.43 0.00 0.00 4.17
3512 3709 2.725203 TAGGTGCACAGGTCGTTGCC 62.725 60.000 20.43 0.00 0.00 4.52
3530 3739 4.301072 TGCCTTCTTGGTAACTATTGCT 57.699 40.909 0.00 0.00 38.35 3.91
3549 3758 3.887110 TGCTTATCTGATCTGGGCAATTG 59.113 43.478 0.00 0.00 0.00 2.32
3562 3783 2.927553 GCAATTGACAAGCCAGGTAG 57.072 50.000 10.34 0.00 0.00 3.18
3576 3797 0.324830 AGGTAGACTCCTGACTGCCC 60.325 60.000 0.00 0.00 40.30 5.36
3597 3818 4.415150 CGGCTGCCTCATGGGTGT 62.415 66.667 17.92 0.00 37.43 4.16
3598 3819 2.439156 GGCTGCCTCATGGGTGTC 60.439 66.667 12.43 0.00 37.43 3.67
3599 3820 2.673523 GCTGCCTCATGGGTGTCT 59.326 61.111 0.00 0.00 37.43 3.41
3600 3821 1.748122 GCTGCCTCATGGGTGTCTG 60.748 63.158 0.00 0.00 37.43 3.51
3601 3822 1.077930 CTGCCTCATGGGTGTCTGG 60.078 63.158 0.00 0.00 37.43 3.86
3602 3823 2.439156 GCCTCATGGGTGTCTGGC 60.439 66.667 0.00 0.00 37.43 4.85
3603 3824 2.273449 CCTCATGGGTGTCTGGCC 59.727 66.667 0.00 0.00 0.00 5.36
3604 3825 2.304056 CCTCATGGGTGTCTGGCCT 61.304 63.158 3.32 0.00 0.00 5.19
3605 3826 1.222936 CTCATGGGTGTCTGGCCTC 59.777 63.158 3.32 0.00 0.00 4.70
3606 3827 1.229625 TCATGGGTGTCTGGCCTCT 60.230 57.895 3.32 0.00 0.00 3.69
3607 3828 1.077930 CATGGGTGTCTGGCCTCTG 60.078 63.158 3.32 0.00 0.00 3.35
3608 3829 1.539869 ATGGGTGTCTGGCCTCTGT 60.540 57.895 3.32 0.00 0.00 3.41
3609 3830 0.252696 ATGGGTGTCTGGCCTCTGTA 60.253 55.000 3.32 0.00 0.00 2.74
3610 3831 1.192146 TGGGTGTCTGGCCTCTGTAC 61.192 60.000 3.32 0.00 0.00 2.90
3611 3832 0.905337 GGGTGTCTGGCCTCTGTACT 60.905 60.000 3.32 0.00 0.00 2.73
3612 3833 1.618888 GGGTGTCTGGCCTCTGTACTA 60.619 57.143 3.32 0.00 0.00 1.82
3613 3834 2.176889 GGTGTCTGGCCTCTGTACTAA 58.823 52.381 3.32 0.00 0.00 2.24
3614 3835 2.166664 GGTGTCTGGCCTCTGTACTAAG 59.833 54.545 3.32 0.00 0.00 2.18
3615 3836 3.090037 GTGTCTGGCCTCTGTACTAAGA 58.910 50.000 3.32 0.00 0.00 2.10
3616 3837 3.129638 GTGTCTGGCCTCTGTACTAAGAG 59.870 52.174 3.32 3.71 42.90 2.85
3617 3838 2.100087 GTCTGGCCTCTGTACTAAGAGC 59.900 54.545 3.32 1.89 42.08 4.09
3618 3839 2.103373 CTGGCCTCTGTACTAAGAGCA 58.897 52.381 3.32 0.00 42.08 4.26
3619 3840 2.697751 CTGGCCTCTGTACTAAGAGCAT 59.302 50.000 3.32 0.00 42.08 3.79
3620 3841 2.695666 TGGCCTCTGTACTAAGAGCATC 59.304 50.000 3.32 0.00 42.08 3.91
3631 3852 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
3632 3853 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
3633 3854 3.512516 GCATCTCCAACAGCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
3634 3855 2.270205 CATCTCCAACAGCCGCCT 59.730 61.111 0.00 0.00 0.00 5.52
3635 3856 2.110967 CATCTCCAACAGCCGCCTG 61.111 63.158 0.00 0.00 44.80 4.85
3662 3883 3.115892 CGCGCTTCGGCTGGTTTA 61.116 61.111 5.56 0.00 39.13 2.01
3663 3884 2.785258 GCGCTTCGGCTGGTTTAG 59.215 61.111 0.00 0.00 39.13 1.85
3671 3892 3.508840 GCTGGTTTAGCGCGGCAT 61.509 61.111 8.83 0.00 43.63 4.40
3672 3893 3.051392 GCTGGTTTAGCGCGGCATT 62.051 57.895 8.83 0.00 43.63 3.56
3673 3894 1.711060 GCTGGTTTAGCGCGGCATTA 61.711 55.000 8.83 0.00 43.63 1.90
3674 3895 0.944386 CTGGTTTAGCGCGGCATTAT 59.056 50.000 8.83 0.00 0.00 1.28
3675 3896 2.139917 CTGGTTTAGCGCGGCATTATA 58.860 47.619 8.83 0.00 0.00 0.98
3676 3897 2.546368 CTGGTTTAGCGCGGCATTATAA 59.454 45.455 8.83 0.00 0.00 0.98
3677 3898 3.142951 TGGTTTAGCGCGGCATTATAAT 58.857 40.909 8.83 0.00 0.00 1.28
3678 3899 3.058570 TGGTTTAGCGCGGCATTATAATG 60.059 43.478 19.29 19.29 39.40 1.90
3689 3910 2.300914 CATTATAATGCACAGCACGCG 58.699 47.619 12.38 3.53 43.04 6.01
3690 3911 0.027455 TTATAATGCACAGCACGCGC 59.973 50.000 5.73 0.00 43.04 6.86
3691 3912 1.771073 TATAATGCACAGCACGCGCC 61.771 55.000 5.73 0.00 43.04 6.53
3709 3930 2.278596 GCTCCGATAGCGCGTCAA 60.279 61.111 8.43 0.00 42.53 3.18
3710 3931 1.876714 GCTCCGATAGCGCGTCAAA 60.877 57.895 8.43 2.82 42.53 2.69
3711 3932 1.418342 GCTCCGATAGCGCGTCAAAA 61.418 55.000 8.43 0.00 42.53 2.44
3712 3933 1.209128 CTCCGATAGCGCGTCAAAAT 58.791 50.000 8.43 0.00 35.83 1.82
3713 3934 2.390938 CTCCGATAGCGCGTCAAAATA 58.609 47.619 8.43 0.00 35.83 1.40
3714 3935 2.121786 TCCGATAGCGCGTCAAAATAC 58.878 47.619 8.43 0.00 35.83 1.89
3715 3936 1.855978 CCGATAGCGCGTCAAAATACA 59.144 47.619 8.43 0.00 35.83 2.29
3716 3937 2.097396 CCGATAGCGCGTCAAAATACAG 60.097 50.000 8.43 0.00 35.83 2.74
3717 3938 2.656632 CGATAGCGCGTCAAAATACAGC 60.657 50.000 8.43 0.00 0.00 4.40
3720 3941 2.897855 CGCGTCAAAATACAGCGTG 58.102 52.632 0.00 0.00 44.96 5.34
3721 3942 1.120147 CGCGTCAAAATACAGCGTGC 61.120 55.000 0.00 0.00 44.96 5.34
3722 3943 1.120147 GCGTCAAAATACAGCGTGCG 61.120 55.000 0.00 0.00 0.00 5.34
3723 3944 1.120147 CGTCAAAATACAGCGTGCGC 61.120 55.000 8.67 8.67 42.33 6.09
3724 3945 0.793104 GTCAAAATACAGCGTGCGCC 60.793 55.000 13.21 0.00 43.17 6.53
3725 3946 1.863012 CAAAATACAGCGTGCGCCG 60.863 57.895 13.21 9.69 43.17 6.46
3737 3958 4.341502 GCGCCGCACAAACCACAT 62.342 61.111 3.15 0.00 0.00 3.21
3738 3959 2.972144 GCGCCGCACAAACCACATA 61.972 57.895 3.15 0.00 0.00 2.29
3739 3960 1.800032 CGCCGCACAAACCACATAT 59.200 52.632 0.00 0.00 0.00 1.78
3740 3961 1.010580 CGCCGCACAAACCACATATA 58.989 50.000 0.00 0.00 0.00 0.86
3741 3962 1.267832 CGCCGCACAAACCACATATAC 60.268 52.381 0.00 0.00 0.00 1.47
3742 3963 1.740585 GCCGCACAAACCACATATACA 59.259 47.619 0.00 0.00 0.00 2.29
3743 3964 2.357637 GCCGCACAAACCACATATACAT 59.642 45.455 0.00 0.00 0.00 2.29
3744 3965 3.181491 GCCGCACAAACCACATATACATT 60.181 43.478 0.00 0.00 0.00 2.71
3745 3966 4.676723 GCCGCACAAACCACATATACATTT 60.677 41.667 0.00 0.00 0.00 2.32
3746 3967 5.034152 CCGCACAAACCACATATACATTTC 58.966 41.667 0.00 0.00 0.00 2.17
3747 3968 5.392487 CCGCACAAACCACATATACATTTCA 60.392 40.000 0.00 0.00 0.00 2.69
3748 3969 6.089476 CGCACAAACCACATATACATTTCAA 58.911 36.000 0.00 0.00 0.00 2.69
3749 3970 6.584184 CGCACAAACCACATATACATTTCAAA 59.416 34.615 0.00 0.00 0.00 2.69
3750 3971 7.115520 CGCACAAACCACATATACATTTCAAAA 59.884 33.333 0.00 0.00 0.00 2.44
3751 3972 8.768955 GCACAAACCACATATACATTTCAAAAA 58.231 29.630 0.00 0.00 0.00 1.94
3772 3993 7.878547 AAAAAGGGAAGCAAAAATGATCAAA 57.121 28.000 0.00 0.00 0.00 2.69
3773 3994 6.866010 AAAGGGAAGCAAAAATGATCAAAC 57.134 33.333 0.00 0.00 0.00 2.93
3774 3995 5.549742 AGGGAAGCAAAAATGATCAAACA 57.450 34.783 0.00 0.00 0.00 2.83
3775 3996 5.927819 AGGGAAGCAAAAATGATCAAACAA 58.072 33.333 0.00 0.00 0.00 2.83
3776 3997 6.355747 AGGGAAGCAAAAATGATCAAACAAA 58.644 32.000 0.00 0.00 0.00 2.83
3777 3998 6.260714 AGGGAAGCAAAAATGATCAAACAAAC 59.739 34.615 0.00 0.00 0.00 2.93
3778 3999 6.038050 GGGAAGCAAAAATGATCAAACAAACA 59.962 34.615 0.00 0.00 0.00 2.83
3779 4000 7.414984 GGGAAGCAAAAATGATCAAACAAACAA 60.415 33.333 0.00 0.00 0.00 2.83
3780 4001 7.967303 GGAAGCAAAAATGATCAAACAAACAAA 59.033 29.630 0.00 0.00 0.00 2.83
3781 4002 9.339492 GAAGCAAAAATGATCAAACAAACAAAA 57.661 25.926 0.00 0.00 0.00 2.44
3782 4003 9.857957 AAGCAAAAATGATCAAACAAACAAAAT 57.142 22.222 0.00 0.00 0.00 1.82
3825 4046 9.820229 GTTCAATTTCGTTATCATTACAACTCA 57.180 29.630 0.00 0.00 0.00 3.41
3853 4074 9.263538 ACAAATAGTTTATCGTTCAGTACAACA 57.736 29.630 0.00 0.00 0.00 3.33
3861 4082 9.549509 TTTATCGTTCAGTACAACAAATAATGC 57.450 29.630 0.00 0.00 0.00 3.56
3862 4083 6.546972 TCGTTCAGTACAACAAATAATGCA 57.453 33.333 0.00 0.00 0.00 3.96
3863 4084 6.960468 TCGTTCAGTACAACAAATAATGCAA 58.040 32.000 0.00 0.00 0.00 4.08
3864 4085 7.589395 TCGTTCAGTACAACAAATAATGCAAT 58.411 30.769 0.00 0.00 0.00 3.56
3865 4086 8.722394 TCGTTCAGTACAACAAATAATGCAATA 58.278 29.630 0.00 0.00 0.00 1.90
3866 4087 9.335891 CGTTCAGTACAACAAATAATGCAATAA 57.664 29.630 0.00 0.00 0.00 1.40
3871 4092 9.973450 AGTACAACAAATAATGCAATAAACACA 57.027 25.926 0.00 0.00 0.00 3.72
3874 4095 9.102757 ACAACAAATAATGCAATAAACACAACA 57.897 25.926 0.00 0.00 0.00 3.33
3875 4096 9.926751 CAACAAATAATGCAATAAACACAACAA 57.073 25.926 0.00 0.00 0.00 2.83
3883 4104 9.539825 AATGCAATAAACACAACAAATAGTTCA 57.460 25.926 0.00 0.00 38.74 3.18
3884 4105 9.709495 ATGCAATAAACACAACAAATAGTTCAT 57.291 25.926 0.00 0.00 38.74 2.57
3885 4106 8.976471 TGCAATAAACACAACAAATAGTTCATG 58.024 29.630 0.00 0.00 38.74 3.07
3886 4107 9.190858 GCAATAAACACAACAAATAGTTCATGA 57.809 29.630 0.00 0.00 38.74 3.07
3890 4111 8.994429 AAACACAACAAATAGTTCATGAACAA 57.006 26.923 33.92 0.98 43.47 2.83
3891 4112 9.598517 AAACACAACAAATAGTTCATGAACAAT 57.401 25.926 33.92 20.33 43.47 2.71
3893 4114 9.677567 ACACAACAAATAGTTCATGAACAATAC 57.322 29.630 33.92 13.24 43.47 1.89
3894 4115 9.676195 CACAACAAATAGTTCATGAACAATACA 57.324 29.630 33.92 17.07 43.47 2.29
3904 4125 9.414295 AGTTCATGAACAATACAATGTTGAATG 57.586 29.630 33.92 2.62 43.31 2.67
3905 4126 7.815398 TCATGAACAATACAATGTTGAATGC 57.185 32.000 0.00 0.00 43.31 3.56
3906 4127 7.376615 TCATGAACAATACAATGTTGAATGCA 58.623 30.769 0.00 0.00 43.31 3.96
3907 4128 7.542824 TCATGAACAATACAATGTTGAATGCAG 59.457 33.333 0.00 0.00 43.31 4.41
3908 4129 6.979465 TGAACAATACAATGTTGAATGCAGA 58.021 32.000 0.00 0.00 43.31 4.26
3909 4130 7.432059 TGAACAATACAATGTTGAATGCAGAA 58.568 30.769 0.00 0.00 43.31 3.02
3910 4131 7.924947 TGAACAATACAATGTTGAATGCAGAAA 59.075 29.630 0.00 0.00 43.31 2.52
3911 4132 8.836268 AACAATACAATGTTGAATGCAGAAAT 57.164 26.923 0.00 0.00 41.78 2.17
3912 4133 8.470040 ACAATACAATGTTGAATGCAGAAATC 57.530 30.769 0.00 0.00 0.00 2.17
3913 4134 8.089597 ACAATACAATGTTGAATGCAGAAATCA 58.910 29.630 0.00 0.00 0.00 2.57
3914 4135 9.093970 CAATACAATGTTGAATGCAGAAATCAT 57.906 29.630 0.00 0.00 0.00 2.45
3916 4137 9.740239 ATACAATGTTGAATGCAGAAATCATAC 57.260 29.630 0.00 0.00 0.00 2.39
3917 4138 7.833786 ACAATGTTGAATGCAGAAATCATACT 58.166 30.769 0.00 0.00 0.00 2.12
3918 4139 7.972277 ACAATGTTGAATGCAGAAATCATACTC 59.028 33.333 0.00 0.00 0.00 2.59
3919 4140 7.876936 ATGTTGAATGCAGAAATCATACTCT 57.123 32.000 0.00 0.00 0.00 3.24
3920 4141 7.692460 TGTTGAATGCAGAAATCATACTCTT 57.308 32.000 0.00 0.00 0.00 2.85
3921 4142 8.114331 TGTTGAATGCAGAAATCATACTCTTT 57.886 30.769 0.00 0.00 0.00 2.52
3922 4143 8.024865 TGTTGAATGCAGAAATCATACTCTTTG 58.975 33.333 0.00 0.00 0.00 2.77
3923 4144 7.692460 TGAATGCAGAAATCATACTCTTTGT 57.308 32.000 0.00 0.00 0.00 2.83
3924 4145 7.755591 TGAATGCAGAAATCATACTCTTTGTC 58.244 34.615 0.00 0.00 0.00 3.18
3925 4146 5.784750 TGCAGAAATCATACTCTTTGTCG 57.215 39.130 0.00 0.00 0.00 4.35
3926 4147 5.237815 TGCAGAAATCATACTCTTTGTCGT 58.762 37.500 0.00 0.00 0.00 4.34
3927 4148 5.348724 TGCAGAAATCATACTCTTTGTCGTC 59.651 40.000 0.00 0.00 0.00 4.20
3928 4149 5.220491 GCAGAAATCATACTCTTTGTCGTCC 60.220 44.000 0.00 0.00 0.00 4.79
3929 4150 5.869344 CAGAAATCATACTCTTTGTCGTCCA 59.131 40.000 0.00 0.00 0.00 4.02
3930 4151 6.536582 CAGAAATCATACTCTTTGTCGTCCAT 59.463 38.462 0.00 0.00 0.00 3.41
3931 4152 6.536582 AGAAATCATACTCTTTGTCGTCCATG 59.463 38.462 0.00 0.00 0.00 3.66
3932 4153 3.521560 TCATACTCTTTGTCGTCCATGC 58.478 45.455 0.00 0.00 0.00 4.06
3933 4154 2.380084 TACTCTTTGTCGTCCATGCC 57.620 50.000 0.00 0.00 0.00 4.40
3934 4155 0.396435 ACTCTTTGTCGTCCATGCCA 59.604 50.000 0.00 0.00 0.00 4.92
3935 4156 1.003580 ACTCTTTGTCGTCCATGCCAT 59.996 47.619 0.00 0.00 0.00 4.40
3936 4157 1.399440 CTCTTTGTCGTCCATGCCATG 59.601 52.381 0.00 0.00 0.00 3.66
3937 4158 0.179156 CTTTGTCGTCCATGCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
3938 4159 1.594194 TTTGTCGTCCATGCCATGCC 61.594 55.000 0.00 0.00 0.00 4.40
3939 4160 3.211963 GTCGTCCATGCCATGCCC 61.212 66.667 0.00 0.00 0.00 5.36
3940 4161 3.726144 TCGTCCATGCCATGCCCA 61.726 61.111 0.00 0.00 0.00 5.36
3941 4162 3.520862 CGTCCATGCCATGCCCAC 61.521 66.667 0.00 0.00 0.00 4.61
3942 4163 3.149648 GTCCATGCCATGCCCACC 61.150 66.667 0.00 0.00 0.00 4.61
3943 4164 3.670319 TCCATGCCATGCCCACCA 61.670 61.111 0.00 0.00 0.00 4.17
3944 4165 3.463585 CCATGCCATGCCCACCAC 61.464 66.667 0.00 0.00 0.00 4.16
3945 4166 3.463585 CATGCCATGCCCACCACC 61.464 66.667 0.00 0.00 0.00 4.61
3946 4167 4.783501 ATGCCATGCCCACCACCC 62.784 66.667 0.00 0.00 0.00 4.61
3948 4169 4.702274 GCCATGCCCACCACCCTT 62.702 66.667 0.00 0.00 0.00 3.95
3949 4170 2.362889 CCATGCCCACCACCCTTC 60.363 66.667 0.00 0.00 0.00 3.46
3950 4171 2.440147 CATGCCCACCACCCTTCA 59.560 61.111 0.00 0.00 0.00 3.02
3951 4172 1.228831 CATGCCCACCACCCTTCAA 60.229 57.895 0.00 0.00 0.00 2.69
3952 4173 0.615544 CATGCCCACCACCCTTCAAT 60.616 55.000 0.00 0.00 0.00 2.57
3953 4174 0.324645 ATGCCCACCACCCTTCAATC 60.325 55.000 0.00 0.00 0.00 2.67
3954 4175 1.076549 GCCCACCACCCTTCAATCA 59.923 57.895 0.00 0.00 0.00 2.57
3955 4176 0.967380 GCCCACCACCCTTCAATCAG 60.967 60.000 0.00 0.00 0.00 2.90
3956 4177 0.698238 CCCACCACCCTTCAATCAGA 59.302 55.000 0.00 0.00 0.00 3.27
3957 4178 1.285962 CCCACCACCCTTCAATCAGAT 59.714 52.381 0.00 0.00 0.00 2.90
3958 4179 2.648059 CCACCACCCTTCAATCAGATC 58.352 52.381 0.00 0.00 0.00 2.75
3959 4180 2.025981 CCACCACCCTTCAATCAGATCA 60.026 50.000 0.00 0.00 0.00 2.92
3960 4181 3.372349 CCACCACCCTTCAATCAGATCAT 60.372 47.826 0.00 0.00 0.00 2.45
3961 4182 4.275810 CACCACCCTTCAATCAGATCATT 58.724 43.478 0.00 0.00 0.00 2.57
3962 4183 4.337555 CACCACCCTTCAATCAGATCATTC 59.662 45.833 0.00 0.00 0.00 2.67
3963 4184 4.229123 ACCACCCTTCAATCAGATCATTCT 59.771 41.667 0.00 0.00 0.00 2.40
3977 4198 6.192234 AGATCATTCTGAAGTTCATTGTGC 57.808 37.500 5.91 2.79 0.00 4.57
3978 4199 4.408993 TCATTCTGAAGTTCATTGTGCG 57.591 40.909 5.91 0.00 0.00 5.34
3979 4200 3.814842 TCATTCTGAAGTTCATTGTGCGT 59.185 39.130 5.91 0.00 0.00 5.24
3980 4201 4.275689 TCATTCTGAAGTTCATTGTGCGTT 59.724 37.500 5.91 0.00 0.00 4.84
3981 4202 3.607422 TCTGAAGTTCATTGTGCGTTG 57.393 42.857 5.91 0.00 0.00 4.10
3982 4203 2.046313 CTGAAGTTCATTGTGCGTTGC 58.954 47.619 5.91 0.00 0.00 4.17
3983 4204 1.044725 GAAGTTCATTGTGCGTTGCG 58.955 50.000 0.00 0.00 0.00 4.85
3984 4205 0.317770 AAGTTCATTGTGCGTTGCGG 60.318 50.000 0.00 0.00 0.00 5.69
3985 4206 1.729131 GTTCATTGTGCGTTGCGGG 60.729 57.895 0.00 0.00 0.00 6.13
3986 4207 1.894282 TTCATTGTGCGTTGCGGGA 60.894 52.632 0.00 0.00 0.00 5.14
3987 4208 2.123988 TTCATTGTGCGTTGCGGGAC 62.124 55.000 0.00 0.00 0.00 4.46
4008 4229 2.105006 CCGAATGGCATGATAGGAGG 57.895 55.000 0.00 0.00 0.00 4.30
4009 4230 1.446907 CGAATGGCATGATAGGAGGC 58.553 55.000 0.00 0.00 0.00 4.70
4010 4231 1.271001 CGAATGGCATGATAGGAGGCA 60.271 52.381 0.00 0.00 42.19 4.75
4011 4232 2.811504 CGAATGGCATGATAGGAGGCAA 60.812 50.000 0.00 0.00 41.29 4.52
4012 4233 3.428532 GAATGGCATGATAGGAGGCAAT 58.571 45.455 0.00 0.00 41.29 3.56
4013 4234 4.592942 GAATGGCATGATAGGAGGCAATA 58.407 43.478 0.00 0.00 41.29 1.90
4014 4235 4.662966 ATGGCATGATAGGAGGCAATAA 57.337 40.909 0.00 0.00 41.29 1.40
4015 4236 4.451891 TGGCATGATAGGAGGCAATAAA 57.548 40.909 0.00 0.00 34.72 1.40
4016 4237 4.802307 TGGCATGATAGGAGGCAATAAAA 58.198 39.130 0.00 0.00 34.72 1.52
4017 4238 4.584325 TGGCATGATAGGAGGCAATAAAAC 59.416 41.667 0.00 0.00 34.72 2.43
4018 4239 4.320494 GGCATGATAGGAGGCAATAAAACG 60.320 45.833 0.00 0.00 0.00 3.60
4019 4240 4.320494 GCATGATAGGAGGCAATAAAACGG 60.320 45.833 0.00 0.00 0.00 4.44
4020 4241 3.815809 TGATAGGAGGCAATAAAACGGG 58.184 45.455 0.00 0.00 0.00 5.28
4021 4242 2.047002 TAGGAGGCAATAAAACGGGC 57.953 50.000 0.00 0.00 0.00 6.13
4022 4243 0.331616 AGGAGGCAATAAAACGGGCT 59.668 50.000 0.00 0.00 40.45 5.19
4023 4244 1.562475 AGGAGGCAATAAAACGGGCTA 59.438 47.619 0.00 0.00 37.58 3.93
4024 4245 1.674441 GGAGGCAATAAAACGGGCTAC 59.326 52.381 0.00 0.00 37.58 3.58
4025 4246 1.674441 GAGGCAATAAAACGGGCTACC 59.326 52.381 0.00 0.00 37.58 3.18
4026 4247 0.742505 GGCAATAAAACGGGCTACCC 59.257 55.000 0.00 0.00 41.09 3.69
4027 4248 1.683938 GGCAATAAAACGGGCTACCCT 60.684 52.381 0.32 0.00 42.67 4.34
4028 4249 2.097036 GCAATAAAACGGGCTACCCTT 58.903 47.619 0.32 0.00 42.67 3.95
4029 4250 2.494471 GCAATAAAACGGGCTACCCTTT 59.506 45.455 0.32 0.00 42.67 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.997021 CTGATTTTGTCGAGTACTTGCCT 59.003 43.478 5.12 0.00 0.00 4.75
41 42 3.436704 CCTCACACATCATTTTGTACGCT 59.563 43.478 0.00 0.00 0.00 5.07
240 243 5.382616 ACATTGCATGAGTATGTGATCCAT 58.617 37.500 0.00 0.00 36.65 3.41
431 434 5.301298 GCCATTTCTCTGCTTCCATAGATTT 59.699 40.000 0.00 0.00 0.00 2.17
499 502 1.002087 GTTCCTGGTGGACAAGATCGT 59.998 52.381 0.00 0.00 43.06 3.73
537 540 2.606751 AGAACTCCTTTCCCTCTCGA 57.393 50.000 0.00 0.00 34.32 4.04
547 550 9.924010 ACTACTCTATACAATGTAGAACTCCTT 57.076 33.333 0.00 0.00 36.73 3.36
561 564 5.221601 ACACGCTAGGCTACTACTCTATACA 60.222 44.000 0.00 0.00 0.00 2.29
597 600 0.739462 CACACGGTATGCACGTCCAT 60.739 55.000 0.00 0.00 43.58 3.41
609 612 2.346803 GAATGCACTATCACACACGGT 58.653 47.619 0.00 0.00 0.00 4.83
619 627 3.728076 ACATACGACGGAATGCACTAT 57.272 42.857 11.13 0.00 0.00 2.12
675 684 1.097232 GTACCCAAATTGCGTACCCC 58.903 55.000 9.19 0.00 0.00 4.95
676 685 0.728542 CGTACCCAAATTGCGTACCC 59.271 55.000 13.39 0.00 30.74 3.69
690 699 3.771798 AGAGCTCGATTTTTCTCGTACC 58.228 45.455 8.37 0.00 39.62 3.34
695 704 4.932200 TCCTCAAAGAGCTCGATTTTTCTC 59.068 41.667 8.37 0.00 0.00 2.87
696 705 4.899502 TCCTCAAAGAGCTCGATTTTTCT 58.100 39.130 8.37 0.00 0.00 2.52
697 706 5.613358 TTCCTCAAAGAGCTCGATTTTTC 57.387 39.130 8.37 0.00 0.00 2.29
698 707 5.563671 GCTTTCCTCAAAGAGCTCGATTTTT 60.564 40.000 8.37 0.00 41.60 1.94
699 708 4.083057 GCTTTCCTCAAAGAGCTCGATTTT 60.083 41.667 8.37 0.39 41.60 1.82
700 709 3.438434 GCTTTCCTCAAAGAGCTCGATTT 59.562 43.478 8.37 1.20 41.60 2.17
701 710 3.006247 GCTTTCCTCAAAGAGCTCGATT 58.994 45.455 8.37 4.97 41.60 3.34
702 711 2.626840 GCTTTCCTCAAAGAGCTCGAT 58.373 47.619 8.37 0.00 41.60 3.59
708 717 1.238439 TTGCCGCTTTCCTCAAAGAG 58.762 50.000 0.00 0.00 41.60 2.85
753 762 4.374702 GCAAGGACGCACGCACTG 62.375 66.667 0.00 0.00 0.00 3.66
782 791 2.387952 AGGAACGGCCTCTTTCCAT 58.612 52.632 22.82 10.34 46.97 3.41
845 859 4.473520 ATCTGGGCTTGGGCGTCG 62.474 66.667 0.00 0.00 39.81 5.12
853 867 3.023735 GGGGGTGGATCTGGGCTT 61.024 66.667 0.00 0.00 0.00 4.35
854 868 4.369591 TGGGGGTGGATCTGGGCT 62.370 66.667 0.00 0.00 0.00 5.19
855 869 4.129148 GTGGGGGTGGATCTGGGC 62.129 72.222 0.00 0.00 0.00 5.36
856 870 3.797353 CGTGGGGGTGGATCTGGG 61.797 72.222 0.00 0.00 0.00 4.45
857 871 4.489771 GCGTGGGGGTGGATCTGG 62.490 72.222 0.00 0.00 0.00 3.86
858 872 4.838152 CGCGTGGGGGTGGATCTG 62.838 72.222 0.00 0.00 0.00 2.90
860 874 4.832608 GTCGCGTGGGGGTGGATC 62.833 72.222 5.77 0.00 0.00 3.36
929 957 1.134907 GGGATACGTGTGTGGTACTGG 60.135 57.143 0.00 0.00 37.60 4.00
930 958 1.134907 GGGGATACGTGTGTGGTACTG 60.135 57.143 0.00 0.00 37.60 2.74
931 959 1.188863 GGGGATACGTGTGTGGTACT 58.811 55.000 0.00 0.00 37.60 2.73
932 960 0.896923 TGGGGATACGTGTGTGGTAC 59.103 55.000 0.00 0.00 37.60 3.34
933 961 0.896923 GTGGGGATACGTGTGTGGTA 59.103 55.000 0.00 0.00 37.60 3.25
934 962 1.675219 GTGGGGATACGTGTGTGGT 59.325 57.895 0.00 0.00 37.60 4.16
1050 1078 1.203075 AGGGAGAAGAACCAGACGAGT 60.203 52.381 0.00 0.00 0.00 4.18
1179 1207 0.657840 CCTTGTCCGGATCGCATTTC 59.342 55.000 7.81 0.00 0.00 2.17
1326 1354 2.530151 TGCAGGTTGAGCCCTCCT 60.530 61.111 0.00 0.00 38.26 3.69
1704 1732 1.787847 GTCCTTGTCGATGTTGGCG 59.212 57.895 0.00 0.00 0.00 5.69
1920 1952 9.161629 GCAAGTTTTAAAACCAAATGGCTATAT 57.838 29.630 24.06 1.75 39.71 0.86
1921 1953 8.371699 AGCAAGTTTTAAAACCAAATGGCTATA 58.628 29.630 24.06 0.00 39.71 1.31
1922 1954 7.223584 AGCAAGTTTTAAAACCAAATGGCTAT 58.776 30.769 24.06 2.41 39.71 2.97
1923 1955 6.587273 AGCAAGTTTTAAAACCAAATGGCTA 58.413 32.000 24.06 0.00 39.71 3.93
1924 1956 5.436175 AGCAAGTTTTAAAACCAAATGGCT 58.564 33.333 24.06 17.61 39.71 4.75
1925 1957 5.749596 AGCAAGTTTTAAAACCAAATGGC 57.250 34.783 24.06 15.90 39.71 4.40
1926 1958 6.471841 GCAAAGCAAGTTTTAAAACCAAATGG 59.528 34.615 24.06 11.89 39.71 3.16
1927 1959 7.025963 TGCAAAGCAAGTTTTAAAACCAAATG 58.974 30.769 24.06 18.56 34.87 2.32
1928 1960 7.150783 TGCAAAGCAAGTTTTAAAACCAAAT 57.849 28.000 24.06 6.15 34.87 2.32
1929 1961 6.560253 TGCAAAGCAAGTTTTAAAACCAAA 57.440 29.167 24.06 1.55 34.87 3.28
1962 1994 7.283127 GCAAACATTCTCAAATCTATGTAGGGA 59.717 37.037 0.00 0.00 31.40 4.20
2142 2189 6.357579 ACAAGGCAATCCAATGACAATTAA 57.642 33.333 0.00 0.00 33.74 1.40
2149 2196 3.499338 AGTGAACAAGGCAATCCAATGA 58.501 40.909 0.00 0.00 33.74 2.57
2189 2237 3.553511 GTCACATGAAAGAGGTGATAGCG 59.446 47.826 0.00 0.00 42.81 4.26
2198 2282 6.692486 AGTAGGTAACAGTCACATGAAAGAG 58.308 40.000 0.00 0.00 41.41 2.85
2292 2487 6.266168 AGCGACAATCACAATTTTGGATTA 57.734 33.333 0.00 0.00 31.47 1.75
2367 2563 6.015504 CGGTTTTCAGACAGTCAATAATTCG 58.984 40.000 2.66 0.00 0.00 3.34
2391 2587 7.178274 ACATAGATCATACATTCTCAGGACCTC 59.822 40.741 0.00 0.00 0.00 3.85
2480 2676 6.657966 TGAGAAGATAGTAAAGTTCCTGTCGA 59.342 38.462 0.00 0.00 0.00 4.20
2534 2730 1.086696 CATTACCAGCCACACTTCCG 58.913 55.000 0.00 0.00 0.00 4.30
2633 2829 6.015856 AGTGACTGACTATGGAATCGAATAGG 60.016 42.308 6.76 0.00 30.86 2.57
2789 2985 2.912956 TGTCCACTCTTCTGGGCTTATT 59.087 45.455 0.00 0.00 36.80 1.40
2812 3008 2.441375 TCCCTCAGTTTGTTCCACATGA 59.559 45.455 0.00 0.00 0.00 3.07
3092 3288 1.271054 TGAGGTTCAAGCTCAGCTTCC 60.271 52.381 15.45 8.33 46.77 3.46
3171 3367 7.093902 GGTCCTCGGATCTGTAATATTGTGATA 60.094 40.741 0.42 0.00 0.00 2.15
3195 3392 4.453480 TGGAGGAGAACAAAAATCAGGT 57.547 40.909 0.00 0.00 0.00 4.00
3286 3483 3.315470 CAGTAATCACGCTACTGCCTAGA 59.685 47.826 0.00 0.00 39.75 2.43
3331 3528 3.641906 AGTTACACCTGTGAAGTAGTGCT 59.358 43.478 3.94 0.00 33.46 4.40
3332 3529 3.988517 GAGTTACACCTGTGAAGTAGTGC 59.011 47.826 3.94 0.00 33.46 4.40
3333 3530 4.557205 GGAGTTACACCTGTGAAGTAGTG 58.443 47.826 3.94 0.00 36.30 2.74
3453 3650 3.508793 CAGCAATTCTTGTCATTGACCCT 59.491 43.478 14.05 0.00 34.05 4.34
3459 3656 4.038282 TGAACAGCAGCAATTCTTGTCATT 59.962 37.500 9.41 0.00 0.00 2.57
3500 3697 0.535102 CCAAGAAGGCAACGACCTGT 60.535 55.000 0.00 0.00 39.93 4.00
3502 3699 1.053424 TACCAAGAAGGCAACGACCT 58.947 50.000 0.00 0.00 43.91 3.85
3503 3700 1.534163 GTTACCAAGAAGGCAACGACC 59.466 52.381 0.00 0.00 43.14 4.79
3504 3701 2.490991 AGTTACCAAGAAGGCAACGAC 58.509 47.619 0.00 0.00 46.48 4.34
3505 3702 2.922740 AGTTACCAAGAAGGCAACGA 57.077 45.000 0.00 0.00 46.48 3.85
3506 3703 4.671766 GCAATAGTTACCAAGAAGGCAACG 60.672 45.833 0.00 0.00 46.48 4.10
3507 3704 4.459337 AGCAATAGTTACCAAGAAGGCAAC 59.541 41.667 0.00 0.00 42.96 4.17
3508 3705 4.662278 AGCAATAGTTACCAAGAAGGCAA 58.338 39.130 0.00 0.00 43.14 4.52
3510 3707 6.768381 AGATAAGCAATAGTTACCAAGAAGGC 59.232 38.462 0.00 0.00 43.14 4.35
3511 3708 7.987458 TCAGATAAGCAATAGTTACCAAGAAGG 59.013 37.037 0.00 0.00 45.67 3.46
3512 3709 8.948631 TCAGATAAGCAATAGTTACCAAGAAG 57.051 34.615 0.00 0.00 0.00 2.85
3530 3739 5.114764 TGTCAATTGCCCAGATCAGATAA 57.885 39.130 0.00 0.00 0.00 1.75
3549 3758 1.562783 AGGAGTCTACCTGGCTTGTC 58.437 55.000 0.00 0.00 39.01 3.18
3562 3783 1.376553 GCAAGGGCAGTCAGGAGTC 60.377 63.158 0.00 0.00 40.72 3.36
3576 3797 3.515286 CCATGAGGCAGCCGCAAG 61.515 66.667 22.91 17.68 36.81 4.01
3597 3818 2.291605 TGCTCTTAGTACAGAGGCCAGA 60.292 50.000 5.01 0.00 40.79 3.86
3598 3819 2.103373 TGCTCTTAGTACAGAGGCCAG 58.897 52.381 5.01 0.00 40.79 4.85
3599 3820 2.231716 TGCTCTTAGTACAGAGGCCA 57.768 50.000 5.01 0.94 40.79 5.36
3600 3821 2.962421 AGATGCTCTTAGTACAGAGGCC 59.038 50.000 11.15 0.00 40.79 5.19
3601 3822 3.005367 GGAGATGCTCTTAGTACAGAGGC 59.995 52.174 11.15 7.02 40.79 4.70
3602 3823 4.211125 TGGAGATGCTCTTAGTACAGAGG 58.789 47.826 11.15 0.00 40.79 3.69
3603 3824 5.126222 TGTTGGAGATGCTCTTAGTACAGAG 59.874 44.000 5.97 5.97 43.02 3.35
3604 3825 5.016831 TGTTGGAGATGCTCTTAGTACAGA 58.983 41.667 0.00 0.00 0.00 3.41
3605 3826 5.330455 TGTTGGAGATGCTCTTAGTACAG 57.670 43.478 0.00 0.00 0.00 2.74
3606 3827 4.382040 GCTGTTGGAGATGCTCTTAGTACA 60.382 45.833 0.00 0.00 0.00 2.90
3607 3828 4.116238 GCTGTTGGAGATGCTCTTAGTAC 58.884 47.826 0.00 0.00 0.00 2.73
3608 3829 3.133003 GGCTGTTGGAGATGCTCTTAGTA 59.867 47.826 0.00 0.00 0.00 1.82
3609 3830 2.093235 GGCTGTTGGAGATGCTCTTAGT 60.093 50.000 0.00 0.00 0.00 2.24
3610 3831 2.559440 GGCTGTTGGAGATGCTCTTAG 58.441 52.381 0.00 0.00 0.00 2.18
3611 3832 1.134699 CGGCTGTTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
3612 3833 0.392193 CGGCTGTTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
3613 3834 1.220206 CGGCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
3614 3835 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
3615 3836 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
3616 3837 3.512516 GGCGGCTGTTGGAGATGC 61.513 66.667 0.00 0.00 0.00 3.91
3617 3838 2.110967 CAGGCGGCTGTTGGAGATG 61.111 63.158 29.42 2.52 0.00 2.90
3618 3839 2.129555 AACAGGCGGCTGTTGGAGAT 62.130 55.000 44.70 27.28 44.79 2.75
3619 3840 2.337879 AAACAGGCGGCTGTTGGAGA 62.338 55.000 45.34 0.00 45.64 3.71
3620 3841 1.898574 AAACAGGCGGCTGTTGGAG 60.899 57.895 45.34 22.07 45.64 3.86
3621 3842 2.192861 CAAACAGGCGGCTGTTGGA 61.193 57.895 45.34 0.00 45.64 3.53
3622 3843 2.336088 CAAACAGGCGGCTGTTGG 59.664 61.111 45.34 40.71 45.64 3.77
3623 3844 2.355009 GCAAACAGGCGGCTGTTG 60.355 61.111 45.34 37.25 45.64 3.33
3645 3866 3.083600 CTAAACCAGCCGAAGCGCG 62.084 63.158 0.00 0.00 46.67 6.86
3646 3867 2.785258 CTAAACCAGCCGAAGCGC 59.215 61.111 0.00 0.00 46.67 5.92
3647 3868 2.785258 GCTAAACCAGCCGAAGCG 59.215 61.111 0.00 0.00 45.23 4.68
3655 3876 0.944386 ATAATGCCGCGCTAAACCAG 59.056 50.000 5.56 0.00 0.00 4.00
3656 3877 2.242047 TATAATGCCGCGCTAAACCA 57.758 45.000 5.56 0.00 0.00 3.67
3657 3878 3.488489 CATTATAATGCCGCGCTAAACC 58.512 45.455 12.38 0.00 0.00 3.27
3669 3890 2.300914 CGCGTGCTGTGCATTATAATG 58.699 47.619 19.29 19.29 41.91 1.90
3670 3891 2.668617 CGCGTGCTGTGCATTATAAT 57.331 45.000 0.00 0.00 41.91 1.28
3693 3914 1.209128 ATTTTGACGCGCTATCGGAG 58.791 50.000 5.73 0.00 35.95 4.63
3694 3915 2.121786 GTATTTTGACGCGCTATCGGA 58.878 47.619 5.73 0.00 35.95 4.55
3695 3916 1.855978 TGTATTTTGACGCGCTATCGG 59.144 47.619 5.73 0.00 35.95 4.18
3696 3917 2.656632 GCTGTATTTTGACGCGCTATCG 60.657 50.000 5.73 0.00 39.07 2.92
3697 3918 2.656632 CGCTGTATTTTGACGCGCTATC 60.657 50.000 5.73 3.35 36.28 2.08
3698 3919 1.257936 CGCTGTATTTTGACGCGCTAT 59.742 47.619 5.73 0.00 36.28 2.97
3699 3920 0.643310 CGCTGTATTTTGACGCGCTA 59.357 50.000 5.73 0.00 36.28 4.26
3700 3921 1.289109 ACGCTGTATTTTGACGCGCT 61.289 50.000 5.73 0.00 42.17 5.92
3701 3922 1.120147 CACGCTGTATTTTGACGCGC 61.120 55.000 5.73 0.00 42.17 6.86
3702 3923 1.120147 GCACGCTGTATTTTGACGCG 61.120 55.000 3.53 3.53 43.21 6.01
3703 3924 1.120147 CGCACGCTGTATTTTGACGC 61.120 55.000 0.00 0.00 0.00 5.19
3704 3925 1.120147 GCGCACGCTGTATTTTGACG 61.120 55.000 7.96 0.00 38.26 4.35
3705 3926 0.793104 GGCGCACGCTGTATTTTGAC 60.793 55.000 15.36 0.00 41.60 3.18
3706 3927 1.499949 GGCGCACGCTGTATTTTGA 59.500 52.632 15.36 0.00 41.60 2.69
3707 3928 1.863012 CGGCGCACGCTGTATTTTG 60.863 57.895 15.50 0.00 42.19 2.44
3708 3929 2.478746 CGGCGCACGCTGTATTTT 59.521 55.556 15.50 0.00 42.19 1.82
3720 3941 2.265073 ATATGTGGTTTGTGCGGCGC 62.265 55.000 27.44 27.44 0.00 6.53
3721 3942 1.010580 TATATGTGGTTTGTGCGGCG 58.989 50.000 0.51 0.51 0.00 6.46
3722 3943 1.740585 TGTATATGTGGTTTGTGCGGC 59.259 47.619 0.00 0.00 0.00 6.53
3723 3944 4.630894 AATGTATATGTGGTTTGTGCGG 57.369 40.909 0.00 0.00 0.00 5.69
3724 3945 5.635866 TGAAATGTATATGTGGTTTGTGCG 58.364 37.500 0.00 0.00 0.00 5.34
3725 3946 7.881643 TTTGAAATGTATATGTGGTTTGTGC 57.118 32.000 0.00 0.00 0.00 4.57
3748 3969 7.338957 TGTTTGATCATTTTTGCTTCCCTTTTT 59.661 29.630 0.00 0.00 0.00 1.94
3749 3970 6.827762 TGTTTGATCATTTTTGCTTCCCTTTT 59.172 30.769 0.00 0.00 0.00 2.27
3750 3971 6.355747 TGTTTGATCATTTTTGCTTCCCTTT 58.644 32.000 0.00 0.00 0.00 3.11
3751 3972 5.927819 TGTTTGATCATTTTTGCTTCCCTT 58.072 33.333 0.00 0.00 0.00 3.95
3752 3973 5.549742 TGTTTGATCATTTTTGCTTCCCT 57.450 34.783 0.00 0.00 0.00 4.20
3753 3974 6.038050 TGTTTGTTTGATCATTTTTGCTTCCC 59.962 34.615 0.00 0.00 0.00 3.97
3754 3975 7.014092 TGTTTGTTTGATCATTTTTGCTTCC 57.986 32.000 0.00 0.00 0.00 3.46
3755 3976 8.892887 TTTGTTTGTTTGATCATTTTTGCTTC 57.107 26.923 0.00 0.00 0.00 3.86
3756 3977 9.857957 ATTTTGTTTGTTTGATCATTTTTGCTT 57.142 22.222 0.00 0.00 0.00 3.91
3799 4020 9.820229 TGAGTTGTAATGATAACGAAATTGAAC 57.180 29.630 0.00 0.00 32.26 3.18
3827 4048 9.263538 TGTTGTACTGAACGATAAACTATTTGT 57.736 29.630 0.00 0.00 0.00 2.83
3835 4056 9.549509 GCATTATTTGTTGTACTGAACGATAAA 57.450 29.630 0.00 0.00 37.10 1.40
3836 4057 8.722394 TGCATTATTTGTTGTACTGAACGATAA 58.278 29.630 0.00 1.80 0.00 1.75
3837 4058 8.257830 TGCATTATTTGTTGTACTGAACGATA 57.742 30.769 0.00 0.00 0.00 2.92
3838 4059 7.139896 TGCATTATTTGTTGTACTGAACGAT 57.860 32.000 0.00 0.00 0.00 3.73
3839 4060 6.546972 TGCATTATTTGTTGTACTGAACGA 57.453 33.333 0.00 0.00 0.00 3.85
3840 4061 7.795431 ATTGCATTATTTGTTGTACTGAACG 57.205 32.000 0.00 0.00 0.00 3.95
3845 4066 9.973450 TGTGTTTATTGCATTATTTGTTGTACT 57.027 25.926 0.00 0.00 0.00 2.73
3848 4069 9.102757 TGTTGTGTTTATTGCATTATTTGTTGT 57.897 25.926 0.00 0.00 0.00 3.32
3849 4070 9.926751 TTGTTGTGTTTATTGCATTATTTGTTG 57.073 25.926 0.00 0.00 0.00 3.33
3857 4078 9.539825 TGAACTATTTGTTGTGTTTATTGCATT 57.460 25.926 0.00 0.00 39.30 3.56
3858 4079 9.709495 ATGAACTATTTGTTGTGTTTATTGCAT 57.291 25.926 0.00 0.00 39.30 3.96
3859 4080 8.976471 CATGAACTATTTGTTGTGTTTATTGCA 58.024 29.630 0.00 0.00 39.30 4.08
3860 4081 9.190858 TCATGAACTATTTGTTGTGTTTATTGC 57.809 29.630 0.00 0.00 39.30 3.56
3865 4086 8.994429 TTGTTCATGAACTATTTGTTGTGTTT 57.006 26.923 32.57 0.00 41.67 2.83
3867 4088 9.677567 GTATTGTTCATGAACTATTTGTTGTGT 57.322 29.630 31.04 13.92 41.67 3.72
3868 4089 9.676195 TGTATTGTTCATGAACTATTTGTTGTG 57.324 29.630 31.04 0.00 41.67 3.33
3878 4099 9.414295 CATTCAACATTGTATTGTTCATGAACT 57.586 29.630 32.57 19.73 41.67 3.01
3879 4100 8.164153 GCATTCAACATTGTATTGTTCATGAAC 58.836 33.333 28.10 28.10 37.73 3.18
3880 4101 7.871463 TGCATTCAACATTGTATTGTTCATGAA 59.129 29.630 3.38 3.38 37.73 2.57
3881 4102 7.376615 TGCATTCAACATTGTATTGTTCATGA 58.623 30.769 0.00 0.00 37.73 3.07
3882 4103 7.542824 TCTGCATTCAACATTGTATTGTTCATG 59.457 33.333 0.00 0.00 37.73 3.07
3883 4104 7.604549 TCTGCATTCAACATTGTATTGTTCAT 58.395 30.769 0.00 0.00 37.73 2.57
3884 4105 6.979465 TCTGCATTCAACATTGTATTGTTCA 58.021 32.000 0.00 0.00 37.73 3.18
3885 4106 7.872163 TTCTGCATTCAACATTGTATTGTTC 57.128 32.000 0.00 0.00 37.73 3.18
3886 4107 8.836268 ATTTCTGCATTCAACATTGTATTGTT 57.164 26.923 0.00 0.00 40.39 2.83
3887 4108 8.089597 TGATTTCTGCATTCAACATTGTATTGT 58.910 29.630 0.00 0.00 0.00 2.71
3888 4109 8.468720 TGATTTCTGCATTCAACATTGTATTG 57.531 30.769 0.00 0.00 0.00 1.90
3890 4111 9.740239 GTATGATTTCTGCATTCAACATTGTAT 57.260 29.630 0.00 0.00 0.00 2.29
3891 4112 8.959548 AGTATGATTTCTGCATTCAACATTGTA 58.040 29.630 0.00 0.00 0.00 2.41
3892 4113 7.833786 AGTATGATTTCTGCATTCAACATTGT 58.166 30.769 0.00 0.00 0.00 2.71
3893 4114 8.188799 AGAGTATGATTTCTGCATTCAACATTG 58.811 33.333 0.00 0.00 0.00 2.82
3894 4115 8.289939 AGAGTATGATTTCTGCATTCAACATT 57.710 30.769 0.00 0.00 0.00 2.71
3895 4116 7.876936 AGAGTATGATTTCTGCATTCAACAT 57.123 32.000 0.00 0.00 0.00 2.71
3896 4117 7.692460 AAGAGTATGATTTCTGCATTCAACA 57.308 32.000 0.00 0.00 0.00 3.33
3897 4118 8.025445 ACAAAGAGTATGATTTCTGCATTCAAC 58.975 33.333 0.00 0.00 0.00 3.18
3898 4119 8.114331 ACAAAGAGTATGATTTCTGCATTCAA 57.886 30.769 0.00 0.00 0.00 2.69
3899 4120 7.413328 CGACAAAGAGTATGATTTCTGCATTCA 60.413 37.037 0.00 0.00 0.00 2.57
3900 4121 6.904011 CGACAAAGAGTATGATTTCTGCATTC 59.096 38.462 0.00 0.00 0.00 2.67
3901 4122 6.372659 ACGACAAAGAGTATGATTTCTGCATT 59.627 34.615 0.00 0.00 0.00 3.56
3902 4123 5.877012 ACGACAAAGAGTATGATTTCTGCAT 59.123 36.000 0.00 0.00 0.00 3.96
3903 4124 5.237815 ACGACAAAGAGTATGATTTCTGCA 58.762 37.500 0.00 0.00 0.00 4.41
3904 4125 5.220491 GGACGACAAAGAGTATGATTTCTGC 60.220 44.000 0.00 0.00 0.00 4.26
3905 4126 5.869344 TGGACGACAAAGAGTATGATTTCTG 59.131 40.000 0.00 0.00 0.00 3.02
3906 4127 6.037786 TGGACGACAAAGAGTATGATTTCT 57.962 37.500 0.00 0.00 0.00 2.52
3907 4128 6.709643 CATGGACGACAAAGAGTATGATTTC 58.290 40.000 0.00 0.00 0.00 2.17
3908 4129 5.065218 GCATGGACGACAAAGAGTATGATTT 59.935 40.000 0.00 0.00 0.00 2.17
3909 4130 4.572389 GCATGGACGACAAAGAGTATGATT 59.428 41.667 0.00 0.00 0.00 2.57
3910 4131 4.122776 GCATGGACGACAAAGAGTATGAT 58.877 43.478 0.00 0.00 0.00 2.45
3911 4132 3.521560 GCATGGACGACAAAGAGTATGA 58.478 45.455 0.00 0.00 0.00 2.15
3912 4133 2.609459 GGCATGGACGACAAAGAGTATG 59.391 50.000 0.00 0.00 0.00 2.39
3913 4134 2.236146 TGGCATGGACGACAAAGAGTAT 59.764 45.455 0.00 0.00 0.00 2.12
3914 4135 1.621317 TGGCATGGACGACAAAGAGTA 59.379 47.619 0.00 0.00 0.00 2.59
3915 4136 0.396435 TGGCATGGACGACAAAGAGT 59.604 50.000 0.00 0.00 0.00 3.24
3916 4137 1.399440 CATGGCATGGACGACAAAGAG 59.601 52.381 19.80 0.00 0.00 2.85
3917 4138 1.452110 CATGGCATGGACGACAAAGA 58.548 50.000 19.80 0.00 0.00 2.52
3918 4139 0.179156 GCATGGCATGGACGACAAAG 60.179 55.000 27.48 0.00 0.00 2.77
3919 4140 1.594194 GGCATGGCATGGACGACAAA 61.594 55.000 27.48 0.00 0.00 2.83
3920 4141 2.045708 GGCATGGCATGGACGACAA 61.046 57.895 27.48 0.00 0.00 3.18
3921 4142 2.438254 GGCATGGCATGGACGACA 60.438 61.111 27.48 0.00 0.00 4.35
3922 4143 3.211963 GGGCATGGCATGGACGAC 61.212 66.667 27.48 11.14 0.00 4.34
3923 4144 3.726144 TGGGCATGGCATGGACGA 61.726 61.111 27.48 6.50 0.00 4.20
3924 4145 3.520862 GTGGGCATGGCATGGACG 61.521 66.667 27.48 3.82 0.00 4.79
3925 4146 3.149648 GGTGGGCATGGCATGGAC 61.150 66.667 27.48 12.58 0.00 4.02
3926 4147 3.670319 TGGTGGGCATGGCATGGA 61.670 61.111 27.48 0.00 0.00 3.41
3927 4148 3.463585 GTGGTGGGCATGGCATGG 61.464 66.667 27.48 10.64 0.00 3.66
3928 4149 3.463585 GGTGGTGGGCATGGCATG 61.464 66.667 22.99 22.99 0.00 4.06
3929 4150 4.783501 GGGTGGTGGGCATGGCAT 62.784 66.667 22.06 0.00 0.00 4.40
3931 4152 4.702274 AAGGGTGGTGGGCATGGC 62.702 66.667 11.56 11.56 0.00 4.40
3932 4153 2.362889 GAAGGGTGGTGGGCATGG 60.363 66.667 0.00 0.00 0.00 3.66
3933 4154 0.615544 ATTGAAGGGTGGTGGGCATG 60.616 55.000 0.00 0.00 0.00 4.06
3934 4155 0.324645 GATTGAAGGGTGGTGGGCAT 60.325 55.000 0.00 0.00 0.00 4.40
3935 4156 1.076549 GATTGAAGGGTGGTGGGCA 59.923 57.895 0.00 0.00 0.00 5.36
3936 4157 0.967380 CTGATTGAAGGGTGGTGGGC 60.967 60.000 0.00 0.00 0.00 5.36
3937 4158 0.698238 TCTGATTGAAGGGTGGTGGG 59.302 55.000 0.00 0.00 0.00 4.61
3938 4159 2.025981 TGATCTGATTGAAGGGTGGTGG 60.026 50.000 0.00 0.00 0.00 4.61
3939 4160 3.354948 TGATCTGATTGAAGGGTGGTG 57.645 47.619 0.00 0.00 0.00 4.17
3940 4161 4.229123 AGAATGATCTGATTGAAGGGTGGT 59.771 41.667 0.00 0.00 33.59 4.16
3941 4162 4.789807 AGAATGATCTGATTGAAGGGTGG 58.210 43.478 0.00 0.00 33.59 4.61
3958 4179 4.151258 ACGCACAATGAACTTCAGAATG 57.849 40.909 0.00 0.03 37.54 2.67
3959 4180 4.539870 CAACGCACAATGAACTTCAGAAT 58.460 39.130 0.00 0.00 0.00 2.40
3960 4181 3.791789 GCAACGCACAATGAACTTCAGAA 60.792 43.478 0.00 0.00 0.00 3.02
3961 4182 2.286950 GCAACGCACAATGAACTTCAGA 60.287 45.455 0.00 0.00 0.00 3.27
3962 4183 2.046313 GCAACGCACAATGAACTTCAG 58.954 47.619 0.00 0.00 0.00 3.02
3963 4184 1.596709 CGCAACGCACAATGAACTTCA 60.597 47.619 0.00 0.00 0.00 3.02
3964 4185 1.044725 CGCAACGCACAATGAACTTC 58.955 50.000 0.00 0.00 0.00 3.01
3965 4186 0.317770 CCGCAACGCACAATGAACTT 60.318 50.000 0.00 0.00 0.00 2.66
3966 4187 1.282570 CCGCAACGCACAATGAACT 59.717 52.632 0.00 0.00 0.00 3.01
3967 4188 1.729131 CCCGCAACGCACAATGAAC 60.729 57.895 0.00 0.00 0.00 3.18
3968 4189 1.894282 TCCCGCAACGCACAATGAA 60.894 52.632 0.00 0.00 0.00 2.57
3969 4190 2.281139 TCCCGCAACGCACAATGA 60.281 55.556 0.00 0.00 0.00 2.57
3970 4191 2.126888 GTCCCGCAACGCACAATG 60.127 61.111 0.00 0.00 0.00 2.82
3971 4192 3.722295 CGTCCCGCAACGCACAAT 61.722 61.111 0.00 0.00 35.64 2.71
3989 4210 1.947678 GCCTCCTATCATGCCATTCGG 60.948 57.143 0.00 0.00 0.00 4.30
3990 4211 1.271001 TGCCTCCTATCATGCCATTCG 60.271 52.381 0.00 0.00 0.00 3.34
3991 4212 2.574006 TGCCTCCTATCATGCCATTC 57.426 50.000 0.00 0.00 0.00 2.67
3992 4213 3.537795 ATTGCCTCCTATCATGCCATT 57.462 42.857 0.00 0.00 0.00 3.16
3993 4214 4.662966 TTATTGCCTCCTATCATGCCAT 57.337 40.909 0.00 0.00 0.00 4.40
3994 4215 4.451891 TTTATTGCCTCCTATCATGCCA 57.548 40.909 0.00 0.00 0.00 4.92
3995 4216 4.320494 CGTTTTATTGCCTCCTATCATGCC 60.320 45.833 0.00 0.00 0.00 4.40
3996 4217 4.320494 CCGTTTTATTGCCTCCTATCATGC 60.320 45.833 0.00 0.00 0.00 4.06
3997 4218 4.216257 CCCGTTTTATTGCCTCCTATCATG 59.784 45.833 0.00 0.00 0.00 3.07
3998 4219 4.398319 CCCGTTTTATTGCCTCCTATCAT 58.602 43.478 0.00 0.00 0.00 2.45
3999 4220 3.815809 CCCGTTTTATTGCCTCCTATCA 58.184 45.455 0.00 0.00 0.00 2.15
4000 4221 2.552743 GCCCGTTTTATTGCCTCCTATC 59.447 50.000 0.00 0.00 0.00 2.08
4001 4222 2.174854 AGCCCGTTTTATTGCCTCCTAT 59.825 45.455 0.00 0.00 0.00 2.57
4002 4223 1.562475 AGCCCGTTTTATTGCCTCCTA 59.438 47.619 0.00 0.00 0.00 2.94
4003 4224 0.331616 AGCCCGTTTTATTGCCTCCT 59.668 50.000 0.00 0.00 0.00 3.69
4004 4225 1.674441 GTAGCCCGTTTTATTGCCTCC 59.326 52.381 0.00 0.00 0.00 4.30
4005 4226 1.674441 GGTAGCCCGTTTTATTGCCTC 59.326 52.381 0.00 0.00 0.00 4.70
4006 4227 1.683938 GGGTAGCCCGTTTTATTGCCT 60.684 52.381 0.00 0.00 32.13 4.75
4007 4228 0.742505 GGGTAGCCCGTTTTATTGCC 59.257 55.000 0.00 0.00 32.13 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.