Multiple sequence alignment - TraesCS4B01G174400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G174400 chr4B 100.000 4506 0 0 1 4506 382691000 382695505 0.000000e+00 8322.0
1 TraesCS4B01G174400 chr4B 75.410 183 35 9 104 280 653005529 653005351 3.740000e-11 80.5
2 TraesCS4B01G174400 chr4D 91.637 2236 91 25 1 2209 306794409 306796575 0.000000e+00 3005.0
3 TraesCS4B01G174400 chr4D 92.693 739 38 8 2930 3660 306797393 306798123 0.000000e+00 1051.0
4 TraesCS4B01G174400 chr4D 86.999 723 92 2 3784 4505 72262531 72263252 0.000000e+00 813.0
5 TraesCS4B01G174400 chr4D 86.963 721 90 3 3786 4505 64711467 64712184 0.000000e+00 808.0
6 TraesCS4B01G174400 chr4D 86.352 381 35 11 2216 2587 306796629 306797001 2.530000e-107 399.0
7 TraesCS4B01G174400 chr4A 90.779 1822 71 31 430 2209 170711540 170709774 0.000000e+00 2344.0
8 TraesCS4B01G174400 chr4A 93.064 865 39 10 2930 3784 170708988 170708135 0.000000e+00 1245.0
9 TraesCS4B01G174400 chr4A 91.584 404 26 3 1 404 170725753 170725358 6.590000e-153 551.0
10 TraesCS4B01G174400 chr4A 85.122 410 38 12 2211 2601 170709728 170709323 9.080000e-107 398.0
11 TraesCS4B01G174400 chr7A 94.337 724 39 2 3784 4506 202019304 202018582 0.000000e+00 1109.0
12 TraesCS4B01G174400 chr7A 87.781 712 84 2 3794 4505 433004876 433004168 0.000000e+00 830.0
13 TraesCS4B01G174400 chr6D 89.488 723 67 7 3784 4505 245926192 245925478 0.000000e+00 905.0
14 TraesCS4B01G174400 chr6A 87.967 723 84 3 3784 4505 39487806 39487086 0.000000e+00 850.0
15 TraesCS4B01G174400 chr6A 87.101 721 88 4 3786 4505 61522450 61521734 0.000000e+00 811.0
16 TraesCS4B01G174400 chr2D 87.240 721 88 4 3786 4505 629516361 629515644 0.000000e+00 819.0
17 TraesCS4B01G174400 chr2D 94.248 226 12 1 1080 1305 52227325 52227549 1.200000e-90 344.0
18 TraesCS4B01G174400 chr7B 86.915 726 91 4 3783 4506 24169906 24169183 0.000000e+00 811.0
19 TraesCS4B01G174400 chr2B 93.805 226 13 1 1080 1305 81755667 81755891 5.580000e-89 339.0
20 TraesCS4B01G174400 chr2A 93.805 226 13 1 1080 1305 53782735 53782959 5.580000e-89 339.0
21 TraesCS4B01G174400 chr3A 78.261 161 33 2 1098 1257 465225766 465225925 7.970000e-18 102.0
22 TraesCS4B01G174400 chr3D 76.744 172 40 0 1098 1269 339476213 339476042 3.710000e-16 97.1
23 TraesCS4B01G174400 chr3B 76.744 172 40 0 1098 1269 438381866 438381695 3.710000e-16 97.1
24 TraesCS4B01G174400 chr1D 76.829 164 30 8 1098 1257 470220201 470220360 8.030000e-13 86.1
25 TraesCS4B01G174400 chr5A 90.244 41 3 1 180 220 673733060 673733099 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G174400 chr4B 382691000 382695505 4505 False 8322 8322 100.000000 1 4506 1 chr4B.!!$F1 4505
1 TraesCS4B01G174400 chr4D 306794409 306798123 3714 False 1485 3005 90.227333 1 3660 3 chr4D.!!$F3 3659
2 TraesCS4B01G174400 chr4D 72262531 72263252 721 False 813 813 86.999000 3784 4505 1 chr4D.!!$F2 721
3 TraesCS4B01G174400 chr4D 64711467 64712184 717 False 808 808 86.963000 3786 4505 1 chr4D.!!$F1 719
4 TraesCS4B01G174400 chr4A 170708135 170711540 3405 True 1329 2344 89.655000 430 3784 3 chr4A.!!$R2 3354
5 TraesCS4B01G174400 chr7A 202018582 202019304 722 True 1109 1109 94.337000 3784 4506 1 chr7A.!!$R1 722
6 TraesCS4B01G174400 chr7A 433004168 433004876 708 True 830 830 87.781000 3794 4505 1 chr7A.!!$R2 711
7 TraesCS4B01G174400 chr6D 245925478 245926192 714 True 905 905 89.488000 3784 4505 1 chr6D.!!$R1 721
8 TraesCS4B01G174400 chr6A 39487086 39487806 720 True 850 850 87.967000 3784 4505 1 chr6A.!!$R1 721
9 TraesCS4B01G174400 chr6A 61521734 61522450 716 True 811 811 87.101000 3786 4505 1 chr6A.!!$R2 719
10 TraesCS4B01G174400 chr2D 629515644 629516361 717 True 819 819 87.240000 3786 4505 1 chr2D.!!$R1 719
11 TraesCS4B01G174400 chr7B 24169183 24169906 723 True 811 811 86.915000 3783 4506 1 chr7B.!!$R1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 1.547372 TCCTACGGGAGTTAAGTGTGC 59.453 52.381 0.0 0.0 43.33 4.57 F
1725 1783 0.811915 AGCAGTACTACTCGTGCCAG 59.188 55.000 0.0 0.0 36.54 4.85 F
1796 1854 1.247567 CGTGGTTGCTCCCTTCAATT 58.752 50.000 0.0 0.0 34.77 2.32 F
2653 2778 0.030773 CTAGATGCAAGCCGAGCGTA 59.969 55.000 0.0 0.0 33.85 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1783 0.034337 TCAACTCACCTGCCGGTAAC 59.966 55.0 1.90 0.00 43.24 2.50 R
2634 2759 0.030773 TACGCTCGGCTTGCATCTAG 59.969 55.0 0.00 0.00 0.00 2.43 R
2897 3116 0.110104 ATGCAGAGGCCAGGCTAATC 59.890 55.0 12.43 7.55 40.13 1.75 R
3694 3925 0.466922 TCCTAGCCAGGTACTACGCC 60.467 60.0 0.00 0.00 43.18 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 6.461110 TTAGAATCCTACGGGAGTTAAGTG 57.539 41.667 0.00 0.00 45.86 3.16
86 87 1.547372 TCCTACGGGAGTTAAGTGTGC 59.453 52.381 0.00 0.00 43.33 4.57
87 88 1.549170 CCTACGGGAGTTAAGTGTGCT 59.451 52.381 0.00 0.00 43.33 4.40
89 90 2.165319 ACGGGAGTTAAGTGTGCTTC 57.835 50.000 0.00 0.00 43.33 3.86
99 100 6.438763 AGTTAAGTGTGCTTCATTGCTTTAC 58.561 36.000 0.00 0.00 36.22 2.01
101 102 4.494350 AGTGTGCTTCATTGCTTTACAG 57.506 40.909 0.00 0.00 0.00 2.74
102 103 3.254166 AGTGTGCTTCATTGCTTTACAGG 59.746 43.478 0.00 0.00 0.00 4.00
107 108 5.175673 GTGCTTCATTGCTTTACAGGAAAAC 59.824 40.000 0.00 0.00 33.45 2.43
108 109 4.686091 GCTTCATTGCTTTACAGGAAAACC 59.314 41.667 0.00 0.00 33.45 3.27
109 110 5.738783 GCTTCATTGCTTTACAGGAAAACCA 60.739 40.000 0.00 0.00 33.45 3.67
110 111 5.860941 TCATTGCTTTACAGGAAAACCAA 57.139 34.783 0.00 0.00 33.45 3.67
111 112 6.227298 TCATTGCTTTACAGGAAAACCAAA 57.773 33.333 0.00 0.00 33.45 3.28
112 113 6.279882 TCATTGCTTTACAGGAAAACCAAAG 58.720 36.000 0.00 0.00 33.45 2.77
113 114 5.669164 TTGCTTTACAGGAAAACCAAAGT 57.331 34.783 0.00 0.00 0.00 2.66
114 115 5.004922 TGCTTTACAGGAAAACCAAAGTG 57.995 39.130 0.00 0.00 0.00 3.16
115 116 4.464597 TGCTTTACAGGAAAACCAAAGTGT 59.535 37.500 0.00 0.00 0.00 3.55
116 117 5.046950 TGCTTTACAGGAAAACCAAAGTGTT 60.047 36.000 0.00 0.00 0.00 3.32
117 118 5.872617 GCTTTACAGGAAAACCAAAGTGTTT 59.127 36.000 0.00 0.00 40.05 2.83
118 119 6.035650 GCTTTACAGGAAAACCAAAGTGTTTC 59.964 38.462 0.00 0.00 37.46 2.78
119 120 6.844097 TTACAGGAAAACCAAAGTGTTTCT 57.156 33.333 0.00 0.00 37.46 2.52
120 121 5.738619 ACAGGAAAACCAAAGTGTTTCTT 57.261 34.783 0.00 0.00 37.46 2.52
132 133 7.500892 ACCAAAGTGTTTCTTTTCCAAAAAGTT 59.499 29.630 10.91 0.00 42.95 2.66
149 150 7.442062 CCAAAAAGTTGTGGATGCTAGATTTTT 59.558 33.333 0.00 0.00 37.03 1.94
309 310 8.854979 TCAGTACAACATTTGATCAAAACTTG 57.145 30.769 23.91 24.85 33.56 3.16
353 354 6.266330 TGGTCACAACATGAATTTGGACAATA 59.734 34.615 0.00 0.00 39.72 1.90
354 355 7.151308 GGTCACAACATGAATTTGGACAATAA 58.849 34.615 0.00 0.00 39.72 1.40
485 486 8.156820 TGTTGGTAATATACAATCATCTCCCAG 58.843 37.037 0.00 0.00 0.00 4.45
489 490 9.877178 GGTAATATACAATCATCTCCCAGTAAG 57.123 37.037 0.00 0.00 0.00 2.34
538 539 6.552008 TGGTCTTCCAGATAAACCAAGAATT 58.448 36.000 0.00 0.00 39.03 2.17
594 608 4.165950 TCAGGCCCAACACTAATATGTCAT 59.834 41.667 0.00 0.00 30.55 3.06
602 635 9.787532 CCCAACACTAATATGTCATAAAAACAG 57.212 33.333 0.00 0.00 30.55 3.16
649 682 3.691049 AAATAATCATGTCGCGGTTGG 57.309 42.857 6.13 0.00 0.00 3.77
750 785 6.498651 AGGACATTCTTCCTCTTCTTCACTAA 59.501 38.462 0.00 0.00 42.98 2.24
751 786 6.592220 GGACATTCTTCCTCTTCTTCACTAAC 59.408 42.308 0.00 0.00 32.24 2.34
752 787 6.468543 ACATTCTTCCTCTTCTTCACTAACC 58.531 40.000 0.00 0.00 0.00 2.85
753 788 5.485209 TTCTTCCTCTTCTTCACTAACCC 57.515 43.478 0.00 0.00 0.00 4.11
754 789 3.510360 TCTTCCTCTTCTTCACTAACCCG 59.490 47.826 0.00 0.00 0.00 5.28
755 790 2.885616 TCCTCTTCTTCACTAACCCGT 58.114 47.619 0.00 0.00 0.00 5.28
756 791 4.038271 TCCTCTTCTTCACTAACCCGTA 57.962 45.455 0.00 0.00 0.00 4.02
757 792 4.410099 TCCTCTTCTTCACTAACCCGTAA 58.590 43.478 0.00 0.00 0.00 3.18
762 805 2.028748 TCTTCACTAACCCGTAACCAGC 60.029 50.000 0.00 0.00 0.00 4.85
812 855 6.540438 TCTATAAGTACAACCCCTCAACAG 57.460 41.667 0.00 0.00 0.00 3.16
876 919 2.861147 TTCCTCGTCACTCTCTCTCA 57.139 50.000 0.00 0.00 0.00 3.27
877 920 3.358111 TTCCTCGTCACTCTCTCTCAT 57.642 47.619 0.00 0.00 0.00 2.90
1426 1484 2.044053 CCATGGCAATCGGTGGGT 60.044 61.111 0.00 0.00 0.00 4.51
1725 1783 0.811915 AGCAGTACTACTCGTGCCAG 59.188 55.000 0.00 0.00 36.54 4.85
1728 1786 2.163010 GCAGTACTACTCGTGCCAGTTA 59.837 50.000 0.00 0.00 0.00 2.24
1746 1804 2.743718 CCGGCAGGTGAGTTGAGT 59.256 61.111 0.00 0.00 0.00 3.41
1769 1827 7.533426 AGTACTGTCGATCATTTTAGTTACGT 58.467 34.615 0.00 0.00 0.00 3.57
1770 1828 8.668353 AGTACTGTCGATCATTTTAGTTACGTA 58.332 33.333 0.00 0.00 0.00 3.57
1771 1829 7.966157 ACTGTCGATCATTTTAGTTACGTAG 57.034 36.000 0.00 0.00 0.00 3.51
1773 1831 8.668353 ACTGTCGATCATTTTAGTTACGTAGTA 58.332 33.333 0.00 0.00 45.11 1.82
1774 1832 9.156156 CTGTCGATCATTTTAGTTACGTAGTAG 57.844 37.037 0.00 0.00 46.93 2.57
1796 1854 1.247567 CGTGGTTGCTCCCTTCAATT 58.752 50.000 0.00 0.00 34.77 2.32
1833 1891 6.016527 GTGATCCATCTCATGCATGTAACAAT 60.017 38.462 25.43 13.28 0.00 2.71
1837 1895 5.508489 CCATCTCATGCATGTAACAATTCCC 60.508 44.000 25.43 0.00 0.00 3.97
1842 1900 3.772387 TGCATGTAACAATTCCCCTCAA 58.228 40.909 0.00 0.00 0.00 3.02
1854 1912 6.884836 ACAATTCCCCTCAACTCTACAAATAC 59.115 38.462 0.00 0.00 0.00 1.89
2055 2114 8.567285 AGACATACTTTATTTGGTCTTCCTTG 57.433 34.615 0.00 0.00 32.04 3.61
2056 2115 8.383175 AGACATACTTTATTTGGTCTTCCTTGA 58.617 33.333 0.00 0.00 32.04 3.02
2057 2116 8.567285 ACATACTTTATTTGGTCTTCCTTGAG 57.433 34.615 0.00 0.00 34.23 3.02
2058 2117 8.383175 ACATACTTTATTTGGTCTTCCTTGAGA 58.617 33.333 0.00 0.00 34.23 3.27
2059 2118 9.401058 CATACTTTATTTGGTCTTCCTTGAGAT 57.599 33.333 0.00 0.00 34.23 2.75
2067 2126 7.733773 TTGGTCTTCCTTGAGATATAGTTCA 57.266 36.000 0.00 0.00 34.23 3.18
2068 2127 7.353414 TGGTCTTCCTTGAGATATAGTTCAG 57.647 40.000 0.00 0.00 34.23 3.02
2069 2128 6.183360 TGGTCTTCCTTGAGATATAGTTCAGC 60.183 42.308 0.00 0.00 34.23 4.26
2120 2179 7.884257 AGTTCAGTTACAACTTCCTAGTCTAC 58.116 38.462 0.00 0.00 37.08 2.59
2124 2183 6.208994 CAGTTACAACTTCCTAGTCTACCTGT 59.791 42.308 0.00 0.00 37.08 4.00
2125 2184 6.208994 AGTTACAACTTCCTAGTCTACCTGTG 59.791 42.308 0.00 0.00 35.21 3.66
2126 2185 3.258622 ACAACTTCCTAGTCTACCTGTGC 59.741 47.826 0.00 0.00 31.99 4.57
2127 2186 3.170991 ACTTCCTAGTCTACCTGTGCA 57.829 47.619 0.00 0.00 0.00 4.57
2146 2205 5.934043 TGTGCATGCATAAGATCATAGTACC 59.066 40.000 25.64 5.23 0.00 3.34
2159 2218 8.948401 AGATCATAGTACCTGATACATCTGTT 57.052 34.615 8.17 0.00 36.09 3.16
2175 2234 1.625315 CTGTTGTCCTCTCCACCATGA 59.375 52.381 0.00 0.00 0.00 3.07
2197 2256 4.748892 ACATACGTCTGTTCTCAATCCTG 58.251 43.478 0.00 0.00 0.00 3.86
2199 2258 3.032017 ACGTCTGTTCTCAATCCTGTG 57.968 47.619 0.00 0.00 0.00 3.66
2204 2263 2.304180 CTGTTCTCAATCCTGTGGAGGT 59.696 50.000 0.00 0.00 40.76 3.85
2206 2265 3.244561 TGTTCTCAATCCTGTGGAGGTTC 60.245 47.826 0.00 0.00 40.76 3.62
2209 2316 3.198635 TCTCAATCCTGTGGAGGTTCATC 59.801 47.826 0.00 0.00 40.76 2.92
2213 2320 1.450312 CTGTGGAGGTTCATCGGGC 60.450 63.158 0.00 0.00 0.00 6.13
2220 2327 2.233676 GGAGGTTCATCGGGCAATTTTT 59.766 45.455 0.00 0.00 0.00 1.94
2227 2334 7.119116 AGGTTCATCGGGCAATTTTTAAATTTC 59.881 33.333 0.00 0.00 36.52 2.17
2228 2335 7.119116 GGTTCATCGGGCAATTTTTAAATTTCT 59.881 33.333 0.00 0.00 36.52 2.52
2236 2343 8.245491 GGGCAATTTTTAAATTTCTGCATTCAT 58.755 29.630 0.00 0.00 36.52 2.57
2256 2367 6.304356 TCATGCATCGTCATCTTTATTTCC 57.696 37.500 0.00 0.00 0.00 3.13
2278 2389 4.142026 CCCTGTGTCTCGTTTGTATATCCA 60.142 45.833 0.00 0.00 0.00 3.41
2368 2481 2.361757 TGATGCCCACTTTGTTGAACAG 59.638 45.455 0.00 0.00 0.00 3.16
2377 2494 6.262601 CCACTTTGTTGAACAGAACGTTTAT 58.737 36.000 0.46 0.00 38.19 1.40
2387 2504 7.792925 TGAACAGAACGTTTATAGTGAACATG 58.207 34.615 0.46 0.00 38.19 3.21
2388 2505 6.165659 ACAGAACGTTTATAGTGAACATGC 57.834 37.500 0.46 0.00 0.00 4.06
2389 2506 5.699001 ACAGAACGTTTATAGTGAACATGCA 59.301 36.000 0.46 0.00 0.00 3.96
2391 2508 6.684131 CAGAACGTTTATAGTGAACATGCATG 59.316 38.462 25.09 25.09 0.00 4.06
2392 2509 5.484173 ACGTTTATAGTGAACATGCATGG 57.516 39.130 29.41 12.50 0.00 3.66
2393 2510 4.335315 ACGTTTATAGTGAACATGCATGGG 59.665 41.667 29.41 7.08 0.00 4.00
2394 2511 4.335315 CGTTTATAGTGAACATGCATGGGT 59.665 41.667 29.41 17.46 0.00 4.51
2395 2512 5.163663 CGTTTATAGTGAACATGCATGGGTT 60.164 40.000 29.41 16.31 0.00 4.11
2396 2513 6.037720 CGTTTATAGTGAACATGCATGGGTTA 59.962 38.462 29.41 11.81 0.00 2.85
2397 2514 7.414651 CGTTTATAGTGAACATGCATGGGTTAA 60.415 37.037 29.41 13.84 0.00 2.01
2398 2515 7.946381 TTATAGTGAACATGCATGGGTTAAA 57.054 32.000 29.41 11.87 0.00 1.52
2399 2516 6.849085 ATAGTGAACATGCATGGGTTAAAA 57.151 33.333 29.41 10.43 0.00 1.52
2400 2517 4.881920 AGTGAACATGCATGGGTTAAAAC 58.118 39.130 29.41 16.49 0.00 2.43
2401 2518 4.588528 AGTGAACATGCATGGGTTAAAACT 59.411 37.500 29.41 18.18 0.00 2.66
2438 2555 2.352342 TGCATGCACATGTACTTGATCG 59.648 45.455 18.46 4.88 40.80 3.69
2450 2567 9.214957 ACATGTACTTGATCGTGATTTTTCTTA 57.785 29.630 15.13 0.00 0.00 2.10
2482 2604 7.557358 TCTCTTCACCGTAATACTACCATTACA 59.443 37.037 6.76 0.00 40.09 2.41
2486 2608 7.596494 TCACCGTAATACTACCATTACATAGC 58.404 38.462 6.76 0.00 40.09 2.97
2487 2609 7.449395 TCACCGTAATACTACCATTACATAGCT 59.551 37.037 0.00 0.00 40.09 3.32
2497 2619 9.643735 ACTACCATTACATAGCTTACTTCTAGT 57.356 33.333 0.00 0.00 0.00 2.57
2551 2673 3.250744 CCTCTTCATGTTTGCTTGCATG 58.749 45.455 0.00 8.09 42.62 4.06
2582 2704 4.818546 AGATATGCTAAAGTGTCCATGCAC 59.181 41.667 0.00 0.00 39.51 4.57
2587 2709 1.442769 AAAGTGTCCATGCACGCTAG 58.557 50.000 2.63 0.00 43.61 3.42
2598 2723 3.726291 TGCACGCTAGCAGATAATACA 57.274 42.857 16.45 0.00 40.11 2.29
2599 2724 3.381045 TGCACGCTAGCAGATAATACAC 58.619 45.455 16.45 0.00 40.11 2.90
2600 2725 3.068165 TGCACGCTAGCAGATAATACACT 59.932 43.478 16.45 0.00 40.11 3.55
2601 2726 4.277423 TGCACGCTAGCAGATAATACACTA 59.723 41.667 16.45 0.00 40.11 2.74
2602 2727 4.617645 GCACGCTAGCAGATAATACACTAC 59.382 45.833 16.45 0.00 0.00 2.73
2604 2729 5.853810 CACGCTAGCAGATAATACACTACAG 59.146 44.000 16.45 0.00 0.00 2.74
2605 2730 4.854291 CGCTAGCAGATAATACACTACAGC 59.146 45.833 16.45 0.00 0.00 4.40
2607 2732 6.216569 GCTAGCAGATAATACACTACAGCAA 58.783 40.000 10.63 0.00 0.00 3.91
2609 2734 7.224753 GCTAGCAGATAATACACTACAGCAAAA 59.775 37.037 10.63 0.00 0.00 2.44
2611 2736 7.106239 AGCAGATAATACACTACAGCAAAACT 58.894 34.615 0.00 0.00 0.00 2.66
2634 2759 7.681125 CTGTAAGTTACCGTGTATCTGAATC 57.319 40.000 10.51 0.00 0.00 2.52
2635 2760 7.400599 TGTAAGTTACCGTGTATCTGAATCT 57.599 36.000 10.51 0.00 0.00 2.40
2636 2761 8.510243 TGTAAGTTACCGTGTATCTGAATCTA 57.490 34.615 10.51 0.00 0.00 1.98
2637 2762 8.618677 TGTAAGTTACCGTGTATCTGAATCTAG 58.381 37.037 10.51 0.00 0.00 2.43
2638 2763 7.876936 AAGTTACCGTGTATCTGAATCTAGA 57.123 36.000 0.00 0.00 0.00 2.43
2639 2764 8.466617 AAGTTACCGTGTATCTGAATCTAGAT 57.533 34.615 0.00 0.00 40.39 1.98
2640 2765 7.877003 AGTTACCGTGTATCTGAATCTAGATG 58.123 38.462 5.86 0.00 37.91 2.90
2641 2766 5.127693 ACCGTGTATCTGAATCTAGATGC 57.872 43.478 5.86 4.59 39.38 3.91
2642 2767 4.584743 ACCGTGTATCTGAATCTAGATGCA 59.415 41.667 13.05 13.05 44.13 3.96
2643 2768 5.069119 ACCGTGTATCTGAATCTAGATGCAA 59.931 40.000 14.57 6.47 46.48 4.08
2644 2769 5.632764 CCGTGTATCTGAATCTAGATGCAAG 59.367 44.000 14.57 8.89 46.48 4.01
2645 2770 5.118357 CGTGTATCTGAATCTAGATGCAAGC 59.882 44.000 14.57 5.86 46.48 4.01
2648 2773 2.695147 TCTGAATCTAGATGCAAGCCGA 59.305 45.455 14.57 5.66 0.00 5.54
2649 2774 3.058450 CTGAATCTAGATGCAAGCCGAG 58.942 50.000 14.57 0.00 0.00 4.63
2650 2775 1.797635 GAATCTAGATGCAAGCCGAGC 59.202 52.381 5.86 0.00 0.00 5.03
2652 2777 1.227089 CTAGATGCAAGCCGAGCGT 60.227 57.895 0.00 0.00 33.85 5.07
2653 2778 0.030773 CTAGATGCAAGCCGAGCGTA 59.969 55.000 0.00 0.00 33.85 4.42
2654 2779 0.030773 TAGATGCAAGCCGAGCGTAG 59.969 55.000 0.00 0.00 33.85 3.51
2655 2780 1.226974 GATGCAAGCCGAGCGTAGA 60.227 57.895 0.00 0.00 33.85 2.59
2658 2783 0.806102 TGCAAGCCGAGCGTAGATTC 60.806 55.000 0.00 0.00 33.85 2.52
2661 2786 0.530744 AAGCCGAGCGTAGATTCACA 59.469 50.000 0.00 0.00 0.00 3.58
2664 2789 1.802880 GCCGAGCGTAGATTCACACAT 60.803 52.381 0.00 0.00 0.00 3.21
2665 2790 2.543031 GCCGAGCGTAGATTCACACATA 60.543 50.000 0.00 0.00 0.00 2.29
2669 2794 5.342525 CCGAGCGTAGATTCACACATAATAC 59.657 44.000 0.00 0.00 0.00 1.89
2670 2795 6.143496 CGAGCGTAGATTCACACATAATACT 58.857 40.000 0.00 0.00 0.00 2.12
2671 2796 6.303496 CGAGCGTAGATTCACACATAATACTC 59.697 42.308 0.00 0.00 0.00 2.59
2675 2800 5.537300 AGATTCACACATAATACTCGGCT 57.463 39.130 0.00 0.00 0.00 5.52
2676 2801 5.292765 AGATTCACACATAATACTCGGCTG 58.707 41.667 0.00 0.00 0.00 4.85
2677 2802 4.729227 TTCACACATAATACTCGGCTGA 57.271 40.909 0.00 0.00 0.00 4.26
2678 2803 4.937201 TCACACATAATACTCGGCTGAT 57.063 40.909 0.00 0.00 0.00 2.90
2679 2804 6.399639 TTCACACATAATACTCGGCTGATA 57.600 37.500 0.00 0.00 0.00 2.15
2680 2805 6.590234 TCACACATAATACTCGGCTGATAT 57.410 37.500 0.00 0.00 0.00 1.63
2682 2807 8.117813 TCACACATAATACTCGGCTGATATAA 57.882 34.615 0.00 0.00 0.00 0.98
2683 2808 8.244113 TCACACATAATACTCGGCTGATATAAG 58.756 37.037 0.00 0.00 0.00 1.73
2684 2809 7.009631 CACACATAATACTCGGCTGATATAAGC 59.990 40.741 3.08 3.08 42.75 3.09
2685 2810 7.035612 CACATAATACTCGGCTGATATAAGCA 58.964 38.462 14.29 0.00 45.43 3.91
2688 2813 9.920133 CATAATACTCGGCTGATATAAGCATAT 57.080 33.333 14.29 3.53 45.43 1.78
2691 2816 6.775594 ACTCGGCTGATATAAGCATATACA 57.224 37.500 14.29 0.00 45.43 2.29
2692 2817 6.565234 ACTCGGCTGATATAAGCATATACAC 58.435 40.000 14.29 0.00 45.43 2.90
2693 2818 5.902681 TCGGCTGATATAAGCATATACACC 58.097 41.667 14.29 0.00 45.43 4.16
2696 2821 5.980116 GGCTGATATAAGCATATACACCGAG 59.020 44.000 14.29 0.00 45.43 4.63
2697 2822 6.405953 GGCTGATATAAGCATATACACCGAGT 60.406 42.308 14.29 0.00 45.43 4.18
2698 2823 7.201794 GGCTGATATAAGCATATACACCGAGTA 60.202 40.741 14.29 0.00 45.43 2.59
2699 2824 8.353684 GCTGATATAAGCATATACACCGAGTAT 58.646 37.037 7.24 5.91 43.09 2.12
2707 2832 9.826574 AAGCATATACACCGAGTATTAAAAGAA 57.173 29.630 5.93 0.00 40.52 2.52
2708 2833 9.477484 AGCATATACACCGAGTATTAAAAGAAG 57.523 33.333 5.93 0.00 40.52 2.85
2709 2834 9.472361 GCATATACACCGAGTATTAAAAGAAGA 57.528 33.333 5.93 0.00 40.52 2.87
2714 2839 8.441312 ACACCGAGTATTAAAAGAAGAAAACA 57.559 30.769 0.00 0.00 0.00 2.83
2715 2840 8.340443 ACACCGAGTATTAAAAGAAGAAAACAC 58.660 33.333 0.00 0.00 0.00 3.32
2717 2842 7.013529 CCGAGTATTAAAAGAAGAAAACACGG 58.986 38.462 0.00 0.00 34.51 4.94
2718 2843 6.518736 CGAGTATTAAAAGAAGAAAACACGGC 59.481 38.462 0.00 0.00 0.00 5.68
2719 2844 7.266922 AGTATTAAAAGAAGAAAACACGGCA 57.733 32.000 0.00 0.00 0.00 5.69
2721 2846 6.822073 ATTAAAAGAAGAAAACACGGCAAC 57.178 33.333 0.00 0.00 0.00 4.17
2734 2859 3.676091 GGCAACGAAATTGACCTCG 57.324 52.632 0.00 0.00 40.96 4.63
2735 2860 0.168128 GGCAACGAAATTGACCTCGG 59.832 55.000 2.63 0.00 40.96 4.63
2736 2861 0.454452 GCAACGAAATTGACCTCGGC 60.454 55.000 2.63 0.00 41.23 5.54
2738 2863 1.535462 CAACGAAATTGACCTCGGCTT 59.465 47.619 2.63 0.00 41.23 4.35
2739 2864 1.156736 ACGAAATTGACCTCGGCTTG 58.843 50.000 2.63 0.00 39.38 4.01
2740 2865 1.156736 CGAAATTGACCTCGGCTTGT 58.843 50.000 0.00 0.00 0.00 3.16
2741 2866 2.289195 ACGAAATTGACCTCGGCTTGTA 60.289 45.455 2.63 0.00 39.38 2.41
2742 2867 2.936498 CGAAATTGACCTCGGCTTGTAT 59.064 45.455 0.00 0.00 0.00 2.29
2744 2869 3.627395 AATTGACCTCGGCTTGTATGA 57.373 42.857 0.00 0.00 0.00 2.15
2745 2870 2.380084 TTGACCTCGGCTTGTATGAC 57.620 50.000 0.00 0.00 0.00 3.06
2746 2871 0.535335 TGACCTCGGCTTGTATGACC 59.465 55.000 0.00 0.00 0.00 4.02
2748 2873 1.255667 ACCTCGGCTTGTATGACCGT 61.256 55.000 0.00 0.00 46.92 4.83
2749 2874 0.742505 CCTCGGCTTGTATGACCGTA 59.257 55.000 0.00 0.00 46.92 4.02
2750 2875 1.135527 CCTCGGCTTGTATGACCGTAA 59.864 52.381 0.00 0.00 46.92 3.18
2751 2876 2.460918 CTCGGCTTGTATGACCGTAAG 58.539 52.381 0.00 0.00 46.92 2.34
2752 2877 0.928229 CGGCTTGTATGACCGTAAGC 59.072 55.000 0.00 0.00 43.51 3.09
2754 2879 1.296727 GCTTGTATGACCGTAAGCCC 58.703 55.000 0.00 0.00 39.57 5.19
2755 2880 1.406341 GCTTGTATGACCGTAAGCCCA 60.406 52.381 0.00 0.00 39.57 5.36
2756 2881 2.550978 CTTGTATGACCGTAAGCCCAG 58.449 52.381 0.00 0.00 0.00 4.45
2757 2882 0.177141 TGTATGACCGTAAGCCCAGC 59.823 55.000 0.00 0.00 0.00 4.85
2758 2883 0.874607 GTATGACCGTAAGCCCAGCG 60.875 60.000 0.00 0.00 0.00 5.18
2760 2885 2.813908 GACCGTAAGCCCAGCGTG 60.814 66.667 0.00 0.00 0.00 5.34
2761 2886 3.291101 GACCGTAAGCCCAGCGTGA 62.291 63.158 0.00 0.00 0.00 4.35
2762 2887 2.813908 CCGTAAGCCCAGCGTGAC 60.814 66.667 0.00 0.00 0.00 3.67
2763 2888 2.048597 CGTAAGCCCAGCGTGACA 60.049 61.111 0.00 0.00 0.00 3.58
2764 2889 1.666553 CGTAAGCCCAGCGTGACAA 60.667 57.895 0.00 0.00 0.00 3.18
2766 2891 0.948678 GTAAGCCCAGCGTGACAAAA 59.051 50.000 0.00 0.00 0.00 2.44
2767 2892 1.335496 GTAAGCCCAGCGTGACAAAAA 59.665 47.619 0.00 0.00 0.00 1.94
2802 2927 7.398834 CTTATAAGCATATGCCACAAAAAGC 57.601 36.000 23.96 0.00 43.38 3.51
2803 2928 2.282701 AGCATATGCCACAAAAAGCG 57.717 45.000 23.96 0.00 43.38 4.68
2804 2929 0.646895 GCATATGCCACAAAAAGCGC 59.353 50.000 17.26 0.00 34.31 5.92
2805 2930 1.993542 CATATGCCACAAAAAGCGCA 58.006 45.000 11.47 0.00 35.35 6.09
2806 2931 1.655099 CATATGCCACAAAAAGCGCAC 59.345 47.619 11.47 0.00 33.31 5.34
2807 2932 0.386605 TATGCCACAAAAAGCGCACG 60.387 50.000 11.47 0.00 33.31 5.34
2826 3045 4.083802 GCACGGCTTACATATCCTTTCATC 60.084 45.833 0.00 0.00 0.00 2.92
2827 3046 4.150627 CACGGCTTACATATCCTTTCATCG 59.849 45.833 0.00 0.00 0.00 3.84
2836 3055 9.613428 TTACATATCCTTTCATCGTTTTCTCAT 57.387 29.630 0.00 0.00 0.00 2.90
2838 3057 9.046296 ACATATCCTTTCATCGTTTTCTCATAC 57.954 33.333 0.00 0.00 0.00 2.39
2839 3058 9.265901 CATATCCTTTCATCGTTTTCTCATACT 57.734 33.333 0.00 0.00 0.00 2.12
2840 3059 7.778470 ATCCTTTCATCGTTTTCTCATACTC 57.222 36.000 0.00 0.00 0.00 2.59
2841 3060 6.936279 TCCTTTCATCGTTTTCTCATACTCT 58.064 36.000 0.00 0.00 0.00 3.24
2842 3061 7.036220 TCCTTTCATCGTTTTCTCATACTCTC 58.964 38.462 0.00 0.00 0.00 3.20
2844 3063 7.493971 CCTTTCATCGTTTTCTCATACTCTCAT 59.506 37.037 0.00 0.00 0.00 2.90
2845 3064 8.777865 TTTCATCGTTTTCTCATACTCTCATT 57.222 30.769 0.00 0.00 0.00 2.57
2846 3065 8.777865 TTCATCGTTTTCTCATACTCTCATTT 57.222 30.769 0.00 0.00 0.00 2.32
2847 3066 8.777865 TCATCGTTTTCTCATACTCTCATTTT 57.222 30.769 0.00 0.00 0.00 1.82
2868 3087 5.862678 TTTTTGTTTCGGAAAGGAGGATT 57.137 34.783 2.85 0.00 0.00 3.01
2869 3088 5.862678 TTTTGTTTCGGAAAGGAGGATTT 57.137 34.783 2.85 0.00 0.00 2.17
2871 3090 5.862678 TTGTTTCGGAAAGGAGGATTTTT 57.137 34.783 2.85 0.00 0.00 1.94
2892 3111 3.454371 TTTTTGCGGGAAATTCGGAAA 57.546 38.095 0.00 1.46 43.84 3.13
2893 3112 2.715737 TTTGCGGGAAATTCGGAAAG 57.284 45.000 0.00 0.00 41.52 2.62
2894 3113 0.885196 TTGCGGGAAATTCGGAAAGG 59.115 50.000 0.00 0.00 35.21 3.11
2895 3114 0.037017 TGCGGGAAATTCGGAAAGGA 59.963 50.000 0.00 0.00 0.00 3.36
2896 3115 0.733150 GCGGGAAATTCGGAAAGGAG 59.267 55.000 0.00 0.00 0.00 3.69
2897 3116 1.379527 CGGGAAATTCGGAAAGGAGG 58.620 55.000 0.00 0.00 0.00 4.30
2898 3117 1.065709 CGGGAAATTCGGAAAGGAGGA 60.066 52.381 0.00 0.00 0.00 3.71
2899 3118 2.421529 CGGGAAATTCGGAAAGGAGGAT 60.422 50.000 0.00 0.00 0.00 3.24
2900 3119 3.632333 GGGAAATTCGGAAAGGAGGATT 58.368 45.455 0.00 0.00 0.00 3.01
2901 3120 4.685030 CGGGAAATTCGGAAAGGAGGATTA 60.685 45.833 0.00 0.00 0.00 1.75
2902 3121 4.822350 GGGAAATTCGGAAAGGAGGATTAG 59.178 45.833 0.00 0.00 0.00 1.73
2903 3122 4.276183 GGAAATTCGGAAAGGAGGATTAGC 59.724 45.833 0.00 0.00 0.00 3.09
2904 3123 3.493767 ATTCGGAAAGGAGGATTAGCC 57.506 47.619 0.00 0.00 0.00 3.93
2914 3133 1.228094 GGATTAGCCTGGCCTCTGC 60.228 63.158 16.57 3.65 0.00 4.26
2915 3134 1.528824 GATTAGCCTGGCCTCTGCA 59.471 57.895 16.57 0.00 40.13 4.41
2916 3135 0.110104 GATTAGCCTGGCCTCTGCAT 59.890 55.000 16.57 0.00 40.13 3.96
2917 3136 0.554792 ATTAGCCTGGCCTCTGCATT 59.445 50.000 16.57 0.00 40.13 3.56
2918 3137 1.212375 TTAGCCTGGCCTCTGCATTA 58.788 50.000 16.57 0.00 40.13 1.90
2919 3138 0.761187 TAGCCTGGCCTCTGCATTAG 59.239 55.000 16.57 0.00 40.13 1.73
2920 3139 1.527844 GCCTGGCCTCTGCATTAGG 60.528 63.158 7.66 10.27 40.13 2.69
2921 3140 1.987807 GCCTGGCCTCTGCATTAGGA 61.988 60.000 17.30 0.00 40.13 2.94
2922 3141 0.179034 CCTGGCCTCTGCATTAGGAC 60.179 60.000 17.30 15.27 43.12 3.85
2923 3142 0.531532 CTGGCCTCTGCATTAGGACG 60.532 60.000 17.30 8.45 46.10 4.79
2924 3143 0.975556 TGGCCTCTGCATTAGGACGA 60.976 55.000 17.30 4.73 46.10 4.20
2925 3144 0.394565 GGCCTCTGCATTAGGACGAT 59.605 55.000 17.30 0.00 40.13 3.73
2926 3145 1.506493 GCCTCTGCATTAGGACGATG 58.494 55.000 17.30 0.00 36.08 3.84
2961 3180 7.031975 GCTCTCATGACATAACGATATCATCA 58.968 38.462 3.12 0.00 29.25 3.07
2966 3185 9.709495 TCATGACATAACGATATCATCAAATCA 57.291 29.630 3.12 0.31 29.25 2.57
2967 3186 9.750882 CATGACATAACGATATCATCAAATCAC 57.249 33.333 3.12 0.00 29.25 3.06
2968 3187 8.885494 TGACATAACGATATCATCAAATCACA 57.115 30.769 3.12 0.00 0.00 3.58
2969 3188 9.492973 TGACATAACGATATCATCAAATCACAT 57.507 29.630 3.12 0.00 0.00 3.21
2979 3198 6.942532 TCATCAAATCACATAAACTAGGCC 57.057 37.500 0.00 0.00 0.00 5.19
2983 3202 9.725019 CATCAAATCACATAAACTAGGCCTATA 57.275 33.333 14.30 3.17 0.00 1.31
2986 3205 8.507249 CAAATCACATAAACTAGGCCTATAAGC 58.493 37.037 14.30 0.00 0.00 3.09
3033 3254 3.004862 CCCAACCATGAGTAAACGGTAC 58.995 50.000 0.00 0.00 0.00 3.34
3184 3410 1.913778 TTGACTGGCTGATTGCATGT 58.086 45.000 0.00 0.00 45.15 3.21
3343 3569 3.579534 ATGGCATTCTGATTCAGAGCT 57.420 42.857 20.79 10.17 41.75 4.09
3425 3651 8.339344 TCTTCTTCATGAAATTAGCATGTCAA 57.661 30.769 9.88 7.61 42.77 3.18
3426 3652 8.963725 TCTTCTTCATGAAATTAGCATGTCAAT 58.036 29.630 9.88 0.00 42.77 2.57
3512 3740 3.811083 TCGAGGCAAACTTAAAAGTCCA 58.189 40.909 0.00 0.00 38.57 4.02
3632 3863 5.838531 TGATCTGTTGCATGCAAATCATA 57.161 34.783 33.42 20.39 37.70 2.15
3667 3898 4.942852 AGCAAGCTAGCTACATAGTCAAG 58.057 43.478 19.70 0.00 44.50 3.02
3678 3909 0.919710 ATAGTCAAGGTTGGAGGGCC 59.080 55.000 0.00 0.00 0.00 5.80
3694 3925 0.533531 GGCCTAATAAACCCGGACGG 60.534 60.000 0.73 3.25 37.81 4.79
3731 3963 9.303116 TGGCTAGGACAATCAAGTAATTAAAAA 57.697 29.630 0.00 0.00 0.00 1.94
3777 4009 1.636148 ATTGCACCATCAGCCAAGTT 58.364 45.000 0.00 0.00 0.00 2.66
4019 4251 4.450122 GCTCGTCGCGTCGGTACA 62.450 66.667 24.30 5.35 0.00 2.90
4074 4306 4.192317 GACGTCCATCTAAGAAGGCAAAT 58.808 43.478 3.51 0.00 0.00 2.32
4182 4414 4.771114 TCCGATTGTGTTAGGGATCATT 57.229 40.909 0.00 0.00 0.00 2.57
4199 4431 3.565307 TCATTCTTTGGACTTTGTGGCT 58.435 40.909 0.00 0.00 0.00 4.75
4293 4525 8.206126 TGAATGGCATATTCTATCACCTTCTA 57.794 34.615 0.00 0.00 0.00 2.10
4327 4559 8.243752 TGGGGGTATTCTATTAGGTATACACTT 58.756 37.037 5.01 0.00 29.73 3.16
4350 4582 7.655328 ACTTCACATACTTGAAACTTCTCTCTG 59.345 37.037 0.00 0.00 35.07 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.929260 TCTAATTGGCATGACATTCTAATCAT 57.071 30.769 0.00 0.00 35.93 2.45
40 41 8.750515 TTCTAATTGGCATGACATTCTAATCA 57.249 30.769 0.00 0.00 0.00 2.57
45 46 6.371278 AGGATTCTAATTGGCATGACATTCT 58.629 36.000 0.00 0.00 0.00 2.40
50 51 5.597813 CGTAGGATTCTAATTGGCATGAC 57.402 43.478 0.00 0.00 0.00 3.06
83 84 4.503741 TTCCTGTAAAGCAATGAAGCAC 57.496 40.909 0.00 0.00 36.85 4.40
86 87 5.841810 TGGTTTTCCTGTAAAGCAATGAAG 58.158 37.500 0.00 0.00 41.12 3.02
87 88 5.860941 TGGTTTTCCTGTAAAGCAATGAA 57.139 34.783 0.00 0.00 41.12 2.57
99 100 6.092122 GGAAAAGAAACACTTTGGTTTTCCTG 59.908 38.462 14.36 0.00 46.55 3.86
101 102 5.935206 TGGAAAAGAAACACTTTGGTTTTCC 59.065 36.000 14.64 14.64 46.55 3.13
102 103 7.428282 TTGGAAAAGAAACACTTTGGTTTTC 57.572 32.000 0.00 0.00 46.55 2.29
107 108 7.433708 ACTTTTTGGAAAAGAAACACTTTGG 57.566 32.000 17.31 0.00 46.55 3.28
108 109 8.341903 ACAACTTTTTGGAAAAGAAACACTTTG 58.658 29.630 17.31 11.99 41.09 2.77
109 110 8.341903 CACAACTTTTTGGAAAAGAAACACTTT 58.658 29.630 17.31 0.00 42.38 2.66
110 111 7.041440 CCACAACTTTTTGGAAAAGAAACACTT 60.041 33.333 17.31 0.91 37.46 3.16
111 112 6.426633 CCACAACTTTTTGGAAAAGAAACACT 59.573 34.615 17.31 0.00 37.00 3.55
112 113 6.425417 TCCACAACTTTTTGGAAAAGAAACAC 59.575 34.615 17.31 0.00 39.04 3.32
113 114 6.525629 TCCACAACTTTTTGGAAAAGAAACA 58.474 32.000 17.31 0.00 39.04 2.83
114 115 7.463544 CATCCACAACTTTTTGGAAAAGAAAC 58.536 34.615 17.31 0.00 45.14 2.78
115 116 6.093357 GCATCCACAACTTTTTGGAAAAGAAA 59.907 34.615 17.31 0.60 45.14 2.52
116 117 5.584251 GCATCCACAACTTTTTGGAAAAGAA 59.416 36.000 17.31 0.33 45.14 2.52
117 118 5.104982 AGCATCCACAACTTTTTGGAAAAGA 60.105 36.000 17.31 0.00 45.14 2.52
118 119 5.118286 AGCATCCACAACTTTTTGGAAAAG 58.882 37.500 10.67 10.67 45.14 2.27
119 120 5.096443 AGCATCCACAACTTTTTGGAAAA 57.904 34.783 1.03 0.00 45.14 2.29
120 121 4.751767 AGCATCCACAACTTTTTGGAAA 57.248 36.364 1.03 0.00 45.14 3.13
186 187 9.875691 TTGATTCGTATGATTGAATCCTATAGG 57.124 33.333 13.07 13.07 46.29 2.57
309 310 6.092259 GTGACCAACACTTGTCCTATAACATC 59.908 42.308 0.00 0.00 45.13 3.06
485 486 7.208080 TCAGAAACCACTACTCAACTTCTTAC 58.792 38.462 0.00 0.00 0.00 2.34
489 490 6.920569 TTTCAGAAACCACTACTCAACTTC 57.079 37.500 0.00 0.00 0.00 3.01
538 539 7.733773 TCTGTGAGGGATTCTAATCTTTACA 57.266 36.000 2.91 4.66 35.73 2.41
594 608 7.261829 ACGTACAGCCAAATTACTGTTTTTA 57.738 32.000 12.33 0.00 44.59 1.52
602 635 3.930848 ACTGCTACGTACAGCCAAATTAC 59.069 43.478 18.85 0.00 41.04 1.89
640 673 2.030862 GTACAACCCCAACCGCGA 59.969 61.111 8.23 0.00 0.00 5.87
649 682 3.200483 ACAACGAGTCTTTGTACAACCC 58.800 45.455 12.93 0.00 35.38 4.11
750 785 4.029809 GGCTGGCTGGTTACGGGT 62.030 66.667 0.00 0.00 0.00 5.28
751 786 3.976701 CTGGCTGGCTGGTTACGGG 62.977 68.421 2.00 0.00 0.00 5.28
752 787 2.436646 CTGGCTGGCTGGTTACGG 60.437 66.667 2.00 0.00 0.00 4.02
753 788 3.127533 GCTGGCTGGCTGGTTACG 61.128 66.667 9.98 0.00 0.00 3.18
754 789 2.751837 GGCTGGCTGGCTGGTTAC 60.752 66.667 10.74 0.00 38.32 2.50
755 790 3.256178 TGGCTGGCTGGCTGGTTA 61.256 61.111 18.27 0.00 42.34 2.85
756 791 4.673375 CTGGCTGGCTGGCTGGTT 62.673 66.667 18.27 0.00 42.34 3.67
784 827 6.930475 TGAGGGGTTGTACTTATAGATAGGT 58.070 40.000 0.00 0.00 0.00 3.08
812 855 0.326264 ACCTTGCACCCTCATGTCTC 59.674 55.000 0.00 0.00 0.00 3.36
876 919 1.622811 GCTTGGATCGATGGAGGAGAT 59.377 52.381 0.54 0.00 0.00 2.75
877 920 1.043816 GCTTGGATCGATGGAGGAGA 58.956 55.000 0.54 0.00 0.00 3.71
977 1029 5.445069 TGGATCAATCGAATTGTTGGGTAT 58.555 37.500 0.00 0.00 41.02 2.73
1426 1484 4.476410 CTCGTACTGGCTCGCGCA 62.476 66.667 8.75 0.00 38.10 6.09
1698 1756 0.969149 AGTAGTACTGCTGCTGCACA 59.031 50.000 14.93 2.55 45.31 4.57
1725 1783 0.034337 TCAACTCACCTGCCGGTAAC 59.966 55.000 1.90 0.00 43.24 2.50
1746 1804 8.668353 ACTACGTAACTAAAATGATCGACAGTA 58.332 33.333 0.00 0.00 0.00 2.74
1769 1827 2.094675 GGGAGCAACCACGTACTACTA 58.905 52.381 0.00 0.00 41.20 1.82
1770 1828 0.893447 GGGAGCAACCACGTACTACT 59.107 55.000 0.00 0.00 41.20 2.57
1771 1829 0.893447 AGGGAGCAACCACGTACTAC 59.107 55.000 0.00 0.00 41.20 2.73
1772 1830 1.547372 GAAGGGAGCAACCACGTACTA 59.453 52.381 0.00 0.00 41.20 1.82
1773 1831 0.320697 GAAGGGAGCAACCACGTACT 59.679 55.000 0.00 0.00 41.20 2.73
1774 1832 0.034337 TGAAGGGAGCAACCACGTAC 59.966 55.000 0.00 0.00 41.20 3.67
1778 1836 1.273327 CCAATTGAAGGGAGCAACCAC 59.727 52.381 7.12 0.00 41.20 4.16
1796 1854 2.967745 TGGATCACATGAACCAACCA 57.032 45.000 8.32 0.00 42.88 3.67
1833 1891 6.697641 AAGTATTTGTAGAGTTGAGGGGAA 57.302 37.500 0.00 0.00 0.00 3.97
1837 1895 9.219603 TCAATGAAAGTATTTGTAGAGTTGAGG 57.780 33.333 0.00 0.00 39.27 3.86
1887 1945 9.716531 CATATCCACTAGCAATTCTTTCTCATA 57.283 33.333 0.00 0.00 0.00 2.15
1891 1949 6.359804 TGCATATCCACTAGCAATTCTTTCT 58.640 36.000 0.00 0.00 33.48 2.52
1892 1950 6.624352 TGCATATCCACTAGCAATTCTTTC 57.376 37.500 0.00 0.00 33.48 2.62
1893 1951 6.774170 TCATGCATATCCACTAGCAATTCTTT 59.226 34.615 0.00 0.00 40.76 2.52
1894 1952 6.301486 TCATGCATATCCACTAGCAATTCTT 58.699 36.000 0.00 0.00 40.76 2.52
1902 1960 5.999600 TGGATGTTTCATGCATATCCACTAG 59.000 40.000 19.76 0.00 41.60 2.57
1905 1963 5.518848 TTGGATGTTTCATGCATATCCAC 57.481 39.130 22.30 8.58 44.96 4.02
2055 2114 9.810545 AAAGAACAAGTAGCTGAACTATATCTC 57.189 33.333 0.00 0.00 32.15 2.75
2060 2119 8.035984 GGACTAAAGAACAAGTAGCTGAACTAT 58.964 37.037 0.00 0.00 32.15 2.12
2061 2120 7.232941 AGGACTAAAGAACAAGTAGCTGAACTA 59.767 37.037 0.00 0.00 0.00 2.24
2062 2121 6.042208 AGGACTAAAGAACAAGTAGCTGAACT 59.958 38.462 0.00 0.00 0.00 3.01
2063 2122 6.224584 AGGACTAAAGAACAAGTAGCTGAAC 58.775 40.000 0.00 0.00 0.00 3.18
2064 2123 6.420913 AGGACTAAAGAACAAGTAGCTGAA 57.579 37.500 0.00 0.00 0.00 3.02
2065 2124 6.223852 CAAGGACTAAAGAACAAGTAGCTGA 58.776 40.000 0.00 0.00 0.00 4.26
2066 2125 5.409826 CCAAGGACTAAAGAACAAGTAGCTG 59.590 44.000 0.00 0.00 0.00 4.24
2067 2126 5.307196 TCCAAGGACTAAAGAACAAGTAGCT 59.693 40.000 0.00 0.00 0.00 3.32
2068 2127 5.548406 TCCAAGGACTAAAGAACAAGTAGC 58.452 41.667 0.00 0.00 0.00 3.58
2120 2179 5.001874 ACTATGATCTTATGCATGCACAGG 58.998 41.667 25.37 13.13 0.00 4.00
2124 2183 6.014327 TCAGGTACTATGATCTTATGCATGCA 60.014 38.462 25.04 25.04 36.02 3.96
2125 2184 6.401394 TCAGGTACTATGATCTTATGCATGC 58.599 40.000 11.82 11.82 36.02 4.06
2126 2185 9.526713 GTATCAGGTACTATGATCTTATGCATG 57.473 37.037 10.16 0.00 38.36 4.06
2127 2186 9.259832 TGTATCAGGTACTATGATCTTATGCAT 57.740 33.333 14.71 3.79 38.36 3.96
2146 2205 4.403752 TGGAGAGGACAACAGATGTATCAG 59.596 45.833 0.00 0.00 44.12 2.90
2159 2218 1.956869 ATGTCATGGTGGAGAGGACA 58.043 50.000 0.00 0.00 42.07 4.02
2175 2234 4.220821 ACAGGATTGAGAACAGACGTATGT 59.779 41.667 10.63 10.63 33.96 2.29
2197 2256 0.394352 ATTGCCCGATGAACCTCCAC 60.394 55.000 0.00 0.00 0.00 4.02
2199 2258 1.474330 AAATTGCCCGATGAACCTCC 58.526 50.000 0.00 0.00 0.00 4.30
2204 2263 7.360776 GCAGAAATTTAAAAATTGCCCGATGAA 60.361 33.333 1.61 0.00 38.53 2.57
2206 2265 6.128336 TGCAGAAATTTAAAAATTGCCCGATG 60.128 34.615 12.03 0.00 38.53 3.84
2209 2316 5.604010 TGCAGAAATTTAAAAATTGCCCG 57.396 34.783 12.03 0.00 38.53 6.13
2236 2343 4.576053 CAGGGAAATAAAGATGACGATGCA 59.424 41.667 0.00 0.00 0.00 3.96
2242 2349 5.292101 CGAGACACAGGGAAATAAAGATGAC 59.708 44.000 0.00 0.00 0.00 3.06
2247 2354 5.238650 ACAAACGAGACACAGGGAAATAAAG 59.761 40.000 0.00 0.00 0.00 1.85
2256 2367 4.804139 GTGGATATACAAACGAGACACAGG 59.196 45.833 0.00 0.00 0.00 4.00
2278 2389 4.085357 TGTGACACATGGAAGCTTAAGT 57.915 40.909 3.56 0.00 0.00 2.24
2368 2481 5.965334 CCATGCATGTTCACTATAAACGTTC 59.035 40.000 24.58 0.00 0.00 3.95
2377 2494 5.772672 AGTTTTAACCCATGCATGTTCACTA 59.227 36.000 24.58 6.54 0.00 2.74
2387 2504 4.551702 ATCCCAAAGTTTTAACCCATGC 57.448 40.909 0.00 0.00 0.00 4.06
2388 2505 5.937540 GGAAATCCCAAAGTTTTAACCCATG 59.062 40.000 0.00 0.00 34.14 3.66
2389 2506 5.849475 AGGAAATCCCAAAGTTTTAACCCAT 59.151 36.000 0.00 0.00 37.41 4.00
2391 2508 5.547465 CAGGAAATCCCAAAGTTTTAACCC 58.453 41.667 0.00 0.00 37.41 4.11
2392 2509 4.994852 GCAGGAAATCCCAAAGTTTTAACC 59.005 41.667 0.00 0.00 37.41 2.85
2393 2510 5.606505 TGCAGGAAATCCCAAAGTTTTAAC 58.393 37.500 0.00 0.00 37.41 2.01
2394 2511 5.878406 TGCAGGAAATCCCAAAGTTTTAA 57.122 34.783 0.00 0.00 37.41 1.52
2395 2512 5.792741 CATGCAGGAAATCCCAAAGTTTTA 58.207 37.500 0.00 0.00 37.41 1.52
2396 2513 4.644498 CATGCAGGAAATCCCAAAGTTTT 58.356 39.130 0.00 0.00 37.41 2.43
2397 2514 3.557686 GCATGCAGGAAATCCCAAAGTTT 60.558 43.478 14.21 0.00 37.41 2.66
2398 2515 2.027837 GCATGCAGGAAATCCCAAAGTT 60.028 45.455 14.21 0.00 37.41 2.66
2399 2516 1.551883 GCATGCAGGAAATCCCAAAGT 59.448 47.619 14.21 0.00 37.41 2.66
2400 2517 1.551430 TGCATGCAGGAAATCCCAAAG 59.449 47.619 18.46 0.00 37.41 2.77
2401 2518 1.642112 TGCATGCAGGAAATCCCAAA 58.358 45.000 18.46 0.00 37.41 3.28
2459 2576 9.622004 CTATGTAATGGTAGTATTACGGTGAAG 57.378 37.037 0.00 0.00 43.28 3.02
2460 2577 8.084073 GCTATGTAATGGTAGTATTACGGTGAA 58.916 37.037 0.00 0.00 43.28 3.18
2463 2580 7.771927 AGCTATGTAATGGTAGTATTACGGT 57.228 36.000 0.00 0.00 43.28 4.83
2464 2581 9.565213 GTAAGCTATGTAATGGTAGTATTACGG 57.435 37.037 0.00 0.00 43.28 4.02
2497 2619 6.146347 GCGCAATTACCATTCCTTGTTTTAAA 59.854 34.615 0.30 0.00 0.00 1.52
2551 2673 4.514441 ACACTTTAGCATATCTCTGCATGC 59.486 41.667 11.82 11.82 46.35 4.06
2566 2688 1.442769 AGCGTGCATGGACACTTTAG 58.557 50.000 18.05 0.73 38.45 1.85
2569 2691 1.021390 GCTAGCGTGCATGGACACTT 61.021 55.000 18.05 4.47 38.45 3.16
2582 2704 4.854291 GCTGTAGTGTATTATCTGCTAGCG 59.146 45.833 10.77 5.22 0.00 4.26
2587 2709 7.182761 CAGTTTTGCTGTAGTGTATTATCTGC 58.817 38.462 0.00 0.00 40.27 4.26
2604 2729 4.541085 ACACGGTAACTTACAGTTTTGC 57.459 40.909 2.32 0.00 39.51 3.68
2605 2730 7.383029 TCAGATACACGGTAACTTACAGTTTTG 59.617 37.037 2.32 0.00 39.51 2.44
2607 2732 6.985117 TCAGATACACGGTAACTTACAGTTT 58.015 36.000 2.32 0.07 39.51 2.66
2609 2734 6.579666 TTCAGATACACGGTAACTTACAGT 57.420 37.500 1.40 0.37 37.58 3.55
2611 2736 7.400599 AGATTCAGATACACGGTAACTTACA 57.599 36.000 1.40 0.00 0.00 2.41
2612 2737 8.834465 TCTAGATTCAGATACACGGTAACTTAC 58.166 37.037 0.00 0.00 0.00 2.34
2614 2739 7.876936 TCTAGATTCAGATACACGGTAACTT 57.123 36.000 0.00 0.00 0.00 2.66
2615 2740 7.522399 GCATCTAGATTCAGATACACGGTAACT 60.522 40.741 1.33 0.00 33.41 2.24
2616 2741 6.583050 GCATCTAGATTCAGATACACGGTAAC 59.417 42.308 1.33 0.00 33.41 2.50
2617 2742 6.264518 TGCATCTAGATTCAGATACACGGTAA 59.735 38.462 1.33 0.00 33.41 2.85
2619 2744 4.584743 TGCATCTAGATTCAGATACACGGT 59.415 41.667 1.33 0.00 33.41 4.83
2620 2745 5.126396 TGCATCTAGATTCAGATACACGG 57.874 43.478 1.33 0.00 33.41 4.94
2623 2748 5.545588 GGCTTGCATCTAGATTCAGATACA 58.454 41.667 1.33 0.00 33.41 2.29
2625 2750 4.524328 TCGGCTTGCATCTAGATTCAGATA 59.476 41.667 1.33 0.00 33.41 1.98
2627 2752 2.695147 TCGGCTTGCATCTAGATTCAGA 59.305 45.455 1.33 0.00 0.00 3.27
2628 2753 3.058450 CTCGGCTTGCATCTAGATTCAG 58.942 50.000 1.33 0.51 0.00 3.02
2629 2754 2.804572 GCTCGGCTTGCATCTAGATTCA 60.805 50.000 1.33 0.87 0.00 2.57
2630 2755 1.797635 GCTCGGCTTGCATCTAGATTC 59.202 52.381 1.33 0.00 0.00 2.52
2632 2757 0.319383 CGCTCGGCTTGCATCTAGAT 60.319 55.000 0.00 0.00 0.00 1.98
2633 2758 1.066422 CGCTCGGCTTGCATCTAGA 59.934 57.895 0.00 0.00 0.00 2.43
2634 2759 0.030773 TACGCTCGGCTTGCATCTAG 59.969 55.000 0.00 0.00 0.00 2.43
2635 2760 0.030773 CTACGCTCGGCTTGCATCTA 59.969 55.000 0.00 0.00 0.00 1.98
2636 2761 1.227089 CTACGCTCGGCTTGCATCT 60.227 57.895 0.00 0.00 0.00 2.90
2637 2762 0.598680 ATCTACGCTCGGCTTGCATC 60.599 55.000 0.00 0.00 0.00 3.91
2638 2763 0.179073 AATCTACGCTCGGCTTGCAT 60.179 50.000 0.00 0.00 0.00 3.96
2639 2764 0.806102 GAATCTACGCTCGGCTTGCA 60.806 55.000 0.00 0.00 0.00 4.08
2640 2765 0.806102 TGAATCTACGCTCGGCTTGC 60.806 55.000 0.00 0.00 0.00 4.01
2641 2766 0.924090 GTGAATCTACGCTCGGCTTG 59.076 55.000 0.00 0.00 0.00 4.01
2642 2767 0.530744 TGTGAATCTACGCTCGGCTT 59.469 50.000 0.00 0.00 0.00 4.35
2643 2768 0.179134 GTGTGAATCTACGCTCGGCT 60.179 55.000 0.00 0.00 0.00 5.52
2644 2769 0.457853 TGTGTGAATCTACGCTCGGC 60.458 55.000 0.00 0.00 32.46 5.54
2645 2770 2.209838 ATGTGTGAATCTACGCTCGG 57.790 50.000 0.00 0.00 32.46 4.63
2648 2773 6.143496 CGAGTATTATGTGTGAATCTACGCT 58.857 40.000 0.00 0.00 32.46 5.07
2649 2774 5.342525 CCGAGTATTATGTGTGAATCTACGC 59.657 44.000 0.00 0.00 0.00 4.42
2650 2775 5.342525 GCCGAGTATTATGTGTGAATCTACG 59.657 44.000 0.00 0.00 0.00 3.51
2652 2777 6.264518 TCAGCCGAGTATTATGTGTGAATCTA 59.735 38.462 0.00 0.00 0.00 1.98
2653 2778 5.069119 TCAGCCGAGTATTATGTGTGAATCT 59.931 40.000 0.00 0.00 0.00 2.40
2654 2779 5.289595 TCAGCCGAGTATTATGTGTGAATC 58.710 41.667 0.00 0.00 0.00 2.52
2655 2780 5.276461 TCAGCCGAGTATTATGTGTGAAT 57.724 39.130 0.00 0.00 0.00 2.57
2658 2783 7.009631 GCTTATATCAGCCGAGTATTATGTGTG 59.990 40.741 0.00 0.00 33.21 3.82
2661 2786 7.170393 TGCTTATATCAGCCGAGTATTATGT 57.830 36.000 6.44 0.00 39.25 2.29
2665 2790 8.914011 TGTATATGCTTATATCAGCCGAGTATT 58.086 33.333 6.44 0.00 39.25 1.89
2669 2794 5.980116 GGTGTATATGCTTATATCAGCCGAG 59.020 44.000 6.44 0.00 39.25 4.63
2670 2795 5.449999 CGGTGTATATGCTTATATCAGCCGA 60.450 44.000 18.22 0.00 39.25 5.54
2671 2796 4.740205 CGGTGTATATGCTTATATCAGCCG 59.260 45.833 6.44 15.15 39.25 5.52
2682 2807 9.477484 CTTCTTTTAATACTCGGTGTATATGCT 57.523 33.333 3.39 0.00 40.69 3.79
2683 2808 9.472361 TCTTCTTTTAATACTCGGTGTATATGC 57.528 33.333 3.39 0.00 40.69 3.14
2688 2813 9.545105 TGTTTTCTTCTTTTAATACTCGGTGTA 57.455 29.630 0.00 0.00 35.37 2.90
2690 2815 7.529519 CGTGTTTTCTTCTTTTAATACTCGGTG 59.470 37.037 0.00 0.00 0.00 4.94
2691 2816 7.307573 CCGTGTTTTCTTCTTTTAATACTCGGT 60.308 37.037 0.00 0.00 38.11 4.69
2692 2817 7.013529 CCGTGTTTTCTTCTTTTAATACTCGG 58.986 38.462 0.00 0.00 37.36 4.63
2693 2818 6.518736 GCCGTGTTTTCTTCTTTTAATACTCG 59.481 38.462 0.00 0.00 0.00 4.18
2696 2821 7.356962 CGTTGCCGTGTTTTCTTCTTTTAATAC 60.357 37.037 0.00 0.00 0.00 1.89
2697 2822 6.633634 CGTTGCCGTGTTTTCTTCTTTTAATA 59.366 34.615 0.00 0.00 0.00 0.98
2698 2823 5.457473 CGTTGCCGTGTTTTCTTCTTTTAAT 59.543 36.000 0.00 0.00 0.00 1.40
2699 2824 4.794246 CGTTGCCGTGTTTTCTTCTTTTAA 59.206 37.500 0.00 0.00 0.00 1.52
2701 2826 3.119779 TCGTTGCCGTGTTTTCTTCTTTT 60.120 39.130 0.00 0.00 35.01 2.27
2702 2827 2.420722 TCGTTGCCGTGTTTTCTTCTTT 59.579 40.909 0.00 0.00 35.01 2.52
2703 2828 2.011222 TCGTTGCCGTGTTTTCTTCTT 58.989 42.857 0.00 0.00 35.01 2.52
2704 2829 1.658994 TCGTTGCCGTGTTTTCTTCT 58.341 45.000 0.00 0.00 35.01 2.85
2705 2830 2.461897 TTCGTTGCCGTGTTTTCTTC 57.538 45.000 0.00 0.00 35.01 2.87
2706 2831 2.923605 TTTCGTTGCCGTGTTTTCTT 57.076 40.000 0.00 0.00 35.01 2.52
2707 2832 3.112580 CAATTTCGTTGCCGTGTTTTCT 58.887 40.909 0.00 0.00 35.01 2.52
2708 2833 3.061469 GTCAATTTCGTTGCCGTGTTTTC 60.061 43.478 0.00 0.00 37.74 2.29
2709 2834 2.855370 GTCAATTTCGTTGCCGTGTTTT 59.145 40.909 0.00 0.00 37.74 2.43
2711 2836 1.268845 GGTCAATTTCGTTGCCGTGTT 60.269 47.619 0.00 0.00 37.74 3.32
2712 2837 0.309612 GGTCAATTTCGTTGCCGTGT 59.690 50.000 0.00 0.00 37.74 4.49
2713 2838 0.591170 AGGTCAATTTCGTTGCCGTG 59.409 50.000 0.00 0.00 38.34 4.94
2714 2839 0.872388 GAGGTCAATTTCGTTGCCGT 59.128 50.000 0.00 0.00 38.34 5.68
2715 2840 0.179225 CGAGGTCAATTTCGTTGCCG 60.179 55.000 0.00 0.00 38.34 5.69
2717 2842 0.454452 GCCGAGGTCAATTTCGTTGC 60.454 55.000 0.00 0.00 37.74 4.17
2718 2843 1.156736 AGCCGAGGTCAATTTCGTTG 58.843 50.000 0.00 0.00 39.25 4.10
2719 2844 1.535462 CAAGCCGAGGTCAATTTCGTT 59.465 47.619 0.00 0.00 35.14 3.85
2721 2846 1.156736 ACAAGCCGAGGTCAATTTCG 58.843 50.000 0.00 0.00 36.62 3.46
2723 2848 3.689649 GTCATACAAGCCGAGGTCAATTT 59.310 43.478 0.00 0.00 0.00 1.82
2725 2850 2.420129 GGTCATACAAGCCGAGGTCAAT 60.420 50.000 0.00 0.00 0.00 2.57
2726 2851 1.066430 GGTCATACAAGCCGAGGTCAA 60.066 52.381 0.00 0.00 0.00 3.18
2727 2852 0.535335 GGTCATACAAGCCGAGGTCA 59.465 55.000 0.00 0.00 0.00 4.02
2728 2853 3.364277 GGTCATACAAGCCGAGGTC 57.636 57.895 0.00 0.00 0.00 3.85
2735 2860 1.296727 GGGCTTACGGTCATACAAGC 58.703 55.000 4.40 4.40 42.08 4.01
2736 2861 2.550978 CTGGGCTTACGGTCATACAAG 58.449 52.381 0.00 0.00 0.00 3.16
2738 2863 0.177141 GCTGGGCTTACGGTCATACA 59.823 55.000 0.00 0.00 0.00 2.29
2739 2864 0.874607 CGCTGGGCTTACGGTCATAC 60.875 60.000 0.00 0.00 0.00 2.39
2740 2865 1.324740 ACGCTGGGCTTACGGTCATA 61.325 55.000 0.00 0.00 0.00 2.15
2741 2866 2.186903 CGCTGGGCTTACGGTCAT 59.813 61.111 0.00 0.00 0.00 3.06
2742 2867 3.307906 ACGCTGGGCTTACGGTCA 61.308 61.111 0.00 0.00 0.00 4.02
2744 2869 3.307906 TCACGCTGGGCTTACGGT 61.308 61.111 0.00 0.00 0.00 4.83
2745 2870 2.813908 GTCACGCTGGGCTTACGG 60.814 66.667 0.00 0.00 0.00 4.02
2746 2871 1.225376 TTTGTCACGCTGGGCTTACG 61.225 55.000 0.00 0.00 0.00 3.18
2747 2872 0.948678 TTTTGTCACGCTGGGCTTAC 59.051 50.000 0.00 0.00 0.00 2.34
2748 2873 1.681538 TTTTTGTCACGCTGGGCTTA 58.318 45.000 0.00 0.00 0.00 3.09
2749 2874 2.499214 TTTTTGTCACGCTGGGCTT 58.501 47.368 0.00 0.00 0.00 4.35
2750 2875 4.251246 TTTTTGTCACGCTGGGCT 57.749 50.000 0.00 0.00 0.00 5.19
2778 2903 6.142798 CGCTTTTTGTGGCATATGCTTATAAG 59.857 38.462 26.12 20.03 41.70 1.73
2782 2907 3.768406 CGCTTTTTGTGGCATATGCTTA 58.232 40.909 26.12 13.58 41.70 3.09
2783 2908 2.609350 CGCTTTTTGTGGCATATGCTT 58.391 42.857 26.12 0.00 41.70 3.91
2784 2909 1.736696 GCGCTTTTTGTGGCATATGCT 60.737 47.619 26.12 0.00 41.70 3.79
2785 2910 0.646895 GCGCTTTTTGTGGCATATGC 59.353 50.000 19.79 19.79 41.14 3.14
2786 2911 1.655099 GTGCGCTTTTTGTGGCATATG 59.345 47.619 9.73 0.00 37.77 1.78
2788 2913 0.386605 CGTGCGCTTTTTGTGGCATA 60.387 50.000 9.73 0.00 37.77 3.14
2789 2914 1.661197 CGTGCGCTTTTTGTGGCAT 60.661 52.632 9.73 0.00 37.77 4.40
2790 2915 2.278466 CGTGCGCTTTTTGTGGCA 60.278 55.556 9.73 0.00 0.00 4.92
2791 2916 3.029735 CCGTGCGCTTTTTGTGGC 61.030 61.111 9.73 0.00 0.00 5.01
2792 2917 3.029735 GCCGTGCGCTTTTTGTGG 61.030 61.111 9.73 0.70 0.00 4.17
2802 2927 1.865865 AAGGATATGTAAGCCGTGCG 58.134 50.000 0.00 0.00 0.00 5.34
2803 2928 3.202906 TGAAAGGATATGTAAGCCGTGC 58.797 45.455 0.00 0.00 0.00 5.34
2804 2929 4.150627 CGATGAAAGGATATGTAAGCCGTG 59.849 45.833 0.00 0.00 0.00 4.94
2805 2930 4.202223 ACGATGAAAGGATATGTAAGCCGT 60.202 41.667 0.00 0.00 0.00 5.68
2806 2931 4.307432 ACGATGAAAGGATATGTAAGCCG 58.693 43.478 0.00 0.00 0.00 5.52
2807 2932 6.619801 AAACGATGAAAGGATATGTAAGCC 57.380 37.500 0.00 0.00 0.00 4.35
2810 2935 9.613428 ATGAGAAAACGATGAAAGGATATGTAA 57.387 29.630 0.00 0.00 0.00 2.41
2813 3031 9.265901 AGTATGAGAAAACGATGAAAGGATATG 57.734 33.333 0.00 0.00 0.00 1.78
2846 3065 5.862678 AATCCTCCTTTCCGAAACAAAAA 57.137 34.783 0.00 0.00 0.00 1.94
2847 3066 5.862678 AAATCCTCCTTTCCGAAACAAAA 57.137 34.783 0.00 0.00 0.00 2.44
2849 3068 5.862678 AAAAATCCTCCTTTCCGAAACAA 57.137 34.783 0.00 0.00 0.00 2.83
2872 3091 3.385577 CTTTCCGAATTTCCCGCAAAAA 58.614 40.909 0.00 0.00 0.00 1.94
2874 3093 1.271102 CCTTTCCGAATTTCCCGCAAA 59.729 47.619 0.00 0.00 0.00 3.68
2877 3096 0.733150 CTCCTTTCCGAATTTCCCGC 59.267 55.000 0.00 0.00 0.00 6.13
2878 3097 1.065709 TCCTCCTTTCCGAATTTCCCG 60.066 52.381 0.00 0.00 0.00 5.14
2879 3098 2.801077 TCCTCCTTTCCGAATTTCCC 57.199 50.000 0.00 0.00 0.00 3.97
2881 3100 4.276183 GGCTAATCCTCCTTTCCGAATTTC 59.724 45.833 0.00 0.00 0.00 2.17
2882 3101 4.079730 AGGCTAATCCTCCTTTCCGAATTT 60.080 41.667 0.00 0.00 43.20 1.82
2883 3102 3.459969 AGGCTAATCCTCCTTTCCGAATT 59.540 43.478 0.00 0.00 43.20 2.17
2884 3103 3.049344 AGGCTAATCCTCCTTTCCGAAT 58.951 45.455 0.00 0.00 43.20 3.34
2885 3104 2.170607 CAGGCTAATCCTCCTTTCCGAA 59.829 50.000 0.00 0.00 45.52 4.30
2886 3105 1.762957 CAGGCTAATCCTCCTTTCCGA 59.237 52.381 0.00 0.00 45.52 4.55
2887 3106 1.202698 CCAGGCTAATCCTCCTTTCCG 60.203 57.143 0.00 0.00 45.52 4.30
2888 3107 1.477740 GCCAGGCTAATCCTCCTTTCC 60.478 57.143 3.29 0.00 45.52 3.13
2889 3108 1.477740 GGCCAGGCTAATCCTCCTTTC 60.478 57.143 12.43 0.00 45.52 2.62
2890 3109 0.553333 GGCCAGGCTAATCCTCCTTT 59.447 55.000 12.43 0.00 45.52 3.11
2891 3110 0.327964 AGGCCAGGCTAATCCTCCTT 60.328 55.000 12.43 0.00 45.52 3.36
2892 3111 0.766288 GAGGCCAGGCTAATCCTCCT 60.766 60.000 12.43 0.00 45.52 3.69
2893 3112 0.766288 AGAGGCCAGGCTAATCCTCC 60.766 60.000 12.43 0.00 45.52 4.30
2894 3113 0.396060 CAGAGGCCAGGCTAATCCTC 59.604 60.000 12.43 16.57 45.52 3.71
2896 3115 1.228094 GCAGAGGCCAGGCTAATCC 60.228 63.158 12.43 0.00 0.00 3.01
2897 3116 0.110104 ATGCAGAGGCCAGGCTAATC 59.890 55.000 12.43 7.55 40.13 1.75
2898 3117 0.554792 AATGCAGAGGCCAGGCTAAT 59.445 50.000 12.43 0.00 40.13 1.73
2899 3118 1.141657 CTAATGCAGAGGCCAGGCTAA 59.858 52.381 12.43 0.00 40.13 3.09
2900 3119 0.761187 CTAATGCAGAGGCCAGGCTA 59.239 55.000 12.43 0.00 40.13 3.93
2901 3120 1.530771 CTAATGCAGAGGCCAGGCT 59.469 57.895 12.43 1.67 40.13 4.58
2902 3121 1.527844 CCTAATGCAGAGGCCAGGC 60.528 63.158 5.01 1.26 40.13 4.85
2903 3122 0.179034 GTCCTAATGCAGAGGCCAGG 60.179 60.000 5.01 0.00 40.13 4.45
2904 3123 0.531532 CGTCCTAATGCAGAGGCCAG 60.532 60.000 5.01 0.00 40.13 4.85
2905 3124 0.975556 TCGTCCTAATGCAGAGGCCA 60.976 55.000 5.01 0.00 40.13 5.36
2906 3125 0.394565 ATCGTCCTAATGCAGAGGCC 59.605 55.000 11.82 0.00 40.13 5.19
2907 3126 1.506493 CATCGTCCTAATGCAGAGGC 58.494 55.000 11.82 7.05 41.68 4.70
2908 3127 1.506493 GCATCGTCCTAATGCAGAGG 58.494 55.000 10.62 10.62 46.93 3.69
2914 3133 4.378149 GCATGAGAATGCATCGTCCTAATG 60.378 45.833 0.00 5.62 46.25 1.90
2915 3134 3.750130 GCATGAGAATGCATCGTCCTAAT 59.250 43.478 0.00 0.00 46.25 1.73
2916 3135 3.133691 GCATGAGAATGCATCGTCCTAA 58.866 45.455 0.00 0.00 46.25 2.69
2917 3136 2.759191 GCATGAGAATGCATCGTCCTA 58.241 47.619 0.00 0.00 46.25 2.94
2918 3137 1.590932 GCATGAGAATGCATCGTCCT 58.409 50.000 0.00 0.00 46.25 3.85
2961 3180 8.217799 TGCTTATAGGCCTAGTTTATGTGATTT 58.782 33.333 19.33 0.00 0.00 2.17
2966 3185 8.996651 AAATTGCTTATAGGCCTAGTTTATGT 57.003 30.769 19.33 1.50 0.00 2.29
2993 3212 5.354184 TGGGACCTCTCTATCATATGGAA 57.646 43.478 2.13 0.00 0.00 3.53
2994 3213 5.087323 GTTGGGACCTCTCTATCATATGGA 58.913 45.833 2.13 0.00 0.00 3.41
3033 3254 4.613622 CGGTATTATACGGTGGTTCGGTAG 60.614 50.000 2.32 0.00 35.80 3.18
3044 3265 6.872020 ACCAAATTCTGATCGGTATTATACGG 59.128 38.462 6.80 7.93 0.00 4.02
3045 3266 7.884816 ACCAAATTCTGATCGGTATTATACG 57.115 36.000 6.80 0.00 0.00 3.06
3108 3334 8.824781 AGAATTCAATAGATCATTTGACGACAG 58.175 33.333 8.44 0.00 31.87 3.51
3122 3348 8.772250 ACCCACTCAGAATAAGAATTCAATAGA 58.228 33.333 8.44 0.67 43.44 1.98
3125 3351 7.671398 ACAACCCACTCAGAATAAGAATTCAAT 59.329 33.333 8.44 0.00 43.44 2.57
3184 3410 2.190161 CGTGATCGTCGCTGGAATTAA 58.810 47.619 0.00 0.00 0.00 1.40
3343 3569 5.743636 AAATAGCTTTCTCCCATTTGCAA 57.256 34.783 0.00 0.00 0.00 4.08
3425 3651 8.776376 TGATCATATATGTGCATACGTGAAAT 57.224 30.769 12.42 0.00 0.00 2.17
3426 3652 8.776376 ATGATCATATATGTGCATACGTGAAA 57.224 30.769 6.36 5.43 0.00 2.69
3547 3778 2.609984 GCATCGATCTGATCCAGTGAGG 60.610 54.545 11.84 6.36 34.13 3.86
3632 3863 1.210478 AGCTTGCTTCACGGTGGATAT 59.790 47.619 8.50 0.00 0.00 1.63
3667 3898 2.662866 GGTTTATTAGGCCCTCCAACC 58.337 52.381 0.00 2.04 33.74 3.77
3694 3925 0.466922 TCCTAGCCAGGTACTACGCC 60.467 60.000 0.00 0.00 43.18 5.68
3695 3926 0.667453 GTCCTAGCCAGGTACTACGC 59.333 60.000 0.00 0.00 43.18 4.42
3696 3927 2.048444 TGTCCTAGCCAGGTACTACG 57.952 55.000 0.00 0.00 43.18 3.51
3754 3986 2.212812 TGGCTGATGGTGCAATACAA 57.787 45.000 0.00 0.00 0.00 2.41
3777 4009 3.254166 AGTCTACCGCTTTTTCACGTAGA 59.746 43.478 0.00 0.00 0.00 2.59
4019 4251 9.793259 TGTTTCCTGAATTAGACTTGTTCTTAT 57.207 29.630 0.00 0.00 35.55 1.73
4094 4326 7.949690 TCAAAACATTCCTCTCATGATGAAT 57.050 32.000 0.00 2.77 37.81 2.57
4118 4350 3.944087 GTCACCAAGACCTCTGCTATTT 58.056 45.455 0.00 0.00 41.56 1.40
4182 4414 5.241506 CAGAAATAGCCACAAAGTCCAAAGA 59.758 40.000 0.00 0.00 0.00 2.52
4199 4431 2.076100 CGCTTGCCACACTCAGAAATA 58.924 47.619 0.00 0.00 0.00 1.40
4293 4525 1.027815 AGAATACCCCCAGACCTCCT 58.972 55.000 0.00 0.00 0.00 3.69
4327 4559 5.928839 GCAGAGAGAAGTTTCAAGTATGTGA 59.071 40.000 0.00 0.00 0.00 3.58
4338 4570 3.594134 CCTTCGATGCAGAGAGAAGTTT 58.406 45.455 16.58 0.00 38.62 2.66
4350 4582 2.859165 TGATATTCCCCCTTCGATGC 57.141 50.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.