Multiple sequence alignment - TraesCS4B01G156800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G156800 chr4B 100.000 2384 0 0 1 2384 291848955 291846572 0.000000e+00 4403.0
1 TraesCS4B01G156800 chr4B 91.374 313 23 4 93 403 591254988 591255298 2.190000e-115 425.0
2 TraesCS4B01G156800 chr4B 79.392 592 91 20 1645 2214 99435059 99434477 2.870000e-104 388.0
3 TraesCS4B01G156800 chr4D 94.755 858 27 9 802 1642 293860985 293860129 0.000000e+00 1319.0
4 TraesCS4B01G156800 chr4D 91.385 325 25 3 106 427 60087213 60086889 2.170000e-120 442.0
5 TraesCS4B01G156800 chr4D 92.739 303 21 1 104 405 220005747 220005445 1.010000e-118 436.0
6 TraesCS4B01G156800 chr4D 92.333 300 21 2 106 404 490020303 490020005 2.190000e-115 425.0
7 TraesCS4B01G156800 chr4D 82.986 288 29 12 489 760 293861269 293860986 2.370000e-60 243.0
8 TraesCS4B01G156800 chr4D 95.890 73 3 0 33 105 293861335 293861263 4.160000e-23 119.0
9 TraesCS4B01G156800 chr4D 90.217 92 6 2 398 486 502633157 502633066 1.500000e-22 117.0
10 TraesCS4B01G156800 chr4A 92.436 780 36 7 794 1552 323789271 323788494 0.000000e+00 1092.0
11 TraesCS4B01G156800 chr4A 92.000 75 5 1 489 562 323849666 323849592 1.170000e-18 104.0
12 TraesCS4B01G156800 chr7D 89.034 383 22 11 106 486 201830246 201830610 7.770000e-125 457.0
13 TraesCS4B01G156800 chr7D 93.000 300 19 2 106 404 383337399 383337101 1.010000e-118 436.0
14 TraesCS4B01G156800 chr2D 92.484 306 20 3 98 401 42069844 42070148 3.640000e-118 435.0
15 TraesCS4B01G156800 chr2D 84.633 436 52 7 985 1419 650363157 650363578 1.020000e-113 420.0
16 TraesCS4B01G156800 chr2D 77.982 436 69 20 985 1419 650358423 650358832 5.090000e-62 248.0
17 TraesCS4B01G156800 chr2D 97.727 44 1 0 797 840 650358256 650358299 2.540000e-10 76.8
18 TraesCS4B01G156800 chrUn 92.905 296 17 3 110 404 99417591 99417299 6.090000e-116 427.0
19 TraesCS4B01G156800 chrUn 95.181 83 3 1 409 491 321602028 321602109 1.920000e-26 130.0
20 TraesCS4B01G156800 chr6D 91.613 310 23 3 97 404 334589632 334589324 2.190000e-115 425.0
21 TraesCS4B01G156800 chr1A 79.829 585 88 23 1645 2214 171022147 171022716 1.330000e-107 399.0
22 TraesCS4B01G156800 chr1A 96.154 78 3 0 409 486 570230338 570230415 6.920000e-26 128.0
23 TraesCS4B01G156800 chr2B 79.717 424 62 6 985 1396 786677870 786678281 3.880000e-73 285.0
24 TraesCS4B01G156800 chr2B 79.714 419 56 21 985 1402 786465676 786466066 2.330000e-70 276.0
25 TraesCS4B01G156800 chr2A 78.753 433 65 17 988 1419 774370246 774369840 5.050000e-67 265.0
26 TraesCS4B01G156800 chr2A 78.753 433 65 17 988 1419 774432147 774431741 5.050000e-67 265.0
27 TraesCS4B01G156800 chr3B 77.258 299 51 13 1645 1934 640536977 640536687 2.450000e-35 159.0
28 TraesCS4B01G156800 chr1B 96.154 78 3 0 409 486 277612061 277612138 6.920000e-26 128.0
29 TraesCS4B01G156800 chr1D 94.872 78 4 0 409 486 345413132 345413055 3.220000e-24 122.0
30 TraesCS4B01G156800 chr1D 92.857 84 6 0 409 492 388607115 388607032 3.220000e-24 122.0
31 TraesCS4B01G156800 chr1D 94.872 78 4 0 409 486 436279422 436279345 3.220000e-24 122.0
32 TraesCS4B01G156800 chr7B 90.909 88 6 2 409 495 272099889 272099803 1.500000e-22 117.0
33 TraesCS4B01G156800 chr5D 93.590 78 4 1 409 486 458902997 458903073 5.380000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G156800 chr4B 291846572 291848955 2383 True 4403.000000 4403 100.000000 1 2384 1 chr4B.!!$R2 2383
1 TraesCS4B01G156800 chr4B 99434477 99435059 582 True 388.000000 388 79.392000 1645 2214 1 chr4B.!!$R1 569
2 TraesCS4B01G156800 chr4D 293860129 293861335 1206 True 560.333333 1319 91.210333 33 1642 3 chr4D.!!$R5 1609
3 TraesCS4B01G156800 chr4A 323788494 323789271 777 True 1092.000000 1092 92.436000 794 1552 1 chr4A.!!$R1 758
4 TraesCS4B01G156800 chr1A 171022147 171022716 569 False 399.000000 399 79.829000 1645 2214 1 chr1A.!!$F1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.038251 CGAAAAGCCCTGAAAAGCCC 60.038 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 2001 0.035439 GATCCCTCCCGCAACTCAAA 60.035 55.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.488090 GGCGCTGCCGTTGTAGAC 61.488 66.667 7.64 0.00 39.62 2.59
50 51 2.730090 CGCTCTAAACGCGTAGAAAGGA 60.730 50.000 14.46 4.68 45.13 3.36
97 98 1.211457 AGATGTTGGTCTCCTGATGGC 59.789 52.381 0.00 0.00 0.00 4.40
98 99 0.257039 ATGTTGGTCTCCTGATGGCC 59.743 55.000 0.00 0.00 0.00 5.36
99 100 1.077429 GTTGGTCTCCTGATGGCCC 60.077 63.158 0.00 0.00 0.00 5.80
100 101 2.308722 TTGGTCTCCTGATGGCCCC 61.309 63.158 0.00 0.00 0.00 5.80
101 102 3.493303 GGTCTCCTGATGGCCCCC 61.493 72.222 0.00 0.00 0.00 5.40
115 116 3.637273 CCCCCGCTATACCTGGCC 61.637 72.222 0.00 0.00 0.00 5.36
116 117 2.847234 CCCCGCTATACCTGGCCA 60.847 66.667 4.71 4.71 0.00 5.36
117 118 2.224159 CCCCGCTATACCTGGCCAT 61.224 63.158 5.51 0.00 0.00 4.40
118 119 1.003355 CCCGCTATACCTGGCCATG 60.003 63.158 5.51 6.06 0.00 3.66
119 120 1.003355 CCGCTATACCTGGCCATGG 60.003 63.158 5.51 13.05 0.00 3.66
120 121 1.003355 CGCTATACCTGGCCATGGG 60.003 63.158 20.97 16.10 0.00 4.00
144 145 2.526628 TTGGGCCGGGCCTAAAAA 59.473 55.556 42.77 28.32 45.79 1.94
164 165 4.473643 CCCACGGCAGAAAACTGA 57.526 55.556 0.00 0.00 0.00 3.41
165 166 2.247790 CCCACGGCAGAAAACTGAG 58.752 57.895 0.00 0.00 0.00 3.35
166 167 1.237285 CCCACGGCAGAAAACTGAGG 61.237 60.000 0.00 0.00 0.00 3.86
167 168 1.576421 CACGGCAGAAAACTGAGGC 59.424 57.895 0.00 0.00 0.00 4.70
168 169 1.600916 ACGGCAGAAAACTGAGGCC 60.601 57.895 0.00 0.00 41.20 5.19
169 170 2.335712 CGGCAGAAAACTGAGGCCC 61.336 63.158 0.00 0.00 41.58 5.80
170 171 1.228552 GGCAGAAAACTGAGGCCCA 60.229 57.895 0.00 0.00 38.70 5.36
188 189 3.810188 GGCCCTCCCAAGCCCTAC 61.810 72.222 0.00 0.00 43.76 3.18
189 190 3.810188 GCCCTCCCAAGCCCTACC 61.810 72.222 0.00 0.00 0.00 3.18
190 191 2.286121 CCCTCCCAAGCCCTACCA 60.286 66.667 0.00 0.00 0.00 3.25
191 192 1.697754 CCCTCCCAAGCCCTACCAT 60.698 63.158 0.00 0.00 0.00 3.55
192 193 1.709994 CCCTCCCAAGCCCTACCATC 61.710 65.000 0.00 0.00 0.00 3.51
193 194 0.988145 CCTCCCAAGCCCTACCATCA 60.988 60.000 0.00 0.00 0.00 3.07
194 195 0.918983 CTCCCAAGCCCTACCATCAA 59.081 55.000 0.00 0.00 0.00 2.57
195 196 0.623723 TCCCAAGCCCTACCATCAAC 59.376 55.000 0.00 0.00 0.00 3.18
196 197 0.395724 CCCAAGCCCTACCATCAACC 60.396 60.000 0.00 0.00 0.00 3.77
197 198 0.625849 CCAAGCCCTACCATCAACCT 59.374 55.000 0.00 0.00 0.00 3.50
198 199 1.843851 CCAAGCCCTACCATCAACCTA 59.156 52.381 0.00 0.00 0.00 3.08
199 200 2.421529 CCAAGCCCTACCATCAACCTAC 60.422 54.545 0.00 0.00 0.00 3.18
200 201 2.505819 CAAGCCCTACCATCAACCTACT 59.494 50.000 0.00 0.00 0.00 2.57
201 202 2.846950 AGCCCTACCATCAACCTACTT 58.153 47.619 0.00 0.00 0.00 2.24
202 203 3.190439 AGCCCTACCATCAACCTACTTT 58.810 45.455 0.00 0.00 0.00 2.66
203 204 3.591977 AGCCCTACCATCAACCTACTTTT 59.408 43.478 0.00 0.00 0.00 2.27
204 205 3.945921 GCCCTACCATCAACCTACTTTTC 59.054 47.826 0.00 0.00 0.00 2.29
205 206 4.566907 GCCCTACCATCAACCTACTTTTCA 60.567 45.833 0.00 0.00 0.00 2.69
206 207 5.566469 CCCTACCATCAACCTACTTTTCAA 58.434 41.667 0.00 0.00 0.00 2.69
207 208 5.648092 CCCTACCATCAACCTACTTTTCAAG 59.352 44.000 0.00 0.00 0.00 3.02
208 209 5.123979 CCTACCATCAACCTACTTTTCAAGC 59.876 44.000 0.00 0.00 0.00 4.01
209 210 3.826729 ACCATCAACCTACTTTTCAAGCC 59.173 43.478 0.00 0.00 0.00 4.35
210 211 3.193479 CCATCAACCTACTTTTCAAGCCC 59.807 47.826 0.00 0.00 0.00 5.19
211 212 3.586470 TCAACCTACTTTTCAAGCCCA 57.414 42.857 0.00 0.00 0.00 5.36
212 213 3.904717 TCAACCTACTTTTCAAGCCCAA 58.095 40.909 0.00 0.00 0.00 4.12
213 214 3.888930 TCAACCTACTTTTCAAGCCCAAG 59.111 43.478 0.00 0.00 0.00 3.61
214 215 3.876309 ACCTACTTTTCAAGCCCAAGA 57.124 42.857 0.00 0.00 0.00 3.02
215 216 3.487372 ACCTACTTTTCAAGCCCAAGAC 58.513 45.455 0.00 0.00 0.00 3.01
216 217 2.820197 CCTACTTTTCAAGCCCAAGACC 59.180 50.000 0.00 0.00 0.00 3.85
217 218 1.318576 ACTTTTCAAGCCCAAGACCG 58.681 50.000 0.00 0.00 0.00 4.79
218 219 0.598065 CTTTTCAAGCCCAAGACCGG 59.402 55.000 0.00 0.00 0.00 5.28
225 226 3.411517 CCCAAGACCGGCCCATCT 61.412 66.667 0.00 0.00 0.00 2.90
226 227 2.124570 CCAAGACCGGCCCATCTG 60.125 66.667 0.00 0.17 0.00 2.90
245 246 2.814410 GCGAAAAGCCCTGAAAAGC 58.186 52.632 0.00 0.00 40.81 3.51
246 247 0.667487 GCGAAAAGCCCTGAAAAGCC 60.667 55.000 0.00 0.00 40.81 4.35
247 248 0.038251 CGAAAAGCCCTGAAAAGCCC 60.038 55.000 0.00 0.00 0.00 5.19
248 249 1.342074 GAAAAGCCCTGAAAAGCCCT 58.658 50.000 0.00 0.00 0.00 5.19
249 250 1.694150 GAAAAGCCCTGAAAAGCCCTT 59.306 47.619 0.00 0.00 0.00 3.95
250 251 1.342074 AAAGCCCTGAAAAGCCCTTC 58.658 50.000 0.00 0.00 0.00 3.46
251 252 0.895559 AAGCCCTGAAAAGCCCTTCG 60.896 55.000 0.00 0.00 0.00 3.79
252 253 2.343426 GCCCTGAAAAGCCCTTCGG 61.343 63.158 0.00 0.00 0.00 4.30
270 271 2.203209 GCTTAGGGCCATGGGTCG 60.203 66.667 15.13 0.00 34.27 4.79
271 272 2.510906 CTTAGGGCCATGGGTCGG 59.489 66.667 15.13 0.00 0.00 4.79
272 273 3.093835 TTAGGGCCATGGGTCGGG 61.094 66.667 15.13 0.00 0.00 5.14
278 279 3.411517 CCATGGGTCGGGCCTCTT 61.412 66.667 2.85 0.00 37.43 2.85
279 280 2.677228 CATGGGTCGGGCCTCTTT 59.323 61.111 0.84 0.00 37.43 2.52
280 281 1.452108 CATGGGTCGGGCCTCTTTC 60.452 63.158 0.84 0.00 37.43 2.62
281 282 1.616628 ATGGGTCGGGCCTCTTTCT 60.617 57.895 0.84 0.00 37.43 2.52
282 283 1.208165 ATGGGTCGGGCCTCTTTCTT 61.208 55.000 0.84 0.00 37.43 2.52
283 284 0.545787 TGGGTCGGGCCTCTTTCTTA 60.546 55.000 0.84 0.00 37.43 2.10
284 285 0.616891 GGGTCGGGCCTCTTTCTTAA 59.383 55.000 0.84 0.00 37.43 1.85
285 286 1.003928 GGGTCGGGCCTCTTTCTTAAA 59.996 52.381 0.84 0.00 37.43 1.52
286 287 2.553685 GGGTCGGGCCTCTTTCTTAAAA 60.554 50.000 0.84 0.00 37.43 1.52
287 288 3.353557 GGTCGGGCCTCTTTCTTAAAAT 58.646 45.455 0.84 0.00 0.00 1.82
288 289 3.128764 GGTCGGGCCTCTTTCTTAAAATG 59.871 47.826 0.84 0.00 0.00 2.32
289 290 2.752903 TCGGGCCTCTTTCTTAAAATGC 59.247 45.455 0.84 0.00 0.00 3.56
290 291 2.159240 CGGGCCTCTTTCTTAAAATGCC 60.159 50.000 0.84 0.00 34.85 4.40
291 292 2.831526 GGGCCTCTTTCTTAAAATGCCA 59.168 45.455 0.84 0.00 36.17 4.92
292 293 3.260632 GGGCCTCTTTCTTAAAATGCCAA 59.739 43.478 0.84 0.00 36.17 4.52
293 294 4.080919 GGGCCTCTTTCTTAAAATGCCAAT 60.081 41.667 0.84 0.00 36.17 3.16
294 295 5.128663 GGGCCTCTTTCTTAAAATGCCAATA 59.871 40.000 0.84 0.00 36.17 1.90
295 296 6.183361 GGGCCTCTTTCTTAAAATGCCAATAT 60.183 38.462 0.84 0.00 36.17 1.28
296 297 6.703165 GGCCTCTTTCTTAAAATGCCAATATG 59.297 38.462 0.00 0.00 35.30 1.78
297 298 7.417797 GGCCTCTTTCTTAAAATGCCAATATGA 60.418 37.037 0.00 0.00 35.30 2.15
298 299 7.436376 GCCTCTTTCTTAAAATGCCAATATGAC 59.564 37.037 0.00 0.00 0.00 3.06
299 300 8.469200 CCTCTTTCTTAAAATGCCAATATGACA 58.531 33.333 0.00 0.00 0.00 3.58
300 301 9.859427 CTCTTTCTTAAAATGCCAATATGACAA 57.141 29.630 0.00 0.00 0.00 3.18
301 302 9.859427 TCTTTCTTAAAATGCCAATATGACAAG 57.141 29.630 0.00 0.00 0.00 3.16
302 303 8.477984 TTTCTTAAAATGCCAATATGACAAGC 57.522 30.769 0.00 0.00 0.00 4.01
303 304 6.572519 TCTTAAAATGCCAATATGACAAGCC 58.427 36.000 0.00 0.00 0.00 4.35
304 305 3.825143 AAATGCCAATATGACAAGCCC 57.175 42.857 0.00 0.00 0.00 5.19
305 306 2.457813 ATGCCAATATGACAAGCCCA 57.542 45.000 0.00 0.00 0.00 5.36
306 307 2.228545 TGCCAATATGACAAGCCCAA 57.771 45.000 0.00 0.00 0.00 4.12
307 308 2.101783 TGCCAATATGACAAGCCCAAG 58.898 47.619 0.00 0.00 0.00 3.61
308 309 1.202452 GCCAATATGACAAGCCCAAGC 60.202 52.381 0.00 0.00 40.32 4.01
309 310 1.410153 CCAATATGACAAGCCCAAGCC 59.590 52.381 0.00 0.00 41.25 4.35
310 311 1.410153 CAATATGACAAGCCCAAGCCC 59.590 52.381 0.00 0.00 41.25 5.19
311 312 0.466189 ATATGACAAGCCCAAGCCCG 60.466 55.000 0.00 0.00 41.25 6.13
312 313 1.847798 TATGACAAGCCCAAGCCCGT 61.848 55.000 0.00 0.00 41.25 5.28
313 314 3.056328 GACAAGCCCAAGCCCGTC 61.056 66.667 0.00 0.00 41.25 4.79
314 315 4.660938 ACAAGCCCAAGCCCGTCC 62.661 66.667 0.00 0.00 41.25 4.79
315 316 4.659172 CAAGCCCAAGCCCGTCCA 62.659 66.667 0.00 0.00 41.25 4.02
316 317 4.351054 AAGCCCAAGCCCGTCCAG 62.351 66.667 0.00 0.00 41.25 3.86
328 329 4.729918 GTCCAGGCCCTGCTGGTG 62.730 72.222 4.81 0.37 41.28 4.17
335 336 3.970410 CCCTGCTGGTGGGCTCAA 61.970 66.667 9.00 0.00 37.99 3.02
336 337 2.115910 CCTGCTGGTGGGCTCAAA 59.884 61.111 0.51 0.00 0.00 2.69
337 338 1.531365 CCTGCTGGTGGGCTCAAAA 60.531 57.895 0.51 0.00 0.00 2.44
338 339 1.662044 CTGCTGGTGGGCTCAAAAC 59.338 57.895 0.00 0.00 0.00 2.43
339 340 0.825010 CTGCTGGTGGGCTCAAAACT 60.825 55.000 0.00 0.00 0.00 2.66
340 341 0.823356 TGCTGGTGGGCTCAAAACTC 60.823 55.000 0.00 0.00 0.00 3.01
341 342 0.823356 GCTGGTGGGCTCAAAACTCA 60.823 55.000 0.00 0.00 0.00 3.41
342 343 1.242076 CTGGTGGGCTCAAAACTCAG 58.758 55.000 0.00 0.00 0.00 3.35
343 344 0.178992 TGGTGGGCTCAAAACTCAGG 60.179 55.000 0.00 0.00 0.00 3.86
344 345 1.527433 GGTGGGCTCAAAACTCAGGC 61.527 60.000 0.00 0.00 34.44 4.85
346 347 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
347 348 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
348 349 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
349 350 0.600057 GCTCAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
350 351 0.600057 CTCAAAACTCAGGCCCAAGC 59.400 55.000 0.00 0.00 38.76 4.01
394 395 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
395 396 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
400 401 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
401 402 1.828224 CCTGGATTTTAGGGCCGGC 60.828 63.158 21.18 21.18 0.00 6.13
402 403 1.828224 CTGGATTTTAGGGCCGGCC 60.828 63.158 38.57 38.57 0.00 6.13
437 438 2.587522 GCCTAGGCCTTGGATTTTAGG 58.412 52.381 34.13 21.74 34.56 2.69
438 439 2.753168 GCCTAGGCCTTGGATTTTAGGG 60.753 54.545 34.13 7.14 34.56 3.53
441 442 2.115510 GCCTTGGATTTTAGGGCCG 58.884 57.895 0.00 0.00 37.12 6.13
442 443 1.391933 GCCTTGGATTTTAGGGCCGG 61.392 60.000 0.00 0.00 37.12 6.13
443 444 1.391933 CCTTGGATTTTAGGGCCGGC 61.392 60.000 21.18 21.18 0.00 6.13
444 445 1.380650 TTGGATTTTAGGGCCGGCC 60.381 57.895 38.57 38.57 0.00 6.13
461 462 3.470888 CCTAGGTGGGCCGACAGG 61.471 72.222 20.36 14.53 40.50 4.00
462 463 3.470888 CTAGGTGGGCCGACAGGG 61.471 72.222 20.36 4.64 40.50 4.45
485 486 2.765807 CCGGAGATGGCCAGGACT 60.766 66.667 13.05 10.74 0.00 3.85
486 487 2.503061 CGGAGATGGCCAGGACTG 59.497 66.667 13.05 5.92 0.00 3.51
487 488 2.060383 CGGAGATGGCCAGGACTGA 61.060 63.158 13.05 0.00 0.00 3.41
520 521 3.674423 GCGTCATTGCTGTTTCATACTC 58.326 45.455 0.00 0.00 0.00 2.59
521 522 3.782250 GCGTCATTGCTGTTTCATACTCG 60.782 47.826 0.00 0.00 0.00 4.18
523 524 4.561213 CGTCATTGCTGTTTCATACTCGTA 59.439 41.667 0.00 0.00 0.00 3.43
533 538 7.648112 GCTGTTTCATACTCGTAATCTACATGA 59.352 37.037 0.00 0.00 0.00 3.07
547 552 7.706281 AATCTACATGAATCTTCTGCGTTAG 57.294 36.000 0.00 0.00 0.00 2.34
548 553 5.043903 TCTACATGAATCTTCTGCGTTAGC 58.956 41.667 0.00 0.00 45.41 3.09
550 555 3.201290 CATGAATCTTCTGCGTTAGCCT 58.799 45.455 0.00 0.00 44.33 4.58
564 569 4.752101 GCGTTAGCCTGAGAACATAATCAT 59.248 41.667 0.00 0.00 37.42 2.45
587 592 2.117137 CGACTATCCCGTGATCAAACG 58.883 52.381 0.00 0.00 43.20 3.60
588 593 1.859080 GACTATCCCGTGATCAAACGC 59.141 52.381 0.00 0.00 42.23 4.84
590 595 2.158957 ACTATCCCGTGATCAAACGCAT 60.159 45.455 0.00 0.00 42.23 4.73
591 596 2.613026 ATCCCGTGATCAAACGCATA 57.387 45.000 0.00 0.00 42.23 3.14
592 597 2.613026 TCCCGTGATCAAACGCATAT 57.387 45.000 0.00 0.00 42.23 1.78
595 600 2.032894 CCCGTGATCAAACGCATATCAC 60.033 50.000 0.00 9.50 43.85 3.06
596 601 2.032894 CCGTGATCAAACGCATATCACC 60.033 50.000 0.00 0.00 44.23 4.02
597 602 2.347568 CGTGATCAAACGCATATCACCG 60.348 50.000 0.00 0.00 44.23 4.94
598 603 2.032894 GTGATCAAACGCATATCACCGG 60.033 50.000 0.00 0.00 42.30 5.28
599 604 2.210116 GATCAAACGCATATCACCGGT 58.790 47.619 0.00 0.00 0.00 5.28
600 605 2.102070 TCAAACGCATATCACCGGTT 57.898 45.000 2.97 0.00 34.22 4.44
601 606 2.428491 TCAAACGCATATCACCGGTTT 58.572 42.857 2.97 0.00 31.06 3.27
602 607 2.814919 TCAAACGCATATCACCGGTTTT 59.185 40.909 2.97 0.00 31.06 2.43
603 608 3.253677 TCAAACGCATATCACCGGTTTTT 59.746 39.130 2.97 0.00 31.06 1.94
648 653 1.136057 CCCGTTTTGCTAAGAACGCTC 60.136 52.381 3.34 0.00 45.20 5.03
659 695 2.738587 AGAACGCTCTCCTGATCCTA 57.261 50.000 0.00 0.00 0.00 2.94
673 709 2.177529 ATCCTACCGACCCCACCAGT 62.178 60.000 0.00 0.00 0.00 4.00
760 797 2.034879 CATTCAGTGGCCTCGCGTT 61.035 57.895 5.77 0.00 0.00 4.84
761 798 0.739462 CATTCAGTGGCCTCGCGTTA 60.739 55.000 5.77 0.00 0.00 3.18
762 799 0.739813 ATTCAGTGGCCTCGCGTTAC 60.740 55.000 5.77 0.00 0.00 2.50
763 800 2.775032 TTCAGTGGCCTCGCGTTACC 62.775 60.000 5.77 6.55 0.00 2.85
764 801 3.307906 AGTGGCCTCGCGTTACCA 61.308 61.111 5.77 9.43 0.00 3.25
765 802 2.813908 GTGGCCTCGCGTTACCAG 60.814 66.667 15.14 1.06 31.46 4.00
766 803 3.307906 TGGCCTCGCGTTACCAGT 61.308 61.111 5.77 0.00 0.00 4.00
767 804 1.978080 TGGCCTCGCGTTACCAGTA 60.978 57.895 5.77 0.00 0.00 2.74
768 805 1.517913 GGCCTCGCGTTACCAGTAC 60.518 63.158 5.77 0.00 0.00 2.73
769 806 1.517913 GCCTCGCGTTACCAGTACC 60.518 63.158 5.77 0.00 0.00 3.34
770 807 1.885157 CCTCGCGTTACCAGTACCA 59.115 57.895 5.77 0.00 0.00 3.25
771 808 0.244450 CCTCGCGTTACCAGTACCAA 59.756 55.000 5.77 0.00 0.00 3.67
772 809 1.343506 CTCGCGTTACCAGTACCAAC 58.656 55.000 5.77 0.00 0.00 3.77
773 810 0.672889 TCGCGTTACCAGTACCAACA 59.327 50.000 5.77 0.00 0.00 3.33
774 811 0.785979 CGCGTTACCAGTACCAACAC 59.214 55.000 0.00 0.00 0.00 3.32
775 812 1.150827 GCGTTACCAGTACCAACACC 58.849 55.000 0.00 0.00 0.00 4.16
776 813 1.270465 GCGTTACCAGTACCAACACCT 60.270 52.381 0.00 0.00 0.00 4.00
777 814 2.680577 CGTTACCAGTACCAACACCTC 58.319 52.381 0.00 0.00 0.00 3.85
778 815 2.036217 CGTTACCAGTACCAACACCTCA 59.964 50.000 0.00 0.00 0.00 3.86
779 816 3.493002 CGTTACCAGTACCAACACCTCAA 60.493 47.826 0.00 0.00 0.00 3.02
780 817 4.453751 GTTACCAGTACCAACACCTCAAA 58.546 43.478 0.00 0.00 0.00 2.69
781 818 3.655615 ACCAGTACCAACACCTCAAAA 57.344 42.857 0.00 0.00 0.00 2.44
782 819 3.970842 ACCAGTACCAACACCTCAAAAA 58.029 40.909 0.00 0.00 0.00 1.94
862 912 0.969894 ACATGCCTATCTCCGCTACC 59.030 55.000 0.00 0.00 0.00 3.18
871 921 1.009900 CTCCGCTACCGCTAGTTCG 60.010 63.158 0.00 0.00 0.00 3.95
970 1031 1.360192 GCACAATTATCGCCCCAGC 59.640 57.895 0.00 0.00 0.00 4.85
1305 1366 2.477893 TTCCCCCATTGGTGTGGCT 61.478 57.895 1.20 0.00 37.96 4.75
1312 1373 1.615116 CCATTGGTGTGGCTCTCATGT 60.615 52.381 0.00 0.00 31.43 3.21
1404 1465 0.179108 CGCCTGCCAGTAGGTAGTTC 60.179 60.000 3.63 0.00 45.27 3.01
1450 1514 2.361610 CCGTTTCATGGCTGGGCT 60.362 61.111 0.00 0.00 0.00 5.19
1496 1560 1.355916 CTGGTAGCTACTCGCCGTC 59.644 63.158 22.74 5.54 40.39 4.79
1553 1625 1.514087 CATGGGTCCATGTGCTTGC 59.486 57.895 19.04 0.00 46.20 4.01
1600 1672 2.126965 GTCTCGTCGGTGGTGTCG 60.127 66.667 0.00 0.00 0.00 4.35
1602 1674 2.428569 CTCGTCGGTGGTGTCGTG 60.429 66.667 0.00 0.00 0.00 4.35
1605 1677 2.414179 GTCGGTGGTGTCGTGACA 59.586 61.111 0.00 0.00 39.32 3.58
1630 1702 2.642139 TTGTTACTCCGCTAGAACCG 57.358 50.000 0.00 0.00 0.00 4.44
1634 1706 2.842188 TACTCCGCTAGAACCGGGCA 62.842 60.000 6.32 0.00 45.60 5.36
1635 1707 3.432051 CTCCGCTAGAACCGGGCAG 62.432 68.421 6.32 0.00 45.60 4.85
1642 1714 1.139058 CTAGAACCGGGCAGCAGTAAT 59.861 52.381 6.32 0.00 0.00 1.89
1643 1715 0.328258 AGAACCGGGCAGCAGTAATT 59.672 50.000 6.32 0.00 0.00 1.40
1674 1746 4.709397 TCCTATAAAAATGGCAGTTGGTGG 59.291 41.667 0.00 0.36 0.00 4.61
1680 1752 0.112995 ATGGCAGTTGGTGGTGATGT 59.887 50.000 0.00 0.00 0.00 3.06
1685 1757 1.032014 AGTTGGTGGTGATGTTGTGC 58.968 50.000 0.00 0.00 0.00 4.57
1693 1765 1.303561 TGATGTTGTGCCTGCCTCC 60.304 57.895 0.00 0.00 0.00 4.30
1698 1770 3.214190 TTGTGCCTGCCTCCATGCT 62.214 57.895 0.00 0.00 34.22 3.79
1703 1775 1.003928 TGCCTGCCTCCATGCTATATG 59.996 52.381 0.00 0.00 34.22 1.78
1704 1776 1.004044 GCCTGCCTCCATGCTATATGT 59.996 52.381 0.00 0.00 30.96 2.29
1705 1777 2.708051 CCTGCCTCCATGCTATATGTG 58.292 52.381 0.00 0.00 0.00 3.21
1707 1779 1.420891 TGCCTCCATGCTATATGTGCA 59.579 47.619 7.51 7.51 44.95 4.57
1708 1780 2.158638 TGCCTCCATGCTATATGTGCAA 60.159 45.455 8.85 0.00 44.01 4.08
1711 1783 3.373130 CCTCCATGCTATATGTGCAATCG 59.627 47.826 8.85 2.63 44.01 3.34
1721 1793 1.737838 TGTGCAATCGGATCTGGAAC 58.262 50.000 0.62 0.00 0.00 3.62
1732 1804 2.482142 GGATCTGGAACGTAAGGCTGAG 60.482 54.545 0.00 0.00 46.39 3.35
1734 1806 2.244695 TCTGGAACGTAAGGCTGAGAA 58.755 47.619 0.00 0.00 46.39 2.87
1746 1818 1.134371 GGCTGAGAATGAGGTGGGTAC 60.134 57.143 0.00 0.00 0.00 3.34
1749 1821 3.451178 GCTGAGAATGAGGTGGGTACTTA 59.549 47.826 0.00 0.00 0.00 2.24
1750 1822 4.081087 GCTGAGAATGAGGTGGGTACTTAA 60.081 45.833 0.00 0.00 0.00 1.85
1752 1824 5.091552 TGAGAATGAGGTGGGTACTTAACT 58.908 41.667 0.00 0.00 0.00 2.24
1756 1829 2.910319 TGAGGTGGGTACTTAACTGCAT 59.090 45.455 0.00 0.00 0.00 3.96
1757 1830 3.329520 TGAGGTGGGTACTTAACTGCATT 59.670 43.478 0.00 0.00 0.00 3.56
1780 1853 4.939368 TGGAAACACCCCGCACCG 62.939 66.667 0.00 0.00 38.00 4.94
1781 1854 4.629523 GGAAACACCCCGCACCGA 62.630 66.667 0.00 0.00 0.00 4.69
1798 1873 4.537015 CACCGAACAGAATTTTGGAGAAC 58.463 43.478 0.57 0.00 34.43 3.01
1801 1876 4.211389 CGAACAGAATTTTGGAGAACACG 58.789 43.478 0.57 0.00 0.00 4.49
1811 1886 2.285083 TGGAGAACACGTCCAAAACAG 58.715 47.619 0.00 0.00 41.32 3.16
1814 1889 3.242641 GGAGAACACGTCCAAAACAGAAC 60.243 47.826 0.00 0.00 33.84 3.01
1820 1895 0.234884 GTCCAAAACAGAACGCCGAG 59.765 55.000 0.00 0.00 0.00 4.63
1821 1896 0.179067 TCCAAAACAGAACGCCGAGT 60.179 50.000 0.00 0.00 0.00 4.18
1822 1897 0.041312 CCAAAACAGAACGCCGAGTG 60.041 55.000 0.00 0.00 0.00 3.51
1830 1905 3.883744 AACGCCGAGTGCCTGGAAG 62.884 63.158 0.00 0.00 36.24 3.46
1836 1911 1.543429 CCGAGTGCCTGGAAGTTTCTT 60.543 52.381 0.00 0.00 0.00 2.52
1841 1916 2.224314 GTGCCTGGAAGTTTCTTCTTCG 59.776 50.000 0.00 0.00 43.10 3.79
1846 1921 2.223971 TGGAAGTTTCTTCTTCGCTCGT 60.224 45.455 8.96 0.00 43.10 4.18
1853 1928 2.394708 TCTTCTTCGCTCGTGAAACAG 58.605 47.619 0.00 0.00 35.74 3.16
1864 1939 1.709203 CGTGAAACAGACGAGTCTTCG 59.291 52.381 2.55 0.00 45.44 3.79
1868 1943 5.131577 GTGAAACAGACGAGTCTTCGAGAG 61.132 50.000 2.55 0.00 43.07 3.20
1882 1957 0.034089 CGAGAGCCCCTCCCAAATTT 60.034 55.000 0.00 0.00 38.71 1.82
1887 1962 1.037579 GCCCCTCCCAAATTTCTCGG 61.038 60.000 0.00 0.00 0.00 4.63
1890 1965 1.429423 CTCCCAAATTTCTCGGCGC 59.571 57.895 0.00 0.00 0.00 6.53
1894 1969 2.046700 AAATTTCTCGGCGCCGGA 60.047 55.556 44.95 35.96 40.25 5.14
1907 1982 2.124236 CCGGACGCTACCCTCTCT 60.124 66.667 0.00 0.00 0.00 3.10
1919 1994 4.856607 CTCTCTTCCGCGGCGACC 62.857 72.222 25.92 0.00 0.00 4.79
1960 2035 4.787135 AGGGATCCTCCTCTTGAAAATC 57.213 45.455 12.58 0.00 36.57 2.17
1961 2036 4.378961 AGGGATCCTCCTCTTGAAAATCT 58.621 43.478 12.58 0.00 36.57 2.40
1962 2037 4.792972 AGGGATCCTCCTCTTGAAAATCTT 59.207 41.667 12.58 0.00 36.57 2.40
1971 2046 9.454859 CCTCCTCTTGAAAATCTTTAGTTGTAT 57.545 33.333 0.00 0.00 0.00 2.29
1983 2058 9.668497 AATCTTTAGTTGTATTTAGGGTCTCAC 57.332 33.333 0.00 0.00 0.00 3.51
1990 2065 8.822805 AGTTGTATTTAGGGTCTCACTAAATCA 58.177 33.333 16.82 12.86 43.84 2.57
1998 2073 7.020827 AGGGTCTCACTAAATCAGATTTTGA 57.979 36.000 20.18 14.48 40.85 2.69
2020 2097 1.120530 TCAAGCTTCCCCGTATCTCC 58.879 55.000 0.00 0.00 0.00 3.71
2021 2098 0.106894 CAAGCTTCCCCGTATCTCCC 59.893 60.000 0.00 0.00 0.00 4.30
2022 2099 0.326238 AAGCTTCCCCGTATCTCCCA 60.326 55.000 0.00 0.00 0.00 4.37
2039 2125 1.270518 CCCATTCTAGATCTGGCCGTG 60.271 57.143 5.18 2.16 0.00 4.94
2057 2143 2.760378 GGGAGATGGAGCCATGGCA 61.760 63.158 37.18 18.81 44.88 4.92
2059 2145 1.897615 GAGATGGAGCCATGGCAGC 60.898 63.158 37.18 27.15 44.88 5.25
2084 2172 3.030668 GCTTTTGCTGCCATGTAAGTT 57.969 42.857 0.00 0.00 43.35 2.66
2085 2173 3.392882 GCTTTTGCTGCCATGTAAGTTT 58.607 40.909 0.00 0.00 43.35 2.66
2092 2180 2.421424 CTGCCATGTAAGTTTCTCTGCC 59.579 50.000 0.00 0.00 0.00 4.85
2094 2182 2.879756 GCCATGTAAGTTTCTCTGCCCA 60.880 50.000 0.00 0.00 0.00 5.36
2095 2183 3.624777 CCATGTAAGTTTCTCTGCCCAT 58.375 45.455 0.00 0.00 0.00 4.00
2112 2200 4.974438 TCCGTCCTGCCACCCCTT 62.974 66.667 0.00 0.00 0.00 3.95
2121 2209 0.548926 TGCCACCCCTTCTGGTATGA 60.549 55.000 0.00 0.00 36.67 2.15
2123 2211 1.682087 GCCACCCCTTCTGGTATGAAC 60.682 57.143 0.00 0.00 36.67 3.18
2209 2298 2.507102 CACGATTGAGCGCGACCT 60.507 61.111 12.10 0.00 33.86 3.85
2214 2303 1.079503 GATTGAGCGCGACCTTTTCT 58.920 50.000 12.10 0.00 0.00 2.52
2215 2304 1.464997 GATTGAGCGCGACCTTTTCTT 59.535 47.619 12.10 0.00 0.00 2.52
2216 2305 0.865769 TTGAGCGCGACCTTTTCTTC 59.134 50.000 12.10 0.00 0.00 2.87
2217 2306 0.033504 TGAGCGCGACCTTTTCTTCT 59.966 50.000 12.10 0.00 0.00 2.85
2218 2307 1.149148 GAGCGCGACCTTTTCTTCTT 58.851 50.000 12.10 0.00 0.00 2.52
2219 2308 1.127029 GAGCGCGACCTTTTCTTCTTC 59.873 52.381 12.10 0.00 0.00 2.87
2220 2309 1.149148 GCGCGACCTTTTCTTCTTCT 58.851 50.000 12.10 0.00 0.00 2.85
2221 2310 1.127029 GCGCGACCTTTTCTTCTTCTC 59.873 52.381 12.10 0.00 0.00 2.87
2222 2311 1.727335 CGCGACCTTTTCTTCTTCTCC 59.273 52.381 0.00 0.00 0.00 3.71
2223 2312 2.077627 GCGACCTTTTCTTCTTCTCCC 58.922 52.381 0.00 0.00 0.00 4.30
2224 2313 2.289756 GCGACCTTTTCTTCTTCTCCCT 60.290 50.000 0.00 0.00 0.00 4.20
2225 2314 3.591023 CGACCTTTTCTTCTTCTCCCTC 58.409 50.000 0.00 0.00 0.00 4.30
2226 2315 3.591023 GACCTTTTCTTCTTCTCCCTCG 58.409 50.000 0.00 0.00 0.00 4.63
2227 2316 3.240302 ACCTTTTCTTCTTCTCCCTCGA 58.760 45.455 0.00 0.00 0.00 4.04
2228 2317 3.841255 ACCTTTTCTTCTTCTCCCTCGAT 59.159 43.478 0.00 0.00 0.00 3.59
2229 2318 4.187694 CCTTTTCTTCTTCTCCCTCGATG 58.812 47.826 0.00 0.00 0.00 3.84
2230 2319 4.081420 CCTTTTCTTCTTCTCCCTCGATGA 60.081 45.833 0.00 0.00 0.00 2.92
2231 2320 5.396213 CCTTTTCTTCTTCTCCCTCGATGAT 60.396 44.000 0.00 0.00 0.00 2.45
2232 2321 6.183360 CCTTTTCTTCTTCTCCCTCGATGATA 60.183 42.308 0.00 0.00 0.00 2.15
2233 2322 6.985653 TTTCTTCTTCTCCCTCGATGATAT 57.014 37.500 0.00 0.00 0.00 1.63
2234 2323 6.985653 TTCTTCTTCTCCCTCGATGATATT 57.014 37.500 0.00 0.00 0.00 1.28
2235 2324 6.582677 TCTTCTTCTCCCTCGATGATATTC 57.417 41.667 0.00 0.00 0.00 1.75
2236 2325 5.478679 TCTTCTTCTCCCTCGATGATATTCC 59.521 44.000 0.00 0.00 0.00 3.01
2237 2326 3.759086 TCTTCTCCCTCGATGATATTCCG 59.241 47.826 0.00 0.00 0.00 4.30
2238 2327 1.819288 TCTCCCTCGATGATATTCCGC 59.181 52.381 0.00 0.00 0.00 5.54
2239 2328 1.546029 CTCCCTCGATGATATTCCGCA 59.454 52.381 0.00 0.00 0.00 5.69
2240 2329 2.167281 CTCCCTCGATGATATTCCGCAT 59.833 50.000 0.00 0.00 0.00 4.73
2241 2330 2.166459 TCCCTCGATGATATTCCGCATC 59.834 50.000 0.00 0.00 37.99 3.91
2242 2331 2.094026 CCCTCGATGATATTCCGCATCA 60.094 50.000 0.00 0.00 40.63 3.07
2243 2332 3.185330 CCTCGATGATATTCCGCATCAG 58.815 50.000 0.00 0.00 40.63 2.90
2244 2333 2.602211 CTCGATGATATTCCGCATCAGC 59.398 50.000 0.00 0.00 40.63 4.26
2245 2334 1.662629 CGATGATATTCCGCATCAGCC 59.337 52.381 0.00 0.00 40.63 4.85
2246 2335 2.012673 GATGATATTCCGCATCAGCCC 58.987 52.381 0.00 0.00 40.39 5.19
2247 2336 0.320683 TGATATTCCGCATCAGCCCG 60.321 55.000 0.00 0.00 37.52 6.13
2248 2337 0.320771 GATATTCCGCATCAGCCCGT 60.321 55.000 0.00 0.00 37.52 5.28
2249 2338 0.108585 ATATTCCGCATCAGCCCGTT 59.891 50.000 0.00 0.00 37.52 4.44
2250 2339 0.813610 TATTCCGCATCAGCCCGTTG 60.814 55.000 0.00 0.00 37.52 4.10
2251 2340 2.535485 ATTCCGCATCAGCCCGTTGA 62.535 55.000 0.00 0.00 37.52 3.18
2252 2341 3.197790 CCGCATCAGCCCGTTGAG 61.198 66.667 0.00 0.00 37.52 3.02
2253 2342 2.125552 CGCATCAGCCCGTTGAGA 60.126 61.111 0.00 0.00 37.52 3.27
2254 2343 1.741401 CGCATCAGCCCGTTGAGAA 60.741 57.895 0.00 0.00 37.52 2.87
2255 2344 1.298157 CGCATCAGCCCGTTGAGAAA 61.298 55.000 0.00 0.00 37.52 2.52
2256 2345 0.449388 GCATCAGCCCGTTGAGAAAG 59.551 55.000 0.00 0.00 33.58 2.62
2257 2346 1.945819 GCATCAGCCCGTTGAGAAAGA 60.946 52.381 0.00 0.00 33.58 2.52
2258 2347 2.636830 CATCAGCCCGTTGAGAAAGAT 58.363 47.619 0.00 0.00 0.00 2.40
2259 2348 2.099141 TCAGCCCGTTGAGAAAGATG 57.901 50.000 0.00 0.00 0.00 2.90
2260 2349 1.089920 CAGCCCGTTGAGAAAGATGG 58.910 55.000 0.00 0.00 0.00 3.51
2261 2350 0.984230 AGCCCGTTGAGAAAGATGGA 59.016 50.000 0.00 0.00 0.00 3.41
2262 2351 1.561542 AGCCCGTTGAGAAAGATGGAT 59.438 47.619 0.00 0.00 0.00 3.41
2263 2352 1.672881 GCCCGTTGAGAAAGATGGATG 59.327 52.381 0.00 0.00 0.00 3.51
2264 2353 2.941415 GCCCGTTGAGAAAGATGGATGT 60.941 50.000 0.00 0.00 0.00 3.06
2265 2354 2.679837 CCCGTTGAGAAAGATGGATGTG 59.320 50.000 0.00 0.00 0.00 3.21
2266 2355 2.096496 CCGTTGAGAAAGATGGATGTGC 59.904 50.000 0.00 0.00 0.00 4.57
2267 2356 2.096496 CGTTGAGAAAGATGGATGTGCC 59.904 50.000 0.00 0.00 37.10 5.01
2283 2372 3.631046 CCATCTAGGCGCCCCTCC 61.631 72.222 26.15 0.00 41.75 4.30
2284 2373 3.631046 CATCTAGGCGCCCCTCCC 61.631 72.222 26.15 0.00 41.75 4.30
2309 2398 4.753662 CGGGAGGTCGGAGGTCCA 62.754 72.222 7.64 0.00 35.14 4.02
2310 2399 2.760385 GGGAGGTCGGAGGTCCAG 60.760 72.222 7.64 0.00 35.14 3.86
2311 2400 2.760385 GGAGGTCGGAGGTCCAGG 60.760 72.222 0.00 0.00 35.14 4.45
2312 2401 3.462678 GAGGTCGGAGGTCCAGGC 61.463 72.222 0.00 0.00 35.14 4.85
2319 2408 4.021925 GAGGTCCAGGCCGCTGTT 62.022 66.667 0.00 0.00 0.00 3.16
2320 2409 4.335647 AGGTCCAGGCCGCTGTTG 62.336 66.667 0.00 0.00 0.00 3.33
2379 2468 4.465512 GGCGCGGTGTGCTGAATG 62.466 66.667 8.83 0.00 43.27 2.67
2381 2470 3.425713 CGCGGTGTGCTGAATGCT 61.426 61.111 0.00 0.00 43.27 3.79
2382 2471 2.177531 GCGGTGTGCTGAATGCTG 59.822 61.111 0.00 0.00 43.37 4.41
2383 2472 2.177531 CGGTGTGCTGAATGCTGC 59.822 61.111 0.00 0.00 43.37 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.369209 CAGCGCCAAAAGACGTGTG 60.369 57.895 2.29 0.00 0.00 3.82
1 2 3.022287 CAGCGCCAAAAGACGTGT 58.978 55.556 2.29 0.00 0.00 4.49
2 3 2.427410 GCAGCGCCAAAAGACGTG 60.427 61.111 2.29 0.00 0.00 4.49
12 13 3.488090 GTCTACAACGGCAGCGCC 61.488 66.667 2.29 9.20 46.75 6.53
30 31 2.872370 TCCTTTCTACGCGTTTAGAGC 58.128 47.619 20.78 0.00 29.67 4.09
31 32 3.858238 CCTTCCTTTCTACGCGTTTAGAG 59.142 47.826 20.78 9.11 29.67 2.43
50 51 0.464373 ATGAATGACGCATCGGCCTT 60.464 50.000 0.00 0.00 31.60 4.35
98 99 3.637273 GGCCAGGTATAGCGGGGG 61.637 72.222 20.50 13.01 0.00 5.40
99 100 2.224159 ATGGCCAGGTATAGCGGGG 61.224 63.158 20.50 15.22 0.00 5.73
100 101 1.003355 CATGGCCAGGTATAGCGGG 60.003 63.158 13.05 15.80 0.00 6.13
101 102 1.003355 CCATGGCCAGGTATAGCGG 60.003 63.158 17.55 8.01 0.00 5.52
102 103 1.003355 CCCATGGCCAGGTATAGCG 60.003 63.158 17.55 0.00 0.00 4.26
103 104 1.303643 GCCCATGGCCAGGTATAGC 60.304 63.158 17.55 9.79 44.06 2.97
147 148 1.237285 CCTCAGTTTTCTGCCGTGGG 61.237 60.000 0.00 0.00 46.59 4.61
148 149 1.856265 GCCTCAGTTTTCTGCCGTGG 61.856 60.000 0.00 0.00 46.59 4.94
149 150 1.576421 GCCTCAGTTTTCTGCCGTG 59.424 57.895 0.00 0.00 46.59 4.94
150 151 1.600916 GGCCTCAGTTTTCTGCCGT 60.601 57.895 0.00 0.00 46.59 5.68
151 152 2.335712 GGGCCTCAGTTTTCTGCCG 61.336 63.158 0.84 0.00 46.59 5.69
152 153 1.228552 TGGGCCTCAGTTTTCTGCC 60.229 57.895 4.53 0.00 46.59 4.85
153 154 1.246737 CCTGGGCCTCAGTTTTCTGC 61.247 60.000 16.96 0.00 46.59 4.26
154 155 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
155 156 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
156 157 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
172 173 3.810188 GGTAGGGCTTGGGAGGGC 61.810 72.222 0.00 0.00 0.00 5.19
173 174 1.697754 ATGGTAGGGCTTGGGAGGG 60.698 63.158 0.00 0.00 0.00 4.30
174 175 0.988145 TGATGGTAGGGCTTGGGAGG 60.988 60.000 0.00 0.00 0.00 4.30
175 176 0.918983 TTGATGGTAGGGCTTGGGAG 59.081 55.000 0.00 0.00 0.00 4.30
176 177 0.623723 GTTGATGGTAGGGCTTGGGA 59.376 55.000 0.00 0.00 0.00 4.37
177 178 0.395724 GGTTGATGGTAGGGCTTGGG 60.396 60.000 0.00 0.00 0.00 4.12
178 179 0.625849 AGGTTGATGGTAGGGCTTGG 59.374 55.000 0.00 0.00 0.00 3.61
179 180 2.505819 AGTAGGTTGATGGTAGGGCTTG 59.494 50.000 0.00 0.00 0.00 4.01
180 181 2.846950 AGTAGGTTGATGGTAGGGCTT 58.153 47.619 0.00 0.00 0.00 4.35
181 182 2.570386 AGTAGGTTGATGGTAGGGCT 57.430 50.000 0.00 0.00 0.00 5.19
182 183 3.646736 AAAGTAGGTTGATGGTAGGGC 57.353 47.619 0.00 0.00 0.00 5.19
183 184 5.174037 TGAAAAGTAGGTTGATGGTAGGG 57.826 43.478 0.00 0.00 0.00 3.53
184 185 6.743575 CTTGAAAAGTAGGTTGATGGTAGG 57.256 41.667 0.00 0.00 39.70 3.18
200 201 2.727103 CCGGTCTTGGGCTTGAAAA 58.273 52.632 0.00 0.00 0.00 2.29
201 202 4.492604 CCGGTCTTGGGCTTGAAA 57.507 55.556 0.00 0.00 0.00 2.69
208 209 3.411517 AGATGGGCCGGTCTTGGG 61.412 66.667 5.77 0.00 0.00 4.12
209 210 2.124570 CAGATGGGCCGGTCTTGG 60.125 66.667 5.77 0.00 0.00 3.61
210 211 2.124570 CCAGATGGGCCGGTCTTG 60.125 66.667 5.77 0.00 0.00 3.02
227 228 0.667487 GGCTTTTCAGGGCTTTTCGC 60.667 55.000 0.00 0.00 38.13 4.70
228 229 0.038251 GGGCTTTTCAGGGCTTTTCG 60.038 55.000 0.00 0.00 0.00 3.46
229 230 1.342074 AGGGCTTTTCAGGGCTTTTC 58.658 50.000 0.00 0.00 0.00 2.29
230 231 1.694150 GAAGGGCTTTTCAGGGCTTTT 59.306 47.619 0.00 0.00 0.00 2.27
231 232 1.342074 GAAGGGCTTTTCAGGGCTTT 58.658 50.000 0.00 0.00 0.00 3.51
232 233 0.895559 CGAAGGGCTTTTCAGGGCTT 60.896 55.000 3.86 0.00 0.00 4.35
233 234 1.303643 CGAAGGGCTTTTCAGGGCT 60.304 57.895 3.86 0.00 0.00 5.19
234 235 3.278157 CGAAGGGCTTTTCAGGGC 58.722 61.111 3.86 0.00 0.00 5.19
253 254 2.203209 CGACCCATGGCCCTAAGC 60.203 66.667 6.09 0.00 42.60 3.09
254 255 2.510906 CCGACCCATGGCCCTAAG 59.489 66.667 6.09 0.00 0.00 2.18
255 256 3.093835 CCCGACCCATGGCCCTAA 61.094 66.667 6.09 0.00 0.00 2.69
261 262 2.893682 GAAAGAGGCCCGACCCATGG 62.894 65.000 4.14 4.14 40.58 3.66
262 263 1.452108 GAAAGAGGCCCGACCCATG 60.452 63.158 0.00 0.00 40.58 3.66
263 264 1.208165 AAGAAAGAGGCCCGACCCAT 61.208 55.000 0.00 0.00 40.58 4.00
264 265 0.545787 TAAGAAAGAGGCCCGACCCA 60.546 55.000 0.00 0.00 40.58 4.51
265 266 0.616891 TTAAGAAAGAGGCCCGACCC 59.383 55.000 0.00 0.00 40.58 4.46
266 267 2.484742 TTTAAGAAAGAGGCCCGACC 57.515 50.000 0.00 0.00 39.61 4.79
267 268 3.427638 GCATTTTAAGAAAGAGGCCCGAC 60.428 47.826 0.00 0.00 0.00 4.79
268 269 2.752903 GCATTTTAAGAAAGAGGCCCGA 59.247 45.455 0.00 0.00 0.00 5.14
269 270 2.159240 GGCATTTTAAGAAAGAGGCCCG 60.159 50.000 0.00 0.00 35.79 6.13
270 271 2.831526 TGGCATTTTAAGAAAGAGGCCC 59.168 45.455 0.00 0.00 38.55 5.80
271 272 4.535526 TTGGCATTTTAAGAAAGAGGCC 57.464 40.909 0.00 0.00 39.19 5.19
272 273 7.436376 GTCATATTGGCATTTTAAGAAAGAGGC 59.564 37.037 0.00 0.00 33.06 4.70
273 274 8.469200 TGTCATATTGGCATTTTAAGAAAGAGG 58.531 33.333 0.00 0.00 0.00 3.69
274 275 9.859427 TTGTCATATTGGCATTTTAAGAAAGAG 57.141 29.630 0.00 0.00 29.04 2.85
275 276 9.859427 CTTGTCATATTGGCATTTTAAGAAAGA 57.141 29.630 0.00 0.00 29.04 2.52
276 277 8.598075 GCTTGTCATATTGGCATTTTAAGAAAG 58.402 33.333 0.00 0.00 29.04 2.62
277 278 7.548780 GGCTTGTCATATTGGCATTTTAAGAAA 59.451 33.333 0.00 0.00 29.04 2.52
278 279 7.041107 GGCTTGTCATATTGGCATTTTAAGAA 58.959 34.615 0.00 0.00 29.04 2.52
279 280 6.406849 GGGCTTGTCATATTGGCATTTTAAGA 60.407 38.462 0.00 0.00 29.04 2.10
280 281 5.754890 GGGCTTGTCATATTGGCATTTTAAG 59.245 40.000 0.00 0.00 29.04 1.85
281 282 5.188555 TGGGCTTGTCATATTGGCATTTTAA 59.811 36.000 0.00 0.00 29.04 1.52
282 283 4.713814 TGGGCTTGTCATATTGGCATTTTA 59.286 37.500 0.00 0.00 29.04 1.52
283 284 3.518705 TGGGCTTGTCATATTGGCATTTT 59.481 39.130 0.00 0.00 29.04 1.82
284 285 3.106054 TGGGCTTGTCATATTGGCATTT 58.894 40.909 0.00 0.00 29.04 2.32
285 286 2.749600 TGGGCTTGTCATATTGGCATT 58.250 42.857 0.00 0.00 29.04 3.56
286 287 2.457813 TGGGCTTGTCATATTGGCAT 57.542 45.000 0.00 0.00 29.04 4.40
287 288 2.101783 CTTGGGCTTGTCATATTGGCA 58.898 47.619 0.00 0.00 0.00 4.92
288 289 1.202452 GCTTGGGCTTGTCATATTGGC 60.202 52.381 0.00 0.00 35.22 4.52
289 290 1.410153 GGCTTGGGCTTGTCATATTGG 59.590 52.381 0.00 0.00 38.73 3.16
290 291 1.410153 GGGCTTGGGCTTGTCATATTG 59.590 52.381 0.00 0.00 38.73 1.90
291 292 1.780503 GGGCTTGGGCTTGTCATATT 58.219 50.000 0.00 0.00 38.73 1.28
292 293 0.466189 CGGGCTTGGGCTTGTCATAT 60.466 55.000 0.00 0.00 38.73 1.78
293 294 1.077787 CGGGCTTGGGCTTGTCATA 60.078 57.895 0.00 0.00 38.73 2.15
294 295 2.361610 CGGGCTTGGGCTTGTCAT 60.362 61.111 0.00 0.00 38.73 3.06
295 296 3.842925 GACGGGCTTGGGCTTGTCA 62.843 63.158 10.21 0.00 39.98 3.58
296 297 3.056328 GACGGGCTTGGGCTTGTC 61.056 66.667 0.00 0.00 38.73 3.18
297 298 4.660938 GGACGGGCTTGGGCTTGT 62.661 66.667 0.00 0.00 38.73 3.16
298 299 4.659172 TGGACGGGCTTGGGCTTG 62.659 66.667 0.00 0.00 38.73 4.01
299 300 4.351054 CTGGACGGGCTTGGGCTT 62.351 66.667 0.00 0.00 38.73 4.35
319 320 1.531365 TTTTGAGCCCACCAGCAGG 60.531 57.895 0.00 0.00 42.21 4.85
320 321 0.825010 AGTTTTGAGCCCACCAGCAG 60.825 55.000 0.00 0.00 34.23 4.24
321 322 0.823356 GAGTTTTGAGCCCACCAGCA 60.823 55.000 0.00 0.00 34.23 4.41
322 323 0.823356 TGAGTTTTGAGCCCACCAGC 60.823 55.000 0.00 0.00 0.00 4.85
323 324 1.242076 CTGAGTTTTGAGCCCACCAG 58.758 55.000 0.00 0.00 0.00 4.00
324 325 0.178992 CCTGAGTTTTGAGCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
325 326 1.527433 GCCTGAGTTTTGAGCCCACC 61.527 60.000 0.00 0.00 0.00 4.61
326 327 1.527433 GGCCTGAGTTTTGAGCCCAC 61.527 60.000 0.00 0.00 37.66 4.61
327 328 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
328 329 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
329 330 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
330 331 0.600057 CTTGGGCCTGAGTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
331 332 0.600057 GCTTGGGCCTGAGTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
332 333 2.732289 GCTTGGGCCTGAGTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
375 376 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
376 377 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
377 378 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
383 384 1.828224 GCCGGCCCTAAAATCCAGG 60.828 63.158 18.11 0.00 0.00 4.45
384 385 1.828224 GGCCGGCCCTAAAATCCAG 60.828 63.158 36.64 0.00 0.00 3.86
385 386 2.277404 GGCCGGCCCTAAAATCCA 59.723 61.111 36.64 0.00 0.00 3.41
417 418 2.587522 CCTAAAATCCAAGGCCTAGGC 58.412 52.381 26.55 26.55 41.06 3.93
418 419 2.753168 GCCCTAAAATCCAAGGCCTAGG 60.753 54.545 5.16 6.28 37.66 3.02
419 420 2.587522 GCCCTAAAATCCAAGGCCTAG 58.412 52.381 5.16 0.00 37.66 3.02
420 421 2.748209 GCCCTAAAATCCAAGGCCTA 57.252 50.000 5.16 0.00 37.66 3.93
421 422 3.615597 GCCCTAAAATCCAAGGCCT 57.384 52.632 0.00 0.00 37.66 5.19
423 424 1.391933 CCGGCCCTAAAATCCAAGGC 61.392 60.000 0.00 0.00 43.09 4.35
424 425 1.391933 GCCGGCCCTAAAATCCAAGG 61.392 60.000 18.11 0.00 0.00 3.61
425 426 1.391933 GGCCGGCCCTAAAATCCAAG 61.392 60.000 36.64 0.00 0.00 3.61
426 427 1.380650 GGCCGGCCCTAAAATCCAA 60.381 57.895 36.64 0.00 0.00 3.53
427 428 2.277404 GGCCGGCCCTAAAATCCA 59.723 61.111 36.64 0.00 0.00 3.41
444 445 3.470888 CCTGTCGGCCCACCTAGG 61.471 72.222 7.41 7.41 37.03 3.02
445 446 3.470888 CCCTGTCGGCCCACCTAG 61.471 72.222 0.00 0.00 0.00 3.02
468 469 2.765807 AGTCCTGGCCATCTCCGG 60.766 66.667 5.51 3.08 0.00 5.14
469 470 2.060383 TCAGTCCTGGCCATCTCCG 61.060 63.158 5.51 0.00 0.00 4.63
470 471 1.524482 GTCAGTCCTGGCCATCTCC 59.476 63.158 5.51 0.00 0.00 3.71
520 521 5.687730 ACGCAGAAGATTCATGTAGATTACG 59.312 40.000 0.00 0.00 0.00 3.18
521 522 7.470289 AACGCAGAAGATTCATGTAGATTAC 57.530 36.000 0.00 0.00 0.00 1.89
523 524 6.201806 GCTAACGCAGAAGATTCATGTAGATT 59.798 38.462 0.00 0.00 35.78 2.40
533 538 2.497675 TCTCAGGCTAACGCAGAAGATT 59.502 45.455 0.00 0.00 38.10 2.40
547 552 4.210120 GTCGTGATGATTATGTTCTCAGGC 59.790 45.833 0.00 0.00 0.00 4.85
548 553 5.595885 AGTCGTGATGATTATGTTCTCAGG 58.404 41.667 0.00 0.00 0.00 3.86
550 555 7.371159 GGATAGTCGTGATGATTATGTTCTCA 58.629 38.462 0.00 0.00 30.35 3.27
618 623 0.466543 GCAAAACGGGGAGGGTTTTT 59.533 50.000 0.31 0.00 43.06 1.94
619 624 0.397957 AGCAAAACGGGGAGGGTTTT 60.398 50.000 0.00 0.00 45.62 2.43
620 625 0.479378 TAGCAAAACGGGGAGGGTTT 59.521 50.000 0.00 0.00 39.15 3.27
621 626 0.479378 TTAGCAAAACGGGGAGGGTT 59.521 50.000 0.00 0.00 0.00 4.11
622 627 0.037734 CTTAGCAAAACGGGGAGGGT 59.962 55.000 0.00 0.00 0.00 4.34
623 628 0.326927 TCTTAGCAAAACGGGGAGGG 59.673 55.000 0.00 0.00 0.00 4.30
628 633 0.872388 AGCGTTCTTAGCAAAACGGG 59.128 50.000 9.34 0.00 46.20 5.28
631 636 3.067833 AGGAGAGCGTTCTTAGCAAAAC 58.932 45.455 2.39 0.00 37.01 2.43
636 641 2.544903 GGATCAGGAGAGCGTTCTTAGC 60.545 54.545 2.39 0.00 32.53 3.09
648 653 0.828343 GGGGTCGGTAGGATCAGGAG 60.828 65.000 0.00 0.00 0.00 3.69
659 695 4.250170 AGGACTGGTGGGGTCGGT 62.250 66.667 0.00 0.00 34.82 4.69
755 792 0.785979 GTGTTGGTACTGGTAACGCG 59.214 55.000 3.53 3.53 42.51 6.01
760 797 4.774660 TTTTGAGGTGTTGGTACTGGTA 57.225 40.909 0.00 0.00 0.00 3.25
761 798 3.655615 TTTTGAGGTGTTGGTACTGGT 57.344 42.857 0.00 0.00 0.00 4.00
788 825 1.288335 TGGGGTGGTGGTACTGTTTTT 59.712 47.619 0.00 0.00 0.00 1.94
789 826 0.927767 TGGGGTGGTGGTACTGTTTT 59.072 50.000 0.00 0.00 0.00 2.43
790 827 0.184211 GTGGGGTGGTGGTACTGTTT 59.816 55.000 0.00 0.00 0.00 2.83
791 828 1.712000 GGTGGGGTGGTGGTACTGTT 61.712 60.000 0.00 0.00 0.00 3.16
792 829 2.151388 GGTGGGGTGGTGGTACTGT 61.151 63.158 0.00 0.00 0.00 3.55
862 912 2.987149 AGTGTGAAATGACGAACTAGCG 59.013 45.455 0.00 0.00 37.29 4.26
871 921 1.534729 GGGTGGGAGTGTGAAATGAC 58.465 55.000 0.00 0.00 0.00 3.06
903 953 3.764972 AGTGAGTACTGGAGCCTTTAGAC 59.235 47.826 0.00 0.00 35.34 2.59
970 1031 1.950909 CTCTCGCCCTCTTACCTGTAG 59.049 57.143 0.00 0.00 0.00 2.74
1296 1357 0.890542 GCAACATGAGAGCCACACCA 60.891 55.000 0.00 0.00 0.00 4.17
1299 1360 0.321919 GGAGCAACATGAGAGCCACA 60.322 55.000 0.00 0.00 0.00 4.17
1305 1366 2.433604 GAGGATGAGGAGCAACATGAGA 59.566 50.000 0.00 0.00 0.00 3.27
1312 1373 2.735772 GGGCGAGGATGAGGAGCAA 61.736 63.158 0.00 0.00 0.00 3.91
1450 1514 1.025812 CACCGCACTTTTACACCCAA 58.974 50.000 0.00 0.00 0.00 4.12
1496 1560 2.350772 CCTTAACGCAGAGCAAACCAAG 60.351 50.000 0.00 0.00 0.00 3.61
1553 1625 1.106944 GGAGGAGAGGCGGAAGAGAG 61.107 65.000 0.00 0.00 0.00 3.20
1600 1672 3.059800 GCGGAGTAACAAAAGAGTGTCAC 60.060 47.826 0.00 0.00 0.00 3.67
1602 1674 3.391049 AGCGGAGTAACAAAAGAGTGTC 58.609 45.455 0.00 0.00 0.00 3.67
1605 1677 5.228665 GTTCTAGCGGAGTAACAAAAGAGT 58.771 41.667 0.00 0.00 0.00 3.24
1630 1702 4.123506 GAGTAGAGAAATTACTGCTGCCC 58.876 47.826 0.00 0.00 31.74 5.36
1642 1714 8.548877 ACTGCCATTTTTATAGGAGTAGAGAAA 58.451 33.333 0.00 0.00 0.00 2.52
1643 1715 8.090788 ACTGCCATTTTTATAGGAGTAGAGAA 57.909 34.615 0.00 0.00 0.00 2.87
1674 1746 1.589716 GGAGGCAGGCACAACATCAC 61.590 60.000 0.00 0.00 0.00 3.06
1680 1752 1.851065 TAGCATGGAGGCAGGCACAA 61.851 55.000 0.00 0.00 33.90 3.33
1685 1757 2.708051 CACATATAGCATGGAGGCAGG 58.292 52.381 0.00 0.00 35.83 4.85
1693 1765 4.874396 AGATCCGATTGCACATATAGCATG 59.126 41.667 3.18 0.00 42.33 4.06
1698 1770 5.237815 GTTCCAGATCCGATTGCACATATA 58.762 41.667 0.00 0.00 0.00 0.86
1703 1775 0.652592 CGTTCCAGATCCGATTGCAC 59.347 55.000 0.00 0.00 0.00 4.57
1704 1776 0.249120 ACGTTCCAGATCCGATTGCA 59.751 50.000 0.00 0.00 0.00 4.08
1705 1777 2.218953 TACGTTCCAGATCCGATTGC 57.781 50.000 0.00 0.00 0.00 3.56
1707 1779 2.483188 GCCTTACGTTCCAGATCCGATT 60.483 50.000 0.00 0.00 0.00 3.34
1708 1780 1.068741 GCCTTACGTTCCAGATCCGAT 59.931 52.381 0.00 0.00 0.00 4.18
1711 1783 1.480954 TCAGCCTTACGTTCCAGATCC 59.519 52.381 0.00 0.00 0.00 3.36
1721 1793 2.544685 CACCTCATTCTCAGCCTTACG 58.455 52.381 0.00 0.00 0.00 3.18
1732 1804 3.939592 GCAGTTAAGTACCCACCTCATTC 59.060 47.826 0.00 0.00 0.00 2.67
1734 1806 2.910319 TGCAGTTAAGTACCCACCTCAT 59.090 45.455 0.00 0.00 0.00 2.90
1757 1830 2.036089 GTGCGGGGTGTTTCCATAAAAA 59.964 45.455 0.00 0.00 38.11 1.94
1762 1835 2.282887 GGTGCGGGGTGTTTCCAT 60.283 61.111 0.00 0.00 38.11 3.41
1763 1836 4.939368 CGGTGCGGGGTGTTTCCA 62.939 66.667 0.00 0.00 38.11 3.53
1764 1837 4.629523 TCGGTGCGGGGTGTTTCC 62.630 66.667 0.00 0.00 0.00 3.13
1775 1848 2.552315 TCTCCAAAATTCTGTTCGGTGC 59.448 45.455 0.00 0.00 0.00 5.01
1779 1852 4.211389 CGTGTTCTCCAAAATTCTGTTCG 58.789 43.478 0.00 0.00 0.00 3.95
1780 1853 5.169836 ACGTGTTCTCCAAAATTCTGTTC 57.830 39.130 0.00 0.00 0.00 3.18
1781 1854 4.036380 GGACGTGTTCTCCAAAATTCTGTT 59.964 41.667 0.00 0.00 0.00 3.16
1798 1873 0.316689 GGCGTTCTGTTTTGGACGTG 60.317 55.000 0.00 0.00 0.00 4.49
1801 1876 0.234884 CTCGGCGTTCTGTTTTGGAC 59.765 55.000 6.85 0.00 0.00 4.02
1811 1886 3.876589 TTCCAGGCACTCGGCGTTC 62.877 63.158 6.85 0.00 46.16 3.95
1814 1889 3.883744 AACTTCCAGGCACTCGGCG 62.884 63.158 0.00 0.00 46.16 6.46
1820 1895 2.224314 CGAAGAAGAAACTTCCAGGCAC 59.776 50.000 7.72 0.00 41.99 5.01
1821 1896 2.494059 CGAAGAAGAAACTTCCAGGCA 58.506 47.619 7.72 0.00 41.99 4.75
1822 1897 1.197949 GCGAAGAAGAAACTTCCAGGC 59.802 52.381 7.72 5.53 41.99 4.85
1830 1905 3.000925 TGTTTCACGAGCGAAGAAGAAAC 59.999 43.478 12.99 12.99 42.92 2.78
1836 1911 1.767289 GTCTGTTTCACGAGCGAAGA 58.233 50.000 0.00 0.00 0.00 2.87
1846 1921 2.876550 TCTCGAAGACTCGTCTGTTTCA 59.123 45.455 0.00 0.00 45.62 2.69
1853 1928 1.430228 GGGCTCTCGAAGACTCGTC 59.570 63.158 0.00 0.00 45.62 4.20
1859 1934 2.042843 GGGAGGGGCTCTCGAAGA 60.043 66.667 8.58 0.00 43.34 2.87
1864 1939 1.286257 AGAAATTTGGGAGGGGCTCTC 59.714 52.381 5.60 5.60 41.71 3.20
1868 1943 1.037579 CCGAGAAATTTGGGAGGGGC 61.038 60.000 0.00 0.00 0.00 5.80
1890 1965 1.726533 GAAGAGAGGGTAGCGTCCGG 61.727 65.000 10.81 0.00 0.00 5.14
1894 1969 2.416432 GCGGAAGAGAGGGTAGCGT 61.416 63.158 0.00 0.00 0.00 5.07
1896 1971 2.413765 CGCGGAAGAGAGGGTAGC 59.586 66.667 0.00 0.00 0.00 3.58
1897 1972 3.121019 CCGCGGAAGAGAGGGTAG 58.879 66.667 24.07 0.00 0.00 3.18
1919 1994 1.501741 CCGCAACTCAAATCCGGTG 59.498 57.895 0.00 0.00 34.56 4.94
1920 1995 1.674322 CCCGCAACTCAAATCCGGT 60.674 57.895 0.00 0.00 37.37 5.28
1926 2001 0.035439 GATCCCTCCCGCAACTCAAA 60.035 55.000 0.00 0.00 0.00 2.69
1957 2032 9.668497 GTGAGACCCTAAATACAACTAAAGATT 57.332 33.333 0.00 0.00 0.00 2.40
1959 2034 8.431910 AGTGAGACCCTAAATACAACTAAAGA 57.568 34.615 0.00 0.00 0.00 2.52
1971 2046 9.231297 CAAAATCTGATTTAGTGAGACCCTAAA 57.769 33.333 15.45 0.00 38.40 1.85
1983 2058 9.339492 GAAGCTTGAAGTCAAAATCTGATTTAG 57.661 33.333 15.45 8.14 34.36 1.85
1989 2064 4.321527 GGGGAAGCTTGAAGTCAAAATCTG 60.322 45.833 2.10 0.00 35.15 2.90
1990 2065 3.829026 GGGGAAGCTTGAAGTCAAAATCT 59.171 43.478 2.10 0.00 35.15 2.40
1998 2073 2.168728 GAGATACGGGGAAGCTTGAAGT 59.831 50.000 2.10 0.93 0.00 3.01
2020 2097 1.270518 CCACGGCCAGATCTAGAATGG 60.271 57.143 18.69 18.69 37.15 3.16
2021 2098 1.270518 CCCACGGCCAGATCTAGAATG 60.271 57.143 2.24 0.00 0.00 2.67
2022 2099 1.051812 CCCACGGCCAGATCTAGAAT 58.948 55.000 2.24 0.00 0.00 2.40
2039 2125 2.114838 GCCATGGCTCCATCTCCC 59.885 66.667 29.98 0.00 38.26 4.30
2059 2145 1.005867 ATGGCAGCAAAAGCAACCG 60.006 52.632 0.00 0.00 0.00 4.44
2068 2154 3.503363 CAGAGAAACTTACATGGCAGCAA 59.497 43.478 0.00 0.00 0.00 3.91
2069 2155 3.076621 CAGAGAAACTTACATGGCAGCA 58.923 45.455 0.00 0.00 0.00 4.41
2070 2156 2.159462 GCAGAGAAACTTACATGGCAGC 60.159 50.000 0.00 0.00 0.00 5.25
2071 2157 2.421424 GGCAGAGAAACTTACATGGCAG 59.579 50.000 0.00 0.00 33.80 4.85
2072 2158 2.436417 GGCAGAGAAACTTACATGGCA 58.564 47.619 0.00 0.00 33.80 4.92
2073 2159 1.745653 GGGCAGAGAAACTTACATGGC 59.254 52.381 0.00 0.00 0.00 4.40
2074 2160 3.071874 TGGGCAGAGAAACTTACATGG 57.928 47.619 0.00 0.00 0.00 3.66
2078 2164 2.280628 CGGATGGGCAGAGAAACTTAC 58.719 52.381 0.00 0.00 0.00 2.34
2079 2165 1.906574 ACGGATGGGCAGAGAAACTTA 59.093 47.619 0.00 0.00 0.00 2.24
2084 2172 1.306141 AGGACGGATGGGCAGAGAA 60.306 57.895 0.00 0.00 0.00 2.87
2085 2173 2.060383 CAGGACGGATGGGCAGAGA 61.060 63.158 0.00 0.00 0.00 3.10
2092 2180 4.489771 GGGTGGCAGGACGGATGG 62.490 72.222 0.00 0.00 0.00 3.51
2094 2182 4.741239 AGGGGTGGCAGGACGGAT 62.741 66.667 0.00 0.00 0.00 4.18
2095 2183 4.974438 AAGGGGTGGCAGGACGGA 62.974 66.667 0.00 0.00 0.00 4.69
2112 2200 5.576563 TCCAAAAGGAAGTTCATACCAGA 57.423 39.130 5.01 0.00 0.00 3.86
2121 2209 6.288294 GGCATAGTTTTTCCAAAAGGAAGTT 58.712 36.000 0.00 0.00 0.00 2.66
2123 2211 5.221621 TGGGCATAGTTTTTCCAAAAGGAAG 60.222 40.000 0.00 0.00 0.00 3.46
2172 2261 4.483683 CGTGCGTCGATTGTGCCG 62.484 66.667 0.00 0.00 42.86 5.69
2209 2298 5.683876 ATCATCGAGGGAGAAGAAGAAAA 57.316 39.130 0.00 0.00 0.00 2.29
2214 2303 4.218635 CGGAATATCATCGAGGGAGAAGAA 59.781 45.833 0.00 0.00 0.00 2.52
2215 2304 3.759086 CGGAATATCATCGAGGGAGAAGA 59.241 47.826 0.00 0.00 0.00 2.87
2216 2305 3.674682 GCGGAATATCATCGAGGGAGAAG 60.675 52.174 0.00 0.00 0.00 2.85
2217 2306 2.231478 GCGGAATATCATCGAGGGAGAA 59.769 50.000 0.00 0.00 0.00 2.87
2218 2307 1.819288 GCGGAATATCATCGAGGGAGA 59.181 52.381 0.00 0.00 0.00 3.71
2219 2308 1.546029 TGCGGAATATCATCGAGGGAG 59.454 52.381 0.00 0.00 0.00 4.30
2220 2309 1.627864 TGCGGAATATCATCGAGGGA 58.372 50.000 0.00 0.00 0.00 4.20
2221 2310 2.094026 TGATGCGGAATATCATCGAGGG 60.094 50.000 0.00 0.00 41.35 4.30
2222 2311 3.185330 CTGATGCGGAATATCATCGAGG 58.815 50.000 0.00 0.00 41.35 4.63
2223 2312 2.602211 GCTGATGCGGAATATCATCGAG 59.398 50.000 0.00 0.00 41.35 4.04
2224 2313 2.610433 GCTGATGCGGAATATCATCGA 58.390 47.619 0.00 0.00 41.35 3.59
2225 2314 1.662629 GGCTGATGCGGAATATCATCG 59.337 52.381 0.00 0.00 41.35 3.84
2226 2315 2.012673 GGGCTGATGCGGAATATCATC 58.987 52.381 0.00 0.00 40.82 2.92
2227 2316 1.676916 CGGGCTGATGCGGAATATCAT 60.677 52.381 0.00 0.00 40.82 2.45
2228 2317 0.320683 CGGGCTGATGCGGAATATCA 60.321 55.000 0.00 0.00 40.82 2.15
2229 2318 0.320771 ACGGGCTGATGCGGAATATC 60.321 55.000 0.00 0.00 40.82 1.63
2230 2319 0.108585 AACGGGCTGATGCGGAATAT 59.891 50.000 0.00 0.00 40.82 1.28
2231 2320 0.813610 CAACGGGCTGATGCGGAATA 60.814 55.000 0.00 0.00 40.82 1.75
2232 2321 2.114670 CAACGGGCTGATGCGGAAT 61.115 57.895 0.00 0.00 40.82 3.01
2233 2322 2.745884 CAACGGGCTGATGCGGAA 60.746 61.111 0.00 0.00 40.82 4.30
2234 2323 3.664025 CTCAACGGGCTGATGCGGA 62.664 63.158 0.00 0.00 40.82 5.54
2235 2324 3.197790 CTCAACGGGCTGATGCGG 61.198 66.667 0.00 0.00 40.82 5.69
2236 2325 1.298157 TTTCTCAACGGGCTGATGCG 61.298 55.000 0.00 0.00 40.82 4.73
2237 2326 0.449388 CTTTCTCAACGGGCTGATGC 59.551 55.000 0.00 0.00 38.76 3.91
2238 2327 2.099141 TCTTTCTCAACGGGCTGATG 57.901 50.000 0.00 0.00 0.00 3.07
2239 2328 2.636830 CATCTTTCTCAACGGGCTGAT 58.363 47.619 0.00 0.00 0.00 2.90
2240 2329 1.339055 CCATCTTTCTCAACGGGCTGA 60.339 52.381 0.00 0.00 0.00 4.26
2241 2330 1.089920 CCATCTTTCTCAACGGGCTG 58.910 55.000 0.00 0.00 0.00 4.85
2242 2331 0.984230 TCCATCTTTCTCAACGGGCT 59.016 50.000 0.00 0.00 0.00 5.19
2243 2332 1.672881 CATCCATCTTTCTCAACGGGC 59.327 52.381 0.00 0.00 0.00 6.13
2244 2333 2.679837 CACATCCATCTTTCTCAACGGG 59.320 50.000 0.00 0.00 0.00 5.28
2245 2334 2.096496 GCACATCCATCTTTCTCAACGG 59.904 50.000 0.00 0.00 0.00 4.44
2246 2335 2.096496 GGCACATCCATCTTTCTCAACG 59.904 50.000 0.00 0.00 34.01 4.10
2247 2336 3.084039 TGGCACATCCATCTTTCTCAAC 58.916 45.455 0.00 0.00 40.72 3.18
2248 2337 3.438216 TGGCACATCCATCTTTCTCAA 57.562 42.857 0.00 0.00 40.72 3.02
2266 2355 3.631046 GGAGGGGCGCCTAGATGG 61.631 72.222 28.56 0.00 39.35 3.51
2267 2356 3.631046 GGGAGGGGCGCCTAGATG 61.631 72.222 28.56 0.00 0.00 2.90
2292 2381 4.753662 TGGACCTCCGACCTCCCG 62.754 72.222 0.00 0.00 39.43 5.14
2293 2382 2.760385 CTGGACCTCCGACCTCCC 60.760 72.222 0.00 0.00 39.43 4.30
2294 2383 2.760385 CCTGGACCTCCGACCTCC 60.760 72.222 0.00 0.00 39.43 4.30
2295 2384 3.462678 GCCTGGACCTCCGACCTC 61.463 72.222 0.00 0.00 39.43 3.85
2302 2391 4.021925 AACAGCGGCCTGGACCTC 62.022 66.667 0.00 0.00 43.53 3.85
2303 2392 4.335647 CAACAGCGGCCTGGACCT 62.336 66.667 0.00 0.00 43.53 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.