>input_sequence_81922
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--------------------ATGTCAATGGCGGAGGAGCAGTACTACGGGGGCCCGCGCGGGGCGCCGCACGGGCTGCTG
CTGGCGGTGGTGGTGGGGCTGGTGGTGGCGGGCCCGCTCTTCCTCGGCGACGGAGGCGAGGCGGTTACCGACGCCATCGC
CGAGCTTCTCAGCCCCGTGGGCCTGCTCCTCCTCCCCGTGGGCCTCCTCCTCCTCATCCGCCTCCTCTCCTCCGACCGCG
GCGCCGCGGCGCTCGCCGACGTGTTCGCTTTCGGCGGCTCGCCCGACGCCGTGCACCGCGTCGGGGGTTCCCCCATTGGT
GTGGCTCTCATGTTGCTCCTCATCCTCGCCCTCCTCTACTACCGCTCCGCGCTCTTCGGCGGCGGCGGAGACGACGACGA
GTAG----------------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G156800
CACACGTCTTTTGGCGCTGCCGTTGTAGACGCTCTAAACGCGTAGAAAGGAAGGCCGATGCGTCATTCATGGTAATAAGA
TGTTGGTCTCCTGATGGCCCCCCGCTATACCTGGCCATGGGCCGGGCTTGGGCCGGGCCTAAAAAAGCCCACGGCAGAAA
ACTGAGGCCCAGGCCCTCCCAAGCCCTACCATCAACCTACTTTTCAAGCCCAAGACCGGCCCATCTGGCGAAAAGCCCTG
AAAAGCCCTTCGGGCTTAGGGCCATGGGTCGGGCCTCTTTCTTAAAATGCCAATATGACAAGCCCAAGCCCGTCCAGGCC
CTGCTGGTGGGCTCAAAACTCAGGCCCAAGCCCGGCCCACAGGCAAGCCCGTCGGGCCTAGGCCCTGGATTTTAGGGCCG
GCCCGGCCGCCCGTCGGGCCTAGGCCTTGGATTTTAGGGCCGGCCCTAGGTGGGCCGACAGGGCCGGGCCGGAGATGGCC
AGGACTGACCCCGGCCCACGCGTCATTGCTGTTTCATACTCGTA----ATCTACATGAATCTTCTGCGTTAGCCTGAGAA
CATAATCATCACGACTATCCCGTGATCAAACGCATATCACCGGTTTTTTTTTCTCAAAAAGAAAAAACCCTCCCCGTTTT
GCTAAGAACGCTC-------------------------------TCCTGATCCTACCGACCCCACCAGTCCTGAGCACGC
AGGGCGTGCCACTGTGGGCGGCTCCACCCTAATAAAGCCCACCC-CCCGTGGAGCCCACATTCAGTGGCCTCGCGTTACC
AGTACCAACACCTCAAAAAAAAAAAAAAACAGTACCACCACCCCACCGCTTTCCTTCATGTGATC----------CACCC
CTCCCCGTCACATGCCTATCTCCGCTA---CCGCTAGTTCGTCATTTCACACTCCCACCCCTGGCCCTCGCTGTCTAAAG
GCTCCAGTACTCACT-----CTACCCACACCCGTCACCACAGCCTCGCACAATTATCGCCC------CAGCTACAGGTAA
GAGGGCGAGAGAGCAAGGCGATGTCAATGGCGGAGGAGCAGTACTACGGGGGCCCGCGCGGGGCGCCGCACGGGCTGCTG
CTGGCGGTGGTGGTGGGGCTGGTGGTGGCGGGCCCGCTCTTCCTCGGCGACGGAGGCGAGGCGGTTACCGACGCCATCGC
CGAGCTTCTCAGCCCCGTGGGCCTGCTCCTCCTCCCCGTGGGCCTCCTCCTCCTCATCCGCCTCCTCTCCTCCGACCGCG
GCGCCGCGGCGCTCGCCGACGTGTTCGCTTTCGGCGGCTCGCCCGACGCCGTGCACCGCGTCGGGGGTTCCCCCATTGGT
GTGGCTCTCATGTTGCTCCTCATCCTCGCCCTCCTCTACTACCGCTCCGCGCTCTTCGGCGGCGGCGGAGACGACGACGA
GTAGGCGCCTGCCAGTAGGTAGTTCC---CTGATCTCGGGGTTGTTTTGCTAGTTTCCGTTTCATGGCTGGGCTTGGGTG
TAAAAGTGCGGTGTAAATTAACTGGTAGCTACTCGCCGTCTTGGTTTGCTCTGCGTTAAGG--------CTGAAGGTTCT
GTGCTGCATGGGTCCATGTGCTTGCTCTCTTCCGCCTCTCCTCCTCGTCGCCTCGTCTCGTCGGTGGTGTCGTGACACTC
TTTTGTTACTCCGCTAGAACCGGGCAGCAGTAATTTCTCTACTCCTATAAAAATGGCAGTTGGTGGTGATGTTGTGCCTG
CCTCCATGCTATATGTGCAATCGGATCTGGAACGTAAGGCTGAGAATGAGGTGGGTACTTAACT-GCATTTTTTATGGAA
ACACCCCGCACCGA--ACAGAATTTTGGAGAACACGTCCAAAACAGAACGCCGAGTGCCTGGAAGTTTCTTCTTCGCTCG
TGAAACAGACGAGTCTTCGAGAGCCCCTCCCAAATTTCTCGGCGCCGGACGCTACCCTCTCTTCCGCGGCGACCACCGGA
TTTGAGTTGCGGGAGGGATCCTCCTCTTGAAAATCTTTAGTTGTATTTAGGGTCTCACTAAATCAGATTTTGACTTCAAG
CTT--CCCCGTATCTCCCATTCTAGATCT---------GGCCGTGGGAGATGGAGCCATGGCAGCGGTTGCTTTTGCTGC
CATGTAA--GTTTCTCTGCCCATCCGTCCTGCCACCCCTTCTGGTATGAACTTCCTTTTGGAAAAACTAT-GCCCAAAAA
AATGGGATGAGCCCAACTCCCGGCACAATCGACGCACGCGCACGATTGAGCGCGACCTTTTCTTCTTCTCCCTCGATGAT
ATTCCGCATCAGCCCGTTGAGAAAGATGGATGTGCCATCTAGGCGCCCCTCCCGGCCACCCGGGAGGTCGGAGGTCCAGG
CCGCTGTTGCCGTCGGGCTGCGGGCGTGGCGCTCCACGCTGCTGTCCGCTGGCGCGGTGTGCTGAATGCTGC
>chr4D_33
--------------------------------TCTAAACGCGTAGAAAGGGAGGCCGATGCGTCATTCATGGTAATAAGA
TGTTGGTCTCCTGATGGT--------------------------------------------------------------
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--------CCCCGGCCCACGCGTCATTGCTGTTTCATACTACTCGTACATCTACATGCATCTTCTGCGTTACTCCGAGAA
CATAATCACCACGACTATCCCGTGATCAAACCAAACGCATATCA------------------------CCTCTCCCTTTT
ACTAAGAACGCTGTCCTGATCCGATGATCAAAAAAAAAACGCTGTCCTGATCCTGCCGACCCCACCAGCCCTGAGCACGC
AGGTCGTGCCACTGTGGGCGGCTCCACCCTAATAAAGCCCACCCCCCCGTGGAGCCCACATTCAGTGGCCTTGCGT----
-------------------------------------CCACCCCACCGCTTTCCTTCATGTGAG-----------CACCC
CTCCCCGTCACATGCCTATCTCCGCTAGCGCTGCTAGTTCATCATTTCACACTCCCACCCCTGGCCCTCGCTCTCTAAAG
GCTCCCGTACTCACTGGACTCTACCCACACCCGTCACCACAGCCTCGCACAATTATCGCCCCAGGTACAGGTACAGGTAA
GAGGGCGAGAGAGCAAGGCGATGTCAATGGCGGAGGAGCAGTACTACGGGGGCCCGCGCGGGGCGCCGCACGGGCTGCTG
CTGGCGGTGGTGGTGGGGCTGGTGGTGGCGGGCCCGCTCTTCCTGGGCGACGGCGGCGAGGCGGTCACCGACGCCATCGC
CGAGCTGCTCAGCCCCGTGGGCCTGCTCCTCCTCCCCGTGGGCCTGCTCCTCCTCATCCGCCTCCTCTCCTCCGACCGCG
GCGCCGCGGCGCTCGCCGACGTGTTCGCCTTCGGCGGCTCGCCCGACGCCGTGCACCGCGTCGGGGGCTCCCCCATCGGC
GTGGCGCTCATGCTGCTCCTCATCCTCGCCCTCCTCTACTACCGCTCCGCGCTCTTCGGCGGCGGCGGAGACGACGACGA
GTAGGCGACTGCCAGTAGGTAGTTTCCGTCTGATCTCGGGGTTGTTTTGCTAGTTTCCGTTTCATGGCTGGGCCTGGGTG
TAAAAGAGCGGTGTAAATTAACTGTTAGCTACTCGCCGTGTTGGTTTGCTCTGCGTTAAGG--------CTGAAGGTTCT
GTGCTGCATGGGTCCATGTGCTTGTTCTCTTCCGCCTCTCCTCCTCGTCGCCTCGTCTCGTCGGTGGTGTCCTCACCCTC
TTTTGTTACTCCGCTAGAACCAGGCCTCAGTAA-----------------------------------------------
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>chr4A_794
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-----------------------------CAGTGCCACCACCCCACCGCTTTCCTTCATGTGATCCACCCCGCCCCACCC
CTCCCCATCACATGCCTATCTCCGCTA---CTGCTAGTTCATCATTTCACACTCCCACCCCTG-CCCTCACTCTCTAAAG
GCTCGACTACTCACT-----CTGCCCACACCCGTCACCGCAGCCTCGCAAAATTATCGCCC------CAGGTACAGGTAA
GAGGGCGAGAGAG-AAGGCGATGTCAATGGCGGAGGAGCAGTACTACGGGGGCCCGCGCGGGGCGCCGCACGGGCTGCTG
CTGGCGGTGGTGGCGGGGCTGGTGGTGGCGGGCCCGCTCTTCCTGGGCGACGGCGGCGAGGCGGTCACCGACGCCATCGC
CGAGCTGCTCAGCCCCGTGGGCCTGCTCCTCCTCCCCGTGGGCCTCCTCCTCCTCATCCGCCTTCTCTCCTCCGACCGCG
GCGCCGCGGCGTTCGCCGACGTGTTCGCCTTCGGCGGCTCGCCCGACGCCGTGCACCGCGTCGGGGGCTCCCCCATCGGC
GTGGCGCTCATGCTGCTTCTCATCCTCGCCCTCCTCTACTACCGCTCCGCGCTCTTCGGCGGCGGCGGAGACGACGACGA
GTAGGCGCCTGCCAGTAGGTGGGTAGAGTCTGATCTCGGGGTTGTTTTGGCAGTTTCCGTTTGATGGCTGGGCCTGGGTG
TAAAAGTGCGGTGTAAATTAACTGGTAGCTACTCGCCGTGTTGGTTTGCTCTGCGTTAAGGGCTTAAGGCTGAAGGCTCT
GTGCTGCATGGGTCCATGTGCTT---------------------------------------------------------
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>chr4B_1645
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-----------------------------------TCTCTACTCCTATAAAAATGACAGTTTATGATGATGGTGTGTCTG
CCTCTATGCCATATTGACCGTCCAATCTGGAATGTAAGGCTGAAACTGAGGCGGGTAGTCCCCGAGCACATTTTGCAGAA
ACACCCCACGCATCGGACA-AAATTTGGAGAAGACACCCAAAACACAAAGCCGATACTTTGGAAATTTCTGCTTCTCTCG
CGAAACAAACGAGCCTTCAAGAACCACTCCCAAATTCCTCGTCGTCGGCCCTTCCCATCTCATCCACGGCGACTGCCGGA
GTTGAGTTGCGAGAGGGATCCTCCTCTTCTATACG--TAGTTGTAGTTAGGGTCTCAGTAAATTGGATTTTGGCTTCAAG
CTTTCCCCCGTATCTCTGCTTCTAGATCTCACCGCGCAGGCCGCCGGACATGGAGCCATGGCGGTGGTTGCTTGCTGCCA
CATCCAAGTGTCCCTCTGCTCTCCCGTCCTGCCACCCCTCCTTGTATGGATTTCCTTTTGGAAACACTACAGCCCAGAAA
AG-GGGACGAGCCCAACTCCTGGCACAATCGACGCACGCGCACGATTGAGCGCAACCGTTTC------------------
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>chr1A_1645
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-----------------------------------TCTATACTCCTATAAAAATGGCAATTGGTGATGATGGTGTGTCTG
CCTCTGTGCCATATTGACCGTTCGATCTGGAATGTAAGGCTGAAACTGAGGTGGGTAGTTCCGGAGCACATTTTGCATAA
ACACCCCACACATTCGACAGAATTTTGGAGAAGACATCCGAAACACAAAGCCGATACCCTGGAAATTTCTCCTTCTCTCG
CCAAACAAACGAGCCTTCTAGAACCCCTCCCAAATTCCTCGTCGTCGGCCCTTCTCCTCTCATCCGCGGCAACTGCCAGA
GTTGAGTTGCGCGAGGGATCCTACTCTTCTATACG--TAGTTGTAGTTAGGGTCTCAGTAAATTGAATTTTGGCTTCAAG
CTTTCGTCCGTATCTCTGCTTCTAGAT-------------CCGTCGAAGATGGAGCCATGGCGGTGGTTGCTTGCTACCA
CATCCAAGTGTCCCTTTGCTCTCTCGTCCTACCACCCCTCTTGGTATGGATTTCCTTTTGGAAACACTAT-GCCCAAAAA
AG-GGGACGATCCCAACTCCTGGCACAATCGACGCACGCGCACGATTGAGCGCGACCGTTTC------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-----------------------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--------------------------------SS-S-------------S-------------SS-S-----
--------S----------------------SS-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S----
S-----------S-----------------------------------------S-------------S-----------
---S-------------------------------------------------------------------S----SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------------------------------------------
-------------------------------S--------S-------------------------------S-------
----------------------------------------------------------------------S---------
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--------------------------------------------S--------S-----------S--------------
------S-------------------------------------------------------------------------
----------------------------S--------------------------------------S--------S--S
-----S------S-------------------------------------------------------------------
------------------------S------------------------------------------------S------
---------------------------------------S----------------------------------------
------------------------S----------------------------------------------S-S--S---
---------------------S---SS------SS------------------------------S-----S----S---
----S----S----SSS-SS--S---------S----------S-S-----------S--SS-S----SS----SSS---
-------S---SSS------------------S--S---------S--S-----SSS-------S-----S----S----
S------S-----S----S---S-------------S----S--S---S-SS-S-------S-----------SS-----
S----------S----------------SS-S-SSSS--------S-----------S-----SS-------S-------
----------------SSS-------------------------S-----------------S-S--------SSSSSSS
---SS------SS------S-SS----------------S--------S-S-------------S---------------
-SS----S------------S------------------------------------S----SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_248
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--------------------------------------------------------------------CGAAAAGCCCTG
AAAAGCCC------------------------------------------------------------------------
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>reverse_2001
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TTTGAGTTGCGGGAGGGATC------------------------------------------------------------
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