Multiple sequence alignment - TraesCS4B01G143100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G143100 chr4B 100.000 2522 0 0 1 2522 189152833 189150312 0.000000e+00 4658
1 TraesCS4B01G143100 chr4B 99.070 215 2 0 1752 1966 189150872 189150658 1.090000e-103 387
2 TraesCS4B01G143100 chr4B 99.070 215 2 0 1962 2176 189151082 189150868 1.090000e-103 387
3 TraesCS4B01G143100 chr4A 96.851 1937 56 3 1 1933 444863194 444865129 0.000000e+00 3234
4 TraesCS4B01G143100 chr4A 93.478 184 10 1 1962 2143 444864946 444865129 3.200000e-69 272
5 TraesCS4B01G143100 chr4A 95.489 133 4 2 2158 2288 444865115 444865247 7.070000e-51 211
6 TraesCS4B01G143100 chr4D 96.310 1951 53 6 1 1939 125232058 125230115 0.000000e+00 3186
7 TraesCS4B01G143100 chr4D 92.063 189 14 1 1962 2149 125230303 125230115 5.350000e-67 265
8 TraesCS4B01G143100 chr4D 96.040 101 3 1 2189 2288 125230120 125230020 2.010000e-36 163
9 TraesCS4B01G143100 chr7A 99.160 238 2 0 2285 2522 708307707 708307470 1.790000e-116 429
10 TraesCS4B01G143100 chr5B 99.163 239 1 1 2285 2522 158882503 158882741 1.790000e-116 429
11 TraesCS4B01G143100 chr5B 73.559 295 63 11 247 529 112586979 112586688 5.740000e-17 99
12 TraesCS4B01G143100 chr1A 99.574 235 1 0 2288 2522 568719510 568719276 1.790000e-116 429
13 TraesCS4B01G143100 chr1A 97.942 243 4 1 2281 2522 521304462 521304704 1.080000e-113 420
14 TraesCS4B01G143100 chr5A 99.573 234 1 0 2289 2522 521663632 521663865 6.450000e-116 427
15 TraesCS4B01G143100 chr6B 98.739 238 3 0 2285 2522 385531757 385531520 8.340000e-115 424
16 TraesCS4B01G143100 chr3B 98.745 239 2 1 2285 2522 193978056 193977818 8.340000e-115 424
17 TraesCS4B01G143100 chr2A 97.942 243 5 0 2280 2522 306618021 306618263 3.000000e-114 422
18 TraesCS4B01G143100 chr6A 97.551 245 6 0 2278 2522 90756178 90756422 1.080000e-113 420
19 TraesCS4B01G143100 chr6D 74.237 295 61 11 247 529 276903075 276903366 2.650000e-20 110
20 TraesCS4B01G143100 chr5D 74.074 297 58 14 247 529 103654432 103654141 1.230000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G143100 chr4B 189150312 189152833 2521 True 1810.666667 4658 99.380000 1 2522 3 chr4B.!!$R1 2521
1 TraesCS4B01G143100 chr4A 444863194 444865247 2053 False 1239.000000 3234 95.272667 1 2288 3 chr4A.!!$F1 2287
2 TraesCS4B01G143100 chr4D 125230020 125232058 2038 True 1204.666667 3186 94.804333 1 2288 3 chr4D.!!$R1 2287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.029567 CAGCGATGACTACGACTCCC 59.97 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 1956 1.20277 AGGCTATTATGTTCCACCGGC 60.203 52.381 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.346365 GTCACCCTGTCGTTCCCC 59.654 66.667 0.00 0.00 0.00 4.81
141 142 0.029567 CAGCGATGACTACGACTCCC 59.970 60.000 0.00 0.00 0.00 4.30
371 372 2.207924 GGACCTGGACGTGGACTGT 61.208 63.158 0.00 0.00 0.00 3.55
530 531 0.173481 TCAAGATCGTCTTCTGCCCG 59.827 55.000 0.00 0.00 33.78 6.13
583 589 0.250814 TAGGCTAGCTAGACCGGCTC 60.251 60.000 23.47 3.37 40.74 4.70
604 610 3.188786 GTCACTCACGATGCCGGC 61.189 66.667 22.73 22.73 40.78 6.13
711 717 1.699083 TGATCTTGAGCACTTGACCCA 59.301 47.619 0.00 0.00 0.00 4.51
787 793 3.447229 AGCAGGCTTAGTTTGTGTTGTTT 59.553 39.130 0.00 0.00 0.00 2.83
915 924 1.480789 TGTCCGGTAGCTTGCATCTA 58.519 50.000 0.00 0.00 0.00 1.98
934 943 5.777850 TCTATCGACCGATTAATGTTCCA 57.222 39.130 10.31 0.00 36.17 3.53
1028 1040 2.350522 GTTCAACATGAGCTCGTCCAT 58.649 47.619 5.16 0.00 0.00 3.41
1569 1581 3.055530 AGGAAGAAGCAGAGTGTATGTGG 60.056 47.826 0.00 0.00 0.00 4.17
1591 1603 6.149474 GTGGATGTACTACATTGCTCTGTTTT 59.851 38.462 3.14 0.00 39.27 2.43
1612 1624 7.094377 TGTTTTGCTTCTAAATTCTAATCCGCT 60.094 33.333 0.00 0.00 0.00 5.52
1814 1828 2.648059 CCCCCATGTGAACTCTCATTC 58.352 52.381 0.00 0.00 33.05 2.67
1824 1838 6.279123 TGTGAACTCTCATTCTATGCTCATC 58.721 40.000 0.00 0.00 33.05 2.92
1851 1865 7.342026 TGATAGTAGTCACTTGGCTGATAGAAA 59.658 37.037 0.00 0.00 36.14 2.52
1852 1866 6.360370 AGTAGTCACTTGGCTGATAGAAAA 57.640 37.500 0.00 0.00 0.00 2.29
1959 1973 4.974368 TTTTGCCGGTGGAACATAATAG 57.026 40.909 1.90 0.00 44.52 1.73
1960 1974 1.961793 TGCCGGTGGAACATAATAGC 58.038 50.000 1.90 0.00 44.52 2.97
1961 1975 1.235724 GCCGGTGGAACATAATAGCC 58.764 55.000 1.90 0.00 44.52 3.93
1962 1976 1.202770 GCCGGTGGAACATAATAGCCT 60.203 52.381 1.90 0.00 44.52 4.58
1963 1977 2.494059 CCGGTGGAACATAATAGCCTG 58.506 52.381 0.00 0.00 44.52 4.85
1964 1978 2.104111 CCGGTGGAACATAATAGCCTGA 59.896 50.000 0.00 0.00 44.52 3.86
1965 1979 3.244561 CCGGTGGAACATAATAGCCTGAT 60.245 47.826 0.00 0.00 44.52 2.90
1966 1980 4.020573 CCGGTGGAACATAATAGCCTGATA 60.021 45.833 0.00 0.00 44.52 2.15
1967 1981 5.338381 CCGGTGGAACATAATAGCCTGATAT 60.338 44.000 0.00 0.00 44.52 1.63
1968 1982 6.173339 CGGTGGAACATAATAGCCTGATATT 58.827 40.000 0.00 0.00 44.52 1.28
1969 1983 6.655003 CGGTGGAACATAATAGCCTGATATTT 59.345 38.462 0.00 0.00 44.52 1.40
1970 1984 7.361201 CGGTGGAACATAATAGCCTGATATTTG 60.361 40.741 0.00 0.00 44.52 2.32
1971 1985 7.665559 GGTGGAACATAATAGCCTGATATTTGA 59.334 37.037 0.00 0.00 44.52 2.69
1972 1986 8.725148 GTGGAACATAATAGCCTGATATTTGAG 58.275 37.037 0.00 0.00 44.52 3.02
1973 1987 8.659527 TGGAACATAATAGCCTGATATTTGAGA 58.340 33.333 0.00 0.00 0.00 3.27
1974 1988 9.507329 GGAACATAATAGCCTGATATTTGAGAA 57.493 33.333 0.00 0.00 0.00 2.87
1983 1997 8.674263 AGCCTGATATTTGAGAAGTTAATCTG 57.326 34.615 0.00 0.00 0.00 2.90
1984 1998 7.228308 AGCCTGATATTTGAGAAGTTAATCTGC 59.772 37.037 0.00 0.00 0.00 4.26
1985 1999 7.012704 GCCTGATATTTGAGAAGTTAATCTGCA 59.987 37.037 0.00 0.00 0.00 4.41
1986 2000 9.064706 CCTGATATTTGAGAAGTTAATCTGCAT 57.935 33.333 0.00 0.00 0.00 3.96
1992 2006 8.442632 TTTGAGAAGTTAATCTGCATATGAGG 57.557 34.615 6.97 0.00 0.00 3.86
1993 2007 7.129457 TGAGAAGTTAATCTGCATATGAGGT 57.871 36.000 6.97 0.00 0.00 3.85
1994 2008 8.250143 TGAGAAGTTAATCTGCATATGAGGTA 57.750 34.615 6.97 0.00 0.00 3.08
1995 2009 8.874156 TGAGAAGTTAATCTGCATATGAGGTAT 58.126 33.333 6.97 0.00 0.00 2.73
1996 2010 9.717942 GAGAAGTTAATCTGCATATGAGGTATT 57.282 33.333 6.97 2.97 0.00 1.89
1997 2011 9.717942 AGAAGTTAATCTGCATATGAGGTATTC 57.282 33.333 6.97 0.00 0.00 1.75
1998 2012 9.717942 GAAGTTAATCTGCATATGAGGTATTCT 57.282 33.333 6.97 0.00 0.00 2.40
2000 2014 9.717942 AGTTAATCTGCATATGAGGTATTCTTC 57.282 33.333 6.97 0.00 0.00 2.87
2001 2015 9.494271 GTTAATCTGCATATGAGGTATTCTTCA 57.506 33.333 6.97 0.00 34.32 3.02
2003 2017 8.789825 AATCTGCATATGAGGTATTCTTCATC 57.210 34.615 6.97 0.00 40.17 2.92
2004 2018 6.705302 TCTGCATATGAGGTATTCTTCATCC 58.295 40.000 6.97 0.00 40.17 3.51
2005 2019 5.809001 TGCATATGAGGTATTCTTCATCCC 58.191 41.667 6.97 0.00 40.17 3.85
2006 2020 5.189180 GCATATGAGGTATTCTTCATCCCC 58.811 45.833 6.97 0.00 40.17 4.81
2007 2021 5.749462 CATATGAGGTATTCTTCATCCCCC 58.251 45.833 0.00 0.00 40.17 5.40
2023 2037 2.814805 CCCCCATGTGAACTCTCATT 57.185 50.000 0.00 0.00 33.05 2.57
2024 2038 2.648059 CCCCCATGTGAACTCTCATTC 58.352 52.381 0.00 0.00 33.05 2.67
2025 2039 2.240667 CCCCCATGTGAACTCTCATTCT 59.759 50.000 0.00 0.00 33.05 2.40
2026 2040 3.455910 CCCCCATGTGAACTCTCATTCTA 59.544 47.826 0.00 0.00 33.05 2.10
2027 2041 4.103785 CCCCCATGTGAACTCTCATTCTAT 59.896 45.833 0.00 0.00 33.05 1.98
2028 2042 5.061853 CCCCATGTGAACTCTCATTCTATG 58.938 45.833 0.00 0.00 33.05 2.23
2029 2043 4.514441 CCCATGTGAACTCTCATTCTATGC 59.486 45.833 0.00 0.00 33.05 3.14
2030 2044 5.366460 CCATGTGAACTCTCATTCTATGCT 58.634 41.667 0.00 0.00 33.05 3.79
2031 2045 5.466058 CCATGTGAACTCTCATTCTATGCTC 59.534 44.000 0.00 0.00 33.05 4.26
2032 2046 5.665916 TGTGAACTCTCATTCTATGCTCA 57.334 39.130 0.00 0.00 33.05 4.26
2033 2047 6.231258 TGTGAACTCTCATTCTATGCTCAT 57.769 37.500 0.00 0.00 33.05 2.90
2034 2048 6.279123 TGTGAACTCTCATTCTATGCTCATC 58.721 40.000 0.00 0.00 33.05 2.92
2035 2049 6.097981 TGTGAACTCTCATTCTATGCTCATCT 59.902 38.462 0.00 0.00 33.05 2.90
2036 2050 6.421501 GTGAACTCTCATTCTATGCTCATCTG 59.578 42.308 0.00 0.00 33.05 2.90
2037 2051 6.323225 TGAACTCTCATTCTATGCTCATCTGA 59.677 38.462 0.00 0.00 0.00 3.27
2038 2052 6.921486 ACTCTCATTCTATGCTCATCTGAT 57.079 37.500 0.00 0.00 0.00 2.90
2039 2053 8.419922 AACTCTCATTCTATGCTCATCTGATA 57.580 34.615 0.00 0.00 0.00 2.15
2040 2054 8.058667 ACTCTCATTCTATGCTCATCTGATAG 57.941 38.462 0.00 0.00 0.00 2.08
2041 2055 7.670979 ACTCTCATTCTATGCTCATCTGATAGT 59.329 37.037 0.00 0.00 0.00 2.12
2042 2056 9.176460 CTCTCATTCTATGCTCATCTGATAGTA 57.824 37.037 0.00 0.00 0.00 1.82
2043 2057 9.176460 TCTCATTCTATGCTCATCTGATAGTAG 57.824 37.037 0.00 0.00 0.00 2.57
2044 2058 8.876303 TCATTCTATGCTCATCTGATAGTAGT 57.124 34.615 0.00 0.00 0.00 2.73
2045 2059 8.955388 TCATTCTATGCTCATCTGATAGTAGTC 58.045 37.037 0.00 0.00 0.00 2.59
2046 2060 8.738106 CATTCTATGCTCATCTGATAGTAGTCA 58.262 37.037 0.00 0.00 0.00 3.41
2047 2061 7.680442 TCTATGCTCATCTGATAGTAGTCAC 57.320 40.000 0.00 0.00 0.00 3.67
2048 2062 7.457561 TCTATGCTCATCTGATAGTAGTCACT 58.542 38.462 0.00 0.00 38.91 3.41
2049 2063 6.975196 ATGCTCATCTGATAGTAGTCACTT 57.025 37.500 0.00 0.00 36.14 3.16
2050 2064 6.141560 TGCTCATCTGATAGTAGTCACTTG 57.858 41.667 0.00 0.00 36.14 3.16
2051 2065 5.068329 TGCTCATCTGATAGTAGTCACTTGG 59.932 44.000 0.00 0.00 36.14 3.61
2052 2066 5.521906 TCATCTGATAGTAGTCACTTGGC 57.478 43.478 0.00 0.00 36.14 4.52
2053 2067 5.204292 TCATCTGATAGTAGTCACTTGGCT 58.796 41.667 0.00 0.00 36.14 4.75
2054 2068 4.991153 TCTGATAGTAGTCACTTGGCTG 57.009 45.455 0.00 0.00 36.14 4.85
2055 2069 4.600062 TCTGATAGTAGTCACTTGGCTGA 58.400 43.478 0.00 0.00 36.14 4.26
2056 2070 5.204292 TCTGATAGTAGTCACTTGGCTGAT 58.796 41.667 0.00 0.00 36.14 2.90
2057 2071 6.365520 TCTGATAGTAGTCACTTGGCTGATA 58.634 40.000 0.00 0.00 36.14 2.15
2058 2072 6.488344 TCTGATAGTAGTCACTTGGCTGATAG 59.512 42.308 0.00 0.00 36.14 2.08
2059 2073 6.365520 TGATAGTAGTCACTTGGCTGATAGA 58.634 40.000 0.00 0.00 36.14 1.98
2060 2074 6.833933 TGATAGTAGTCACTTGGCTGATAGAA 59.166 38.462 0.00 0.00 36.14 2.10
2061 2075 7.342026 TGATAGTAGTCACTTGGCTGATAGAAA 59.658 37.037 0.00 0.00 36.14 2.52
2062 2076 6.360370 AGTAGTCACTTGGCTGATAGAAAA 57.640 37.500 0.00 0.00 0.00 2.29
2063 2077 6.951971 AGTAGTCACTTGGCTGATAGAAAAT 58.048 36.000 0.00 0.00 0.00 1.82
2064 2078 7.044798 AGTAGTCACTTGGCTGATAGAAAATC 58.955 38.462 0.00 0.00 0.00 2.17
2065 2079 5.809001 AGTCACTTGGCTGATAGAAAATCA 58.191 37.500 0.00 0.00 0.00 2.57
2066 2080 5.879223 AGTCACTTGGCTGATAGAAAATCAG 59.121 40.000 10.04 10.04 46.12 2.90
2084 2098 2.745821 TCAGCTCATGATGTTGACAAGC 59.254 45.455 0.00 0.00 31.12 4.01
2085 2099 2.747989 CAGCTCATGATGTTGACAAGCT 59.252 45.455 0.00 0.00 0.00 3.74
2086 2100 3.190744 CAGCTCATGATGTTGACAAGCTT 59.809 43.478 0.00 0.00 0.00 3.74
2087 2101 4.393990 CAGCTCATGATGTTGACAAGCTTA 59.606 41.667 0.00 0.00 0.00 3.09
2088 2102 5.066117 CAGCTCATGATGTTGACAAGCTTAT 59.934 40.000 0.00 0.00 0.00 1.73
2089 2103 5.651139 AGCTCATGATGTTGACAAGCTTATT 59.349 36.000 0.00 0.00 0.00 1.40
2090 2104 6.825213 AGCTCATGATGTTGACAAGCTTATTA 59.175 34.615 0.00 0.00 0.00 0.98
2091 2105 7.012138 AGCTCATGATGTTGACAAGCTTATTAG 59.988 37.037 0.00 0.00 0.00 1.73
2092 2106 7.011763 GCTCATGATGTTGACAAGCTTATTAGA 59.988 37.037 0.00 0.00 0.00 2.10
2093 2107 8.429493 TCATGATGTTGACAAGCTTATTAGAG 57.571 34.615 0.00 0.00 0.00 2.43
2094 2108 8.260114 TCATGATGTTGACAAGCTTATTAGAGA 58.740 33.333 0.00 0.00 0.00 3.10
2095 2109 7.834068 TGATGTTGACAAGCTTATTAGAGAC 57.166 36.000 0.00 0.00 0.00 3.36
2096 2110 7.386059 TGATGTTGACAAGCTTATTAGAGACA 58.614 34.615 0.00 0.00 0.00 3.41
2097 2111 7.877612 TGATGTTGACAAGCTTATTAGAGACAA 59.122 33.333 0.00 0.00 0.00 3.18
2098 2112 8.798859 ATGTTGACAAGCTTATTAGAGACAAT 57.201 30.769 0.00 0.00 0.00 2.71
2099 2113 8.032952 TGTTGACAAGCTTATTAGAGACAATG 57.967 34.615 0.00 0.00 0.00 2.82
2100 2114 7.119699 TGTTGACAAGCTTATTAGAGACAATGG 59.880 37.037 0.00 0.00 0.00 3.16
2101 2115 6.946340 TGACAAGCTTATTAGAGACAATGGA 58.054 36.000 0.00 0.00 0.00 3.41
2102 2116 7.394016 TGACAAGCTTATTAGAGACAATGGAA 58.606 34.615 0.00 0.00 0.00 3.53
2103 2117 7.550551 TGACAAGCTTATTAGAGACAATGGAAG 59.449 37.037 0.00 0.00 0.00 3.46
2104 2118 7.624549 ACAAGCTTATTAGAGACAATGGAAGA 58.375 34.615 0.00 0.00 0.00 2.87
2105 2119 7.768120 ACAAGCTTATTAGAGACAATGGAAGAG 59.232 37.037 0.00 0.00 0.00 2.85
2106 2120 7.430760 AGCTTATTAGAGACAATGGAAGAGT 57.569 36.000 0.00 0.00 0.00 3.24
2107 2121 7.856415 AGCTTATTAGAGACAATGGAAGAGTT 58.144 34.615 0.00 0.00 0.00 3.01
2108 2122 8.982723 AGCTTATTAGAGACAATGGAAGAGTTA 58.017 33.333 0.00 0.00 0.00 2.24
2109 2123 9.771534 GCTTATTAGAGACAATGGAAGAGTTAT 57.228 33.333 0.00 0.00 0.00 1.89
2116 2130 7.550906 AGAGACAATGGAAGAGTTATGTAAAGC 59.449 37.037 0.00 0.00 0.00 3.51
2117 2131 7.398024 AGACAATGGAAGAGTTATGTAAAGCT 58.602 34.615 0.00 0.00 0.00 3.74
2118 2132 7.335422 AGACAATGGAAGAGTTATGTAAAGCTG 59.665 37.037 0.00 0.00 0.00 4.24
2119 2133 6.127897 ACAATGGAAGAGTTATGTAAAGCTGC 60.128 38.462 0.00 0.00 0.00 5.25
2120 2134 4.905429 TGGAAGAGTTATGTAAAGCTGCA 58.095 39.130 1.02 0.00 0.00 4.41
2121 2135 5.500234 TGGAAGAGTTATGTAAAGCTGCAT 58.500 37.500 1.02 0.00 0.00 3.96
2122 2136 5.945784 TGGAAGAGTTATGTAAAGCTGCATT 59.054 36.000 1.02 0.00 0.00 3.56
2123 2137 6.434028 TGGAAGAGTTATGTAAAGCTGCATTT 59.566 34.615 1.02 2.50 0.00 2.32
2124 2138 7.039784 TGGAAGAGTTATGTAAAGCTGCATTTT 60.040 33.333 1.02 0.00 0.00 1.82
2125 2139 7.486232 GGAAGAGTTATGTAAAGCTGCATTTTC 59.514 37.037 1.02 0.00 0.00 2.29
2126 2140 7.693969 AGAGTTATGTAAAGCTGCATTTTCT 57.306 32.000 1.02 3.77 0.00 2.52
2127 2141 8.792830 AGAGTTATGTAAAGCTGCATTTTCTA 57.207 30.769 1.02 0.00 0.00 2.10
2128 2142 9.401058 AGAGTTATGTAAAGCTGCATTTTCTAT 57.599 29.630 1.02 0.00 0.00 1.98
2129 2143 9.443283 GAGTTATGTAAAGCTGCATTTTCTATG 57.557 33.333 1.02 0.00 0.00 2.23
2130 2144 8.408601 AGTTATGTAAAGCTGCATTTTCTATGG 58.591 33.333 1.02 0.00 0.00 2.74
2131 2145 8.405531 GTTATGTAAAGCTGCATTTTCTATGGA 58.594 33.333 1.02 0.00 0.00 3.41
2132 2146 6.832520 TGTAAAGCTGCATTTTCTATGGAA 57.167 33.333 1.02 0.00 0.00 3.53
2133 2147 6.620678 TGTAAAGCTGCATTTTCTATGGAAC 58.379 36.000 1.02 0.00 0.00 3.62
2169 2183 4.974368 TTTTGCCGGTGGAACATAATAG 57.026 40.909 1.90 0.00 44.52 1.73
2170 2184 1.961793 TGCCGGTGGAACATAATAGC 58.038 50.000 1.90 0.00 44.52 2.97
2171 2185 1.235724 GCCGGTGGAACATAATAGCC 58.764 55.000 1.90 0.00 44.52 3.93
2172 2186 1.202770 GCCGGTGGAACATAATAGCCT 60.203 52.381 1.90 0.00 44.52 4.58
2173 2187 2.494059 CCGGTGGAACATAATAGCCTG 58.506 52.381 0.00 0.00 44.52 4.85
2174 2188 2.104111 CCGGTGGAACATAATAGCCTGA 59.896 50.000 0.00 0.00 44.52 3.86
2175 2189 3.244561 CCGGTGGAACATAATAGCCTGAT 60.245 47.826 0.00 0.00 44.52 2.90
2176 2190 3.748048 CGGTGGAACATAATAGCCTGATG 59.252 47.826 0.00 0.00 44.52 3.07
2177 2191 4.074970 GGTGGAACATAATAGCCTGATGG 58.925 47.826 0.00 0.00 44.52 3.51
2202 2216 9.063615 GGTTTCTCATAGAGTTTTACCAGAAAA 57.936 33.333 0.00 0.00 32.06 2.29
2302 2317 9.706846 ATTATTACTTTACGGAAATGTTAACGC 57.293 29.630 0.00 0.00 0.00 4.84
2303 2318 4.408993 ACTTTACGGAAATGTTAACGCC 57.591 40.909 0.00 0.00 0.00 5.68
2304 2319 3.189080 ACTTTACGGAAATGTTAACGCCC 59.811 43.478 0.00 0.00 0.00 6.13
2305 2320 2.469274 TACGGAAATGTTAACGCCCA 57.531 45.000 0.26 0.00 0.00 5.36
2306 2321 0.876399 ACGGAAATGTTAACGCCCAC 59.124 50.000 0.26 0.00 0.00 4.61
2307 2322 0.875728 CGGAAATGTTAACGCCCACA 59.124 50.000 0.26 0.00 0.00 4.17
2308 2323 1.400500 CGGAAATGTTAACGCCCACAC 60.400 52.381 0.26 0.00 0.00 3.82
2309 2324 1.400500 GGAAATGTTAACGCCCACACG 60.400 52.381 0.26 0.00 39.50 4.49
2321 2336 2.892914 CACACGTGTGGGCGTTCA 60.893 61.111 35.65 0.00 43.83 3.18
2322 2337 2.893404 ACACGTGTGGGCGTTCAC 60.893 61.111 22.71 3.83 43.83 3.18
2323 2338 3.645975 CACGTGTGGGCGTTCACC 61.646 66.667 7.58 0.00 43.83 4.02
2324 2339 4.164087 ACGTGTGGGCGTTCACCA 62.164 61.111 7.58 0.00 43.04 4.17
2329 2344 4.308458 TGGGCGTTCACCACTCCG 62.308 66.667 0.00 0.00 29.85 4.63
2330 2345 4.309950 GGGCGTTCACCACTCCGT 62.310 66.667 0.00 0.00 29.85 4.69
2331 2346 2.737376 GGCGTTCACCACTCCGTC 60.737 66.667 0.00 0.00 0.00 4.79
2332 2347 2.737376 GCGTTCACCACTCCGTCC 60.737 66.667 0.00 0.00 0.00 4.79
2333 2348 2.732016 CGTTCACCACTCCGTCCA 59.268 61.111 0.00 0.00 0.00 4.02
2334 2349 1.663702 CGTTCACCACTCCGTCCAC 60.664 63.158 0.00 0.00 0.00 4.02
2335 2350 1.444250 GTTCACCACTCCGTCCACA 59.556 57.895 0.00 0.00 0.00 4.17
2336 2351 0.878961 GTTCACCACTCCGTCCACAC 60.879 60.000 0.00 0.00 0.00 3.82
2337 2352 2.355837 CACCACTCCGTCCACACG 60.356 66.667 0.00 0.00 46.29 4.49
2338 2353 4.295119 ACCACTCCGTCCACACGC 62.295 66.667 0.00 0.00 45.29 5.34
2339 2354 4.293648 CCACTCCGTCCACACGCA 62.294 66.667 0.00 0.00 45.29 5.24
2340 2355 2.279851 CACTCCGTCCACACGCAA 60.280 61.111 0.00 0.00 45.29 4.85
2341 2356 2.029073 ACTCCGTCCACACGCAAG 59.971 61.111 0.00 0.00 45.29 4.01
2342 2357 3.414700 CTCCGTCCACACGCAAGC 61.415 66.667 0.00 0.00 45.29 4.01
2343 2358 4.228567 TCCGTCCACACGCAAGCA 62.229 61.111 0.00 0.00 45.29 3.91
2344 2359 3.049674 CCGTCCACACGCAAGCAT 61.050 61.111 0.00 0.00 45.29 3.79
2345 2360 2.476051 CGTCCACACGCAAGCATC 59.524 61.111 0.00 0.00 39.69 3.91
2346 2361 2.476051 GTCCACACGCAAGCATCG 59.524 61.111 0.00 0.00 45.62 3.84
2347 2362 3.422303 TCCACACGCAAGCATCGC 61.422 61.111 0.00 0.00 45.62 4.58
2348 2363 4.465512 CCACACGCAAGCATCGCC 62.466 66.667 0.00 0.00 45.62 5.54
2349 2364 4.799473 CACACGCAAGCATCGCCG 62.799 66.667 0.00 0.00 45.62 6.46
2351 2366 4.088762 CACGCAAGCATCGCCGTT 62.089 61.111 0.00 0.00 45.62 4.44
2352 2367 4.088762 ACGCAAGCATCGCCGTTG 62.089 61.111 0.00 0.00 45.62 4.10
2353 2368 4.817063 CGCAAGCATCGCCGTTGG 62.817 66.667 0.00 0.00 0.00 3.77
2354 2369 3.737172 GCAAGCATCGCCGTTGGT 61.737 61.111 0.00 0.00 0.00 3.67
2355 2370 2.953821 CAAGCATCGCCGTTGGTT 59.046 55.556 6.77 6.77 35.31 3.67
2356 2371 1.285641 CAAGCATCGCCGTTGGTTT 59.714 52.632 9.65 0.00 32.81 3.27
2357 2372 0.729140 CAAGCATCGCCGTTGGTTTC 60.729 55.000 9.65 0.00 32.81 2.78
2358 2373 2.182614 AAGCATCGCCGTTGGTTTCG 62.183 55.000 6.77 0.00 31.11 3.46
2359 2374 2.961669 GCATCGCCGTTGGTTTCGT 61.962 57.895 0.00 0.00 0.00 3.85
2360 2375 1.572447 CATCGCCGTTGGTTTCGTT 59.428 52.632 0.00 0.00 0.00 3.85
2361 2376 0.040781 CATCGCCGTTGGTTTCGTTT 60.041 50.000 0.00 0.00 0.00 3.60
2362 2377 0.664224 ATCGCCGTTGGTTTCGTTTT 59.336 45.000 0.00 0.00 0.00 2.43
2363 2378 0.248134 TCGCCGTTGGTTTCGTTTTG 60.248 50.000 0.00 0.00 0.00 2.44
2364 2379 1.803286 CGCCGTTGGTTTCGTTTTGC 61.803 55.000 0.00 0.00 0.00 3.68
2365 2380 0.802607 GCCGTTGGTTTCGTTTTGCA 60.803 50.000 0.00 0.00 0.00 4.08
2366 2381 0.917939 CCGTTGGTTTCGTTTTGCAC 59.082 50.000 0.00 0.00 0.00 4.57
2378 2393 2.319472 GTTTTGCACGAATCTTGGAGC 58.681 47.619 0.00 0.00 0.00 4.70
2379 2394 1.603456 TTTGCACGAATCTTGGAGCA 58.397 45.000 0.00 0.00 31.65 4.26
2380 2395 1.603456 TTGCACGAATCTTGGAGCAA 58.397 45.000 5.87 5.87 39.29 3.91
2381 2396 1.603456 TGCACGAATCTTGGAGCAAA 58.397 45.000 0.00 0.00 30.74 3.68
2382 2397 1.952990 TGCACGAATCTTGGAGCAAAA 59.047 42.857 0.00 0.00 30.74 2.44
2383 2398 2.030893 TGCACGAATCTTGGAGCAAAAG 60.031 45.455 0.00 0.00 30.74 2.27
2384 2399 2.669391 GCACGAATCTTGGAGCAAAAGG 60.669 50.000 0.00 0.00 0.00 3.11
2385 2400 2.095059 CACGAATCTTGGAGCAAAAGGG 60.095 50.000 0.00 0.00 0.00 3.95
2386 2401 1.135286 CGAATCTTGGAGCAAAAGGGC 60.135 52.381 0.00 0.00 0.00 5.19
2388 2403 1.553706 ATCTTGGAGCAAAAGGGCTG 58.446 50.000 0.00 0.00 45.99 4.85
2389 2404 0.540365 TCTTGGAGCAAAAGGGCTGG 60.540 55.000 0.00 0.00 45.99 4.85
2390 2405 0.829182 CTTGGAGCAAAAGGGCTGGT 60.829 55.000 0.00 0.00 45.99 4.00
2391 2406 0.398381 TTGGAGCAAAAGGGCTGGTT 60.398 50.000 0.00 0.00 45.99 3.67
2392 2407 0.398381 TGGAGCAAAAGGGCTGGTTT 60.398 50.000 0.00 0.00 45.99 3.27
2393 2408 0.758734 GGAGCAAAAGGGCTGGTTTT 59.241 50.000 0.00 0.00 45.99 2.43
2394 2409 1.270305 GGAGCAAAAGGGCTGGTTTTC 60.270 52.381 0.00 0.00 45.99 2.29
2395 2410 0.389025 AGCAAAAGGGCTGGTTTTCG 59.611 50.000 0.00 0.00 43.89 3.46
2396 2411 0.599991 GCAAAAGGGCTGGTTTTCGG 60.600 55.000 0.00 0.00 0.00 4.30
2397 2412 0.599991 CAAAAGGGCTGGTTTTCGGC 60.600 55.000 0.00 0.00 46.78 5.54
2402 2417 4.700365 GCTGGTTTTCGGCGCCAC 62.700 66.667 28.98 17.05 38.09 5.01
2403 2418 4.383602 CTGGTTTTCGGCGCCACG 62.384 66.667 28.98 14.07 0.00 4.94
2405 2420 3.956317 GGTTTTCGGCGCCACGTT 61.956 61.111 28.98 0.00 34.94 3.99
2406 2421 2.724358 GTTTTCGGCGCCACGTTG 60.724 61.111 28.98 9.94 34.94 4.10
2407 2422 3.955101 TTTTCGGCGCCACGTTGG 61.955 61.111 28.98 9.08 41.55 3.77
2408 2423 4.912485 TTTCGGCGCCACGTTGGA 62.912 61.111 28.98 11.71 40.96 3.53
2413 2428 3.419759 GCGCCACGTTGGACGATT 61.420 61.111 17.57 0.00 46.05 3.34
2414 2429 2.776072 CGCCACGTTGGACGATTC 59.224 61.111 7.54 0.00 46.05 2.52
2415 2430 1.736645 CGCCACGTTGGACGATTCT 60.737 57.895 7.54 0.00 46.05 2.40
2416 2431 0.457166 CGCCACGTTGGACGATTCTA 60.457 55.000 7.54 0.00 46.05 2.10
2417 2432 1.278238 GCCACGTTGGACGATTCTAG 58.722 55.000 7.54 0.00 46.05 2.43
2418 2433 1.403780 GCCACGTTGGACGATTCTAGT 60.404 52.381 7.54 0.00 46.05 2.57
2419 2434 2.259618 CCACGTTGGACGATTCTAGTG 58.740 52.381 7.54 0.00 46.05 2.74
2420 2435 2.352421 CCACGTTGGACGATTCTAGTGT 60.352 50.000 7.54 0.00 46.05 3.55
2421 2436 2.661675 CACGTTGGACGATTCTAGTGTG 59.338 50.000 7.54 0.00 46.05 3.82
2422 2437 1.654105 CGTTGGACGATTCTAGTGTGC 59.346 52.381 0.00 0.00 46.05 4.57
2423 2438 1.654105 GTTGGACGATTCTAGTGTGCG 59.346 52.381 0.00 0.00 0.00 5.34
2424 2439 0.172578 TGGACGATTCTAGTGTGCGG 59.827 55.000 0.00 0.00 0.00 5.69
2425 2440 0.172803 GGACGATTCTAGTGTGCGGT 59.827 55.000 0.00 0.00 0.00 5.68
2426 2441 1.269166 GACGATTCTAGTGTGCGGTG 58.731 55.000 0.00 0.00 0.00 4.94
2427 2442 0.601558 ACGATTCTAGTGTGCGGTGT 59.398 50.000 0.00 0.00 0.00 4.16
2428 2443 0.992072 CGATTCTAGTGTGCGGTGTG 59.008 55.000 0.00 0.00 0.00 3.82
2429 2444 0.721718 GATTCTAGTGTGCGGTGTGC 59.278 55.000 0.00 0.00 46.70 4.57
2439 2454 3.041940 CGGTGTGCGAGTGGGTTC 61.042 66.667 0.00 0.00 0.00 3.62
2440 2455 2.110213 GGTGTGCGAGTGGGTTCA 59.890 61.111 0.00 0.00 0.00 3.18
2441 2456 2.251642 GGTGTGCGAGTGGGTTCAC 61.252 63.158 0.00 0.00 43.93 3.18
2442 2457 2.110213 TGTGCGAGTGGGTTCACC 59.890 61.111 0.00 0.00 44.64 4.02
2451 2466 4.006357 GGGTTCACCCGCACGGTA 62.006 66.667 8.49 0.00 46.14 4.02
2452 2467 2.433664 GGTTCACCCGCACGGTAG 60.434 66.667 8.49 0.00 46.14 3.18
2453 2468 2.341176 GTTCACCCGCACGGTAGT 59.659 61.111 8.49 0.00 46.14 2.73
2454 2469 1.301165 GTTCACCCGCACGGTAGTT 60.301 57.895 8.49 0.00 46.14 2.24
2455 2470 1.301087 TTCACCCGCACGGTAGTTG 60.301 57.895 8.49 0.03 46.14 3.16
2456 2471 3.419759 CACCCGCACGGTAGTTGC 61.420 66.667 8.49 0.00 46.14 4.17
2457 2472 4.692475 ACCCGCACGGTAGTTGCC 62.692 66.667 8.49 0.00 45.97 4.52
2458 2473 4.690719 CCCGCACGGTAGTTGCCA 62.691 66.667 8.49 0.00 0.00 4.92
2459 2474 2.435938 CCGCACGGTAGTTGCCAT 60.436 61.111 0.00 0.00 0.00 4.40
2460 2475 2.461110 CCGCACGGTAGTTGCCATC 61.461 63.158 0.00 0.00 0.00 3.51
2461 2476 2.461110 CGCACGGTAGTTGCCATCC 61.461 63.158 0.00 0.00 0.00 3.51
2462 2477 2.112815 GCACGGTAGTTGCCATCCC 61.113 63.158 0.00 0.00 0.00 3.85
2463 2478 1.813753 CACGGTAGTTGCCATCCCG 60.814 63.158 0.00 0.00 44.06 5.14
2464 2479 2.895372 CGGTAGTTGCCATCCCGC 60.895 66.667 0.00 0.00 0.00 6.13
2465 2480 2.895372 GGTAGTTGCCATCCCGCG 60.895 66.667 0.00 0.00 0.00 6.46
2466 2481 2.895372 GTAGTTGCCATCCCGCGG 60.895 66.667 21.04 21.04 0.00 6.46
2467 2482 3.395702 TAGTTGCCATCCCGCGGT 61.396 61.111 26.12 2.55 0.00 5.68
2468 2483 3.379865 TAGTTGCCATCCCGCGGTC 62.380 63.158 26.12 7.98 0.00 4.79
2470 2485 4.776322 TTGCCATCCCGCGGTCAG 62.776 66.667 26.12 12.70 0.00 3.51
2481 2496 4.988598 CGGTCAGCGGTTGCCACT 62.989 66.667 5.26 0.00 44.31 4.00
2482 2497 3.357079 GGTCAGCGGTTGCCACTG 61.357 66.667 0.00 0.00 44.31 3.66
2483 2498 2.280797 GTCAGCGGTTGCCACTGA 60.281 61.111 0.00 2.13 39.95 3.41
2484 2499 2.031012 TCAGCGGTTGCCACTGAG 59.969 61.111 0.00 0.00 37.72 3.35
2485 2500 2.031012 CAGCGGTTGCCACTGAGA 59.969 61.111 0.00 0.00 44.31 3.27
2486 2501 2.031516 CAGCGGTTGCCACTGAGAG 61.032 63.158 0.00 0.00 44.31 3.20
2487 2502 2.743928 GCGGTTGCCACTGAGAGG 60.744 66.667 0.00 0.00 33.98 3.69
2495 2510 4.363990 CACTGAGAGGCGTGCGGT 62.364 66.667 0.00 0.00 0.00 5.68
2496 2511 4.363990 ACTGAGAGGCGTGCGGTG 62.364 66.667 0.00 0.00 0.00 4.94
2499 2514 4.373116 GAGAGGCGTGCGGTGGAA 62.373 66.667 0.00 0.00 0.00 3.53
2500 2515 4.681978 AGAGGCGTGCGGTGGAAC 62.682 66.667 0.00 0.00 0.00 3.62
2501 2516 4.681978 GAGGCGTGCGGTGGAACT 62.682 66.667 0.00 0.00 36.74 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 4.179599 GGAGGAGGAGGGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
530 531 5.128008 AGCAAGTGACTAGTAGGAAGAATCC 59.872 44.000 0.00 0.00 46.98 3.01
711 717 2.433604 ACATGGCGAGATCAATCAGACT 59.566 45.455 0.00 0.00 0.00 3.24
751 757 7.168905 ACTAAGCCTGCTACTGTTTATTTTCT 58.831 34.615 0.00 0.00 0.00 2.52
762 768 3.771577 ACACAAACTAAGCCTGCTACT 57.228 42.857 0.00 0.00 0.00 2.57
863 869 1.258982 CGATGGTTACGAAGCTGCATC 59.741 52.381 1.02 0.00 0.00 3.91
934 943 1.144503 GAGGTGGAATGAGCCATGGAT 59.855 52.381 18.40 10.08 40.68 3.41
1028 1040 2.424705 GAACACCGGCGACCTGTACA 62.425 60.000 9.30 0.00 0.00 2.90
1569 1581 6.024049 GCAAAACAGAGCAATGTAGTACATC 58.976 40.000 16.06 4.97 37.97 3.06
1591 1603 4.745125 CGAGCGGATTAGAATTTAGAAGCA 59.255 41.667 0.00 0.00 0.00 3.91
1612 1624 3.224324 GGCCGCCCATCTCTACGA 61.224 66.667 0.00 0.00 0.00 3.43
1694 1706 4.023279 GTGCCAATCACACAACACTATCAA 60.023 41.667 0.00 0.00 44.98 2.57
1809 1823 8.876303 ACTACTATCAGATGAGCATAGAATGA 57.124 34.615 0.00 0.00 0.00 2.57
1814 1828 7.686438 AGTGACTACTATCAGATGAGCATAG 57.314 40.000 0.00 0.00 34.74 2.23
1824 1838 4.991153 TCAGCCAAGTGACTACTATCAG 57.009 45.455 0.00 0.00 35.69 2.90
1851 1865 4.142447 GCTTGTCAACATCATGAGCTGATT 60.142 41.667 0.09 0.00 42.07 2.57
1852 1866 3.377485 GCTTGTCAACATCATGAGCTGAT 59.623 43.478 0.09 0.00 45.78 2.90
1861 1875 7.386059 TGTCTCTAATAAGCTTGTCAACATCA 58.614 34.615 9.86 0.00 0.00 3.07
1937 1951 4.381079 GCTATTATGTTCCACCGGCAAAAA 60.381 41.667 0.00 0.00 0.00 1.94
1938 1952 3.129638 GCTATTATGTTCCACCGGCAAAA 59.870 43.478 0.00 0.00 0.00 2.44
1940 1954 2.294074 GCTATTATGTTCCACCGGCAA 58.706 47.619 0.00 0.00 0.00 4.52
1941 1955 1.476110 GGCTATTATGTTCCACCGGCA 60.476 52.381 0.00 0.00 0.00 5.69
1942 1956 1.202770 AGGCTATTATGTTCCACCGGC 60.203 52.381 0.00 0.00 0.00 6.13
1943 1957 2.104111 TCAGGCTATTATGTTCCACCGG 59.896 50.000 0.00 0.00 0.00 5.28
1944 1958 3.469008 TCAGGCTATTATGTTCCACCG 57.531 47.619 0.00 0.00 0.00 4.94
1945 1959 7.665559 TCAAATATCAGGCTATTATGTTCCACC 59.334 37.037 0.00 0.00 0.00 4.61
1946 1960 8.621532 TCAAATATCAGGCTATTATGTTCCAC 57.378 34.615 0.00 0.00 0.00 4.02
1947 1961 8.659527 TCTCAAATATCAGGCTATTATGTTCCA 58.340 33.333 0.00 0.00 0.00 3.53
1948 1962 9.507329 TTCTCAAATATCAGGCTATTATGTTCC 57.493 33.333 0.00 0.00 0.00 3.62
1957 1971 9.770097 CAGATTAACTTCTCAAATATCAGGCTA 57.230 33.333 0.00 0.00 0.00 3.93
1958 1972 7.228308 GCAGATTAACTTCTCAAATATCAGGCT 59.772 37.037 0.00 0.00 0.00 4.58
1959 1973 7.012704 TGCAGATTAACTTCTCAAATATCAGGC 59.987 37.037 0.00 0.00 0.00 4.85
1960 1974 8.442632 TGCAGATTAACTTCTCAAATATCAGG 57.557 34.615 0.00 0.00 0.00 3.86
1966 1980 9.064706 CCTCATATGCAGATTAACTTCTCAAAT 57.935 33.333 0.00 0.00 0.00 2.32
1967 1981 8.049117 ACCTCATATGCAGATTAACTTCTCAAA 58.951 33.333 0.00 0.00 0.00 2.69
1968 1982 7.568349 ACCTCATATGCAGATTAACTTCTCAA 58.432 34.615 0.00 0.00 0.00 3.02
1969 1983 7.129457 ACCTCATATGCAGATTAACTTCTCA 57.871 36.000 0.00 0.00 0.00 3.27
1970 1984 9.717942 AATACCTCATATGCAGATTAACTTCTC 57.282 33.333 0.00 0.00 0.00 2.87
1971 1985 9.717942 GAATACCTCATATGCAGATTAACTTCT 57.282 33.333 0.00 0.00 0.00 2.85
1972 1986 9.717942 AGAATACCTCATATGCAGATTAACTTC 57.282 33.333 0.00 0.00 0.00 3.01
1974 1988 9.717942 GAAGAATACCTCATATGCAGATTAACT 57.282 33.333 0.00 0.00 0.00 2.24
1975 1989 9.494271 TGAAGAATACCTCATATGCAGATTAAC 57.506 33.333 0.00 0.00 0.00 2.01
1977 1991 9.881649 GATGAAGAATACCTCATATGCAGATTA 57.118 33.333 0.00 0.00 0.00 1.75
1978 1992 7.828223 GGATGAAGAATACCTCATATGCAGATT 59.172 37.037 0.00 0.00 0.00 2.40
1979 1993 7.337167 GGATGAAGAATACCTCATATGCAGAT 58.663 38.462 0.00 0.00 0.00 2.90
1980 1994 6.296087 GGGATGAAGAATACCTCATATGCAGA 60.296 42.308 0.00 0.00 36.14 4.26
1981 1995 5.879223 GGGATGAAGAATACCTCATATGCAG 59.121 44.000 0.00 0.00 36.14 4.41
1982 1996 5.280676 GGGGATGAAGAATACCTCATATGCA 60.281 44.000 0.00 0.00 39.62 3.96
1983 1997 5.189180 GGGGATGAAGAATACCTCATATGC 58.811 45.833 0.00 0.00 39.62 3.14
1984 1998 5.749462 GGGGGATGAAGAATACCTCATATG 58.251 45.833 0.00 0.00 40.06 1.78
2004 2018 2.240667 AGAATGAGAGTTCACATGGGGG 59.759 50.000 0.00 0.00 35.83 5.40
2005 2019 3.641434 AGAATGAGAGTTCACATGGGG 57.359 47.619 0.00 0.00 35.83 4.96
2006 2020 4.514441 GCATAGAATGAGAGTTCACATGGG 59.486 45.833 0.00 0.00 35.83 4.00
2007 2021 5.366460 AGCATAGAATGAGAGTTCACATGG 58.634 41.667 0.00 0.00 35.83 3.66
2008 2022 6.047231 TGAGCATAGAATGAGAGTTCACATG 58.953 40.000 0.00 0.00 35.83 3.21
2009 2023 6.231258 TGAGCATAGAATGAGAGTTCACAT 57.769 37.500 0.00 0.00 35.83 3.21
2010 2024 5.665916 TGAGCATAGAATGAGAGTTCACA 57.334 39.130 0.00 0.00 35.83 3.58
2011 2025 6.421501 CAGATGAGCATAGAATGAGAGTTCAC 59.578 42.308 0.00 0.00 35.83 3.18
2012 2026 6.323225 TCAGATGAGCATAGAATGAGAGTTCA 59.677 38.462 0.00 0.00 37.81 3.18
2013 2027 6.747125 TCAGATGAGCATAGAATGAGAGTTC 58.253 40.000 0.00 0.00 0.00 3.01
2014 2028 6.728089 TCAGATGAGCATAGAATGAGAGTT 57.272 37.500 0.00 0.00 0.00 3.01
2015 2029 6.921486 ATCAGATGAGCATAGAATGAGAGT 57.079 37.500 0.00 0.00 0.00 3.24
2016 2030 8.058667 ACTATCAGATGAGCATAGAATGAGAG 57.941 38.462 0.00 0.00 32.36 3.20
2017 2031 9.176460 CTACTATCAGATGAGCATAGAATGAGA 57.824 37.037 0.00 0.00 0.00 3.27
2018 2032 8.959548 ACTACTATCAGATGAGCATAGAATGAG 58.040 37.037 0.00 0.00 0.00 2.90
2019 2033 8.876303 ACTACTATCAGATGAGCATAGAATGA 57.124 34.615 0.00 0.00 0.00 2.57
2020 2034 8.738106 TGACTACTATCAGATGAGCATAGAATG 58.262 37.037 0.00 0.00 0.00 2.67
2021 2035 8.739039 GTGACTACTATCAGATGAGCATAGAAT 58.261 37.037 0.00 0.00 0.00 2.40
2022 2036 7.941790 AGTGACTACTATCAGATGAGCATAGAA 59.058 37.037 0.00 0.00 34.74 2.10
2023 2037 7.457561 AGTGACTACTATCAGATGAGCATAGA 58.542 38.462 0.00 0.00 34.74 1.98
2024 2038 7.686438 AGTGACTACTATCAGATGAGCATAG 57.314 40.000 0.00 0.00 34.74 2.23
2025 2039 7.040132 CCAAGTGACTACTATCAGATGAGCATA 60.040 40.741 0.00 0.00 35.69 3.14
2026 2040 6.239261 CCAAGTGACTACTATCAGATGAGCAT 60.239 42.308 0.00 0.00 35.69 3.79
2027 2041 5.068329 CCAAGTGACTACTATCAGATGAGCA 59.932 44.000 0.00 0.00 35.69 4.26
2028 2042 5.527951 CCAAGTGACTACTATCAGATGAGC 58.472 45.833 0.00 0.00 35.69 4.26
2029 2043 5.301551 AGCCAAGTGACTACTATCAGATGAG 59.698 44.000 0.00 0.00 35.69 2.90
2030 2044 5.068329 CAGCCAAGTGACTACTATCAGATGA 59.932 44.000 0.00 0.00 35.69 2.92
2031 2045 5.068329 TCAGCCAAGTGACTACTATCAGATG 59.932 44.000 0.00 0.00 35.69 2.90
2032 2046 5.204292 TCAGCCAAGTGACTACTATCAGAT 58.796 41.667 0.00 0.00 35.69 2.90
2033 2047 4.600062 TCAGCCAAGTGACTACTATCAGA 58.400 43.478 0.00 0.00 35.69 3.27
2034 2048 4.991153 TCAGCCAAGTGACTACTATCAG 57.009 45.455 0.00 0.00 35.69 2.90
2035 2049 6.365520 TCTATCAGCCAAGTGACTACTATCA 58.634 40.000 0.00 0.00 35.69 2.15
2036 2050 6.885952 TCTATCAGCCAAGTGACTACTATC 57.114 41.667 0.00 0.00 35.69 2.08
2037 2051 7.661536 TTTCTATCAGCCAAGTGACTACTAT 57.338 36.000 0.00 0.00 35.69 2.12
2038 2052 7.476540 TTTTCTATCAGCCAAGTGACTACTA 57.523 36.000 0.00 0.00 35.69 1.82
2039 2053 6.360370 TTTTCTATCAGCCAAGTGACTACT 57.640 37.500 0.00 0.00 39.32 2.57
2040 2054 6.818644 TGATTTTCTATCAGCCAAGTGACTAC 59.181 38.462 0.00 0.00 0.00 2.73
2041 2055 6.946340 TGATTTTCTATCAGCCAAGTGACTA 58.054 36.000 0.00 0.00 0.00 2.59
2042 2056 5.809001 TGATTTTCTATCAGCCAAGTGACT 58.191 37.500 0.00 0.00 0.00 3.41
2043 2057 6.116680 CTGATTTTCTATCAGCCAAGTGAC 57.883 41.667 2.18 0.00 39.03 3.67
2052 2066 7.731882 ACATCATGAGCTGATTTTCTATCAG 57.268 36.000 0.09 9.79 42.07 2.90
2053 2067 7.771826 TCAACATCATGAGCTGATTTTCTATCA 59.228 33.333 0.09 0.00 42.07 2.15
2054 2068 8.068977 GTCAACATCATGAGCTGATTTTCTATC 58.931 37.037 0.09 0.00 42.07 2.08
2055 2069 7.555195 TGTCAACATCATGAGCTGATTTTCTAT 59.445 33.333 0.09 0.00 42.07 1.98
2056 2070 6.880529 TGTCAACATCATGAGCTGATTTTCTA 59.119 34.615 0.09 0.00 42.07 2.10
2057 2071 5.708697 TGTCAACATCATGAGCTGATTTTCT 59.291 36.000 0.09 0.00 42.07 2.52
2058 2072 5.946298 TGTCAACATCATGAGCTGATTTTC 58.054 37.500 0.09 0.00 42.07 2.29
2059 2073 5.970317 TGTCAACATCATGAGCTGATTTT 57.030 34.783 0.09 0.00 42.07 1.82
2060 2074 5.621555 GCTTGTCAACATCATGAGCTGATTT 60.622 40.000 0.09 0.00 42.07 2.17
2061 2075 4.142447 GCTTGTCAACATCATGAGCTGATT 60.142 41.667 0.09 0.00 42.07 2.57
2062 2076 3.377485 GCTTGTCAACATCATGAGCTGAT 59.623 43.478 0.09 0.00 45.78 2.90
2063 2077 2.745821 GCTTGTCAACATCATGAGCTGA 59.254 45.455 0.09 0.73 38.53 4.26
2064 2078 2.747989 AGCTTGTCAACATCATGAGCTG 59.252 45.455 0.09 0.00 30.07 4.24
2065 2079 3.069079 AGCTTGTCAACATCATGAGCT 57.931 42.857 0.09 0.00 0.00 4.09
2066 2080 3.844577 AAGCTTGTCAACATCATGAGC 57.155 42.857 0.00 0.00 0.00 4.26
2067 2081 8.429493 TCTAATAAGCTTGTCAACATCATGAG 57.571 34.615 9.86 0.00 0.00 2.90
2068 2082 8.260114 TCTCTAATAAGCTTGTCAACATCATGA 58.740 33.333 9.86 0.00 0.00 3.07
2069 2083 8.333908 GTCTCTAATAAGCTTGTCAACATCATG 58.666 37.037 9.86 0.00 0.00 3.07
2070 2084 8.043113 TGTCTCTAATAAGCTTGTCAACATCAT 58.957 33.333 9.86 0.00 0.00 2.45
2071 2085 7.386059 TGTCTCTAATAAGCTTGTCAACATCA 58.614 34.615 9.86 0.00 0.00 3.07
2072 2086 7.834068 TGTCTCTAATAAGCTTGTCAACATC 57.166 36.000 9.86 0.00 0.00 3.06
2073 2087 8.671921 CATTGTCTCTAATAAGCTTGTCAACAT 58.328 33.333 9.86 0.00 0.00 2.71
2074 2088 7.119699 CCATTGTCTCTAATAAGCTTGTCAACA 59.880 37.037 9.86 1.75 0.00 3.33
2075 2089 7.334421 TCCATTGTCTCTAATAAGCTTGTCAAC 59.666 37.037 9.86 0.00 0.00 3.18
2076 2090 7.394016 TCCATTGTCTCTAATAAGCTTGTCAA 58.606 34.615 9.86 2.20 0.00 3.18
2077 2091 6.946340 TCCATTGTCTCTAATAAGCTTGTCA 58.054 36.000 9.86 0.00 0.00 3.58
2078 2092 7.766278 TCTTCCATTGTCTCTAATAAGCTTGTC 59.234 37.037 9.86 0.00 0.00 3.18
2079 2093 7.624549 TCTTCCATTGTCTCTAATAAGCTTGT 58.375 34.615 9.86 0.00 0.00 3.16
2080 2094 7.768120 ACTCTTCCATTGTCTCTAATAAGCTTG 59.232 37.037 9.86 0.00 0.00 4.01
2081 2095 7.856415 ACTCTTCCATTGTCTCTAATAAGCTT 58.144 34.615 3.48 3.48 0.00 3.74
2082 2096 7.430760 ACTCTTCCATTGTCTCTAATAAGCT 57.569 36.000 0.00 0.00 0.00 3.74
2083 2097 9.771534 ATAACTCTTCCATTGTCTCTAATAAGC 57.228 33.333 0.00 0.00 0.00 3.09
2090 2104 7.550906 GCTTTACATAACTCTTCCATTGTCTCT 59.449 37.037 0.00 0.00 0.00 3.10
2091 2105 7.550906 AGCTTTACATAACTCTTCCATTGTCTC 59.449 37.037 0.00 0.00 0.00 3.36
2092 2106 7.335422 CAGCTTTACATAACTCTTCCATTGTCT 59.665 37.037 0.00 0.00 0.00 3.41
2093 2107 7.467623 CAGCTTTACATAACTCTTCCATTGTC 58.532 38.462 0.00 0.00 0.00 3.18
2094 2108 6.127897 GCAGCTTTACATAACTCTTCCATTGT 60.128 38.462 0.00 0.00 0.00 2.71
2095 2109 6.127925 TGCAGCTTTACATAACTCTTCCATTG 60.128 38.462 0.00 0.00 0.00 2.82
2096 2110 5.945784 TGCAGCTTTACATAACTCTTCCATT 59.054 36.000 0.00 0.00 0.00 3.16
2097 2111 5.500234 TGCAGCTTTACATAACTCTTCCAT 58.500 37.500 0.00 0.00 0.00 3.41
2098 2112 4.905429 TGCAGCTTTACATAACTCTTCCA 58.095 39.130 0.00 0.00 0.00 3.53
2099 2113 6.442513 AATGCAGCTTTACATAACTCTTCC 57.557 37.500 0.00 0.00 0.00 3.46
2100 2114 8.239998 AGAAAATGCAGCTTTACATAACTCTTC 58.760 33.333 0.00 0.00 0.00 2.87
2101 2115 8.115490 AGAAAATGCAGCTTTACATAACTCTT 57.885 30.769 0.00 0.00 0.00 2.85
2102 2116 7.693969 AGAAAATGCAGCTTTACATAACTCT 57.306 32.000 0.00 0.00 0.00 3.24
2103 2117 9.443283 CATAGAAAATGCAGCTTTACATAACTC 57.557 33.333 0.00 0.00 0.00 3.01
2104 2118 8.408601 CCATAGAAAATGCAGCTTTACATAACT 58.591 33.333 0.00 0.00 0.00 2.24
2105 2119 8.405531 TCCATAGAAAATGCAGCTTTACATAAC 58.594 33.333 0.00 0.00 0.00 1.89
2106 2120 8.518430 TCCATAGAAAATGCAGCTTTACATAA 57.482 30.769 0.00 0.00 0.00 1.90
2107 2121 8.405531 GTTCCATAGAAAATGCAGCTTTACATA 58.594 33.333 0.00 0.00 32.58 2.29
2108 2122 7.093814 TGTTCCATAGAAAATGCAGCTTTACAT 60.094 33.333 0.00 0.00 32.58 2.29
2109 2123 6.208402 TGTTCCATAGAAAATGCAGCTTTACA 59.792 34.615 0.00 0.00 32.58 2.41
2110 2124 6.620678 TGTTCCATAGAAAATGCAGCTTTAC 58.379 36.000 0.00 0.00 32.58 2.01
2111 2125 6.832520 TGTTCCATAGAAAATGCAGCTTTA 57.167 33.333 0.00 0.00 32.58 1.85
2112 2126 5.726980 TGTTCCATAGAAAATGCAGCTTT 57.273 34.783 0.00 0.00 32.58 3.51
2113 2127 5.927281 ATGTTCCATAGAAAATGCAGCTT 57.073 34.783 0.00 0.00 32.58 3.74
2114 2128 7.592885 ATTATGTTCCATAGAAAATGCAGCT 57.407 32.000 0.00 0.00 32.00 4.24
2115 2129 7.540055 GCTATTATGTTCCATAGAAAATGCAGC 59.460 37.037 0.00 0.00 32.00 5.25
2116 2130 8.025445 GGCTATTATGTTCCATAGAAAATGCAG 58.975 37.037 0.00 0.00 32.00 4.41
2117 2131 7.039784 GGGCTATTATGTTCCATAGAAAATGCA 60.040 37.037 0.00 0.00 32.00 3.96
2118 2132 7.177392 AGGGCTATTATGTTCCATAGAAAATGC 59.823 37.037 0.00 0.00 32.00 3.56
2119 2133 8.641498 AGGGCTATTATGTTCCATAGAAAATG 57.359 34.615 0.00 0.00 32.00 2.32
2120 2134 9.660544 AAAGGGCTATTATGTTCCATAGAAAAT 57.339 29.630 0.00 0.00 34.20 1.82
2121 2135 9.487442 AAAAGGGCTATTATGTTCCATAGAAAA 57.513 29.630 0.00 0.00 32.58 2.29
2122 2136 9.487442 AAAAAGGGCTATTATGTTCCATAGAAA 57.513 29.630 0.00 0.00 32.58 2.52
2147 2161 4.381079 GCTATTATGTTCCACCGGCAAAAA 60.381 41.667 0.00 0.00 0.00 1.94
2148 2162 3.129638 GCTATTATGTTCCACCGGCAAAA 59.870 43.478 0.00 0.00 0.00 2.44
2149 2163 2.685897 GCTATTATGTTCCACCGGCAAA 59.314 45.455 0.00 0.00 0.00 3.68
2150 2164 2.294074 GCTATTATGTTCCACCGGCAA 58.706 47.619 0.00 0.00 0.00 4.52
2151 2165 1.476110 GGCTATTATGTTCCACCGGCA 60.476 52.381 0.00 0.00 0.00 5.69
2152 2166 1.202770 AGGCTATTATGTTCCACCGGC 60.203 52.381 0.00 0.00 0.00 6.13
2153 2167 2.104111 TCAGGCTATTATGTTCCACCGG 59.896 50.000 0.00 0.00 0.00 5.28
2154 2168 3.469008 TCAGGCTATTATGTTCCACCG 57.531 47.619 0.00 0.00 0.00 4.94
2155 2169 4.074970 CCATCAGGCTATTATGTTCCACC 58.925 47.826 0.00 0.00 0.00 4.61
2156 2170 4.718961 ACCATCAGGCTATTATGTTCCAC 58.281 43.478 0.00 0.00 39.06 4.02
2157 2171 5.387113 AACCATCAGGCTATTATGTTCCA 57.613 39.130 0.00 0.00 39.06 3.53
2158 2172 6.064717 AGAAACCATCAGGCTATTATGTTCC 58.935 40.000 0.00 0.00 39.06 3.62
2159 2173 6.767902 TGAGAAACCATCAGGCTATTATGTTC 59.232 38.462 0.00 0.00 39.06 3.18
2160 2174 6.662755 TGAGAAACCATCAGGCTATTATGTT 58.337 36.000 0.00 0.00 39.06 2.71
2161 2175 6.252599 TGAGAAACCATCAGGCTATTATGT 57.747 37.500 0.00 0.00 39.06 2.29
2162 2176 8.316946 TCTATGAGAAACCATCAGGCTATTATG 58.683 37.037 0.00 0.00 39.06 1.90
2163 2177 8.441311 TCTATGAGAAACCATCAGGCTATTAT 57.559 34.615 0.00 0.00 39.06 1.28
2164 2178 7.510685 ACTCTATGAGAAACCATCAGGCTATTA 59.489 37.037 1.25 0.00 33.95 0.98
2165 2179 6.328672 ACTCTATGAGAAACCATCAGGCTATT 59.671 38.462 1.25 0.00 33.95 1.73
2166 2180 5.843421 ACTCTATGAGAAACCATCAGGCTAT 59.157 40.000 1.25 0.00 33.95 2.97
2167 2181 5.211973 ACTCTATGAGAAACCATCAGGCTA 58.788 41.667 1.25 0.00 33.95 3.93
2168 2182 4.036518 ACTCTATGAGAAACCATCAGGCT 58.963 43.478 1.25 0.00 33.95 4.58
2169 2183 4.414337 ACTCTATGAGAAACCATCAGGC 57.586 45.455 1.25 0.00 33.95 4.85
2170 2184 7.281100 GGTAAAACTCTATGAGAAACCATCAGG 59.719 40.741 1.25 0.00 35.64 3.86
2171 2185 7.824289 TGGTAAAACTCTATGAGAAACCATCAG 59.176 37.037 1.25 0.00 31.52 2.90
2172 2186 7.685481 TGGTAAAACTCTATGAGAAACCATCA 58.315 34.615 1.25 0.00 31.52 3.07
2173 2187 8.041323 TCTGGTAAAACTCTATGAGAAACCATC 58.959 37.037 1.25 0.00 33.78 3.51
2174 2188 7.918076 TCTGGTAAAACTCTATGAGAAACCAT 58.082 34.615 1.25 0.00 33.78 3.55
2175 2189 7.311092 TCTGGTAAAACTCTATGAGAAACCA 57.689 36.000 1.25 7.82 33.48 3.67
2176 2190 8.617290 TTTCTGGTAAAACTCTATGAGAAACC 57.383 34.615 1.25 4.21 33.32 3.27
2202 2216 9.638176 AAGCATCCATTTTATCAAACTCTAGAT 57.362 29.630 0.00 0.00 0.00 1.98
2288 2303 0.875728 TGTGGGCGTTAACATTTCCG 59.124 50.000 6.39 0.00 0.00 4.30
2289 2304 1.400500 CGTGTGGGCGTTAACATTTCC 60.400 52.381 6.39 1.91 0.00 3.13
2290 2305 1.264826 ACGTGTGGGCGTTAACATTTC 59.735 47.619 6.39 0.00 43.04 2.17
2291 2306 1.002251 CACGTGTGGGCGTTAACATTT 60.002 47.619 7.58 0.00 43.83 2.32
2292 2307 0.589223 CACGTGTGGGCGTTAACATT 59.411 50.000 7.58 0.00 43.83 2.71
2293 2308 0.533308 ACACGTGTGGGCGTTAACAT 60.533 50.000 22.71 0.00 43.83 2.71
2294 2309 1.153409 ACACGTGTGGGCGTTAACA 60.153 52.632 22.71 0.00 43.83 2.41
2295 2310 1.277440 CACACGTGTGGGCGTTAAC 59.723 57.895 35.65 0.00 43.83 2.01
2296 2311 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
2312 2327 4.308458 CGGAGTGGTGAACGCCCA 62.308 66.667 1.86 0.00 45.45 5.36
2313 2328 4.309950 ACGGAGTGGTGAACGCCC 62.310 66.667 1.86 0.00 45.45 6.13
2326 2341 3.529341 ATGCTTGCGTGTGGACGGA 62.529 57.895 0.00 0.00 46.20 4.69
2327 2342 3.027170 GATGCTTGCGTGTGGACGG 62.027 63.158 0.00 0.00 46.20 4.79
2329 2344 2.476051 CGATGCTTGCGTGTGGAC 59.524 61.111 0.00 0.00 0.00 4.02
2330 2345 3.422303 GCGATGCTTGCGTGTGGA 61.422 61.111 0.00 0.00 0.00 4.02
2331 2346 4.465512 GGCGATGCTTGCGTGTGG 62.466 66.667 0.00 0.00 0.00 4.17
2332 2347 4.799473 CGGCGATGCTTGCGTGTG 62.799 66.667 0.00 0.00 0.00 3.82
2334 2349 4.088762 AACGGCGATGCTTGCGTG 62.089 61.111 16.62 0.00 0.00 5.34
2335 2350 4.088762 CAACGGCGATGCTTGCGT 62.089 61.111 16.62 0.00 0.00 5.24
2336 2351 4.817063 CCAACGGCGATGCTTGCG 62.817 66.667 16.62 0.00 0.00 4.85
2337 2352 2.747507 AAACCAACGGCGATGCTTGC 62.748 55.000 16.62 0.00 0.00 4.01
2338 2353 0.729140 GAAACCAACGGCGATGCTTG 60.729 55.000 16.62 7.53 0.00 4.01
2339 2354 1.579429 GAAACCAACGGCGATGCTT 59.421 52.632 16.62 8.23 0.00 3.91
2340 2355 2.677003 CGAAACCAACGGCGATGCT 61.677 57.895 16.62 0.00 0.00 3.79
2341 2356 2.202298 CGAAACCAACGGCGATGC 60.202 61.111 16.62 0.00 0.00 3.91
2342 2357 0.040781 AAACGAAACCAACGGCGATG 60.041 50.000 16.62 13.16 34.93 3.84
2343 2358 0.664224 AAAACGAAACCAACGGCGAT 59.336 45.000 16.62 0.00 34.93 4.58
2344 2359 0.248134 CAAAACGAAACCAACGGCGA 60.248 50.000 16.62 0.00 34.93 5.54
2345 2360 1.803286 GCAAAACGAAACCAACGGCG 61.803 55.000 4.80 4.80 34.93 6.46
2346 2361 0.802607 TGCAAAACGAAACCAACGGC 60.803 50.000 0.00 0.00 34.93 5.68
2347 2362 0.917939 GTGCAAAACGAAACCAACGG 59.082 50.000 0.00 0.00 34.93 4.44
2358 2373 2.287547 TGCTCCAAGATTCGTGCAAAAC 60.288 45.455 0.00 0.00 0.00 2.43
2359 2374 1.952990 TGCTCCAAGATTCGTGCAAAA 59.047 42.857 0.00 0.00 0.00 2.44
2360 2375 1.603456 TGCTCCAAGATTCGTGCAAA 58.397 45.000 0.00 0.00 0.00 3.68
2361 2376 1.603456 TTGCTCCAAGATTCGTGCAA 58.397 45.000 0.00 0.00 36.45 4.08
2362 2377 1.603456 TTTGCTCCAAGATTCGTGCA 58.397 45.000 0.00 0.00 0.00 4.57
2363 2378 2.589014 CTTTTGCTCCAAGATTCGTGC 58.411 47.619 0.00 0.00 0.00 5.34
2364 2379 2.095059 CCCTTTTGCTCCAAGATTCGTG 60.095 50.000 0.00 0.00 0.00 4.35
2365 2380 2.162681 CCCTTTTGCTCCAAGATTCGT 58.837 47.619 0.00 0.00 0.00 3.85
2366 2381 1.135286 GCCCTTTTGCTCCAAGATTCG 60.135 52.381 0.00 0.00 0.00 3.34
2367 2382 2.094338 CAGCCCTTTTGCTCCAAGATTC 60.094 50.000 0.00 0.00 40.32 2.52
2368 2383 1.897802 CAGCCCTTTTGCTCCAAGATT 59.102 47.619 0.00 0.00 40.32 2.40
2369 2384 1.553706 CAGCCCTTTTGCTCCAAGAT 58.446 50.000 0.00 0.00 40.32 2.40
2370 2385 0.540365 CCAGCCCTTTTGCTCCAAGA 60.540 55.000 0.00 0.00 40.32 3.02
2371 2386 0.829182 ACCAGCCCTTTTGCTCCAAG 60.829 55.000 0.00 0.00 40.32 3.61
2372 2387 0.398381 AACCAGCCCTTTTGCTCCAA 60.398 50.000 0.00 0.00 40.32 3.53
2373 2388 0.398381 AAACCAGCCCTTTTGCTCCA 60.398 50.000 0.00 0.00 40.32 3.86
2374 2389 0.758734 AAAACCAGCCCTTTTGCTCC 59.241 50.000 0.00 0.00 40.32 4.70
2375 2390 1.602920 CGAAAACCAGCCCTTTTGCTC 60.603 52.381 0.00 0.00 40.32 4.26
2376 2391 0.389025 CGAAAACCAGCCCTTTTGCT 59.611 50.000 0.00 0.00 44.00 3.91
2377 2392 0.599991 CCGAAAACCAGCCCTTTTGC 60.600 55.000 0.00 0.00 0.00 3.68
2378 2393 0.599991 GCCGAAAACCAGCCCTTTTG 60.600 55.000 0.00 0.00 0.00 2.44
2379 2394 1.745890 GCCGAAAACCAGCCCTTTT 59.254 52.632 0.00 0.00 0.00 2.27
2380 2395 2.561037 CGCCGAAAACCAGCCCTTT 61.561 57.895 0.00 0.00 0.00 3.11
2381 2396 2.983592 CGCCGAAAACCAGCCCTT 60.984 61.111 0.00 0.00 0.00 3.95
2385 2400 4.700365 GTGGCGCCGAAAACCAGC 62.700 66.667 23.90 0.00 33.12 4.85
2386 2401 4.383602 CGTGGCGCCGAAAACCAG 62.384 66.667 23.90 2.34 33.12 4.00
2388 2403 3.956317 AACGTGGCGCCGAAAACC 61.956 61.111 23.90 3.94 0.00 3.27
2389 2404 2.724358 CAACGTGGCGCCGAAAAC 60.724 61.111 23.90 13.61 0.00 2.43
2390 2405 3.955101 CCAACGTGGCGCCGAAAA 61.955 61.111 23.90 0.00 0.00 2.29
2391 2406 4.912485 TCCAACGTGGCGCCGAAA 62.912 61.111 23.90 0.00 37.47 3.46
2396 2411 3.362851 GAATCGTCCAACGTGGCGC 62.363 63.158 0.00 0.00 43.14 6.53
2397 2412 0.457166 TAGAATCGTCCAACGTGGCG 60.457 55.000 0.00 0.00 43.14 5.69
2398 2413 1.278238 CTAGAATCGTCCAACGTGGC 58.722 55.000 0.00 0.00 43.14 5.01
2399 2414 2.259618 CACTAGAATCGTCCAACGTGG 58.740 52.381 0.00 0.00 43.14 4.94
2400 2415 2.661675 CACACTAGAATCGTCCAACGTG 59.338 50.000 0.00 0.00 43.14 4.49
2401 2416 2.925306 GCACACTAGAATCGTCCAACGT 60.925 50.000 0.00 0.00 43.14 3.99
2402 2417 1.654105 GCACACTAGAATCGTCCAACG 59.346 52.381 0.00 0.00 44.19 4.10
2403 2418 1.654105 CGCACACTAGAATCGTCCAAC 59.346 52.381 0.00 0.00 0.00 3.77
2404 2419 1.403647 CCGCACACTAGAATCGTCCAA 60.404 52.381 0.00 0.00 0.00 3.53
2405 2420 0.172578 CCGCACACTAGAATCGTCCA 59.827 55.000 0.00 0.00 0.00 4.02
2406 2421 0.172803 ACCGCACACTAGAATCGTCC 59.827 55.000 0.00 0.00 0.00 4.79
2407 2422 1.269166 CACCGCACACTAGAATCGTC 58.731 55.000 0.00 0.00 0.00 4.20
2408 2423 0.601558 ACACCGCACACTAGAATCGT 59.398 50.000 0.00 0.00 0.00 3.73
2409 2424 0.992072 CACACCGCACACTAGAATCG 59.008 55.000 0.00 0.00 0.00 3.34
2410 2425 0.721718 GCACACCGCACACTAGAATC 59.278 55.000 0.00 0.00 41.79 2.52
2411 2426 1.014044 CGCACACCGCACACTAGAAT 61.014 55.000 0.00 0.00 42.60 2.40
2412 2427 1.663388 CGCACACCGCACACTAGAA 60.663 57.895 0.00 0.00 42.60 2.10
2413 2428 2.049526 CGCACACCGCACACTAGA 60.050 61.111 0.00 0.00 42.60 2.43
2414 2429 2.049526 TCGCACACCGCACACTAG 60.050 61.111 0.00 0.00 42.60 2.57
2415 2430 2.049526 CTCGCACACCGCACACTA 60.050 61.111 0.00 0.00 42.60 2.74
2416 2431 4.221422 ACTCGCACACCGCACACT 62.221 61.111 0.00 0.00 42.60 3.55
2417 2432 4.000557 CACTCGCACACCGCACAC 62.001 66.667 0.00 0.00 42.60 3.82
2422 2437 3.041940 GAACCCACTCGCACACCG 61.042 66.667 0.00 0.00 38.61 4.94
2423 2438 2.110213 TGAACCCACTCGCACACC 59.890 61.111 0.00 0.00 0.00 4.16
2424 2439 2.251642 GGTGAACCCACTCGCACAC 61.252 63.158 0.00 0.00 42.77 3.82
2425 2440 2.110213 GGTGAACCCACTCGCACA 59.890 61.111 0.00 0.00 42.77 4.57
2441 2456 3.969250 ATGGCAACTACCGTGCGGG 62.969 63.158 15.44 0.52 37.19 6.13
2442 2457 2.435938 ATGGCAACTACCGTGCGG 60.436 61.111 9.29 9.29 38.46 5.69
2443 2458 2.461110 GGATGGCAACTACCGTGCG 61.461 63.158 0.00 0.00 37.61 5.34
2444 2459 2.112815 GGGATGGCAACTACCGTGC 61.113 63.158 0.00 0.00 36.38 5.34
2445 2460 1.813753 CGGGATGGCAACTACCGTG 60.814 63.158 3.51 0.00 40.94 4.94
2446 2461 2.582436 CGGGATGGCAACTACCGT 59.418 61.111 3.51 0.00 40.94 4.83
2447 2462 2.895372 GCGGGATGGCAACTACCG 60.895 66.667 7.40 7.40 45.86 4.02
2448 2463 2.895372 CGCGGGATGGCAACTACC 60.895 66.667 0.00 0.00 37.61 3.18
2449 2464 2.895372 CCGCGGGATGGCAACTAC 60.895 66.667 20.10 0.00 37.61 2.73
2450 2465 3.379865 GACCGCGGGATGGCAACTA 62.380 63.158 31.76 0.00 37.61 2.24
2451 2466 4.778143 GACCGCGGGATGGCAACT 62.778 66.667 31.76 3.99 37.61 3.16
2453 2468 4.776322 CTGACCGCGGGATGGCAA 62.776 66.667 31.76 5.28 0.00 4.52
2464 2479 4.988598 AGTGGCAACCGCTGACCG 62.989 66.667 0.00 0.00 43.37 4.79
2469 2484 2.345244 CTCTCAGTGGCAACCGCT 59.655 61.111 0.00 0.00 46.26 5.52
2470 2485 2.743928 CCTCTCAGTGGCAACCGC 60.744 66.667 0.00 0.00 37.44 5.68
2478 2493 4.363990 ACCGCACGCCTCTCAGTG 62.364 66.667 0.00 0.00 41.01 3.66
2479 2494 4.363990 CACCGCACGCCTCTCAGT 62.364 66.667 0.00 0.00 0.00 3.41
2482 2497 4.373116 TTCCACCGCACGCCTCTC 62.373 66.667 0.00 0.00 0.00 3.20
2483 2498 4.681978 GTTCCACCGCACGCCTCT 62.682 66.667 0.00 0.00 0.00 3.69
2484 2499 4.681978 AGTTCCACCGCACGCCTC 62.682 66.667 0.00 0.00 0.00 4.70
2485 2500 4.988598 CAGTTCCACCGCACGCCT 62.989 66.667 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.