Multiple sequence alignment - TraesCS4B01G142100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G142100 chr4B 100.000 2495 0 0 1 2495 187435781 187438275 0.000000e+00 4608.0
1 TraesCS4B01G142100 chr4A 89.888 1335 112 17 513 1841 446948218 446946901 0.000000e+00 1696.0
2 TraesCS4B01G142100 chr4A 94.590 536 26 1 1958 2493 446770828 446770296 0.000000e+00 826.0
3 TraesCS4B01G142100 chr4A 97.015 268 8 0 1 268 446948470 446948203 3.780000e-123 451.0
4 TraesCS4B01G142100 chr4D 88.935 723 44 12 1805 2492 123090896 123090175 0.000000e+00 859.0
5 TraesCS4B01G142100 chr4D 92.212 565 37 6 1 560 122761108 122761670 0.000000e+00 793.0
6 TraesCS4B01G142100 chr4D 83.107 663 94 14 1388 2039 49306788 49306133 2.760000e-164 588.0
7 TraesCS4B01G142100 chr4D 90.947 243 19 2 1805 2047 123089274 123089513 8.610000e-85 324.0
8 TraesCS4B01G142100 chr4D 77.455 550 102 14 833 1374 49307382 49306847 2.410000e-80 309.0
9 TraesCS4B01G142100 chr4D 77.250 400 69 18 1388 1776 503802390 503802002 5.400000e-52 215.0
10 TraesCS4B01G142100 chr2D 75.902 610 125 14 1437 2039 125944280 125943686 2.430000e-75 292.0
11 TraesCS4B01G142100 chr7A 84.932 292 38 4 2138 2425 484483449 484483738 8.730000e-75 291.0
12 TraesCS4B01G142100 chr7A 77.064 545 86 33 1514 2036 596000946 596000419 6.800000e-71 278.0
13 TraesCS4B01G142100 chr5D 73.096 617 130 23 1437 2041 261996482 261997074 1.180000e-43 187.0
14 TraesCS4B01G142100 chr5D 74.929 351 77 11 1420 1763 455632217 455631871 1.550000e-32 150.0
15 TraesCS4B01G142100 chr3D 78.498 293 52 9 1483 1770 601943260 601943546 5.480000e-42 182.0
16 TraesCS4B01G142100 chr7D 77.532 316 58 12 1471 1776 519920001 519919689 7.090000e-41 178.0
17 TraesCS4B01G142100 chr7D 74.411 297 63 12 1471 1761 430014687 430014398 5.640000e-22 115.0
18 TraesCS4B01G142100 chr1B 79.412 238 38 7 2143 2370 99689737 99689973 9.240000e-35 158.0
19 TraesCS4B01G142100 chr3B 71.945 581 142 15 1472 2039 493283158 493282586 1.550000e-32 150.0
20 TraesCS4B01G142100 chr3A 97.059 34 1 0 2207 2240 423683129 423683096 9.640000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G142100 chr4B 187435781 187438275 2494 False 4608.0 4608 100.0000 1 2495 1 chr4B.!!$F1 2494
1 TraesCS4B01G142100 chr4A 446946901 446948470 1569 True 1073.5 1696 93.4515 1 1841 2 chr4A.!!$R2 1840
2 TraesCS4B01G142100 chr4A 446770296 446770828 532 True 826.0 826 94.5900 1958 2493 1 chr4A.!!$R1 535
3 TraesCS4B01G142100 chr4D 123090175 123090896 721 True 859.0 859 88.9350 1805 2492 1 chr4D.!!$R1 687
4 TraesCS4B01G142100 chr4D 122761108 122761670 562 False 793.0 793 92.2120 1 560 1 chr4D.!!$F1 559
5 TraesCS4B01G142100 chr4D 49306133 49307382 1249 True 448.5 588 80.2810 833 2039 2 chr4D.!!$R3 1206
6 TraesCS4B01G142100 chr2D 125943686 125944280 594 True 292.0 292 75.9020 1437 2039 1 chr2D.!!$R1 602
7 TraesCS4B01G142100 chr7A 596000419 596000946 527 True 278.0 278 77.0640 1514 2036 1 chr7A.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 631 0.106708 CCCGTATGTGGCACTAGCAT 59.893 55.0 19.83 6.37 44.61 3.79 F
1038 1048 0.105039 GGCTTCCTAGACATGACCCG 59.895 60.0 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1545 0.107654 ATCCTTTGTGTAGCTCCCGC 60.108 55.0 0.0 0.0 0.0 6.13 R
2066 2167 0.698818 ATCTCCTTTGGGTCCGCTTT 59.301 50.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 224 0.735978 CGGCTGTAGCGTGATGTTGA 60.736 55.000 0.00 0.00 43.26 3.18
240 241 0.451383 TGAGCCGTATTGCATTGCAC 59.549 50.000 11.66 0.00 38.71 4.57
286 287 1.135603 TCTGCGCTTGTCATTGCATTC 60.136 47.619 9.73 0.00 36.64 2.67
316 317 8.058328 GCAGAAAATACAAGAAACAAAAAGAGC 58.942 33.333 0.00 0.00 0.00 4.09
335 336 0.873054 CAAGCCTTGCTGTGTCTCTG 59.127 55.000 0.00 0.00 39.62 3.35
337 338 0.250209 AGCCTTGCTGTGTCTCTGTG 60.250 55.000 0.00 0.00 37.57 3.66
345 346 1.600957 CTGTGTCTCTGTGCTTTGTGG 59.399 52.381 0.00 0.00 0.00 4.17
353 354 4.402155 TCTCTGTGCTTTGTGGTCATTTTT 59.598 37.500 0.00 0.00 0.00 1.94
357 358 4.051237 GTGCTTTGTGGTCATTTTTCTCC 58.949 43.478 0.00 0.00 0.00 3.71
389 390 8.996651 TCCTAGAATCTACATACAGAACATGA 57.003 34.615 0.00 0.00 0.00 3.07
392 393 6.821388 AGAATCTACATACAGAACATGACCC 58.179 40.000 0.00 0.00 0.00 4.46
469 470 2.869801 TGTGTCTGTTTGGATTCGTGTC 59.130 45.455 0.00 0.00 0.00 3.67
472 473 2.155155 GTCTGTTTGGATTCGTGTCGAC 59.845 50.000 9.11 9.11 34.89 4.20
486 492 1.194495 GTCGACGACAAGAAACACGT 58.806 50.000 22.66 0.00 41.57 4.49
527 533 2.287308 TGTCCGATTTTTCGTTTGCCAG 60.287 45.455 0.00 0.00 0.00 4.85
552 558 5.332743 ACTCATTTCTGGCCCAAATTTAGA 58.667 37.500 16.30 3.78 0.00 2.10
554 560 5.332743 TCATTTCTGGCCCAAATTTAGACT 58.667 37.500 0.00 0.00 0.00 3.24
568 574 2.010145 TAGACTGAGTTTGCATCCGC 57.990 50.000 0.00 0.00 39.24 5.54
593 599 4.824515 CCCTCGACGCCCTCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
602 608 2.896443 CCCTCTCCTTGTCCTCGC 59.104 66.667 0.00 0.00 0.00 5.03
604 610 2.726351 CCTCTCCTTGTCCTCGCCC 61.726 68.421 0.00 0.00 0.00 6.13
625 631 0.106708 CCCGTATGTGGCACTAGCAT 59.893 55.000 19.83 6.37 44.61 3.79
643 649 1.420514 CATGCCATCACCATCTCTCCT 59.579 52.381 0.00 0.00 0.00 3.69
652 658 3.319405 TCACCATCTCTCCTAATTCGCTC 59.681 47.826 0.00 0.00 0.00 5.03
658 664 5.000012 TCTCTCCTAATTCGCTCTCAAAC 58.000 43.478 0.00 0.00 0.00 2.93
660 666 3.769844 TCTCCTAATTCGCTCTCAAACCT 59.230 43.478 0.00 0.00 0.00 3.50
672 678 1.966451 CAAACCTTTCCGCGCTCCT 60.966 57.895 5.56 0.00 0.00 3.69
747 753 2.919043 GCCATGGTCCCGAGGAAT 59.081 61.111 14.67 0.00 31.38 3.01
748 754 1.227973 GCCATGGTCCCGAGGAATC 60.228 63.158 14.67 0.00 31.38 2.52
750 756 1.069765 CATGGTCCCGAGGAATCCG 59.930 63.158 0.00 0.00 31.38 4.18
774 780 4.771127 GTGCACACCTCGAAGGAA 57.229 55.556 13.17 0.00 37.67 3.36
865 871 4.069232 CGGAGAGCGTTGCCCTCA 62.069 66.667 2.76 0.00 0.00 3.86
933 943 4.421479 CTTCTCGTCGGCACCGCT 62.421 66.667 3.66 0.00 39.59 5.52
934 944 4.717629 TTCTCGTCGGCACCGCTG 62.718 66.667 3.66 0.00 39.59 5.18
957 967 1.671054 CAACACGGGCTCATCGGTT 60.671 57.895 0.00 0.00 0.00 4.44
1032 1042 0.617820 ACGGGTGGCTTCCTAGACAT 60.618 55.000 0.00 0.00 42.67 3.06
1038 1048 0.105039 GGCTTCCTAGACATGACCCG 59.895 60.000 0.00 0.00 0.00 5.28
1041 1051 2.320781 CTTCCTAGACATGACCCGGAT 58.679 52.381 0.73 0.00 0.00 4.18
1053 1063 1.002134 CCCGGATGTGTCCTGCTTT 60.002 57.895 0.73 0.00 42.73 3.51
1062 1072 2.229792 GTGTCCTGCTTTTCCATGTCA 58.770 47.619 0.00 0.00 0.00 3.58
1080 1090 3.203412 CCTCGGGACCTCTCGTCG 61.203 72.222 0.00 0.00 42.99 5.12
1099 1109 2.805671 TCGAAAATGCACGACTTCATGT 59.194 40.909 0.00 0.00 33.62 3.21
1146 1156 0.821517 ATCTCAACGCCACACCGATA 59.178 50.000 0.00 0.00 0.00 2.92
1283 1293 6.089016 ACGACGTACTACAACAATTTCATCAG 59.911 38.462 0.00 0.00 0.00 2.90
1319 1329 1.312815 GGTGGCCAAGAGTATGATGC 58.687 55.000 7.24 0.00 0.00 3.91
1323 1333 1.221414 GCCAAGAGTATGATGCCGAC 58.779 55.000 0.00 0.00 0.00 4.79
1324 1334 1.473257 GCCAAGAGTATGATGCCGACA 60.473 52.381 0.00 0.00 0.00 4.35
1338 1348 1.813513 CCGACAAGACTCAAAGCCAT 58.186 50.000 0.00 0.00 0.00 4.40
1340 1350 2.416747 CGACAAGACTCAAAGCCATGA 58.583 47.619 0.00 0.00 0.00 3.07
1342 1352 3.141398 GACAAGACTCAAAGCCATGACA 58.859 45.455 0.00 0.00 0.00 3.58
1421 1503 7.201652 GGATGAACATTGTTTAAGAGGAGCTAC 60.202 40.741 3.08 0.00 0.00 3.58
1422 1504 6.769512 TGAACATTGTTTAAGAGGAGCTACT 58.230 36.000 0.00 0.00 0.00 2.57
1462 1545 0.951040 GAGGCGACAAAGTGTGAGGG 60.951 60.000 0.00 0.00 0.00 4.30
1549 1635 1.821216 AATCCGACACCGAGCAAAAT 58.179 45.000 0.00 0.00 38.22 1.82
1587 1673 3.231818 AGAGGGTCCATACATACTTCCG 58.768 50.000 0.00 0.00 0.00 4.30
1629 1715 6.428159 GTGTCCTACAAATTTGAGAGTGACAT 59.572 38.462 26.90 11.67 33.56 3.06
1715 1803 4.773674 CCTCTCATGAGAATATCTCTGGCT 59.226 45.833 25.09 0.00 43.73 4.75
1781 1870 4.952335 CCTTCCCTTGTTCATATGAGCTTT 59.048 41.667 18.83 0.00 0.00 3.51
1797 1894 2.017049 GCTTTATGCCATGTCGTCCTT 58.983 47.619 0.00 0.00 35.15 3.36
1872 1969 6.147821 TCAAGCTTTAGAAATCTTCAAGGTCG 59.852 38.462 0.00 0.00 30.34 4.79
1895 1992 1.546923 CATTCAGGCAAGCCATTCACA 59.453 47.619 14.40 0.00 38.92 3.58
1907 2004 3.118665 AGCCATTCACATTTACCCATTGC 60.119 43.478 0.00 0.00 0.00 3.56
1913 2010 2.166254 CACATTTACCCATTGCTGGACC 59.834 50.000 0.00 0.00 46.37 4.46
1922 2019 2.546778 CATTGCTGGACCATGATTTGC 58.453 47.619 0.00 0.00 0.00 3.68
1944 2041 4.253685 CGAGTGCCAAAAGATTAAGGAGA 58.746 43.478 0.00 0.00 0.00 3.71
1953 2050 6.260936 CCAAAAGATTAAGGAGACATATGCGT 59.739 38.462 1.58 0.00 0.00 5.24
1969 2067 3.478857 TGCGTCCTAAAAGAAAGGTGA 57.521 42.857 0.00 0.00 35.48 4.02
2039 2140 3.154827 GGAAGACCAATTCCAAGGTGA 57.845 47.619 0.64 0.00 46.77 4.02
2066 2167 6.483974 TCGACACTTGCCTTCAATAAACTTTA 59.516 34.615 0.00 0.00 0.00 1.85
2115 2216 3.440127 AGAAGAGGGAAGAGAGGAAGTG 58.560 50.000 0.00 0.00 0.00 3.16
2192 2316 3.123621 CACGAGCAAACGAGATAAAGCTT 59.876 43.478 0.00 0.00 37.03 3.74
2270 2394 1.766496 AGAAGGGTTTGGTTCGAGACA 59.234 47.619 0.00 0.00 0.00 3.41
2332 2456 2.290832 TGGCCAAGATGCATGAACTACA 60.291 45.455 0.61 0.00 0.00 2.74
2333 2457 2.754552 GGCCAAGATGCATGAACTACAA 59.245 45.455 2.46 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 224 1.809207 GGTGCAATGCAATACGGCT 59.191 52.632 10.44 0.00 41.47 5.52
240 241 8.623310 AGGTAACGAAAAATAAATTAATGCGG 57.377 30.769 0.00 0.00 46.39 5.69
270 271 2.190161 CATGGAATGCAATGACAAGCG 58.810 47.619 0.00 0.00 37.62 4.68
286 287 7.712264 TTTGTTTCTTGTATTTTCTGCATGG 57.288 32.000 0.00 0.00 0.00 3.66
291 292 9.086336 TGCTCTTTTTGTTTCTTGTATTTTCTG 57.914 29.630 0.00 0.00 0.00 3.02
316 317 0.873054 CAGAGACACAGCAAGGCTTG 59.127 55.000 22.75 22.75 36.40 4.01
333 334 4.685924 AGAAAAATGACCACAAAGCACAG 58.314 39.130 0.00 0.00 0.00 3.66
335 336 4.051237 GGAGAAAAATGACCACAAAGCAC 58.949 43.478 0.00 0.00 0.00 4.40
337 338 4.590850 AGGAGAAAAATGACCACAAAGC 57.409 40.909 0.00 0.00 0.00 3.51
345 346 8.567285 TCTAGGATTCAAAGGAGAAAAATGAC 57.433 34.615 0.00 0.00 0.00 3.06
353 354 8.789767 ATGTAGATTCTAGGATTCAAAGGAGA 57.210 34.615 0.00 0.00 0.00 3.71
375 376 3.782523 AGGATGGGTCATGTTCTGTATGT 59.217 43.478 0.00 0.00 0.00 2.29
383 384 2.450476 GCTTTGAGGATGGGTCATGTT 58.550 47.619 0.00 0.00 0.00 2.71
389 390 1.693640 CCTGGCTTTGAGGATGGGT 59.306 57.895 0.00 0.00 31.48 4.51
392 393 0.324091 AAGGCCTGGCTTTGAGGATG 60.324 55.000 19.68 0.00 31.48 3.51
431 432 1.133025 CACAAGCGGATCAAATGGGTC 59.867 52.381 0.00 0.00 0.00 4.46
469 470 0.228742 CCACGTGTTTCTTGTCGTCG 59.771 55.000 15.65 0.00 34.30 5.12
472 473 1.083657 CGCCACGTGTTTCTTGTCG 60.084 57.895 15.65 2.73 0.00 4.35
473 474 0.042448 GTCGCCACGTGTTTCTTGTC 60.042 55.000 15.65 0.00 0.00 3.18
475 476 1.083657 CGTCGCCACGTGTTTCTTG 60.084 57.895 15.65 0.00 41.42 3.02
509 515 1.268352 TCCTGGCAAACGAAAAATCGG 59.732 47.619 3.12 0.00 37.45 4.18
510 516 2.031157 AGTCCTGGCAAACGAAAAATCG 60.031 45.455 0.00 0.00 39.31 3.34
518 524 2.095567 CAGAAATGAGTCCTGGCAAACG 60.096 50.000 0.00 0.00 0.00 3.60
519 525 2.229784 CCAGAAATGAGTCCTGGCAAAC 59.770 50.000 0.00 0.00 40.69 2.93
521 527 2.205022 CCAGAAATGAGTCCTGGCAA 57.795 50.000 0.00 0.00 40.69 4.52
522 528 3.963733 CCAGAAATGAGTCCTGGCA 57.036 52.632 0.00 0.00 40.69 4.92
527 533 1.923356 TTTGGGCCAGAAATGAGTCC 58.077 50.000 6.23 0.00 0.00 3.85
552 558 2.680913 GCGCGGATGCAAACTCAGT 61.681 57.895 8.83 0.00 42.97 3.41
554 560 3.787676 CGCGCGGATGCAAACTCA 61.788 61.111 24.84 0.00 42.97 3.41
622 628 1.236628 GAGAGATGGTGATGGCATGC 58.763 55.000 9.90 9.90 0.00 4.06
625 631 2.477104 TAGGAGAGATGGTGATGGCA 57.523 50.000 0.00 0.00 0.00 4.92
632 638 3.571590 AGAGCGAATTAGGAGAGATGGT 58.428 45.455 0.00 0.00 0.00 3.55
643 649 3.682858 CGGAAAGGTTTGAGAGCGAATTA 59.317 43.478 0.00 0.00 0.00 1.40
652 658 1.497722 GAGCGCGGAAAGGTTTGAG 59.502 57.895 8.83 0.00 0.00 3.02
660 666 4.408821 ATGGCAGGAGCGCGGAAA 62.409 61.111 8.83 0.00 43.41 3.13
733 739 0.689745 TTCGGATTCCTCGGGACCAT 60.690 55.000 0.30 0.00 0.00 3.55
740 746 1.927895 CACCTTCTTCGGATTCCTCG 58.072 55.000 0.30 0.00 0.00 4.63
747 753 4.771127 GTGTGCACCTTCTTCGGA 57.229 55.556 15.69 0.00 0.00 4.55
767 773 1.762957 TCTAGGCATCCCTTTCCTTCG 59.237 52.381 0.00 0.00 42.87 3.79
944 954 2.745884 TTGCAACCGATGAGCCCG 60.746 61.111 0.00 0.00 0.00 6.13
971 981 2.701606 GCGACGATTCCGAAAGCC 59.298 61.111 0.00 0.00 39.50 4.35
976 986 4.847516 CAGGCGCGACGATTCCGA 62.848 66.667 12.10 0.00 39.50 4.55
1020 1030 0.105039 CCGGGTCATGTCTAGGAAGC 59.895 60.000 0.00 0.00 0.00 3.86
1038 1048 1.909700 TGGAAAAGCAGGACACATCC 58.090 50.000 0.00 0.00 46.69 3.51
1041 1051 2.229792 GACATGGAAAAGCAGGACACA 58.770 47.619 0.00 0.00 0.00 3.72
1053 1063 1.550130 GGTCCCGAGGTGACATGGAA 61.550 60.000 0.00 0.00 34.36 3.53
1062 1072 2.045143 GACGAGAGGTCCCGAGGT 60.045 66.667 0.00 0.00 39.90 3.85
1146 1156 4.431131 CCGGTGGATTGGCTGGCT 62.431 66.667 2.00 0.00 0.00 4.75
1244 1254 2.100797 TCGTGTTATCCGGCGTCG 59.899 61.111 0.29 0.29 0.00 5.12
1283 1293 3.195396 GCCACCCTCATAGATCATCTCTC 59.805 52.174 0.00 0.00 35.28 3.20
1319 1329 1.466167 CATGGCTTTGAGTCTTGTCGG 59.534 52.381 0.00 0.00 0.00 4.79
1323 1333 2.095364 GCTGTCATGGCTTTGAGTCTTG 60.095 50.000 0.00 0.00 0.00 3.02
1324 1334 2.157738 GCTGTCATGGCTTTGAGTCTT 58.842 47.619 0.00 0.00 0.00 3.01
1338 1348 3.939939 TCTTGGCAGCGGCTGTCA 61.940 61.111 31.56 31.56 44.77 3.58
1340 1350 4.254709 TGTCTTGGCAGCGGCTGT 62.255 61.111 28.88 0.00 40.87 4.40
1421 1503 5.472148 TCTTTTGTGCATTGGCTTGATAAG 58.528 37.500 0.00 0.00 41.91 1.73
1422 1504 5.465532 TCTTTTGTGCATTGGCTTGATAA 57.534 34.783 0.00 0.00 41.91 1.75
1462 1545 0.107654 ATCCTTTGTGTAGCTCCCGC 60.108 55.000 0.00 0.00 0.00 6.13
1549 1635 3.640967 CCCTCTTCCAAAATGTTGTTCCA 59.359 43.478 0.00 0.00 32.40 3.53
1587 1673 2.798847 GACACAAACCTCCTACGTTCAC 59.201 50.000 0.00 0.00 0.00 3.18
1629 1715 1.385756 TTGGAGTCACACGTCGGTCA 61.386 55.000 0.00 0.00 0.00 4.02
1781 1870 1.831106 ACAGAAGGACGACATGGCATA 59.169 47.619 0.00 0.00 0.00 3.14
1797 1894 7.012610 CCAACAAGATACATTCATATGCACAGA 59.987 37.037 0.00 0.00 35.03 3.41
1872 1969 2.231964 TGAATGGCTTGCCTGAATGTTC 59.768 45.455 13.18 7.92 0.00 3.18
1895 1992 2.917713 TGGTCCAGCAATGGGTAAAT 57.082 45.000 0.00 0.00 0.00 1.40
1907 2004 1.399440 CACTCGCAAATCATGGTCCAG 59.601 52.381 0.00 0.00 0.00 3.86
1913 2010 2.350899 TTTGGCACTCGCAAATCATG 57.649 45.000 0.00 0.00 41.24 3.07
1922 2019 4.093556 GTCTCCTTAATCTTTTGGCACTCG 59.906 45.833 0.00 0.00 0.00 4.18
1944 2041 5.354234 CACCTTTCTTTTAGGACGCATATGT 59.646 40.000 4.29 0.00 36.58 2.29
1953 2050 4.240323 AGTCCCTCACCTTTCTTTTAGGA 58.760 43.478 0.00 0.00 36.58 2.94
1969 2067 1.697432 TCAACGACCAATGAAGTCCCT 59.303 47.619 0.00 0.00 0.00 4.20
2039 2140 5.473504 AGTTTATTGAAGGCAAGTGTCGAAT 59.526 36.000 0.00 0.00 37.45 3.34
2066 2167 0.698818 ATCTCCTTTGGGTCCGCTTT 59.301 50.000 0.00 0.00 0.00 3.51
2115 2216 2.436521 GCCTCCTCCTTCTCTAGGC 58.563 63.158 0.00 0.00 45.37 3.93
2192 2316 4.018506 TCCACTTTCTTCATGATTAGGGCA 60.019 41.667 0.00 0.00 0.00 5.36
2332 2456 7.063780 CGGTAACAAAATAATCGTGTCTAGGTT 59.936 37.037 0.00 0.00 0.00 3.50
2333 2457 6.532657 CGGTAACAAAATAATCGTGTCTAGGT 59.467 38.462 0.00 0.00 0.00 3.08
2384 2508 7.792374 TCTCCATCATAGTTTTTGCATCTAC 57.208 36.000 0.00 0.00 0.00 2.59
2385 2509 7.994911 ACATCTCCATCATAGTTTTTGCATCTA 59.005 33.333 0.00 0.00 0.00 1.98
2391 2515 8.464404 ACAATCACATCTCCATCATAGTTTTTG 58.536 33.333 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.