>input_sequence_78392
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-------------------------------------------------ATGCCGCCGGCATACGGGTGGCTTCCTAGAC
ATGACCCGGATGTGTCCTGCTTTTCCATGTCACCTCGGGACCTCTCGTCGAAAATGCACGACTTCATGTCGGCCGTCCCC
GTGGTGCCTGCCCTTGATCTCAACGCCACACCGATAGCCAGCCAATCCACCGGGACGCAAAGGGTGCGCCCATGGGCGAT
CCCCATTGACAACTTTCCTGACGCCTCCTTCCTATTCGATGGTATGCCAACACCGACGCCGGATAACACGACGTACTACA
ACAATTTCATCAGAGAGATGATCTATGAGGGTGGCCAAGAGTATGATGCCGACAAGACTCAAAGCCATGACAGCCGCTGC
CAAGACACCCAGGACCACCAAGGC---------------------------------------------CAAGAA-----
--------------------GGACTCGACATCGAGGATGAACATTG--TTTAAGAGGAGCTACTT-ATCAAGCCAATGCA
CAAAAGAGGCGACAAAGTGTGAGGGCGGGAGC-TACACAAAGGATGATGGCAAGTTAA----------------------
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>chr4B_1_TraesCS4B01G142100
CCACGGCAGTACGAGGGCAGGGGGCCCAGCCTCCAGCCCACTACCATCTCCAGCTCGGAGCCGCGGTGGCGGCAGCGACG
CAGGACTGCTCATACTGCCGGGCTTGCGCCATATTCTTCTATACTCGTGTCTGACAGCCATGCTGCTTCTTCCTTTCTAG
TCATATAAATATCAATCATCGCCTCTTAGCTTAGCGCAGACAGGCGGCTGTAGCGTGATGTTGAGCCGTATTGCATTGCA
CCGCATTAATTTATTTTTCGTTACCTTCTGCGCTTGTCATTGCATTCCATGCAGAAAATACAAGAAACAAAAAGAGCAAG
CCTTGCTGTGTCTCTGTGCTTTGTGGTCATTTTTCTCCTTTGAATCCTAGAATCTACATACAGAACATGACCCATCCTCA
AAGCCAGGCCTTAGGTTGACTCCAACAGGGCGACCCATTTGATCCGCTTGTGTCTGTTTGGATTCGTGTCGACGACAAGA
AAC-----ACGTGGCGACGCAAGCTGACGGTTGTCCGATTTTTCGTTTGCCAGGACTCATTTCTGGCCCAAATTTAGACT
GAGTTTGCATCCGCGCGGATGCCCTCGACGCCCTCTCCTTGTCCTCGCCCGCCCGTATGTGGCACTAGCATGCCATCACC
ATCTCTCCTAATTCGCTCTCAAACCTTTCCGCGCTCCTGCCATGGCCGACATGCCCGACCCCGCCACCGCCCCCTTCCCG
GTCATGGCCGCCCACGCCATGGTCCCGAGGAATCCGAAGAAGGTGCACACCTCGAAGGAAAGGGATGCCTAGAGCAAGGA
CGTGGAGAAAAAAGAAGCCGCCGCCGTAGGCGCTTCGGCCCAGGTCGCTGCTGCGGAGAGCGTTGCCCTCATCGCCAAGG
CCACGCAACAGGTCCTCCTGTCA----GGGTACCAAGAGCCGACCCTTCTCGTCGGCACCGCTGCCGCCAACACGGGCTC
ATCGGTTGCAAGCCCGCCCAGGCTTTCGGAATCGTCGCGCCTGTCAACAATGCCGCCGGCATACGGGTGGCTTCCTAGAC
ATGACCCGGATGTGTCCTGCTTTTCCATGTCACCTCGGGACCTCTCGTCGAAAATGCACGACTTCATGTCGGCCGTCCCC
GTGGTGCCTGCCCTTGATCTCAACGCCACACCGATAGCCAGCCAATCCACCGGGACGCAAAGGGTGCGCCCATGGGCGAT
CCCCATTGACAACTTTCCTGACGCCTCCTTCCTATTCGATGGTATGCCAACACCGACGCCGGATAACACGACGTACTACA
ACAATTTCATCAGAGAGATGATCTATGAGGGTGGCCAAGAGTATGATGCCGACAAGACTCAAAGCCATGACAGCCGCTGC
CAAGACACCCAGGACCACCAAGGC---------------------------------------------CAAGAA-----
--------------------GGACTCGACATCGAGGATGAACATTG--TTTAAGAGGAGCTACTT-ATCAAGCCAATGCA
CAAAAGAGGCGACAAAGTGTGAGGGCGGGAGC-TACACAAAGGATGATGGCAAGTTAATTTGCGAA-CTTGGATGGCAAT
TGGACAAGATCCCAAATCCGACACCGAGC-AAAATGGAACAACATTTTGGAAGAGGGTCCATACATACTTCCGTGAACGT
AGGAGGTTTGTGTCCTACAAATTTGAGAGTGACATGACCGACGTGTGACTCC--AAAAGAGGCGGGCTTTCATCCAATTG
GAGTGCAACAAGTTTTATGCCTCTCATGAGAATATCTCTGGCTGGACCGTGAGCGTTCTTGACATCAAAGACATGGTATA
CAATTCCTTCCC-TTGTTCATATGAGCTTTATGCCATG-TCGTC-------CTTCTGTGCATATGAATGTATCTTGTTGG
TTTGAACTCCATATGTAGGTGTTTCAAGCTTTAGAAATCTTCAAGGTCGAACATTCAGGCAAGCCATTCACATTTACCCA
TTGCTGGACCATGATTTGCGAGTGCCAAAAGATTAAGGAGACATATGCGTCCTAAAAGAAAGGT-GAGGGACTTCATT--
-GGTCGTTGAGCCAAGTGAAAGTGAGAAGCGGTCGAGAGGGAAGACCAATTCCAAGGTGATTCGACACTTGCCTTCAATA
AACTTTAAAGCGGACCCAAAGGAGATGGCAATTGAGAAGAGGGAAGAGAGGAAGTGCCTAGAGAAGGAGGAGGCAAGGAA
-----------------------GGCTCAAGATTGGTGAGACCAATGCCCGGTCACGAGCAAACGAGATAAAGCTTGCCC
TAATCATGAAGAAAGTGGAGATCATGGCGGCCGACATGTGCAAGACCCCAAGAAGAAGGGTTTGGTTCGAGACAAAGCAG
AAGGAGATGCTCGAGCTAGATGCGTGATCATGTTTGGCCAAGATGCATGAACTACAACCTAGACACGATTATTTTGTTAC
CGACATGAATTCTATCTTTATTTTGCAGTAGATGCAAAAACTATGATGGAGATGTGATTGTTTTGTATCC----------
--TGGCATGAATTCTAGCTTTAAATGTGCAATCTAGCTATGTTTTCATGATCAAAATATGTTTGTTTGAA
>chr4A_1
CCACGGCAGTACGAGGGCAGGGGGGCCAGCCTCCAGCCCACTACCATCTCCAGCTCGGAGCCGCGGTGGCGGCAGCGACG
GAGGACTGCTCATACTGCCGGGCTTGCGCCATATTCTTCTATACTCGTGTCTGACAGCCATGCTGCTTCTTCCTTTCTAG
TCATATAAATATCAATCATCGCCTCTTAGCTTAGCGCACACAGGCGGCTGTAGCGTGATGTTGGGCCGTCTTGCATTGCA
TCGCATTAATTTATTTTTCGTTCTCTTC----------------------------------------------------
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-----------------------------------------------------GACTCATTTTTGGCCCAAATTTAGGCC
GAGTTTGCATCCGTGCGGATGCCCTCGACGCCCTCTCCCTGTCCTCGTCTGCCCGTATGTGGCACTACCACGCCATCGCC
ATCTCTCCCAATTCGCTGTCAAATCCTTCCGCGCTCCCGCCCTCT-CGACATGCCCGACCCCGCCATCGCCCCCTTCCCA
GTCATGGCCGCCCACGCCGTGGTCCTGAGGAAGTCAAAGAAGGTGCACACCTTGAAGTAGAGGGATGCCTAGAGCAAG--
-GTGGAGAAAAAAGAAGCCGCCGTTGCAGGCGCTTCGGCCCAGGTCGCTGCTGCGGAGAGCGTTGCCCTCGCCGCCAAGG
CCACGCAACAGGTCCTTCTGTCA----GGGTACCAAGAGCCGACGCTTCTCGTCACCACCGCCACCGCCAACATGGGCTC
ATCGGTGGCAAGCCCGCCCATGCTTCCGGAATCGTCGCGCCTGTCAATAATGCCGCCGGCATACGGGTGCCTTCCTAGGC
ACGACCCAGAGGTGTCCTACTTCTCCATGTCGCCTCGGGACCTCTCACCAAAAATGCACGACTTCGTGCCGGCTGTCCCA
GTGGTGCCTGCCCTTGATCTCAACGCCACACCGATGGCCAGCCAATCCACCA-GACGCGAAGGGAGCGCCCATGGGCGAT
CCCCATTGACAACTTTCCTGACGCCTCCTTCCTATTCGATGGT--GCCGACACTGGCGCCGGATAACACGACGTACTACA
ACAATTTCATCGAAGAGATGATCTATGAGGGTGGCCAAGACGA------------------------------CCGCTGC
CAAGACACCCAGGGCCACCACGGC---------------------------------------------CAAGAAACTCG
AGACCAAGGCAACCAAGGTAGGAGTCAACATCGAGGATGAACATTG--TTTAAGAGGAGCTATCTCATCAAGCCAATGCA
CAAAAGAGGCGACAAATTGTGAGGACGGGAGC-TACACAAAGGATGATGGCAAGTTAATTTGCGAA-CTTGGATGGCAAT
TGTACAAGATCCCAAATCCGACACCAAGC-AAAAGGAAACAACATTTTGAAAGAGGGTCCATACATACTTCCATGAACGT
AGGAGGTTTATGTCCTACAAATTTGAGAGTGACAGGACCGACGTGTGACTCC--GAAAGAGACGAGCTTTCATTCAATTG
GAGTGCAACAAGTTTTATGCCTCTCATGAGAATATCTCTGGTCGTACTGTGAGCGTTCTTGACATCGAAGACATGGTATA
CAATTCCTTCCC-TTGTTCATATGAGCTTGATGCCATG-TCGTC-------CTCCTGTGCATATGAATGTATCTTGTTGG
TTTGAACTCCATATGTA---------------------------------------------------------------
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>chr4D_1
CCACGGCAGTACGAGGGCAGGGGCGCCAGCCTCCAGCCCACTACCATCTCCAGCTCGGAGCCGCGGTGGCGGCAGCGACG
CAGGACTGCTCATACTGCCGGGCTTGCGCCATATTCTTCTATACTCGTGTCTGACAGCCATGCTGCTTCTTCCTTTCTAG
TCATATAAATATCGATAATCGCCTCTTAGCTTAGCGCAGACAGGCGGCTGTAGCGTGATGTTGGGCCGTATTGCGTTGCA
TCGCATTAATTTATTTTTCGTTACCTTCTGTGCTTGTCATTGCATT-CATGTAGAAAATACAAGAAACAAAAAGAGGAAG
CCTTGCTGTGTCTGTCTACTTTGTGATCATTTTGCTCGTTTGAATCCTAGAATCTGCATACAGGACATGGCCGATCCTCA
AAGCCAGGCCTTAGGTTGACTCCAACAGGGCCACCCATTTGATCCGCTTGTGTCTGTTTGGATTCGTGTGGATAAGAAAC
ATGGCCCAACGCGGCGACGCAAGCGGACGGTTGTTTGATTTTTGTTCA-CCAAGACTCATTTCTGACCCAAATTTAGGCC
GAGTT---------------------------------------------------------------------------
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>chr4D_833
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-------------------------------------GCCCAGGCCGCTGTTGTGGAGAGCAAGGCCCTCGTCGCCAAGT
ACACTCAGCATGCCCTCCTGTTGCTGGGGGTACCAAGAATCGACCCTTCTGTGATG----------GCCACCAGGGGCTC
GTTAGCAGCCTGCCCGCCCAAGCTTCTGGAGTCGCTGCGCATTTCAACAACACCGTCGGCATATGGGTACCTTCCCGGAC
ACGATCCAACCACAACCTGCTTCTCCACGCCGCCTCGGGGCGGCTCGTCCGAAATGGGTGACTTCGTGCCGGTCGTCCCC
GTGGTGCCTGCCCTTGATCTCAACGCCACACTCGTGGCTTGCCAGTCCACCGGGACACAAAGGAAGCGTCCGCAGGCGAT
CCCCATGGGCAACTTTCCCGATGCCCGCATCCTATTTGATGGTATGCCGACCCTGACGCTGGACGACTCAACGTACTGCA
ACGATTTCACTAAGGAGATGATTTATGAGGGTGGCCAAGAGTATGATGTCGAGTAGACTCAAAGCCAAGTCGGTCGCGGC
CAAGACACCCATGACCACCAAGGTGAAGTTACCCAAGGCCAAGAAACTCAAGAGCAAGGCAACCAACAGCAAGAT-----
--------------------AGAGTTGACATCGACGATGAGCCATTGTTTCACGAGGAGCTATCTCATCAAGCCAATGCA
CAAAAGATGCGACAAAGCGTGAGGATGGGAGGATACACAAAGGATGAGGATAAGTTAATTTGCGAAGCTTGGATGACAAT
TGGACAAGATCGCAAAACTAGTGCCGAGCAAAAG-GGATTAACATTTTGGAAGCAGGTCCATACATACTTCCATGAGCGT
AGAAGGTTTGCGCCCTACAAATTTGGGAGTGACCCTGGTGACGTGTCACTCC--AAAATAGGTGGACCTTCATCCAATTG
GAGGGCAACATATTTTGTGGCTCACATGAGAATATCTCCGGCCGGCCA-TGAGTGGCCTTGGCAACAAAGACATGGTATA
CAATTCCTCCCC-TTGTTCATACGAGCTTGATGCCATGGTCGTC-------CTCCTATGCATATGA----ATCTGGTTAG
TATCAATTCAATATGTAGCTGCTTCAAGCTTTGGAAATCTTCAAGGTTCAACATGCGCGTAAGCCATTCAACTTGACCCA
TTGTTGGACGATCATTTGATAGTGCCAAAAGTTTAAAGAACAATATGTGGCCCAAAAGAAAGAT-GGTGGCCCCTCATCG
GGGTCGTTGAGCCAAGTGAAAGTGAGAAGCGGTTGAGGGGGAAGACCAATTCCAAGGTG---------------------
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>chr2D_1437
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------------------------------------------------------------------------------CA
CAAAACAGGAGGAAAAGCATGAGGACGGGAGCATACACGAAGGATGAGGACAAGTTGATGTGCGATGCTTGGATGAAAAT
TGGACAAGATCCCAAACCCGATGCCAAGCAAAAAAGGAACAACAATTTGGAAGAGGTTTCATGATTACCGCCATGAACAT
GGGAAGTTTGAACCCGACAAATTTGAGAATGATCGGACCGATGTGTCAGTCCA-AAAAGAGGTGGGGCTTCAACCAATTA
GAGTGTAACAAAGTGTG-----CTCATGAGAATGTCAAAGGCCGGCCCGTGAGT-GCCTTAGGATCAAATACATGGTATA
CAGTTCATTCCC-TTGTTCATAAAGAAT-------ATA-TCATC-------CTCATACGCATATGAATGCATCTTGTTGG
TTTCATCTTTATATGTAGGCATTTCAAGCCTTGGATACTTTCAAGGTCCAAAATGTGGGCAAGCCATTCACCATGAGCCA
TTGTTGGAGGAAAACCAAGGATTGCCCAAATTTAAAGGACCGATATGCGGCCTAGAAAAAGGTAGGGGGGCCTTCATC--
-GATCGCCAACCCAAGTGAAAGCGAGAAAATGTCGAGAGGGAAGACCAATTCCAAGGTG---------------------
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>chr7A_1514
AATTG---------------------------------------------------------------------------
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---ACAAGATACCAAGATGGGTGCCGAGCAAAAAATGTACAACATTTTGGATGAGGGTCCATATATACTTCCATGAACGT
AGGAAGTTCGAGCCCTACAAGTTTGAGAGTAACCATGGCGATGTGTCGATCCAAAAGAGAGGTGGGCCTTCATCCAACTA
TAGTGCAACAAGTTTTGTGCCACCCTTGAGAACATCATCGGCCGTGTCGTGAGTGGCCTAAGCATCAAAGACATGGTATA
CAATTCCTTCCCCTTGTTCATATGTGTGTGTCTTGTTGTTTGATGCTTTCTCTCCATTACATATGAATGTATATTGTTGC
TTTCATCTTCAAGTGTAGGCATTCCAATATTTGGAGACCTTCAAGGCCCAACATGGCAACAAGCCATTCACCTTGACCCA
TTGTTGGCCAATGATTTGTGAGTGCCCAAAGATTAAGGAGCAATATGTCACACAAAAGAAAGGT-GGGGGGTCATTGGCA
T--TCGTTGAGCCAAGTGAGAAGAAACCAA-------GGGGAAGACCAACTCCAAG------------------------
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>chr4D_1805
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------------------------------------------------------------ATATGAATGTATCTTGTTAG
TTTGA-CTCCATATGTAGGTGTTTCAAGCTTTATAAATCTTCAAGGTCCAACATTCAGGCAAGCCATTCACCTTTACCCA
TTGTTGGACGATGATTTGTGAGTGCCAAAAGTTTAAGGAGCCATATGCGGCCCGAAAGAAAGGT-GGGGGACCTCATC--
-GGTCGTTGAGCCAAGTGAAAGTGAGAAGCGGTCGAGAGGGAAGACCAATTCCAAGGTCCTTCGACACTTGCCTTCAATA
AACATTGAAGGGGACTCAAAGGAGATGGCAATTGAGAAGAGGGAAGAGAGGAAGCACCGAGAGAAGGAGGAGTCAAGGAA
GACCTTTGACATACAAAAGAAAAGGCTCAATATCGGTGAGACCAATGCCCGGTCATGAGCAAACGAAATAAAGCTCGCCC
TAATCATGAAGAAAGTGGAGATCATGGCGACCGACATGTGCAAGACCCCAAGAAGAAAGGTTTGGTTCGAGATGAAGCAG
AAGGAGATGCTCGAGCTAGATGTGTGATCATGTTCGGCCAAGATGCATGAACTACGGTCTAGACACGATTATTTTGTTAT
CGACATGAATTCTATCTTTATTTTGCAAGAGATGGAAAAACTATGGTGGATATGTGATTATTTTGTATGCTGGCATGAAT
GTTGGCATGAATTCTAGCTTTAAATGTGCAATCTAGCTATGTTTTCATGATCAAAATATGTTTGTTT---
>chr4A_1958
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-----------------------------------------------------AAAAGAAAGGT-GGGGGACTTCATC--
-GATCGTTGAGCCAAGTGAAAGTGAGAAGCGGTCGAGAGGGAAGACCAATTCCAAGGTGCTTCGACACTTACCTTCAATA
AACTTTGAAGCGGACCCAAAGGAGATGGCAATT---AAGAGGGAAGAGAGGAAGTTCCTAGAGAAGGAGGAGGCAAGGAA
-----------------------GGCTCAAGTTTGGTGAGACCAATGCCCGGTCACGATCAAACGAGATAAAGCTCGCCC
TAATCATGAAGAAAGTGGAGATCATGGTGGCCGACATGTGCAAGACCCCAAGAAGAAGGGTTTTGTTTAAGACGAAGCAG
AAGGAGATGCTCGAGCTAGATGCGTGATCATAATTGGCCAAGATGCATGAACTACGTCCTAGACACGATTATTTTGTTAC
CGACATGAATTTTATCTTTATTTTGCAAGAGATGAAAAAACTATGATGGAGATGTGATTGTTTTGTAGCC----------
--TGGCATGAATTCTAGCTTTAAATGTGCAATCCAGCAATGTTTTCATGATCAAAATATGTTTGTTTG--
>SNPs
------------------------S-------------------------------------------------------
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---------------------------------------------------------------S----------------
S-----------------------------S---------------S----S------------------------S---
-------------S-S-S-------S-------S---S-----------------S-------S-----S--S-------
-------------------------------S-------------------------------------S--SS-S--SS
-SS--------S------------S---------SS-------SS-SSS---S------------------------S-S
-------------S------------------------S--------S-S-----------------S--S------S--
--------S--------S-----S-S-----------S---S-SSS--------------------S------------S
------------------S------S------SS-S----------------S----S-S------------------SS
S----------------------SS-S-------------------------------------------S---------
------------------------------------------------------S-------SS---------S------
------S-------------S----S-------------------------------------------S----------
-S-----S--S-----------S--------S-----------------S---------------S--S-----------
-----------------------------------S----------------------------S---------------
------------------------------------------------S----S--------------------------
------------S-----------------------------------S---SS-------------S-S-S--------
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-----------------------S--------------------------------------SS----------------
------------------------S-------------------------------------------------------
----------------------------------S-------------------------------------S-------
----------------------------------S---------------------------------------------
------------------------------------------S-------------------------------------
-----------------------------S-----------------------S--------------------------
------------------------------------------------S----------------------S--------
---S-----S--------S---------------------S--------S----------------S-------------
-----------------------------------------------------------S--------------------
------S------------------------------------------------S------------------------
---------------------------------------------------------------------------S----
-------------------------------------------------------------------------S------
-------------------------------------------------------SS-----------------------
---------------------------SS-----S---------------------------------------------
--------------------------------------------------------------------SS
>forward_631
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---------------------------------------------------CCCGTATGTGGCACTAGCAT---------
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>reverse_1545
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------------------------GCGGGAGCTACACAAAGGAT------------------------------------
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>forward_1048
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--------------------------------------------------------------------GGCTTCCTAGAC
ATGACCCG------------------------------------------------------------------------
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>reverse_2167
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------AAAGCGGACCCAAAGGAGAT------------------------------------------------------
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