Multiple sequence alignment - TraesCS4B01G135500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G135500 chr4B 100.000 1788 0 0 549 2336 177862342 177860555 0.000000e+00 3302.0
1 TraesCS4B01G135500 chr4B 100.000 283 0 0 1 283 177862890 177862608 7.400000e-145 523.0
2 TraesCS4B01G135500 chr4D 93.541 1641 51 18 720 2336 116153985 116152376 0.000000e+00 2392.0
3 TraesCS4B01G135500 chr4A 94.889 1487 48 19 698 2163 460448595 460450074 0.000000e+00 2300.0
4 TraesCS4B01G135500 chr5D 86.472 377 34 7 972 1338 249981047 249981416 4.680000e-107 398.0
5 TraesCS4B01G135500 chr5A 86.649 367 36 6 979 1338 332719483 332719843 6.050000e-106 394.0
6 TraesCS4B01G135500 chr5A 93.478 46 3 0 2213 2258 55159019 55159064 4.170000e-08 69.4
7 TraesCS4B01G135500 chr5A 92.000 50 2 2 2212 2260 421833723 421833771 4.170000e-08 69.4
8 TraesCS4B01G135500 chr5A 100.000 28 0 0 2121 2148 102479571 102479544 4.000000e-03 52.8
9 TraesCS4B01G135500 chr5B 86.096 374 41 8 972 1338 282847330 282847699 2.180000e-105 392.0
10 TraesCS4B01G135500 chr2A 82.520 246 32 5 27 271 589771323 589771088 3.040000e-49 206.0
11 TraesCS4B01G135500 chr2A 86.765 68 7 2 2196 2261 715944071 715944004 8.950000e-10 75.0
12 TraesCS4B01G135500 chr2A 92.308 52 3 1 2211 2261 195072287 195072236 3.220000e-09 73.1
13 TraesCS4B01G135500 chr2A 91.837 49 4 0 2213 2261 615347682 615347634 4.170000e-08 69.4
14 TraesCS4B01G135500 chr2B 87.654 162 16 2 34 195 63259136 63258979 3.960000e-43 185.0
15 TraesCS4B01G135500 chr2B 93.878 49 3 0 2213 2261 106758054 106758102 8.950000e-10 75.0
16 TraesCS4B01G135500 chr7D 86.869 99 9 3 599 695 535569882 535569978 8.830000e-20 108.0
17 TraesCS4B01G135500 chr7B 93.750 48 1 2 2214 2260 426971424 426971378 1.160000e-08 71.3
18 TraesCS4B01G135500 chr1A 87.500 64 4 3 31 90 338212438 338212501 1.160000e-08 71.3
19 TraesCS4B01G135500 chr6B 90.196 51 5 0 2213 2263 700090433 700090383 1.500000e-07 67.6
20 TraesCS4B01G135500 chr7A 100.000 28 0 0 2121 2148 463395610 463395583 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G135500 chr4B 177860555 177862890 2335 True 1912.5 3302 100.000 1 2336 2 chr4B.!!$R1 2335
1 TraesCS4B01G135500 chr4D 116152376 116153985 1609 True 2392.0 2392 93.541 720 2336 1 chr4D.!!$R1 1616
2 TraesCS4B01G135500 chr4A 460448595 460450074 1479 False 2300.0 2300 94.889 698 2163 1 chr4A.!!$F1 1465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 619 0.035458 AGAGAGAAAAGCGGTGGGTG 59.965 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 2098 0.030638 CTTGTGGTTTTGCGACAGGG 59.969 55.0 0.0 0.0 37.14 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.698855 TTGAGGGATAAGACAGCAGC 57.301 50.000 0.00 0.00 0.00 5.25
35 36 1.571955 TGAGGGATAAGACAGCAGCA 58.428 50.000 0.00 0.00 0.00 4.41
36 37 1.483827 TGAGGGATAAGACAGCAGCAG 59.516 52.381 0.00 0.00 0.00 4.24
37 38 0.179936 AGGGATAAGACAGCAGCAGC 59.820 55.000 0.00 0.00 42.56 5.25
47 48 3.804193 GCAGCAGCTAACCCACGC 61.804 66.667 0.00 0.00 37.91 5.34
48 49 2.358615 CAGCAGCTAACCCACGCA 60.359 61.111 0.00 0.00 0.00 5.24
49 50 1.965930 CAGCAGCTAACCCACGCAA 60.966 57.895 0.00 0.00 0.00 4.85
51 52 2.870372 CAGCTAACCCACGCAAGC 59.130 61.111 0.00 0.00 45.62 4.01
52 53 2.742372 AGCTAACCCACGCAAGCG 60.742 61.111 13.50 13.50 46.03 4.68
53 54 4.460873 GCTAACCCACGCAAGCGC 62.461 66.667 15.09 0.00 44.19 5.92
54 55 2.742372 CTAACCCACGCAAGCGCT 60.742 61.111 15.09 2.64 44.19 5.92
55 56 1.447140 CTAACCCACGCAAGCGCTA 60.447 57.895 12.05 0.00 44.19 4.26
56 57 1.004799 TAACCCACGCAAGCGCTAA 60.005 52.632 12.05 0.00 44.19 3.09
57 58 0.391927 TAACCCACGCAAGCGCTAAT 60.392 50.000 12.05 0.00 44.19 1.73
58 59 1.922135 AACCCACGCAAGCGCTAATG 61.922 55.000 12.05 7.73 44.19 1.90
59 60 2.106074 CCCACGCAAGCGCTAATGA 61.106 57.895 12.05 0.00 44.19 2.57
60 61 1.060937 CCACGCAAGCGCTAATGAC 59.939 57.895 12.05 1.82 44.19 3.06
61 62 1.296145 CACGCAAGCGCTAATGACG 60.296 57.895 12.05 16.18 44.19 4.35
62 63 2.321060 CGCAAGCGCTAATGACGG 59.679 61.111 12.05 0.00 35.30 4.79
63 64 2.709475 GCAAGCGCTAATGACGGG 59.291 61.111 12.05 0.00 34.30 5.28
64 65 1.813753 GCAAGCGCTAATGACGGGA 60.814 57.895 12.05 0.00 34.30 5.14
65 66 1.766143 GCAAGCGCTAATGACGGGAG 61.766 60.000 12.05 0.00 34.30 4.30
66 67 0.179111 CAAGCGCTAATGACGGGAGA 60.179 55.000 12.05 0.00 0.00 3.71
67 68 0.753262 AAGCGCTAATGACGGGAGAT 59.247 50.000 12.05 0.00 0.00 2.75
68 69 1.617322 AGCGCTAATGACGGGAGATA 58.383 50.000 8.99 0.00 0.00 1.98
69 70 1.961394 AGCGCTAATGACGGGAGATAA 59.039 47.619 8.99 0.00 0.00 1.75
70 71 2.563179 AGCGCTAATGACGGGAGATAAT 59.437 45.455 8.99 0.00 0.00 1.28
71 72 3.006967 AGCGCTAATGACGGGAGATAATT 59.993 43.478 8.99 0.00 0.00 1.40
72 73 3.368236 GCGCTAATGACGGGAGATAATTC 59.632 47.826 0.00 0.00 0.00 2.17
73 74 3.927142 CGCTAATGACGGGAGATAATTCC 59.073 47.826 0.00 0.00 36.46 3.01
74 75 4.560716 CGCTAATGACGGGAGATAATTCCA 60.561 45.833 0.00 0.00 39.09 3.53
75 76 4.932200 GCTAATGACGGGAGATAATTCCAG 59.068 45.833 0.00 0.00 39.09 3.86
76 77 2.910688 TGACGGGAGATAATTCCAGC 57.089 50.000 0.00 0.00 39.09 4.85
77 78 1.068588 TGACGGGAGATAATTCCAGCG 59.931 52.381 0.00 0.00 39.09 5.18
78 79 0.249911 ACGGGAGATAATTCCAGCGC 60.250 55.000 0.00 0.00 39.09 5.92
79 80 0.951040 CGGGAGATAATTCCAGCGCC 60.951 60.000 2.29 0.00 39.09 6.53
80 81 0.606673 GGGAGATAATTCCAGCGCCC 60.607 60.000 2.29 0.00 39.09 6.13
81 82 0.108585 GGAGATAATTCCAGCGCCCA 59.891 55.000 2.29 0.00 37.20 5.36
82 83 1.517242 GAGATAATTCCAGCGCCCAG 58.483 55.000 2.29 0.00 0.00 4.45
83 84 0.109342 AGATAATTCCAGCGCCCAGG 59.891 55.000 2.29 3.87 0.00 4.45
84 85 0.108585 GATAATTCCAGCGCCCAGGA 59.891 55.000 2.29 6.78 0.00 3.86
85 86 0.109342 ATAATTCCAGCGCCCAGGAG 59.891 55.000 2.29 0.00 34.91 3.69
86 87 0.980754 TAATTCCAGCGCCCAGGAGA 60.981 55.000 2.29 1.40 34.91 3.71
87 88 2.543067 AATTCCAGCGCCCAGGAGAC 62.543 60.000 2.29 0.00 34.91 3.36
88 89 4.704103 TCCAGCGCCCAGGAGACT 62.704 66.667 2.29 0.00 46.44 3.24
89 90 3.710722 CCAGCGCCCAGGAGACTT 61.711 66.667 2.29 0.00 40.21 3.01
90 91 2.348998 CAGCGCCCAGGAGACTTT 59.651 61.111 2.29 0.00 40.21 2.66
91 92 1.302832 CAGCGCCCAGGAGACTTTT 60.303 57.895 2.29 0.00 40.21 2.27
92 93 0.890996 CAGCGCCCAGGAGACTTTTT 60.891 55.000 2.29 0.00 40.21 1.94
93 94 0.690762 AGCGCCCAGGAGACTTTTTA 59.309 50.000 2.29 0.00 40.21 1.52
94 95 1.087501 GCGCCCAGGAGACTTTTTAG 58.912 55.000 0.00 0.00 40.21 1.85
95 96 1.087501 CGCCCAGGAGACTTTTTAGC 58.912 55.000 0.00 0.00 40.21 3.09
96 97 1.087501 GCCCAGGAGACTTTTTAGCG 58.912 55.000 0.00 0.00 40.21 4.26
97 98 1.739067 CCCAGGAGACTTTTTAGCGG 58.261 55.000 0.00 0.00 40.21 5.52
98 99 1.278127 CCCAGGAGACTTTTTAGCGGA 59.722 52.381 0.00 0.00 40.21 5.54
99 100 2.347731 CCAGGAGACTTTTTAGCGGAC 58.652 52.381 0.00 0.00 40.21 4.79
100 101 2.289444 CCAGGAGACTTTTTAGCGGACA 60.289 50.000 0.00 0.00 40.21 4.02
101 102 2.737252 CAGGAGACTTTTTAGCGGACAC 59.263 50.000 0.00 0.00 40.21 3.67
102 103 2.074576 GGAGACTTTTTAGCGGACACC 58.925 52.381 0.00 0.00 0.00 4.16
103 104 5.718919 AGGAGACTTTTTAGCGGACACCG 62.719 52.174 5.79 5.79 45.44 4.94
106 107 2.740447 GACTTTTTAGCGGACACCGATT 59.260 45.455 14.43 3.91 45.97 3.34
107 108 2.482721 ACTTTTTAGCGGACACCGATTG 59.517 45.455 14.43 0.20 45.97 2.67
108 109 0.800012 TTTTAGCGGACACCGATTGC 59.200 50.000 14.43 0.00 45.97 3.56
109 110 1.022451 TTTAGCGGACACCGATTGCC 61.022 55.000 14.43 0.00 45.97 4.52
110 111 2.862674 TTAGCGGACACCGATTGCCC 62.863 60.000 14.43 0.00 45.97 5.36
113 114 4.337013 GGACACCGATTGCCCAAT 57.663 55.556 0.00 0.00 0.00 3.16
114 115 2.106844 GGACACCGATTGCCCAATC 58.893 57.895 10.26 10.26 42.76 2.67
115 116 0.394352 GGACACCGATTGCCCAATCT 60.394 55.000 16.39 0.91 43.71 2.40
116 117 0.734889 GACACCGATTGCCCAATCTG 59.265 55.000 16.39 13.10 43.71 2.90
117 118 0.680921 ACACCGATTGCCCAATCTGG 60.681 55.000 20.19 20.19 43.71 3.86
124 125 4.118584 GCCCAATCTGGCCTTGTT 57.881 55.556 3.32 0.00 46.11 2.83
125 126 3.281332 GCCCAATCTGGCCTTGTTA 57.719 52.632 3.32 0.00 46.11 2.41
126 127 1.780503 GCCCAATCTGGCCTTGTTAT 58.219 50.000 3.32 0.00 46.11 1.89
127 128 1.410153 GCCCAATCTGGCCTTGTTATG 59.590 52.381 3.32 0.00 46.11 1.90
128 129 2.034124 CCCAATCTGGCCTTGTTATGG 58.966 52.381 3.32 5.10 35.79 2.74
129 130 2.358090 CCCAATCTGGCCTTGTTATGGA 60.358 50.000 3.32 0.00 35.79 3.41
130 131 2.689983 CCAATCTGGCCTTGTTATGGAC 59.310 50.000 3.32 0.00 0.00 4.02
131 132 3.624777 CAATCTGGCCTTGTTATGGACT 58.375 45.455 3.32 0.00 32.71 3.85
132 133 4.019174 CAATCTGGCCTTGTTATGGACTT 58.981 43.478 3.32 0.00 32.71 3.01
133 134 3.071874 TCTGGCCTTGTTATGGACTTG 57.928 47.619 3.32 0.00 32.71 3.16
134 135 2.642311 TCTGGCCTTGTTATGGACTTGA 59.358 45.455 3.32 0.00 32.71 3.02
135 136 3.073798 TCTGGCCTTGTTATGGACTTGAA 59.926 43.478 3.32 0.00 32.71 2.69
136 137 3.826157 CTGGCCTTGTTATGGACTTGAAA 59.174 43.478 3.32 0.00 32.71 2.69
137 138 4.219115 TGGCCTTGTTATGGACTTGAAAA 58.781 39.130 3.32 0.00 32.71 2.29
138 139 4.038642 TGGCCTTGTTATGGACTTGAAAAC 59.961 41.667 3.32 0.00 32.71 2.43
139 140 4.556233 GCCTTGTTATGGACTTGAAAACC 58.444 43.478 0.00 0.00 0.00 3.27
140 141 4.560716 GCCTTGTTATGGACTTGAAAACCC 60.561 45.833 0.00 0.00 0.00 4.11
141 142 4.586841 CCTTGTTATGGACTTGAAAACCCA 59.413 41.667 0.00 0.00 0.00 4.51
142 143 5.508994 CCTTGTTATGGACTTGAAAACCCAC 60.509 44.000 0.00 0.00 0.00 4.61
143 144 3.566322 TGTTATGGACTTGAAAACCCACG 59.434 43.478 0.00 0.00 0.00 4.94
144 145 0.958822 ATGGACTTGAAAACCCACGC 59.041 50.000 0.00 0.00 0.00 5.34
145 146 0.394488 TGGACTTGAAAACCCACGCA 60.394 50.000 0.00 0.00 0.00 5.24
146 147 0.741915 GGACTTGAAAACCCACGCAA 59.258 50.000 0.00 0.00 0.00 4.85
147 148 1.269051 GGACTTGAAAACCCACGCAAG 60.269 52.381 0.00 0.00 42.46 4.01
148 149 0.102300 ACTTGAAAACCCACGCAAGC 59.898 50.000 0.00 0.00 40.94 4.01
149 150 0.934436 CTTGAAAACCCACGCAAGCG 60.934 55.000 13.50 13.50 46.03 4.68
150 151 2.729491 GAAAACCCACGCAAGCGC 60.729 61.111 15.09 0.00 44.19 5.92
151 152 3.194272 GAAAACCCACGCAAGCGCT 62.194 57.895 15.09 2.64 44.19 5.92
152 153 1.847890 GAAAACCCACGCAAGCGCTA 61.848 55.000 12.05 0.00 44.19 4.26
153 154 1.448922 AAAACCCACGCAAGCGCTAA 61.449 50.000 12.05 0.00 44.19 3.09
154 155 1.241315 AAACCCACGCAAGCGCTAAT 61.241 50.000 12.05 0.00 44.19 1.73
155 156 1.922135 AACCCACGCAAGCGCTAATG 61.922 55.000 12.05 7.73 44.19 1.90
156 157 2.106074 CCCACGCAAGCGCTAATGA 61.106 57.895 12.05 0.00 44.19 2.57
157 158 1.060937 CCACGCAAGCGCTAATGAC 59.939 57.895 12.05 1.82 44.19 3.06
158 159 1.296145 CACGCAAGCGCTAATGACG 60.296 57.895 12.05 16.18 44.19 4.35
159 160 2.321060 CGCAAGCGCTAATGACGG 59.679 61.111 12.05 0.00 35.30 4.79
160 161 2.709475 GCAAGCGCTAATGACGGG 59.291 61.111 12.05 0.00 34.30 5.28
161 162 2.709475 CAAGCGCTAATGACGGGC 59.291 61.111 12.05 0.00 40.23 6.13
163 164 2.584608 AGCGCTAATGACGGGCTT 59.415 55.556 8.99 0.00 46.76 4.35
164 165 1.078426 AGCGCTAATGACGGGCTTT 60.078 52.632 8.99 0.00 46.76 3.51
165 166 1.090052 AGCGCTAATGACGGGCTTTC 61.090 55.000 8.99 0.00 46.76 2.62
166 167 1.090052 GCGCTAATGACGGGCTTTCT 61.090 55.000 0.00 0.00 37.36 2.52
167 168 0.931005 CGCTAATGACGGGCTTTCTC 59.069 55.000 0.00 0.00 0.00 2.87
168 169 1.739035 CGCTAATGACGGGCTTTCTCA 60.739 52.381 0.00 0.00 0.00 3.27
169 170 2.565841 GCTAATGACGGGCTTTCTCAT 58.434 47.619 0.00 0.00 0.00 2.90
170 171 2.289002 GCTAATGACGGGCTTTCTCATG 59.711 50.000 0.00 0.00 0.00 3.07
171 172 1.755179 AATGACGGGCTTTCTCATGG 58.245 50.000 0.00 0.00 0.00 3.66
172 173 0.107017 ATGACGGGCTTTCTCATGGG 60.107 55.000 0.00 0.00 0.00 4.00
173 174 2.044946 ACGGGCTTTCTCATGGGC 60.045 61.111 0.00 0.00 0.00 5.36
174 175 2.830370 CGGGCTTTCTCATGGGCC 60.830 66.667 0.00 0.00 43.42 5.80
175 176 2.685999 GGGCTTTCTCATGGGCCT 59.314 61.111 4.53 0.00 43.62 5.19
176 177 1.000866 GGGCTTTCTCATGGGCCTT 59.999 57.895 4.53 0.00 43.62 4.35
177 178 0.615827 GGGCTTTCTCATGGGCCTTT 60.616 55.000 4.53 0.00 43.62 3.11
178 179 1.269958 GGCTTTCTCATGGGCCTTTT 58.730 50.000 4.53 0.00 41.20 2.27
179 180 1.625315 GGCTTTCTCATGGGCCTTTTT 59.375 47.619 4.53 0.00 41.20 1.94
180 181 2.831526 GGCTTTCTCATGGGCCTTTTTA 59.168 45.455 4.53 0.00 41.20 1.52
181 182 3.118992 GGCTTTCTCATGGGCCTTTTTAG 60.119 47.826 4.53 0.00 41.20 1.85
182 183 3.677148 GCTTTCTCATGGGCCTTTTTAGC 60.677 47.826 4.53 1.48 0.00 3.09
183 184 3.456380 TTCTCATGGGCCTTTTTAGCT 57.544 42.857 4.53 0.00 0.00 3.32
184 185 3.456380 TCTCATGGGCCTTTTTAGCTT 57.544 42.857 4.53 0.00 0.00 3.74
185 186 3.778265 TCTCATGGGCCTTTTTAGCTTT 58.222 40.909 4.53 0.00 0.00 3.51
186 187 3.763897 TCTCATGGGCCTTTTTAGCTTTC 59.236 43.478 4.53 0.00 0.00 2.62
187 188 2.491693 TCATGGGCCTTTTTAGCTTTCG 59.508 45.455 4.53 0.00 0.00 3.46
188 189 1.989706 TGGGCCTTTTTAGCTTTCGT 58.010 45.000 4.53 0.00 0.00 3.85
189 190 3.143211 TGGGCCTTTTTAGCTTTCGTA 57.857 42.857 4.53 0.00 0.00 3.43
190 191 3.078837 TGGGCCTTTTTAGCTTTCGTAG 58.921 45.455 4.53 0.00 0.00 3.51
191 192 3.244630 TGGGCCTTTTTAGCTTTCGTAGA 60.245 43.478 4.53 0.00 0.00 2.59
192 193 3.374367 GGGCCTTTTTAGCTTTCGTAGAG 59.626 47.826 0.84 0.00 38.43 2.43
193 194 4.001652 GGCCTTTTTAGCTTTCGTAGAGT 58.998 43.478 0.00 0.00 38.43 3.24
194 195 4.454847 GGCCTTTTTAGCTTTCGTAGAGTT 59.545 41.667 0.00 0.00 38.43 3.01
195 196 5.390673 GGCCTTTTTAGCTTTCGTAGAGTTC 60.391 44.000 0.00 0.00 38.43 3.01
196 197 5.178809 GCCTTTTTAGCTTTCGTAGAGTTCA 59.821 40.000 0.00 0.00 38.43 3.18
197 198 6.293244 GCCTTTTTAGCTTTCGTAGAGTTCAA 60.293 38.462 0.00 0.00 38.43 2.69
198 199 7.291567 CCTTTTTAGCTTTCGTAGAGTTCAAG 58.708 38.462 0.00 0.00 38.43 3.02
199 200 7.041984 CCTTTTTAGCTTTCGTAGAGTTCAAGT 60.042 37.037 0.00 0.00 38.43 3.16
200 201 7.781548 TTTTAGCTTTCGTAGAGTTCAAGTT 57.218 32.000 0.00 0.00 38.43 2.66
201 202 8.876275 TTTTAGCTTTCGTAGAGTTCAAGTTA 57.124 30.769 0.00 0.00 38.43 2.24
202 203 8.876275 TTTAGCTTTCGTAGAGTTCAAGTTAA 57.124 30.769 0.00 0.00 38.43 2.01
203 204 8.516811 TTAGCTTTCGTAGAGTTCAAGTTAAG 57.483 34.615 0.00 0.00 38.43 1.85
204 205 6.514063 AGCTTTCGTAGAGTTCAAGTTAAGT 58.486 36.000 0.00 0.00 38.43 2.24
205 206 6.421202 AGCTTTCGTAGAGTTCAAGTTAAGTG 59.579 38.462 0.00 0.00 38.43 3.16
206 207 6.420008 GCTTTCGTAGAGTTCAAGTTAAGTGA 59.580 38.462 0.00 0.00 38.43 3.41
207 208 7.116519 GCTTTCGTAGAGTTCAAGTTAAGTGAT 59.883 37.037 0.00 0.00 38.43 3.06
208 209 9.622004 CTTTCGTAGAGTTCAAGTTAAGTGATA 57.378 33.333 0.00 0.00 38.43 2.15
209 210 9.622004 TTTCGTAGAGTTCAAGTTAAGTGATAG 57.378 33.333 0.00 0.00 38.43 2.08
210 211 7.759465 TCGTAGAGTTCAAGTTAAGTGATAGG 58.241 38.462 0.00 0.00 0.00 2.57
211 212 6.973474 CGTAGAGTTCAAGTTAAGTGATAGGG 59.027 42.308 0.00 0.00 0.00 3.53
212 213 6.301169 AGAGTTCAAGTTAAGTGATAGGGG 57.699 41.667 0.00 0.00 0.00 4.79
213 214 5.189934 AGAGTTCAAGTTAAGTGATAGGGGG 59.810 44.000 0.00 0.00 0.00 5.40
227 228 2.998949 GGGGGCCAGGTACTTCTG 59.001 66.667 4.39 0.00 34.60 3.02
228 229 1.923909 GGGGGCCAGGTACTTCTGT 60.924 63.158 4.39 0.00 34.60 3.41
229 230 0.619543 GGGGGCCAGGTACTTCTGTA 60.620 60.000 4.39 0.00 34.60 2.74
230 231 1.282382 GGGGCCAGGTACTTCTGTAA 58.718 55.000 4.39 0.00 34.60 2.41
231 232 1.844497 GGGGCCAGGTACTTCTGTAAT 59.156 52.381 4.39 0.00 34.60 1.89
232 233 2.421529 GGGGCCAGGTACTTCTGTAATG 60.422 54.545 4.39 0.00 34.60 1.90
233 234 2.289565 GGCCAGGTACTTCTGTAATGC 58.710 52.381 0.00 0.00 34.60 3.56
234 235 2.355716 GGCCAGGTACTTCTGTAATGCA 60.356 50.000 0.00 0.00 34.60 3.96
235 236 3.343617 GCCAGGTACTTCTGTAATGCAA 58.656 45.455 0.00 0.00 34.60 4.08
236 237 3.947834 GCCAGGTACTTCTGTAATGCAAT 59.052 43.478 0.00 0.00 34.60 3.56
237 238 4.035675 GCCAGGTACTTCTGTAATGCAATC 59.964 45.833 0.00 0.00 34.60 2.67
238 239 4.271049 CCAGGTACTTCTGTAATGCAATCG 59.729 45.833 0.00 0.00 34.60 3.34
239 240 3.871594 AGGTACTTCTGTAATGCAATCGC 59.128 43.478 0.00 0.00 27.25 4.58
252 253 4.747540 TGCAATCGCATCGCTAATTTAT 57.252 36.364 0.00 0.00 45.36 1.40
253 254 4.465921 TGCAATCGCATCGCTAATTTATG 58.534 39.130 0.00 0.00 45.36 1.90
254 255 4.213059 TGCAATCGCATCGCTAATTTATGA 59.787 37.500 0.00 0.00 45.36 2.15
255 256 4.785055 GCAATCGCATCGCTAATTTATGAG 59.215 41.667 0.00 0.00 38.36 2.90
256 257 5.615544 GCAATCGCATCGCTAATTTATGAGT 60.616 40.000 0.00 0.00 38.36 3.41
257 258 6.401047 GCAATCGCATCGCTAATTTATGAGTA 60.401 38.462 0.00 0.00 38.36 2.59
258 259 6.633668 ATCGCATCGCTAATTTATGAGTAC 57.366 37.500 0.00 0.00 0.00 2.73
259 260 5.525199 TCGCATCGCTAATTTATGAGTACA 58.475 37.500 0.00 0.00 0.00 2.90
260 261 5.401376 TCGCATCGCTAATTTATGAGTACAC 59.599 40.000 0.00 0.00 0.00 2.90
261 262 5.174943 CGCATCGCTAATTTATGAGTACACA 59.825 40.000 0.00 0.00 0.00 3.72
262 263 6.128822 CGCATCGCTAATTTATGAGTACACAT 60.129 38.462 10.71 10.71 0.00 3.21
263 264 7.011773 GCATCGCTAATTTATGAGTACACATG 58.988 38.462 15.13 0.00 0.00 3.21
264 265 7.307396 GCATCGCTAATTTATGAGTACACATGT 60.307 37.037 15.13 0.00 0.00 3.21
265 266 9.191995 CATCGCTAATTTATGAGTACACATGTA 57.808 33.333 15.13 4.25 0.00 2.29
266 267 9.758651 ATCGCTAATTTATGAGTACACATGTAA 57.241 29.630 15.13 9.74 31.52 2.41
267 268 9.027129 TCGCTAATTTATGAGTACACATGTAAC 57.973 33.333 15.13 0.00 31.52 2.50
268 269 7.996551 CGCTAATTTATGAGTACACATGTAACG 59.003 37.037 15.13 6.72 31.52 3.18
269 270 8.814235 GCTAATTTATGAGTACACATGTAACGT 58.186 33.333 15.13 0.00 31.52 3.99
272 273 7.585286 TTTATGAGTACACATGTAACGTTCC 57.415 36.000 15.13 0.00 31.52 3.62
273 274 4.587584 TGAGTACACATGTAACGTTCCA 57.412 40.909 2.82 0.00 31.52 3.53
274 275 5.142061 TGAGTACACATGTAACGTTCCAT 57.858 39.130 2.82 1.08 31.52 3.41
275 276 5.165676 TGAGTACACATGTAACGTTCCATC 58.834 41.667 2.82 0.00 31.52 3.51
276 277 4.171005 AGTACACATGTAACGTTCCATCG 58.829 43.478 2.82 0.94 31.52 3.84
277 278 3.306917 ACACATGTAACGTTCCATCGA 57.693 42.857 2.82 0.00 34.70 3.59
278 279 3.857052 ACACATGTAACGTTCCATCGAT 58.143 40.909 2.82 0.00 34.70 3.59
279 280 3.863424 ACACATGTAACGTTCCATCGATC 59.137 43.478 2.82 0.00 34.70 3.69
280 281 3.061205 CACATGTAACGTTCCATCGATCG 60.061 47.826 9.36 9.36 37.26 3.69
281 282 2.925578 TGTAACGTTCCATCGATCGT 57.074 45.000 15.94 4.23 44.29 3.73
566 567 1.860078 GGAGTGTGCGAGGAAAACG 59.140 57.895 0.00 0.00 0.00 3.60
567 568 0.599204 GGAGTGTGCGAGGAAAACGA 60.599 55.000 0.00 0.00 0.00 3.85
568 569 1.429463 GAGTGTGCGAGGAAAACGAT 58.571 50.000 0.00 0.00 0.00 3.73
569 570 1.126846 GAGTGTGCGAGGAAAACGATG 59.873 52.381 0.00 0.00 0.00 3.84
570 571 0.165944 GTGTGCGAGGAAAACGATGG 59.834 55.000 0.00 0.00 0.00 3.51
571 572 0.250124 TGTGCGAGGAAAACGATGGT 60.250 50.000 0.00 0.00 0.00 3.55
572 573 0.165944 GTGCGAGGAAAACGATGGTG 59.834 55.000 0.00 0.00 0.00 4.17
573 574 0.250124 TGCGAGGAAAACGATGGTGT 60.250 50.000 0.00 0.00 0.00 4.16
574 575 1.001068 TGCGAGGAAAACGATGGTGTA 59.999 47.619 0.00 0.00 0.00 2.90
575 576 1.659098 GCGAGGAAAACGATGGTGTAG 59.341 52.381 0.00 0.00 0.00 2.74
576 577 2.929592 GCGAGGAAAACGATGGTGTAGT 60.930 50.000 0.00 0.00 0.00 2.73
577 578 3.323243 CGAGGAAAACGATGGTGTAGTT 58.677 45.455 0.00 0.00 0.00 2.24
578 579 3.122948 CGAGGAAAACGATGGTGTAGTTG 59.877 47.826 0.00 0.00 0.00 3.16
579 580 4.062991 GAGGAAAACGATGGTGTAGTTGT 58.937 43.478 0.00 0.00 0.00 3.32
580 581 4.457466 AGGAAAACGATGGTGTAGTTGTT 58.543 39.130 0.00 0.00 0.00 2.83
581 582 4.274950 AGGAAAACGATGGTGTAGTTGTTG 59.725 41.667 0.00 0.00 0.00 3.33
582 583 4.533222 GAAAACGATGGTGTAGTTGTTGG 58.467 43.478 0.00 0.00 0.00 3.77
583 584 3.478857 AACGATGGTGTAGTTGTTGGA 57.521 42.857 0.00 0.00 0.00 3.53
584 585 3.040147 ACGATGGTGTAGTTGTTGGAG 57.960 47.619 0.00 0.00 0.00 3.86
585 586 2.631062 ACGATGGTGTAGTTGTTGGAGA 59.369 45.455 0.00 0.00 0.00 3.71
586 587 3.070446 ACGATGGTGTAGTTGTTGGAGAA 59.930 43.478 0.00 0.00 0.00 2.87
587 588 3.679980 CGATGGTGTAGTTGTTGGAGAAG 59.320 47.826 0.00 0.00 0.00 2.85
588 589 4.560716 CGATGGTGTAGTTGTTGGAGAAGA 60.561 45.833 0.00 0.00 0.00 2.87
589 590 4.974645 TGGTGTAGTTGTTGGAGAAGAT 57.025 40.909 0.00 0.00 0.00 2.40
590 591 6.620877 ATGGTGTAGTTGTTGGAGAAGATA 57.379 37.500 0.00 0.00 0.00 1.98
591 592 6.428083 TGGTGTAGTTGTTGGAGAAGATAA 57.572 37.500 0.00 0.00 0.00 1.75
592 593 6.464222 TGGTGTAGTTGTTGGAGAAGATAAG 58.536 40.000 0.00 0.00 0.00 1.73
593 594 6.269077 TGGTGTAGTTGTTGGAGAAGATAAGA 59.731 38.462 0.00 0.00 0.00 2.10
594 595 7.038302 TGGTGTAGTTGTTGGAGAAGATAAGAT 60.038 37.037 0.00 0.00 0.00 2.40
595 596 7.824779 GGTGTAGTTGTTGGAGAAGATAAGATT 59.175 37.037 0.00 0.00 0.00 2.40
596 597 8.660373 GTGTAGTTGTTGGAGAAGATAAGATTG 58.340 37.037 0.00 0.00 0.00 2.67
597 598 8.593679 TGTAGTTGTTGGAGAAGATAAGATTGA 58.406 33.333 0.00 0.00 0.00 2.57
598 599 9.092876 GTAGTTGTTGGAGAAGATAAGATTGAG 57.907 37.037 0.00 0.00 0.00 3.02
599 600 7.911651 AGTTGTTGGAGAAGATAAGATTGAGA 58.088 34.615 0.00 0.00 0.00 3.27
600 601 8.040132 AGTTGTTGGAGAAGATAAGATTGAGAG 58.960 37.037 0.00 0.00 0.00 3.20
601 602 7.724490 TGTTGGAGAAGATAAGATTGAGAGA 57.276 36.000 0.00 0.00 0.00 3.10
602 603 7.780064 TGTTGGAGAAGATAAGATTGAGAGAG 58.220 38.462 0.00 0.00 0.00 3.20
603 604 7.617329 TGTTGGAGAAGATAAGATTGAGAGAGA 59.383 37.037 0.00 0.00 0.00 3.10
604 605 7.822161 TGGAGAAGATAAGATTGAGAGAGAG 57.178 40.000 0.00 0.00 0.00 3.20
605 606 7.581814 TGGAGAAGATAAGATTGAGAGAGAGA 58.418 38.462 0.00 0.00 0.00 3.10
606 607 8.058235 TGGAGAAGATAAGATTGAGAGAGAGAA 58.942 37.037 0.00 0.00 0.00 2.87
607 608 8.912988 GGAGAAGATAAGATTGAGAGAGAGAAA 58.087 37.037 0.00 0.00 0.00 2.52
610 611 8.947055 AAGATAAGATTGAGAGAGAGAAAAGC 57.053 34.615 0.00 0.00 0.00 3.51
611 612 7.202526 AGATAAGATTGAGAGAGAGAAAAGCG 58.797 38.462 0.00 0.00 0.00 4.68
612 613 4.122143 AGATTGAGAGAGAGAAAAGCGG 57.878 45.455 0.00 0.00 0.00 5.52
613 614 3.513515 AGATTGAGAGAGAGAAAAGCGGT 59.486 43.478 0.00 0.00 0.00 5.68
614 615 2.732412 TGAGAGAGAGAAAAGCGGTG 57.268 50.000 0.00 0.00 0.00 4.94
615 616 1.273606 TGAGAGAGAGAAAAGCGGTGG 59.726 52.381 0.00 0.00 0.00 4.61
616 617 0.610687 AGAGAGAGAAAAGCGGTGGG 59.389 55.000 0.00 0.00 0.00 4.61
617 618 0.321996 GAGAGAGAAAAGCGGTGGGT 59.678 55.000 0.00 0.00 0.00 4.51
618 619 0.035458 AGAGAGAAAAGCGGTGGGTG 59.965 55.000 0.00 0.00 0.00 4.61
619 620 0.955919 GAGAGAAAAGCGGTGGGTGG 60.956 60.000 0.00 0.00 0.00 4.61
620 621 1.971695 GAGAAAAGCGGTGGGTGGG 60.972 63.158 0.00 0.00 0.00 4.61
621 622 2.203437 GAAAAGCGGTGGGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
622 623 1.830847 GAAAAGCGGTGGGTGGGTT 60.831 57.895 0.00 0.00 0.00 4.11
623 624 1.802337 GAAAAGCGGTGGGTGGGTTC 61.802 60.000 0.00 0.00 0.00 3.62
624 625 2.575455 AAAAGCGGTGGGTGGGTTCA 62.575 55.000 0.00 0.00 0.00 3.18
625 626 2.575455 AAAGCGGTGGGTGGGTTCAA 62.575 55.000 0.00 0.00 0.00 2.69
626 627 2.519780 GCGGTGGGTGGGTTCAAA 60.520 61.111 0.00 0.00 0.00 2.69
627 628 2.561037 GCGGTGGGTGGGTTCAAAG 61.561 63.158 0.00 0.00 0.00 2.77
628 629 1.901464 CGGTGGGTGGGTTCAAAGG 60.901 63.158 0.00 0.00 0.00 3.11
629 630 1.539665 GGTGGGTGGGTTCAAAGGA 59.460 57.895 0.00 0.00 0.00 3.36
630 631 0.826256 GGTGGGTGGGTTCAAAGGAC 60.826 60.000 0.00 0.00 0.00 3.85
631 632 0.106419 GTGGGTGGGTTCAAAGGACA 60.106 55.000 0.00 0.00 0.00 4.02
632 633 0.106419 TGGGTGGGTTCAAAGGACAC 60.106 55.000 0.00 0.00 0.00 3.67
633 634 1.170290 GGGTGGGTTCAAAGGACACG 61.170 60.000 0.00 0.00 33.07 4.49
634 635 0.464916 GGTGGGTTCAAAGGACACGT 60.465 55.000 0.00 0.00 33.07 4.49
635 636 0.661020 GTGGGTTCAAAGGACACGTG 59.339 55.000 15.48 15.48 0.00 4.49
636 637 0.464735 TGGGTTCAAAGGACACGTGG 60.465 55.000 21.57 0.08 0.00 4.94
637 638 1.652563 GGTTCAAAGGACACGTGGC 59.347 57.895 21.57 18.48 0.00 5.01
638 639 1.098712 GGTTCAAAGGACACGTGGCA 61.099 55.000 25.47 0.00 0.00 4.92
639 640 0.951558 GTTCAAAGGACACGTGGCAT 59.048 50.000 25.47 15.05 0.00 4.40
640 641 0.950836 TTCAAAGGACACGTGGCATG 59.049 50.000 25.47 18.40 0.00 4.06
641 642 0.107643 TCAAAGGACACGTGGCATGA 59.892 50.000 25.47 20.43 0.00 3.07
642 643 0.518636 CAAAGGACACGTGGCATGAG 59.481 55.000 25.47 8.81 0.00 2.90
643 644 0.396435 AAAGGACACGTGGCATGAGA 59.604 50.000 25.47 0.00 0.00 3.27
644 645 0.036952 AAGGACACGTGGCATGAGAG 60.037 55.000 25.47 5.42 0.00 3.20
645 646 0.900182 AGGACACGTGGCATGAGAGA 60.900 55.000 25.47 0.00 0.00 3.10
646 647 0.037326 GGACACGTGGCATGAGAGAA 60.037 55.000 25.47 0.00 0.00 2.87
647 648 1.608025 GGACACGTGGCATGAGAGAAA 60.608 52.381 25.47 0.00 0.00 2.52
648 649 1.728971 GACACGTGGCATGAGAGAAAG 59.271 52.381 18.77 0.00 0.00 2.62
649 650 1.344438 ACACGTGGCATGAGAGAAAGA 59.656 47.619 21.57 0.00 0.00 2.52
650 651 1.728971 CACGTGGCATGAGAGAAAGAC 59.271 52.381 14.82 0.00 0.00 3.01
651 652 0.994995 CGTGGCATGAGAGAAAGACG 59.005 55.000 0.00 0.00 0.00 4.18
652 653 1.402852 CGTGGCATGAGAGAAAGACGA 60.403 52.381 0.00 0.00 0.00 4.20
653 654 1.996191 GTGGCATGAGAGAAAGACGAC 59.004 52.381 0.00 0.00 0.00 4.34
654 655 1.895798 TGGCATGAGAGAAAGACGACT 59.104 47.619 0.00 0.00 0.00 4.18
655 656 2.300152 TGGCATGAGAGAAAGACGACTT 59.700 45.455 0.00 0.00 38.05 3.01
656 657 3.509967 TGGCATGAGAGAAAGACGACTTA 59.490 43.478 0.00 0.00 35.05 2.24
657 658 3.860536 GGCATGAGAGAAAGACGACTTAC 59.139 47.826 0.00 0.00 35.05 2.34
672 673 4.012319 GACTTACGTGTCGCTCTTATCA 57.988 45.455 0.00 0.00 0.00 2.15
673 674 4.017380 ACTTACGTGTCGCTCTTATCAG 57.983 45.455 0.00 0.00 0.00 2.90
674 675 2.470196 TACGTGTCGCTCTTATCAGC 57.530 50.000 0.00 0.00 35.90 4.26
675 676 0.179134 ACGTGTCGCTCTTATCAGCC 60.179 55.000 0.00 0.00 35.84 4.85
676 677 1.202973 CGTGTCGCTCTTATCAGCCG 61.203 60.000 0.00 0.00 35.84 5.52
677 678 0.872021 GTGTCGCTCTTATCAGCCGG 60.872 60.000 0.00 0.00 35.84 6.13
678 679 1.320344 TGTCGCTCTTATCAGCCGGT 61.320 55.000 1.90 0.00 35.84 5.28
679 680 0.179108 GTCGCTCTTATCAGCCGGTT 60.179 55.000 1.90 0.00 35.84 4.44
680 681 0.179111 TCGCTCTTATCAGCCGGTTG 60.179 55.000 12.81 12.81 35.84 3.77
681 682 0.179111 CGCTCTTATCAGCCGGTTGA 60.179 55.000 23.98 23.98 35.84 3.18
682 683 1.739035 CGCTCTTATCAGCCGGTTGAA 60.739 52.381 25.48 8.84 35.84 2.69
683 684 2.356135 GCTCTTATCAGCCGGTTGAAA 58.644 47.619 25.48 17.69 32.76 2.69
684 685 2.747446 GCTCTTATCAGCCGGTTGAAAA 59.253 45.455 25.48 13.49 32.76 2.29
685 686 3.378427 GCTCTTATCAGCCGGTTGAAAAT 59.622 43.478 25.48 11.54 32.76 1.82
686 687 4.574828 GCTCTTATCAGCCGGTTGAAAATA 59.425 41.667 25.48 10.46 32.76 1.40
687 688 5.065988 GCTCTTATCAGCCGGTTGAAAATAA 59.934 40.000 25.48 17.06 32.76 1.40
688 689 6.404293 GCTCTTATCAGCCGGTTGAAAATAAA 60.404 38.462 25.48 12.73 32.76 1.40
689 690 6.848451 TCTTATCAGCCGGTTGAAAATAAAC 58.152 36.000 25.48 0.00 0.00 2.01
690 691 3.546002 TCAGCCGGTTGAAAATAAACG 57.454 42.857 19.64 0.00 40.29 3.60
691 692 3.139850 TCAGCCGGTTGAAAATAAACGA 58.860 40.909 19.64 0.00 43.10 3.85
692 693 3.754323 TCAGCCGGTTGAAAATAAACGAT 59.246 39.130 19.64 0.00 43.10 3.73
693 694 4.216687 TCAGCCGGTTGAAAATAAACGATT 59.783 37.500 19.64 0.00 43.10 3.34
694 695 4.920927 CAGCCGGTTGAAAATAAACGATTT 59.079 37.500 13.89 0.00 43.10 2.17
712 713 7.992180 ACGATTTTCTTTCATAAATGATGGC 57.008 32.000 0.00 0.00 36.56 4.40
1358 1367 0.109913 ACCCGGTTCCTGTTTCTTCC 59.890 55.000 0.00 0.00 0.00 3.46
1469 1478 6.405538 ACATGTTTAATTATGGTGCCCTTTG 58.594 36.000 0.00 0.00 0.00 2.77
1520 1529 1.533625 TGTGGCTAATCACTTGTGCC 58.466 50.000 0.00 0.00 43.49 5.01
1548 1557 8.506437 GTCAATTGAAATCATCAGAAGTGTGTA 58.494 33.333 10.35 0.00 39.77 2.90
1644 1653 9.520204 TCATACGTTGCTTAATTAAGTACCTAC 57.480 33.333 22.94 14.25 35.75 3.18
1645 1654 9.525409 CATACGTTGCTTAATTAAGTACCTACT 57.475 33.333 22.94 9.19 38.39 2.57
1704 1713 2.076863 GAACTGGATGTTTCTGTCGGG 58.923 52.381 0.00 0.00 39.30 5.14
1715 1724 2.973694 TCTGTCGGGTAATTAGGCAC 57.026 50.000 0.00 0.00 0.00 5.01
1718 1727 2.696707 CTGTCGGGTAATTAGGCACCTA 59.303 50.000 0.00 0.00 35.04 3.08
1719 1728 2.431782 TGTCGGGTAATTAGGCACCTAC 59.568 50.000 0.00 0.00 35.04 3.18
1721 1730 3.891366 GTCGGGTAATTAGGCACCTACTA 59.109 47.826 0.00 0.00 35.04 1.82
1722 1731 4.525874 GTCGGGTAATTAGGCACCTACTAT 59.474 45.833 0.00 0.00 35.04 2.12
1724 1733 5.244626 TCGGGTAATTAGGCACCTACTATTC 59.755 44.000 0.00 0.00 35.04 1.75
1871 1890 4.843516 TGGCCTTTTATGGTGGAAATTCTT 59.156 37.500 3.32 0.00 0.00 2.52
1956 1977 4.090354 GCAATTCGCTAGTGTTGTAACGTA 59.910 41.667 2.66 0.00 37.77 3.57
1963 1984 5.453587 CGCTAGTGTTGTAACGTATAAGACC 59.546 44.000 0.00 0.00 0.00 3.85
2074 2096 3.244526 ACCTTGGATTGTTGAATTTGCCC 60.245 43.478 0.00 0.00 0.00 5.36
2076 2098 3.399440 TGGATTGTTGAATTTGCCCAC 57.601 42.857 0.00 0.00 0.00 4.61
2114 2136 7.342026 ACCACAAGTTACCTTTGAAAAAGAGAT 59.658 33.333 1.31 0.00 0.00 2.75
2138 2160 2.497675 CCTAGAGGCTAGAGTTTGTGCA 59.502 50.000 0.00 0.00 0.00 4.57
2155 2177 3.501828 TGTGCAATGTAACTAACTGGCAG 59.498 43.478 14.16 14.16 0.00 4.85
2184 2212 7.678947 ATTTACAAGAACAAGAGATGTCTGG 57.321 36.000 0.00 0.00 42.99 3.86
2196 2224 3.964031 GAGATGTCTGGTATTCCCTCTGT 59.036 47.826 0.00 0.00 0.00 3.41
2203 2231 2.990284 TGGTATTCCCTCTGTCCCAAAA 59.010 45.455 0.00 0.00 0.00 2.44
2212 2240 5.311121 TCCCTCTGTCCCAAAATAAGTGTTA 59.689 40.000 0.00 0.00 0.00 2.41
2261 2289 9.169592 CTTATTTTGAAACGGAGGGAGTATTAA 57.830 33.333 0.00 0.00 0.00 1.40
2292 2320 9.256477 CTTTTTAAATGGAGGTTAGGTTTGTTC 57.744 33.333 0.00 0.00 0.00 3.18
2320 2348 0.341961 TCCATAGTGGCCCAGGTACT 59.658 55.000 0.00 0.00 37.47 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.758554 GCTGCTGTCTTATCCCTCAAAAA 59.241 43.478 0.00 0.00 0.00 1.94
13 14 3.244875 TGCTGCTGTCTTATCCCTCAAAA 60.245 43.478 0.00 0.00 0.00 2.44
14 15 2.305635 TGCTGCTGTCTTATCCCTCAAA 59.694 45.455 0.00 0.00 0.00 2.69
15 16 1.908619 TGCTGCTGTCTTATCCCTCAA 59.091 47.619 0.00 0.00 0.00 3.02
16 17 1.483827 CTGCTGCTGTCTTATCCCTCA 59.516 52.381 0.00 0.00 0.00 3.86
17 18 1.809651 GCTGCTGCTGTCTTATCCCTC 60.810 57.143 8.53 0.00 36.03 4.30
18 19 0.179936 GCTGCTGCTGTCTTATCCCT 59.820 55.000 8.53 0.00 36.03 4.20
19 20 2.700329 GCTGCTGCTGTCTTATCCC 58.300 57.895 8.53 0.00 36.03 3.85
30 31 3.804193 GCGTGGGTTAGCTGCTGC 61.804 66.667 13.43 7.62 40.05 5.25
31 32 1.915614 CTTGCGTGGGTTAGCTGCTG 61.916 60.000 13.43 0.00 0.00 4.41
32 33 1.672356 CTTGCGTGGGTTAGCTGCT 60.672 57.895 7.57 7.57 0.00 4.24
33 34 2.870372 CTTGCGTGGGTTAGCTGC 59.130 61.111 0.00 0.00 0.00 5.25
34 35 2.870372 GCTTGCGTGGGTTAGCTG 59.130 61.111 0.00 0.00 0.00 4.24
35 36 2.742372 CGCTTGCGTGGGTTAGCT 60.742 61.111 6.86 0.00 0.00 3.32
36 37 4.460873 GCGCTTGCGTGGGTTAGC 62.461 66.667 16.38 0.00 0.00 3.09
37 38 1.017177 TTAGCGCTTGCGTGGGTTAG 61.017 55.000 18.68 0.00 45.69 2.34
38 39 0.391927 ATTAGCGCTTGCGTGGGTTA 60.392 50.000 18.68 0.00 45.69 2.85
39 40 1.674322 ATTAGCGCTTGCGTGGGTT 60.674 52.632 18.68 0.00 45.69 4.11
40 41 2.046314 ATTAGCGCTTGCGTGGGT 60.046 55.556 18.68 0.00 45.69 4.51
41 42 2.106074 TCATTAGCGCTTGCGTGGG 61.106 57.895 18.68 0.00 45.69 4.61
42 43 1.060937 GTCATTAGCGCTTGCGTGG 59.939 57.895 18.68 0.00 45.69 4.94
43 44 1.296145 CGTCATTAGCGCTTGCGTG 60.296 57.895 18.68 9.97 45.69 5.34
44 45 2.452813 CCGTCATTAGCGCTTGCGT 61.453 57.895 18.68 0.00 45.69 5.24
45 46 2.321060 CCGTCATTAGCGCTTGCG 59.679 61.111 18.68 15.98 45.69 4.85
46 47 1.766143 CTCCCGTCATTAGCGCTTGC 61.766 60.000 18.68 4.34 39.58 4.01
47 48 0.179111 TCTCCCGTCATTAGCGCTTG 60.179 55.000 18.68 9.48 0.00 4.01
48 49 0.753262 ATCTCCCGTCATTAGCGCTT 59.247 50.000 18.68 0.00 0.00 4.68
49 50 1.617322 TATCTCCCGTCATTAGCGCT 58.383 50.000 17.26 17.26 0.00 5.92
50 51 2.433868 TTATCTCCCGTCATTAGCGC 57.566 50.000 0.00 0.00 0.00 5.92
51 52 3.927142 GGAATTATCTCCCGTCATTAGCG 59.073 47.826 0.00 0.00 0.00 4.26
52 53 4.894784 TGGAATTATCTCCCGTCATTAGC 58.105 43.478 0.00 0.00 34.22 3.09
53 54 4.932200 GCTGGAATTATCTCCCGTCATTAG 59.068 45.833 0.00 0.00 34.22 1.73
54 55 4.560716 CGCTGGAATTATCTCCCGTCATTA 60.561 45.833 0.00 0.00 34.22 1.90
55 56 3.744660 GCTGGAATTATCTCCCGTCATT 58.255 45.455 0.00 0.00 34.22 2.57
56 57 2.289072 CGCTGGAATTATCTCCCGTCAT 60.289 50.000 0.00 0.00 34.22 3.06
57 58 1.068588 CGCTGGAATTATCTCCCGTCA 59.931 52.381 0.00 0.00 34.22 4.35
58 59 1.784525 CGCTGGAATTATCTCCCGTC 58.215 55.000 0.00 0.00 34.22 4.79
59 60 0.249911 GCGCTGGAATTATCTCCCGT 60.250 55.000 0.00 0.00 34.22 5.28
60 61 0.951040 GGCGCTGGAATTATCTCCCG 60.951 60.000 7.64 0.00 34.22 5.14
61 62 0.606673 GGGCGCTGGAATTATCTCCC 60.607 60.000 7.64 0.00 34.22 4.30
62 63 0.108585 TGGGCGCTGGAATTATCTCC 59.891 55.000 7.64 0.00 35.88 3.71
63 64 1.517242 CTGGGCGCTGGAATTATCTC 58.483 55.000 7.64 0.00 0.00 2.75
64 65 0.109342 CCTGGGCGCTGGAATTATCT 59.891 55.000 20.39 0.00 0.00 1.98
65 66 0.108585 TCCTGGGCGCTGGAATTATC 59.891 55.000 24.35 0.00 0.00 1.75
66 67 0.109342 CTCCTGGGCGCTGGAATTAT 59.891 55.000 25.92 0.00 31.23 1.28
67 68 0.980754 TCTCCTGGGCGCTGGAATTA 60.981 55.000 25.92 14.15 31.23 1.40
68 69 2.273449 CTCCTGGGCGCTGGAATT 59.727 61.111 25.92 0.00 31.23 2.17
69 70 2.688666 TCTCCTGGGCGCTGGAAT 60.689 61.111 25.92 0.00 31.23 3.01
70 71 3.706373 GTCTCCTGGGCGCTGGAA 61.706 66.667 25.92 15.93 31.23 3.53
71 72 4.704103 AGTCTCCTGGGCGCTGGA 62.704 66.667 24.76 24.76 0.00 3.86
72 73 2.754664 AAAAGTCTCCTGGGCGCTGG 62.755 60.000 19.19 19.19 0.00 4.85
73 74 0.890996 AAAAAGTCTCCTGGGCGCTG 60.891 55.000 7.64 0.70 0.00 5.18
74 75 0.690762 TAAAAAGTCTCCTGGGCGCT 59.309 50.000 7.64 0.00 0.00 5.92
75 76 1.087501 CTAAAAAGTCTCCTGGGCGC 58.912 55.000 0.00 0.00 0.00 6.53
76 77 1.087501 GCTAAAAAGTCTCCTGGGCG 58.912 55.000 0.00 0.00 0.00 6.13
77 78 1.087501 CGCTAAAAAGTCTCCTGGGC 58.912 55.000 0.00 0.00 0.00 5.36
78 79 1.278127 TCCGCTAAAAAGTCTCCTGGG 59.722 52.381 0.00 0.00 0.00 4.45
79 80 2.289444 TGTCCGCTAAAAAGTCTCCTGG 60.289 50.000 0.00 0.00 0.00 4.45
80 81 2.737252 GTGTCCGCTAAAAAGTCTCCTG 59.263 50.000 0.00 0.00 0.00 3.86
81 82 2.289506 GGTGTCCGCTAAAAAGTCTCCT 60.290 50.000 0.00 0.00 0.00 3.69
82 83 2.074576 GGTGTCCGCTAAAAAGTCTCC 58.925 52.381 0.00 0.00 0.00 3.71
83 84 1.725164 CGGTGTCCGCTAAAAAGTCTC 59.275 52.381 0.00 0.00 41.17 3.36
84 85 1.792006 CGGTGTCCGCTAAAAAGTCT 58.208 50.000 0.00 0.00 41.17 3.24
91 92 2.862674 GGGCAATCGGTGTCCGCTAA 62.863 60.000 3.12 0.00 43.73 3.09
92 93 3.379865 GGGCAATCGGTGTCCGCTA 62.380 63.158 3.12 0.00 43.73 4.26
93 94 4.778143 GGGCAATCGGTGTCCGCT 62.778 66.667 3.12 0.00 43.73 5.52
108 109 2.034124 CCATAACAAGGCCAGATTGGG 58.966 52.381 5.01 0.00 38.19 4.12
109 110 2.689983 GTCCATAACAAGGCCAGATTGG 59.310 50.000 5.01 4.21 41.55 3.16
110 111 3.624777 AGTCCATAACAAGGCCAGATTG 58.375 45.455 5.01 3.08 0.00 2.67
111 112 4.019174 CAAGTCCATAACAAGGCCAGATT 58.981 43.478 5.01 0.00 0.00 2.40
112 113 3.266772 TCAAGTCCATAACAAGGCCAGAT 59.733 43.478 5.01 0.00 0.00 2.90
113 114 2.642311 TCAAGTCCATAACAAGGCCAGA 59.358 45.455 5.01 0.00 0.00 3.86
114 115 3.071874 TCAAGTCCATAACAAGGCCAG 57.928 47.619 5.01 0.00 0.00 4.85
115 116 3.517296 TTCAAGTCCATAACAAGGCCA 57.483 42.857 5.01 0.00 0.00 5.36
116 117 4.556233 GTTTTCAAGTCCATAACAAGGCC 58.444 43.478 0.00 0.00 0.00 5.19
117 118 4.556233 GGTTTTCAAGTCCATAACAAGGC 58.444 43.478 0.00 0.00 0.00 4.35
118 119 4.586841 TGGGTTTTCAAGTCCATAACAAGG 59.413 41.667 0.00 0.00 0.00 3.61
119 120 5.528870 GTGGGTTTTCAAGTCCATAACAAG 58.471 41.667 0.00 0.00 0.00 3.16
120 121 4.036971 CGTGGGTTTTCAAGTCCATAACAA 59.963 41.667 0.00 0.00 0.00 2.83
121 122 3.566322 CGTGGGTTTTCAAGTCCATAACA 59.434 43.478 0.00 0.00 0.00 2.41
122 123 3.610821 GCGTGGGTTTTCAAGTCCATAAC 60.611 47.826 0.00 0.00 0.00 1.89
123 124 2.554893 GCGTGGGTTTTCAAGTCCATAA 59.445 45.455 0.00 0.00 0.00 1.90
124 125 2.156098 GCGTGGGTTTTCAAGTCCATA 58.844 47.619 0.00 0.00 0.00 2.74
125 126 0.958822 GCGTGGGTTTTCAAGTCCAT 59.041 50.000 0.00 0.00 0.00 3.41
126 127 0.394488 TGCGTGGGTTTTCAAGTCCA 60.394 50.000 0.00 0.00 0.00 4.02
127 128 0.741915 TTGCGTGGGTTTTCAAGTCC 59.258 50.000 0.00 0.00 0.00 3.85
128 129 1.864029 GCTTGCGTGGGTTTTCAAGTC 60.864 52.381 0.00 0.00 38.44 3.01
129 130 0.102300 GCTTGCGTGGGTTTTCAAGT 59.898 50.000 0.00 0.00 38.44 3.16
130 131 0.934436 CGCTTGCGTGGGTTTTCAAG 60.934 55.000 6.86 0.00 39.00 3.02
131 132 1.064946 CGCTTGCGTGGGTTTTCAA 59.935 52.632 6.86 0.00 0.00 2.69
132 133 2.718731 CGCTTGCGTGGGTTTTCA 59.281 55.556 6.86 0.00 0.00 2.69
133 134 1.847890 TAGCGCTTGCGTGGGTTTTC 61.848 55.000 18.68 0.00 45.69 2.29
134 135 1.448922 TTAGCGCTTGCGTGGGTTTT 61.449 50.000 18.68 0.00 45.69 2.43
135 136 1.241315 ATTAGCGCTTGCGTGGGTTT 61.241 50.000 18.68 0.00 45.69 3.27
136 137 1.674322 ATTAGCGCTTGCGTGGGTT 60.674 52.632 18.68 0.00 45.69 4.11
137 138 2.046314 ATTAGCGCTTGCGTGGGT 60.046 55.556 18.68 0.00 45.69 4.51
138 139 2.106074 TCATTAGCGCTTGCGTGGG 61.106 57.895 18.68 0.00 45.69 4.61
139 140 1.060937 GTCATTAGCGCTTGCGTGG 59.939 57.895 18.68 0.00 45.69 4.94
140 141 1.296145 CGTCATTAGCGCTTGCGTG 60.296 57.895 18.68 9.97 45.69 5.34
141 142 2.452813 CCGTCATTAGCGCTTGCGT 61.453 57.895 18.68 0.00 45.69 5.24
142 143 2.321060 CCGTCATTAGCGCTTGCG 59.679 61.111 18.68 15.98 45.69 4.85
143 144 2.709475 CCCGTCATTAGCGCTTGC 59.291 61.111 18.68 4.34 39.58 4.01
144 145 1.369091 AAGCCCGTCATTAGCGCTTG 61.369 55.000 18.68 9.48 38.32 4.01
145 146 0.676782 AAAGCCCGTCATTAGCGCTT 60.677 50.000 18.68 0.00 41.37 4.68
146 147 1.078426 AAAGCCCGTCATTAGCGCT 60.078 52.632 17.26 17.26 0.00 5.92
147 148 1.090052 AGAAAGCCCGTCATTAGCGC 61.090 55.000 0.00 0.00 0.00 5.92
148 149 0.931005 GAGAAAGCCCGTCATTAGCG 59.069 55.000 0.00 0.00 0.00 4.26
149 150 2.024176 TGAGAAAGCCCGTCATTAGC 57.976 50.000 0.00 0.00 0.00 3.09
150 151 2.874701 CCATGAGAAAGCCCGTCATTAG 59.125 50.000 0.00 0.00 0.00 1.73
151 152 2.421388 CCCATGAGAAAGCCCGTCATTA 60.421 50.000 0.00 0.00 0.00 1.90
152 153 1.683011 CCCATGAGAAAGCCCGTCATT 60.683 52.381 0.00 0.00 0.00 2.57
153 154 0.107017 CCCATGAGAAAGCCCGTCAT 60.107 55.000 0.00 0.00 0.00 3.06
154 155 1.299648 CCCATGAGAAAGCCCGTCA 59.700 57.895 0.00 0.00 0.00 4.35
155 156 2.115291 GCCCATGAGAAAGCCCGTC 61.115 63.158 0.00 0.00 0.00 4.79
156 157 2.044946 GCCCATGAGAAAGCCCGT 60.045 61.111 0.00 0.00 0.00 5.28
157 158 2.830370 GGCCCATGAGAAAGCCCG 60.830 66.667 0.00 0.00 39.60 6.13
159 160 1.269958 AAAAGGCCCATGAGAAAGCC 58.730 50.000 0.00 0.00 46.13 4.35
160 161 3.677148 GCTAAAAAGGCCCATGAGAAAGC 60.677 47.826 0.00 0.00 0.00 3.51
161 162 3.766051 AGCTAAAAAGGCCCATGAGAAAG 59.234 43.478 0.00 0.00 0.00 2.62
162 163 3.778265 AGCTAAAAAGGCCCATGAGAAA 58.222 40.909 0.00 0.00 0.00 2.52
163 164 3.456380 AGCTAAAAAGGCCCATGAGAA 57.544 42.857 0.00 0.00 0.00 2.87
164 165 3.456380 AAGCTAAAAAGGCCCATGAGA 57.544 42.857 0.00 0.00 0.00 3.27
165 166 3.428045 CGAAAGCTAAAAAGGCCCATGAG 60.428 47.826 0.00 0.00 0.00 2.90
166 167 2.491693 CGAAAGCTAAAAAGGCCCATGA 59.508 45.455 0.00 0.00 0.00 3.07
167 168 2.231235 ACGAAAGCTAAAAAGGCCCATG 59.769 45.455 0.00 0.00 0.00 3.66
168 169 2.525368 ACGAAAGCTAAAAAGGCCCAT 58.475 42.857 0.00 0.00 0.00 4.00
169 170 1.989706 ACGAAAGCTAAAAAGGCCCA 58.010 45.000 0.00 0.00 0.00 5.36
170 171 3.340928 TCTACGAAAGCTAAAAAGGCCC 58.659 45.455 0.00 0.00 0.00 5.80
171 172 4.001652 ACTCTACGAAAGCTAAAAAGGCC 58.998 43.478 0.00 0.00 0.00 5.19
172 173 5.178809 TGAACTCTACGAAAGCTAAAAAGGC 59.821 40.000 0.00 0.00 0.00 4.35
173 174 6.780706 TGAACTCTACGAAAGCTAAAAAGG 57.219 37.500 0.00 0.00 0.00 3.11
174 175 7.852516 ACTTGAACTCTACGAAAGCTAAAAAG 58.147 34.615 0.00 0.00 0.00 2.27
175 176 7.781548 ACTTGAACTCTACGAAAGCTAAAAA 57.218 32.000 0.00 0.00 0.00 1.94
176 177 7.781548 AACTTGAACTCTACGAAAGCTAAAA 57.218 32.000 0.00 0.00 0.00 1.52
177 178 8.876275 TTAACTTGAACTCTACGAAAGCTAAA 57.124 30.769 0.00 0.00 0.00 1.85
178 179 8.139989 ACTTAACTTGAACTCTACGAAAGCTAA 58.860 33.333 0.00 0.00 0.00 3.09
179 180 7.594015 CACTTAACTTGAACTCTACGAAAGCTA 59.406 37.037 0.00 0.00 0.00 3.32
180 181 6.421202 CACTTAACTTGAACTCTACGAAAGCT 59.579 38.462 0.00 0.00 0.00 3.74
181 182 6.420008 TCACTTAACTTGAACTCTACGAAAGC 59.580 38.462 0.00 0.00 0.00 3.51
182 183 7.925703 TCACTTAACTTGAACTCTACGAAAG 57.074 36.000 0.00 0.00 0.00 2.62
183 184 9.622004 CTATCACTTAACTTGAACTCTACGAAA 57.378 33.333 0.00 0.00 0.00 3.46
184 185 8.242053 CCTATCACTTAACTTGAACTCTACGAA 58.758 37.037 0.00 0.00 0.00 3.85
185 186 7.148120 CCCTATCACTTAACTTGAACTCTACGA 60.148 40.741 0.00 0.00 0.00 3.43
186 187 6.973474 CCCTATCACTTAACTTGAACTCTACG 59.027 42.308 0.00 0.00 0.00 3.51
187 188 7.266400 CCCCTATCACTTAACTTGAACTCTAC 58.734 42.308 0.00 0.00 0.00 2.59
188 189 6.383147 CCCCCTATCACTTAACTTGAACTCTA 59.617 42.308 0.00 0.00 0.00 2.43
189 190 5.189934 CCCCCTATCACTTAACTTGAACTCT 59.810 44.000 0.00 0.00 0.00 3.24
190 191 5.429130 CCCCCTATCACTTAACTTGAACTC 58.571 45.833 0.00 0.00 0.00 3.01
191 192 5.437191 CCCCCTATCACTTAACTTGAACT 57.563 43.478 0.00 0.00 0.00 3.01
210 211 0.619543 TACAGAAGTACCTGGCCCCC 60.620 60.000 0.00 0.00 38.44 5.40
211 212 1.282382 TTACAGAAGTACCTGGCCCC 58.718 55.000 0.00 0.00 38.44 5.80
212 213 2.919228 CATTACAGAAGTACCTGGCCC 58.081 52.381 0.00 0.00 38.44 5.80
213 214 2.289565 GCATTACAGAAGTACCTGGCC 58.710 52.381 0.00 0.00 38.44 5.36
214 215 2.985896 TGCATTACAGAAGTACCTGGC 58.014 47.619 0.00 0.00 38.44 4.85
215 216 4.271049 CGATTGCATTACAGAAGTACCTGG 59.729 45.833 4.45 0.00 38.44 4.45
216 217 4.260375 GCGATTGCATTACAGAAGTACCTG 60.260 45.833 0.00 0.00 42.15 4.00
217 218 3.871594 GCGATTGCATTACAGAAGTACCT 59.128 43.478 0.00 0.00 42.15 3.08
218 219 4.197107 GCGATTGCATTACAGAAGTACC 57.803 45.455 0.00 0.00 42.15 3.34
232 233 4.711721 TCATAAATTAGCGATGCGATTGC 58.288 39.130 0.00 0.00 43.20 3.56
233 234 5.920312 ACTCATAAATTAGCGATGCGATTG 58.080 37.500 0.00 0.00 0.00 2.67
234 235 6.645003 TGTACTCATAAATTAGCGATGCGATT 59.355 34.615 0.00 0.00 0.00 3.34
235 236 6.089551 GTGTACTCATAAATTAGCGATGCGAT 59.910 38.462 0.00 0.00 0.00 4.58
236 237 5.401376 GTGTACTCATAAATTAGCGATGCGA 59.599 40.000 0.00 0.00 0.00 5.10
237 238 5.174943 TGTGTACTCATAAATTAGCGATGCG 59.825 40.000 0.00 0.00 0.00 4.73
238 239 6.525121 TGTGTACTCATAAATTAGCGATGC 57.475 37.500 0.00 0.00 0.00 3.91
239 240 8.076714 ACATGTGTACTCATAAATTAGCGATG 57.923 34.615 9.95 0.00 0.00 3.84
240 241 9.758651 TTACATGTGTACTCATAAATTAGCGAT 57.241 29.630 9.11 0.00 0.00 4.58
241 242 9.027129 GTTACATGTGTACTCATAAATTAGCGA 57.973 33.333 9.11 0.00 0.00 4.93
242 243 7.996551 CGTTACATGTGTACTCATAAATTAGCG 59.003 37.037 9.11 9.00 0.00 4.26
243 244 8.814235 ACGTTACATGTGTACTCATAAATTAGC 58.186 33.333 9.11 2.40 0.00 3.09
246 247 8.662141 GGAACGTTACATGTGTACTCATAAATT 58.338 33.333 9.11 1.87 0.00 1.82
247 248 7.820386 TGGAACGTTACATGTGTACTCATAAAT 59.180 33.333 9.75 2.72 0.00 1.40
248 249 7.153315 TGGAACGTTACATGTGTACTCATAAA 58.847 34.615 9.75 5.65 0.00 1.40
249 250 6.689554 TGGAACGTTACATGTGTACTCATAA 58.310 36.000 9.75 0.21 0.00 1.90
250 251 6.270156 TGGAACGTTACATGTGTACTCATA 57.730 37.500 9.75 0.00 0.00 2.15
251 252 5.142061 TGGAACGTTACATGTGTACTCAT 57.858 39.130 9.75 4.59 0.00 2.90
252 253 4.587584 TGGAACGTTACATGTGTACTCA 57.412 40.909 9.75 0.00 0.00 3.41
253 254 4.264614 CGATGGAACGTTACATGTGTACTC 59.735 45.833 30.28 13.78 30.10 2.59
254 255 4.082625 TCGATGGAACGTTACATGTGTACT 60.083 41.667 30.28 5.37 30.10 2.73
255 256 4.168014 TCGATGGAACGTTACATGTGTAC 58.832 43.478 30.28 14.18 30.10 2.90
256 257 4.437772 TCGATGGAACGTTACATGTGTA 57.562 40.909 30.28 9.81 30.10 2.90
257 258 3.306917 TCGATGGAACGTTACATGTGT 57.693 42.857 30.28 7.48 30.10 3.72
258 259 3.061205 CGATCGATGGAACGTTACATGTG 60.061 47.826 30.28 20.90 34.21 3.21
259 260 3.113322 CGATCGATGGAACGTTACATGT 58.887 45.455 30.28 15.51 34.21 3.21
260 261 3.753305 CGATCGATGGAACGTTACATG 57.247 47.619 30.28 20.52 34.21 3.21
548 549 0.599204 TCGTTTTCCTCGCACACTCC 60.599 55.000 0.00 0.00 0.00 3.85
549 550 1.126846 CATCGTTTTCCTCGCACACTC 59.873 52.381 0.00 0.00 0.00 3.51
550 551 1.148310 CATCGTTTTCCTCGCACACT 58.852 50.000 0.00 0.00 0.00 3.55
551 552 0.165944 CCATCGTTTTCCTCGCACAC 59.834 55.000 0.00 0.00 0.00 3.82
552 553 0.250124 ACCATCGTTTTCCTCGCACA 60.250 50.000 0.00 0.00 0.00 4.57
553 554 0.165944 CACCATCGTTTTCCTCGCAC 59.834 55.000 0.00 0.00 0.00 5.34
554 555 0.250124 ACACCATCGTTTTCCTCGCA 60.250 50.000 0.00 0.00 0.00 5.10
555 556 1.659098 CTACACCATCGTTTTCCTCGC 59.341 52.381 0.00 0.00 0.00 5.03
556 557 2.955614 ACTACACCATCGTTTTCCTCG 58.044 47.619 0.00 0.00 0.00 4.63
557 558 4.062991 ACAACTACACCATCGTTTTCCTC 58.937 43.478 0.00 0.00 0.00 3.71
558 559 4.081322 ACAACTACACCATCGTTTTCCT 57.919 40.909 0.00 0.00 0.00 3.36
559 560 4.533222 CAACAACTACACCATCGTTTTCC 58.467 43.478 0.00 0.00 0.00 3.13
560 561 4.273969 TCCAACAACTACACCATCGTTTTC 59.726 41.667 0.00 0.00 0.00 2.29
561 562 4.200874 TCCAACAACTACACCATCGTTTT 58.799 39.130 0.00 0.00 0.00 2.43
562 563 3.811083 TCCAACAACTACACCATCGTTT 58.189 40.909 0.00 0.00 0.00 3.60
563 564 3.070446 TCTCCAACAACTACACCATCGTT 59.930 43.478 0.00 0.00 0.00 3.85
564 565 2.631062 TCTCCAACAACTACACCATCGT 59.369 45.455 0.00 0.00 0.00 3.73
565 566 3.313012 TCTCCAACAACTACACCATCG 57.687 47.619 0.00 0.00 0.00 3.84
566 567 4.894784 TCTTCTCCAACAACTACACCATC 58.105 43.478 0.00 0.00 0.00 3.51
567 568 4.974645 TCTTCTCCAACAACTACACCAT 57.025 40.909 0.00 0.00 0.00 3.55
568 569 4.974645 ATCTTCTCCAACAACTACACCA 57.025 40.909 0.00 0.00 0.00 4.17
569 570 6.698380 TCTTATCTTCTCCAACAACTACACC 58.302 40.000 0.00 0.00 0.00 4.16
570 571 8.660373 CAATCTTATCTTCTCCAACAACTACAC 58.340 37.037 0.00 0.00 0.00 2.90
571 572 8.593679 TCAATCTTATCTTCTCCAACAACTACA 58.406 33.333 0.00 0.00 0.00 2.74
572 573 9.092876 CTCAATCTTATCTTCTCCAACAACTAC 57.907 37.037 0.00 0.00 0.00 2.73
573 574 9.035890 TCTCAATCTTATCTTCTCCAACAACTA 57.964 33.333 0.00 0.00 0.00 2.24
574 575 7.911651 TCTCAATCTTATCTTCTCCAACAACT 58.088 34.615 0.00 0.00 0.00 3.16
575 576 8.037758 TCTCTCAATCTTATCTTCTCCAACAAC 58.962 37.037 0.00 0.00 0.00 3.32
576 577 8.138928 TCTCTCAATCTTATCTTCTCCAACAA 57.861 34.615 0.00 0.00 0.00 2.83
577 578 7.617329 TCTCTCTCAATCTTATCTTCTCCAACA 59.383 37.037 0.00 0.00 0.00 3.33
578 579 8.006298 TCTCTCTCAATCTTATCTTCTCCAAC 57.994 38.462 0.00 0.00 0.00 3.77
579 580 8.058235 TCTCTCTCTCAATCTTATCTTCTCCAA 58.942 37.037 0.00 0.00 0.00 3.53
580 581 7.581814 TCTCTCTCTCAATCTTATCTTCTCCA 58.418 38.462 0.00 0.00 0.00 3.86
581 582 8.463930 TTCTCTCTCTCAATCTTATCTTCTCC 57.536 38.462 0.00 0.00 0.00 3.71
584 585 9.034544 GCTTTTCTCTCTCTCAATCTTATCTTC 57.965 37.037 0.00 0.00 0.00 2.87
585 586 7.706179 CGCTTTTCTCTCTCTCAATCTTATCTT 59.294 37.037 0.00 0.00 0.00 2.40
586 587 7.202526 CGCTTTTCTCTCTCTCAATCTTATCT 58.797 38.462 0.00 0.00 0.00 1.98
587 588 6.420604 CCGCTTTTCTCTCTCTCAATCTTATC 59.579 42.308 0.00 0.00 0.00 1.75
588 589 6.127196 ACCGCTTTTCTCTCTCTCAATCTTAT 60.127 38.462 0.00 0.00 0.00 1.73
589 590 5.186021 ACCGCTTTTCTCTCTCTCAATCTTA 59.814 40.000 0.00 0.00 0.00 2.10
590 591 4.020662 ACCGCTTTTCTCTCTCTCAATCTT 60.021 41.667 0.00 0.00 0.00 2.40
591 592 3.513515 ACCGCTTTTCTCTCTCTCAATCT 59.486 43.478 0.00 0.00 0.00 2.40
592 593 3.616379 CACCGCTTTTCTCTCTCTCAATC 59.384 47.826 0.00 0.00 0.00 2.67
593 594 3.594134 CACCGCTTTTCTCTCTCTCAAT 58.406 45.455 0.00 0.00 0.00 2.57
594 595 2.289072 CCACCGCTTTTCTCTCTCTCAA 60.289 50.000 0.00 0.00 0.00 3.02
595 596 1.273606 CCACCGCTTTTCTCTCTCTCA 59.726 52.381 0.00 0.00 0.00 3.27
596 597 1.404851 CCCACCGCTTTTCTCTCTCTC 60.405 57.143 0.00 0.00 0.00 3.20
597 598 0.610687 CCCACCGCTTTTCTCTCTCT 59.389 55.000 0.00 0.00 0.00 3.10
598 599 0.321996 ACCCACCGCTTTTCTCTCTC 59.678 55.000 0.00 0.00 0.00 3.20
599 600 0.035458 CACCCACCGCTTTTCTCTCT 59.965 55.000 0.00 0.00 0.00 3.10
600 601 0.955919 CCACCCACCGCTTTTCTCTC 60.956 60.000 0.00 0.00 0.00 3.20
601 602 1.073199 CCACCCACCGCTTTTCTCT 59.927 57.895 0.00 0.00 0.00 3.10
602 603 1.971695 CCCACCCACCGCTTTTCTC 60.972 63.158 0.00 0.00 0.00 2.87
603 604 2.115266 CCCACCCACCGCTTTTCT 59.885 61.111 0.00 0.00 0.00 2.52
604 605 1.802337 GAACCCACCCACCGCTTTTC 61.802 60.000 0.00 0.00 0.00 2.29
605 606 1.830847 GAACCCACCCACCGCTTTT 60.831 57.895 0.00 0.00 0.00 2.27
606 607 2.203437 GAACCCACCCACCGCTTT 60.203 61.111 0.00 0.00 0.00 3.51
607 608 2.575455 TTTGAACCCACCCACCGCTT 62.575 55.000 0.00 0.00 0.00 4.68
608 609 2.976494 CTTTGAACCCACCCACCGCT 62.976 60.000 0.00 0.00 0.00 5.52
609 610 2.519780 TTTGAACCCACCCACCGC 60.520 61.111 0.00 0.00 0.00 5.68
610 611 1.901464 CCTTTGAACCCACCCACCG 60.901 63.158 0.00 0.00 0.00 4.94
611 612 0.826256 GTCCTTTGAACCCACCCACC 60.826 60.000 0.00 0.00 0.00 4.61
612 613 0.106419 TGTCCTTTGAACCCACCCAC 60.106 55.000 0.00 0.00 0.00 4.61
613 614 0.106419 GTGTCCTTTGAACCCACCCA 60.106 55.000 0.00 0.00 0.00 4.51
614 615 1.170290 CGTGTCCTTTGAACCCACCC 61.170 60.000 0.00 0.00 0.00 4.61
615 616 0.464916 ACGTGTCCTTTGAACCCACC 60.465 55.000 0.00 0.00 0.00 4.61
616 617 0.661020 CACGTGTCCTTTGAACCCAC 59.339 55.000 7.58 0.00 0.00 4.61
617 618 0.464735 CCACGTGTCCTTTGAACCCA 60.465 55.000 15.65 0.00 0.00 4.51
618 619 1.792118 GCCACGTGTCCTTTGAACCC 61.792 60.000 15.65 0.00 0.00 4.11
619 620 1.098712 TGCCACGTGTCCTTTGAACC 61.099 55.000 15.65 0.00 0.00 3.62
620 621 0.951558 ATGCCACGTGTCCTTTGAAC 59.048 50.000 15.65 0.00 0.00 3.18
621 622 0.950836 CATGCCACGTGTCCTTTGAA 59.049 50.000 15.65 0.00 0.00 2.69
622 623 0.107643 TCATGCCACGTGTCCTTTGA 59.892 50.000 15.65 7.24 0.00 2.69
623 624 0.518636 CTCATGCCACGTGTCCTTTG 59.481 55.000 15.65 4.97 0.00 2.77
624 625 0.396435 TCTCATGCCACGTGTCCTTT 59.604 50.000 15.65 0.00 0.00 3.11
625 626 0.036952 CTCTCATGCCACGTGTCCTT 60.037 55.000 15.65 0.49 0.00 3.36
626 627 0.900182 TCTCTCATGCCACGTGTCCT 60.900 55.000 15.65 0.00 0.00 3.85
627 628 0.037326 TTCTCTCATGCCACGTGTCC 60.037 55.000 15.65 5.64 0.00 4.02
628 629 1.728971 CTTTCTCTCATGCCACGTGTC 59.271 52.381 15.65 0.98 0.00 3.67
629 630 1.344438 TCTTTCTCTCATGCCACGTGT 59.656 47.619 15.65 0.00 0.00 4.49
630 631 1.728971 GTCTTTCTCTCATGCCACGTG 59.271 52.381 9.08 9.08 0.00 4.49
631 632 1.670087 CGTCTTTCTCTCATGCCACGT 60.670 52.381 0.00 0.00 0.00 4.49
632 633 0.994995 CGTCTTTCTCTCATGCCACG 59.005 55.000 0.00 0.00 0.00 4.94
633 634 1.996191 GTCGTCTTTCTCTCATGCCAC 59.004 52.381 0.00 0.00 0.00 5.01
634 635 1.895798 AGTCGTCTTTCTCTCATGCCA 59.104 47.619 0.00 0.00 0.00 4.92
635 636 2.663826 AGTCGTCTTTCTCTCATGCC 57.336 50.000 0.00 0.00 0.00 4.40
636 637 3.544285 CGTAAGTCGTCTTTCTCTCATGC 59.456 47.826 0.00 0.00 35.36 4.06
653 654 4.332828 GGCTGATAAGAGCGACACGTAAG 61.333 52.174 0.00 0.00 40.13 2.34
654 655 2.479049 GGCTGATAAGAGCGACACGTAA 60.479 50.000 0.00 0.00 40.13 3.18
655 656 1.065102 GGCTGATAAGAGCGACACGTA 59.935 52.381 0.00 0.00 40.13 3.57
656 657 0.179134 GGCTGATAAGAGCGACACGT 60.179 55.000 0.00 0.00 40.13 4.49
657 658 1.202973 CGGCTGATAAGAGCGACACG 61.203 60.000 0.00 0.00 40.13 4.49
658 659 0.872021 CCGGCTGATAAGAGCGACAC 60.872 60.000 0.00 0.00 40.13 3.67
659 660 1.320344 ACCGGCTGATAAGAGCGACA 61.320 55.000 0.00 0.00 40.13 4.35
660 661 0.179108 AACCGGCTGATAAGAGCGAC 60.179 55.000 0.00 0.00 40.13 5.19
661 662 0.179111 CAACCGGCTGATAAGAGCGA 60.179 55.000 0.00 0.00 40.13 4.93
662 663 0.179111 TCAACCGGCTGATAAGAGCG 60.179 55.000 2.67 0.00 40.13 5.03
663 664 2.024176 TTCAACCGGCTGATAAGAGC 57.976 50.000 8.68 0.00 38.34 4.09
664 665 6.677781 TTATTTTCAACCGGCTGATAAGAG 57.322 37.500 8.68 0.00 0.00 2.85
665 666 6.402766 CGTTTATTTTCAACCGGCTGATAAGA 60.403 38.462 8.68 4.81 0.00 2.10
666 667 5.737290 CGTTTATTTTCAACCGGCTGATAAG 59.263 40.000 8.68 0.00 0.00 1.73
667 668 5.411977 TCGTTTATTTTCAACCGGCTGATAA 59.588 36.000 8.68 10.73 0.00 1.75
668 669 4.936411 TCGTTTATTTTCAACCGGCTGATA 59.064 37.500 8.68 0.42 0.00 2.15
669 670 3.754323 TCGTTTATTTTCAACCGGCTGAT 59.246 39.130 8.68 0.00 0.00 2.90
670 671 3.139850 TCGTTTATTTTCAACCGGCTGA 58.860 40.909 2.67 2.67 0.00 4.26
671 672 3.546002 TCGTTTATTTTCAACCGGCTG 57.454 42.857 0.00 0.00 0.00 4.85
672 673 4.776795 AATCGTTTATTTTCAACCGGCT 57.223 36.364 0.00 0.00 0.00 5.52
673 674 5.832568 AAAATCGTTTATTTTCAACCGGC 57.167 34.783 0.00 0.00 42.88 6.13
686 687 8.872845 GCCATCATTTATGAAAGAAAATCGTTT 58.127 29.630 0.00 0.00 40.69 3.60
687 688 8.034215 TGCCATCATTTATGAAAGAAAATCGTT 58.966 29.630 0.00 0.00 40.69 3.85
688 689 7.489113 GTGCCATCATTTATGAAAGAAAATCGT 59.511 33.333 0.00 0.00 40.69 3.73
689 690 7.488792 TGTGCCATCATTTATGAAAGAAAATCG 59.511 33.333 0.00 0.00 40.69 3.34
690 691 8.706492 TGTGCCATCATTTATGAAAGAAAATC 57.294 30.769 0.00 0.00 40.69 2.17
691 692 8.938906 GTTGTGCCATCATTTATGAAAGAAAAT 58.061 29.630 0.00 0.00 40.69 1.82
692 693 7.930325 TGTTGTGCCATCATTTATGAAAGAAAA 59.070 29.630 0.00 0.00 40.69 2.29
693 694 7.440198 TGTTGTGCCATCATTTATGAAAGAAA 58.560 30.769 0.00 0.00 40.69 2.52
694 695 6.990798 TGTTGTGCCATCATTTATGAAAGAA 58.009 32.000 0.00 0.00 40.69 2.52
695 696 6.587206 TGTTGTGCCATCATTTATGAAAGA 57.413 33.333 0.00 0.00 40.69 2.52
696 697 7.655236 TTTGTTGTGCCATCATTTATGAAAG 57.345 32.000 0.00 0.00 40.69 2.62
706 707 3.190327 CGTATCCTTTTGTTGTGCCATCA 59.810 43.478 0.00 0.00 0.00 3.07
710 711 2.161609 CCTCGTATCCTTTTGTTGTGCC 59.838 50.000 0.00 0.00 0.00 5.01
712 713 3.670625 TCCCTCGTATCCTTTTGTTGTG 58.329 45.455 0.00 0.00 0.00 3.33
806 807 0.817634 CCCAGTTTGTTCCTCGTGCA 60.818 55.000 0.00 0.00 0.00 4.57
927 930 2.039746 TCCTGCGGATGGAAAGAAAAGA 59.960 45.455 0.00 0.00 0.00 2.52
1358 1367 4.083164 CCATCTGATCTGATCTGAGACGAG 60.083 50.000 24.90 11.38 39.98 4.18
1520 1529 7.537649 CACACTTCTGATGATTTCAATTGACAG 59.462 37.037 7.89 11.01 32.78 3.51
1548 1557 1.388133 GCCCCAATCCCCAAGAAGT 59.612 57.895 0.00 0.00 0.00 3.01
1644 1653 5.239306 TGACAACCAAAAGAGAACTGCATAG 59.761 40.000 0.00 0.00 0.00 2.23
1645 1654 5.129634 TGACAACCAAAAGAGAACTGCATA 58.870 37.500 0.00 0.00 0.00 3.14
1646 1655 3.953612 TGACAACCAAAAGAGAACTGCAT 59.046 39.130 0.00 0.00 0.00 3.96
1704 1713 5.780984 AGCGAATAGTAGGTGCCTAATTAC 58.219 41.667 3.46 0.00 0.00 1.89
1715 1724 4.106197 GTGACACAGAAGCGAATAGTAGG 58.894 47.826 0.00 0.00 0.00 3.18
1718 1727 3.005897 ACAGTGACACAGAAGCGAATAGT 59.994 43.478 8.59 0.00 0.00 2.12
1719 1728 3.366121 CACAGTGACACAGAAGCGAATAG 59.634 47.826 8.59 0.00 0.00 1.73
1721 1730 2.138320 CACAGTGACACAGAAGCGAAT 58.862 47.619 8.59 0.00 0.00 3.34
1722 1731 1.136110 TCACAGTGACACAGAAGCGAA 59.864 47.619 8.59 0.00 0.00 4.70
1724 1733 1.788258 ATCACAGTGACACAGAAGCG 58.212 50.000 5.05 0.00 0.00 4.68
1801 1819 8.970020 AGCATTTTGAGTGTTTATGAATATGGA 58.030 29.630 0.00 0.00 0.00 3.41
1806 1824 6.810182 GCAGAGCATTTTGAGTGTTTATGAAT 59.190 34.615 0.00 0.00 0.00 2.57
1812 1830 3.382546 ACAGCAGAGCATTTTGAGTGTTT 59.617 39.130 0.00 0.00 0.00 2.83
1913 1934 4.279982 TGCTTATGCCAATCCAGATCAAA 58.720 39.130 0.00 0.00 38.71 2.69
1956 1977 8.643324 AGATTGATAGCTAAAGTTCGGTCTTAT 58.357 33.333 0.00 0.00 0.00 1.73
2014 2036 8.029642 ACAGGTCACTAAAATTCATCTAAACG 57.970 34.615 0.00 0.00 0.00 3.60
2023 2045 9.606631 AGATCAATAGACAGGTCACTAAAATTC 57.393 33.333 1.84 0.00 0.00 2.17
2074 2096 1.358759 GTGGTTTTGCGACAGGGTG 59.641 57.895 0.00 0.00 0.00 4.61
2076 2098 0.030638 CTTGTGGTTTTGCGACAGGG 59.969 55.000 0.00 0.00 37.14 4.45
2114 2136 4.159879 GCACAAACTCTAGCCTCTAGGTTA 59.840 45.833 0.00 0.00 37.57 2.85
2138 2160 8.823220 AAATTATCCTGCCAGTTAGTTACATT 57.177 30.769 0.00 0.00 0.00 2.71
2183 2211 3.732048 TTTTGGGACAGAGGGAATACC 57.268 47.619 0.00 0.00 42.39 2.73
2184 2212 6.318900 CACTTATTTTGGGACAGAGGGAATAC 59.681 42.308 0.00 0.00 42.39 1.89
2196 2224 9.411189 AGTACAACTTTAACACTTATTTTGGGA 57.589 29.630 0.00 0.00 0.00 4.37
2244 2272 8.645814 AAAGAATTTTAATACTCCCTCCGTTT 57.354 30.769 0.00 0.00 31.62 3.60
2273 2301 5.061721 ACTGAACAAACCTAACCTCCATT 57.938 39.130 0.00 0.00 0.00 3.16
2292 2320 3.279434 GGGCCACTATGGAGTAAAACTG 58.721 50.000 4.39 0.00 40.96 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.