>input_sequence_83498
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------------------------------------------ATGGCCCGCTCGTCCTCGCAGTCCCAGTCCTCCGTCGG
CGGTGCCGGCGCCGCCGGATCCCGCCCAGCCACCGCCGGGCCCCGCGGCACGCCCGCCGCCACGGCCGGCATGCGCCGCC
GACCCGGCCGCACCTCCTCCTCCGCGTCCGGTGGCGGAGGCTTCTCCGGCGGCGGAGGGAACAACATGCTGCGCTTCTAC
ACCGACGAGGCCCCGGGGCTGCGCCTCTCCCCGACCATGGTGCTCGTCATGTCCGTCTGCTTCATCGGCTTCGTCACCGC
CCTCCACGTCTTCGGCAAGCTCTACCGCTCCCGCACCGCCGCCTCCGCGTCCGCCTGA----------------------
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>chr4B_1_TraesCS4B01G135500
GGCAATAGTTTTTTTTTGAGGGATAAGACAGCAGCAGCTAACCCACGCAAGCGCTAATGACGGGAGATAATTCCAGCGCC
CAGGAGACTTTTTAGCGGACACCGATTGCCCAATCTGGCCTTGTTATGGACTTGAAAACCCACGCAAGCGCTAATGACGG
GCTTTCTCATGGGCCTTTTTAGCTTTCGTAGAGTTCAAGTTAAGTGATAGGGGGGCCAGGTACTTCTGTAATGCAATCGC
ATCGCTAATTTATGAGTACACATGTAACGTTCCATCGATCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTGTGCGAG
GAAAACGATGGTGTAGTTGTTGGAGAAGATAAGATTGAGAGAGAGAAAAGCGGTGGGTGGGTTCAAAGGACACGTGGCAT
GAGAGAAAGACGACTTACGTGTCGCTCTTATCAGCCGGTTGAAAATAAACGATTTTCTTTCATAAATGATGGCACAACAA
AAGGATACGAGGGAGGGAGGATATGGATGGAAATCTGAGAGGGCAACTTCTTTCTCTTTTTTTCGCAAAAGGGAAAGAAT
CCAAACTGCACGAGGAACAAACTGGGTAT--GTCCGCTCACTGACCGGTGGGCCTCGTCGGTCAGTAGCTCCGTCGTCAA
GTCTTGTACTCTTGTTAGCTCGAGATCCAGACTCGAGAGCGCGAGCGAGTCTTTTCTTTCCATCCGCAGGAGATCCCGAC
GAGAAGGCGAAGGCGAAGCAGGCGGCGCAACCGAAGCTCCTCATGGCCCGCTCGTCCTCGCAGTCCCAGTCCTCCGTCGG
CGGTGCCGGCGCCGCCGGATCCCGCCCAGCCACCGCCGGGCCCCGCGGCACGCCCGCCGCCACGGCCGGCATGCGCCGCC
GACCCGGCCGCACCTCCTCCTCCGCGTCCGGTGGCGGAGGCTTCTCCGGCGGCGGAGGGAACAACATGCTGCGCTTCTAC
ACCGACGAGGCCCCGGGGCTGCGCCTCTCCCCGACCATGGTGCTCGTCATGTCCGTCTGCTTCATCGGCTTCGTCACCGC
CCTCCACGTCTTCGGCAAGCTCTACCGCTCCCGCACCGCCGCCTCCGCGTCCGCCTGATCAACCCGGTTCC------TGT
TTCTTCCTCGTCTCAGATCAGATCAGATGGTTTTGGTGTGTAACAAAGAGGTTGTGGTTGCTACCTGACGAGTTAGATCT
GCCGAAGTACCCTACATGTTTAATTATGGTGCCCTTTGTGTTTCCATTTACCTTGTTGTTGCGATGAATTGTGGCTAATC
ACTTGTGCCTGTCAATTGAAATCATCAGAAGTGTGTACTTCTTGGGGATTGGGGCACAGTTTTGCCTGTCTGAGAACTAG
TAGACCAATTATGCATCTCGCTAGCTTCATACGTTGCTTAATTAAGTACCTACTATGCAGTTCTCTTTTGGTTGTCATCA
ATTTTTATTAGAGAACTGGATGTTTCTGTCGGGTAATTAGGCACCTACTATTC---------GCTTCTGTGTCACTGTGA
TAATACTAGTAGCTAATCTTTCTTCACTAAATATAGTTTCTATATATAGAATAGTTATTCCATATTCATAAACACTCAAA
ATGCTCTGCTGTTTTCATGGTTTGATGGCCTTTTATGGTGGAA-ATTCTTCTCAATCTTTTGACA--GTAATAAATGATG
AGCGATCAATTTCTTTGATCTGGATTGGCATAAGCAATTCGCTAGTGTTGTAACGTATAAGACCGAACTTTAGCTAT-CA
ATCTTAAACATGGTGGTACTTTGGGCAAAATTGCACGTTTAGATGAATTTTAGTGACCTGTCTATTGATCTGAACCTTGG
ATTGTTGAATTTGCCCACCCTGTCGCAAAACCACAAGTTACCTTTGAAAAAGAGATAACCTAGAGGCTAGAGTTTGTGCA
ATGTAACTAACTGGCAGGATAATTTACAAGAACAAG------AGATGTCTGGTATTCCCTCTGTCCCAAAATAAGTGTTA
AAGTTGTACTAAAGTTGAAACACTTATTTTGAAACGGAGGGAGTATTAAAATTCTTTTTAAATGGAGGTTAGGTTTGTTC
AGTTTTACTCCATAGTGGCCCAGGTACTGACATGGGTCAGCTG
>chr4A_698
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---------------------------------------------------------TTTCATAAACGATAGTACAACAA
AAGGATACGAGG--GGGAGGATATGGATGGAAATCTGAGAGGGCAACTTCTTTCTCTTTTTTTCGCAAAAGGGAAAGAAT
CCAAACAGCACGAGGAACAAACTGGGTATATGTCCGCTCACTGACCGGTGGGCCTCGTCGGTCAGTAGCTCCGTCGTCAA
GTCTTGTACTCTTGTTAGCTCGAGATCCAGACTCGAGAGCGCGAGCGAGACTTTTCTTTCCATCCGCAGGAGATCCCGAC
GAGAAGACGAAGGCGAAGCCGGCGGCGCAACCGAAGCCCCTCATGGCCCGCTCGTCCTCGCAGTCCCAGTCCTCCGTCGG
CGGCGCCGGCGCCGCCGGATCCCGCCCGGCCACCGCCGGGCCCCGCGGTACGCCCGCCGCCACGGCCGGCATGCGACGCC
GACCCGGCCGCACTTCCTCCTCCGCGTCCGGTGGCGGAGGCTTCTCCGGCGGTGGAGGGAACAACATGCTGCGCTTCTAC
ACCGACGAGGCCCCGGGGCTGCGCCTCTCCCCGACCATGGTGCTCGTCATGTCCGTCTGCTTCATCGGCTTCGTCACCGC
CCTCCACGTCTTCGGCAAGCTCTACCGCTCCCGCACCGCCGCCTCCGCGTCCGCCTGATCAATCCGGTTCCTGCTCCTGT
TTCGTCTTCGTCTCAGATCAGATCAGATGGTTTTGGTGTGTAACAAAGAGGCTGTGGTTGCTACCTGACGAGTTAGATCT
GCCGAAGTACCCTACATGTTTAATTATGGTGCCCTTTCTGTTTCCATTTACCTTGTTGTTGCGATGAATTGTGGCTAATC
ACTTGTGCTTGTCAATTGAAATCATCAGAAGTGTGTGCTTCTTGGGGATTGGGGCACAGTTTTGCCTGTTTGAGAACTAG
TAGACCAATTATGCATCTTGCTAGCTTCATACGTTGCTTAATTAAGTACCTA---TGCAGTTCTCTTTTGGTTGTCATCA
ATTTTTATTAGAGAACTGGATGTTTCTGTCGGATAATTAGGCATCTCATGATTCTTTCTCGAGCTTCTGTGTCACTGTGA
TAATACTAGTAGCTAATCTTTGTTCACTAAATATAGTTTCTATATATAGAATAGCTATGCCATGTTCAT-AACACTCGAA
ATGCTCTGCTGTTTTCATGGTTTGATGGCCTTTTATGGTGGAAAATTCTGCTCAATCTTTTGACAGGGTAATAAATGATG
AGTGATCAATTTCGTTGATCTGGATTGGCATAAGCAATTCGCTAATGTTGTAACGTGTAAGACAGAACTTTAGCTATGCA
ATCT-AAACGTGGTGGTACTTTGGGCAAAATTGCATGTTTAGATTAATTTTAGTGACCTGTATATTGATCTGAACCTTGG
ATTGTTGAATTTGCCAAGCCTGTCGCAAAACCACAAGTTACCTTTGAAAAAGAGAAAACCTAGAGGCTAGAGGTTGTGCG
ATGTAACAAACTGGCAACATAATT--------------------------------------------------------
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>chr4D_720
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-------------------------------------------------------------------------------A
AATGATATGAGGGAGGTAGGATATGGATGGAAATCTGAGAGGGCAACTTCTTCCTCTTTTTTTCGCAAAAGGGAAAGAAT
CCAAACAGC----------------------------TCACTGACCGGTGGGCCTCGTCGGTCAGTAGCTCCGTCGTCAA
GTCTTGTACTCTTGTTAGCTCGAGATCCAGACTCGAGAGCGCGAGCGAGACTTTTCTTTCCATCCGCAGGAGATCCCGAC
GAGAAGGCGAAGGCGAAGCCGGCGGCGCAACCGAAGCCCCTCATGGCCCGCTCGTCCTCGCAGTCCCAGTCCTCCGTCGG
CGGTGCCGGCGCCGCCGGATCCCGCCCGGCCACCGCCGGGCCCCGCGGCACGCCCGCCGCCACGGCTGGCATGCGCCGCC
GACCCGGCCGCACCTCCTCCTCCGCGTCCGGTGGCGGAGGCTTCTCCGGCGGCGGAGGGAACAACATGCTGCGCTTCTAC
ACCGACGAGGCCCCGGGGCTGCGCCTCTCCCCGACCATGGTGCTCGTCATGTCCGTCTGCTTCATCGGCTTCGTCACCGC
CCTCCACGTCTTCGGCAAGCTCTACCGCTCCCGCACCGCCGCCTCCGCGTCCGCCTGATCAACCCGGTTCCTGCTCCTGT
TTGTTCTTCGTTTCAGATCAGATCAGATGGTTTTGGTGTGTAACAAAGAGGCTGTGGTTGCTACCTGACGAGTTAGATCT
GCCGAAGTACCCTACATGTTTAATTATGGTGCCCTTTCTGTTTCCATTTACCTTGTTGTTGCGATGAATTGTGGCTAATC
ACTTGTGCTTGTCAATTGAAATCATCAGAAGTGTGTGCTTCTTGGGGATTGGGGCACAGTTTTGCCTGTCTGAGAACTAG
TAGACCAATTATGCATCTCGCTAGCTTCATACCTTGCTTAATTAAGTACCTA---TGCGGTTATCTTTTGGTTGTCATCA
ATTTTTATTAGAGAACTGGTTGTTTCTGTCCGTTAATTAGGCATCTCATGGTTATTTCTCGAGCTTCTGTGTCACTGTGA
TAATACTAGTAGCTAATCTTTCTTCCCTAAATATAGTTTCTATATATAGAATAGTTATGCCATGTTCAT-AACACTCAAA
ATGCTCTGCTGTTTTCATGGTTTGATGGCCTTTTATGGTGGAA-ATTCTGCTCAATCGTTTGACAGGGTAATAAATGATG
AGTGATCAATTTCGTTGATCTGGTTTGGCATAAGCAATTCGCTAGTGTTGTAACGTGTAAGACAGAACTTTAGCTATGCA
ATCTTAAACATGGTGGTACTTTGGGCAAAATTGCATGTTTAGACTAATTTTAGTGACCTGTCTATTGATCTGAACCTTGG
ATTGTTGAATTTGCCAAGCCTGTCGCAAAACCACAAGTTACCTTTGAAAAAGAGAAAACCTAGAGGCTAGAGTTTGTGCG
ATGTAACTAACTGGCAAGATAATTTACAAGAACAAGAACAAGAGATGTCTAATATTCCCTCTGACCCAAATTAAGTGTTG
AAGTTGTACTAAAGTTGAAACACTTATTTTGGAACGGAGGGAGTATTAGAATTCTTTTTATATGGAGGTTAGGTTTGTTG
AGTTTTACTCCATAGTGGCCCAGGTAC-GACATGGGTCAGCTG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---S-S-------
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------S-------------------------------------------------------------------------
-------------------------------------------------S------------------------------
-------------------S-----------------S------------------------------------------
---------------------------S----------------------------------------------------
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------S--------------------------------------------S----------------------------
-------------------------------------S------------------------------------------
--------S---------------------------S-------------------------------------------
----------------------------------------------------SSS-------------------------
--------------------------------S----------S--SS-SS-S---------------------------
----------------------------------------------------------S----S-----S----------
-------------------------------------------------S------------------------------
--S----------S------------------------------------------S------S----------------
-----------------------------------S--------S-----------------------------------
---------------S-S-------------------------------------S-----------------------S
----------------S---------------------------------SS-----------S------S--------S
-------------------------------S----------------S-----------S------------------S
---------------------------S---------------
>forward_619
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---------------------------------------AGAGAGAAAAGCGGTGGGTG---------------------
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>reverse_2098
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-----------------CCCTGTCGCAAAACCACAAG-------------------------------------------
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